[IGSTK-Users] Segmentation fault + GLXBadDrawable

[Patrick Cheng]

Hi Özgür,

When you say error, do you mean the following update extent error 
message or something else?

 > ERROR: In
 > 
/home/ozi/Desktop/toolkits/VTK/Filtering/vtkStreamingDemandDrivenPipel 
ine.cxx, line 628
 > > > vtkStreamingDemandDrivenPipeline (0x116c3e0): The update extent
 > specified in the  information for output port 0 on algorithm
 > vtkImageMapToColors(0x971d90) is 0 5 11 0 511 223 223, which is 
outside the whole extent 0 511 0
 > 511 0 75.

I have tested the code locally, it works on my machine.

Thank you,

Patrick


  Güler wrote:
> Hi Patrick Cheng,
> 
> the error remains unfortunately adding the lines below
> 
>   this->DisplayAxial->RequestRemoveObject( m_ImageRepresentationAxial );
>   this->DisplaySagittal->RequestRemoveObject( m_ImageRepresentationSagittal );
>   this->DisplayCoronal->RequestRemoveObject( m_ImageRepresentationCoronal );
>   this->Display3D->RequestRemoveObject( m_ImageRepresentationAxial3D );
>   this->Display3D->RequestRemoveObject( m_ImageRepresentationSagittal3D );
>   this->Display3D->RequestRemoveObject( m_ImageRepresentationCoronal3D );
> 
> thx
> Özgür
> 
> PS: CVS "Sandbox" 05.10.07 18:00 CEST
> 
> 
> 
> -------- Original-Nachricht --------
>> Datum: Thu, 04 Oct 2007 16:02:00 -0400
>> Von: Patrick Cheng <cheng at isis.georgetown.edu>
>> An: "Özgür Güler" <ozgur_guler at gmx.at>
>> CC: andinet.enqu at kitware.com, IGSTK-Users at public.kitware.com
>> Betreff: Re: [IGSTK-Users] Segmentation fault + GLXBadDrawable
> 
>> Hi Özgür Güler,
>>
>> The extend update error is related to the VTK data pipeline. Because we 
>> are trying to reuse the the vtkActor, when we first load a bigger image 
>> and then load another smaller image. The vtkActor will try to update the 
>> extent using the old extent information.
>>
>> I have committed a fix to the NeedleBiopsy program, every time it's 
>> trying to add the ImageRepresentation class to the scene, it will do a 
>> remove first, this will destroy the old vtkActor.
>>
>> This doesn't fix the root of this issue, but it should work just as good.
>>
>> Thank you for reporting the error.
>>
>> Patrick
>>
>>
>> Özgür Güler wrote:
>>> No suggestions yet, again my problem. Please help
>>> Hi,
>>>
>>> the error occurs also, when I try to load images twice in the
>> needlebiopsy example application.
>>> I put a snippet of the statemachine output below.
>>> 1. attempt to load a image: works fine 
>>> 2. attempt to load a image: I get the "LoadImageSuccesInput" but the app
>> crashes when it executes the function
>> ConnectImageRepresentationProcessing()
>>> error forcing part in the function:
>>>
>>> ...
>>> this->m_ImageRepresentationAxial->RequestGetSliceNumberBounds();
>>> this->m_ImageRepresentationSagittal->RequestGetSliceNumberBounds();
>>> this->m_ImageRepresentationCoronal->RequestGetSliceNumberBounds();
>>>
>>> this->DisplayAxial->AddObserver( TransformModifiedEvent(), 
>>>                                    m_ViewPickerObserver );
>>> this->DisplaySagittal->AddObserver( TransformModifiedEvent(), 
>>>                                    m_ViewPickerObserver );
>>> this->DisplayCoronal->AddObserver( TransformModifiedEvent(), 
>>>                                    m_ViewPickerObserver );   
>>> ...
>>>
>>> StateMachineOutput "NeedleBiopsy"
>>> (DEBUG) State transition is being made : N eedleBiopsy  PointerID
>> 0x8e8ee0 PatientNameReadyState(131)  with RequestLoadImag eInput(152) --->
>> WaitingForDICOMDirectoryState(132).
>>> (DEBUG) Set ImageReader directory: /Images
>> /HeadSkullCT/CT-20070707/20070707/
>>> (DEBUG) ImageReader loading images...
>>> (DEBUG) Image Loaded...
>>> (DEBUG) State transition is being made : N eedleBiopsy  PointerID
>> 0x8e8ee0 WaitingForDICOMDirectoryState(132)  with LoadIma geSuccessInput(153)
>> ---> ImageReadyState(133).
>>> (DEBUG) Patient name mismatch
>>> (DEBUG) Patient name is overwritten to:HNO ^PHANTOM ,^^^^
>>> (ERROR) In class NeedleBiopsy No transitions have been defined for
>> current state and input  State = 133 [ImageReadyState] Inp ut = 153
>> [LoadImageSuccessInput]
>>> (DEBUG) State transition is being made : N eedleBiopsy  PointerID
>> 0x8e8ee0 ImageReadyState(133)  with OverwritePatientNameI nput(156) --->
>> PatientNameVerifiedState(134).
>>> (DEBUG) State transition is being made : N eedleBiopsy  PointerID
>> 0x8e8ee0 PatientNameVerifiedState(134)  with AxialBoundsI nput(180) --->
>> PatientNameVerifiedState(134).
>>> (DEBUG) SetAxialSliderBounds()
>>> (DEBUG) State transition is being made : N eedleBiopsy  PointerID
>> 0x8e8ee0 PatientNameVerifiedState(134)  with SagittalBoun dsInput(181) --->
>> PatientNameVerifiedState(134).
>>> (DEBUG) SetSagittalSliderBounds()
>>> (DEBUG) State transition is being made : N eedleBiopsy  PointerID
>> 0x8e8ee0 PatientNameVerifiedState(134)  with CoronalBound sInput(182) --->
>> PatientNameVerifiedState(134).
>>> (DEBUG) SetCoronalSliderBounds()
>>> (DEBUG) State transition is being made : N eedleBiopsy  PointerID
>> 0x8e8ee0 PatientNameVerifiedState(134)  with RequestLoadI mageInput(152) --->
>> WaitingForDICOMDirectoryState(132).
>>> (DEBUG) Set ImageReader directory: /Images/H
>> EAD_4626330^CT-4626330/CT-20000707-181259.000/20000707/
>>> (DEBUG) ImageReader loading images...
>>> (DEBUG) Image Loaded...
>>> (DEBUG) State transition is being made : N eedleBiopsy  PointerID
>> 0x8e8ee0 WaitingForDICOMDirectoryState(132)  with LoadIma geSuccessInput(153)
>> ---> ImageReadyState(133).
>>> (DEBUG) Patient name mismatch
>>> ERROR: In
>> /home/ozi/Desktop/toolkits/VTK/Filtering/vtkStreamingDemandDrivenPipel ine.cxx, line 628
>>> vtkStreamingDemandDrivenPipeline (0x116c3e0): The update extent
>> specified in the  information for output port 0 on algorithm
>> vtkImageMapToColors(0x971d90) is 0 5 11 0 511 223 223, which is outside the whole extent 0 511 0
>> 511 0 75.
>>> ERROR: In /home/ozi/Desktop/toolkits/VTK/Filtering/vtkImageData.cxx,
>> line 1450
>>> vtkImageData (0x16d1ad0): GetScalarPointer: Pixel (0, 0, 223) not in
>> memory.
>>>  Current extent= (0, 511, 0, 511, 0, 75)
>>>
>>> Segmentation fault
>>>
>