[IGSTK-Users] 3D Reconstruction.

[Patrick Cheng]

Hi Ashwath,

You might need to use more specialized tool to get a good segmentation 
of the liver vascular structure. ITK-SNAP can be used to segment less 
complex structure such as liver and tumors.

Patrick

On 2/26/2011 11:33 AM, Ashwath Hegde, ERS-HCLTech wrote:
> Hi Patrick,
>
> Thanks for the reply.
> By 3D i mean ,if the organ is Liver,then we have to construct a solid 3D model
> of the liver with transparent outer layer so that we can see the inner details of the liver.
> Is that possible using ITKSNAP.
>
> Please advice.
>
> Thanks,
> Ashwath.
>
>
>
> ________________________________________
> From: Patrick Cheng [cheng at isis.georgetown.edu]
> Sent: Saturday, February 26, 2011 12:01 AM
> To: Ashwath Hegde, ERS-HCLTech
> Subject: Re: [IGSTK-Users] 3D Reconstruction.
>
> By 3D, you mean display the contour of an anatomic structure using mesh
> right?
>
> If that's the case, It think the best way is to segment in ITK-SNAP,
> save it as mesh, and then load it with igstkMeshObjectReader and display
> it. You can find some code in Navigator example for read and display the
> mesh.
>
> Patrick
>
> On 2/25/2011 1:14 PM, Ashwath Hegde, ERS-HCLTech wrote:
>> Hi Patrick ,
>>
>> Thanks a lot for the reply.
>> We have to finish the project in another 2 weeks.
>> Which one is faster:
>> To develop 3D using ITKSNAP or To develop 3D using ITK.
>> PLease advice on this.
>> Thanks ,
>> Ashwath
>>
>> ________________________________________
>> From: Patrick Cheng [cheng at isis.georgetown.edu]
>> Sent: Friday, February 25, 2011 8:08 PM
>> To: Ashwath Hegde, ERS-HCLTech
>> Cc: igstk-users at public.kitware.com
>> Subject: Re: [IGSTK-Users] 3D Reconstruction.
>>
>> Hi Ashwath,
>>
>> That's feasible. You can use IGSTK for the tracking and use OpenIGTLink
>> to send transform information to ITK-SNAP.
>>
>> http://www.na-mic.org/Wiki/index.php/OpenIGTLink
>>
>> Patrick
>>
>> On 2/25/2011 1:11 AM, Ashwath Hegde, ERS-HCLTech wrote:
>>> Hi Patrick,
>>>
>>> Thanks for the links.
>>> I will go with ITK-SNAP.Actually I have to develop a prototype GUI for image guided surgery.
>>> GUI is being developed in QT.And it involves tracking also using Polaris API's.
>>> My question is can I use ITK-SNAP libraries to display the four views(3-2d Views(Axial,Coronal,Sagittal) and 1 3D View ) using ITK-SNAP API's and use IGSTK API's for tracking purpose in the same application framework?
>>>
>>> Thanks and Regards,
>>> Ashwath.
>>>
>>>
>>> -----Original Message-----
>>> From: igstk-users-bounces at public.kitware.com [mailto:igstk-users-bounces at public.kitware.com] On Behalf Of Patrick Cheng
>>> Sent: Friday, February 25, 2011 1:48 AM
>>> To: Ashwath Hegde, ERS-HCLTech
>>> Cc: igstk-users at public.kitware.com
>>> Subject: Re: [IGSTK-Users] 3D Reconstruction.
>>>
>>> Hi Ashwath,
>>>
>>> You can try ITKSnap or 3D Slicer for segmentation, to generate 3D models
>>> from the CT images.
>>>
>>> http://www.itksnap.org
>>>
>>> http://www.slicer.org/
>>>
>>> Patrick
>>>
>>> On 2/24/2011 1:35 PM, Ashwath Hegde, ERS-HCLTech wrote:
>>>> Hi All,
>>>> I have developed a GUI in QT which has the look and feel of the
>>>> NeedleBiopsy example application given in IGSTK\Examples.
>>>> It reads a series of CT DICOM Images and displays them in 3 2d
>>>> views(axial,coronal and sagittal) and a 3D image.The 3D image is
>>>> displayed as shown in the needlebiopsy example.
>>>> But i need to develop a solid 3D model from the series of CT images.
>>>> Is it possible to do that using IGSTK libraries?
>>>> Can any body please help me on this?
>>>> Thanks ,
>>>> Ashwath
>>>>
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