[IGSTK-Users] Error compiling the current cvs version on linux

[Patrick Cheng]

Hi Yair,

Did you turn the 'ITK_USE_SYSTEM_ZLIB' on when you compile ITK?

Patrick

Yair Yarom wrote:
> Hi,
> 
> Sorry if I was unclear:
> Under debian (etch), there is no "zlib/zlib.h" in the standard include paths
> (or anywhere else for that matter), as included from
> igstkToolCalibrationReader.txx. there is only /usr/include/zlib.h, so I changed
> the include (back?) to '#include "zlib.h"', and it compiles. I guess the
> location of zlib.h should be checked by the cmake, but I'm not sure (I'm new at
> this).
> 
> Later on, as described earlier, there is a conflict between zlib.h and the
> ITK's zlib.h at InsightToolkit/Utilities/itkzlib/zlib.h. This is due to the
> fact the ITK's zlib.h is an older version (1.1.4) in comparison to the debian's
> version (1.2.3). The conflict is since one has an
> #ifndef _ZLIB_H
> and the other has
> #ifndef ZLIB_H
> So both are included, causing the duplicate definitions. But I guess this is an
> ITK bug (or me not knowing how to compile ITK).
> 
> 
> Regards,
>     Yair.
> 
> 
> 
> Luis Ibanez <luis.ibanez at kitware.com> writes:
> 
>> Hi Yair,
>>
>> 1) Thanks for pointing out the shift on the
>>    numbering of serial port symbols.
>>
>>    This has been entered as bug:
>>
>> http://public.kitware.com/Bug/bug.php?op=show&bugid=4314&pos=0
>>
>>    and a fix for the CMakeLists.txt file has been
>>    committed in CVS:
>>
>> http://public.kitware.com/cgi-bin/viewcvs.cgi/CMakeLists.txt?root=IGSTK&r1=1.23&r2=1.24
>>
>>
>>
>> 2) You seem to be using an old version of IGSTK.
>>    The Include for "zlib/zlib.h" was added to
>>    the igstkToolCallibrationReader.txx on June 7th
>>    2006.
>>
>> http://public.kitware.com/cgi-bin/viewcvs.cgi/Source/igstkToolCalibrationReader.txx?annotate=1.3&root=IGSTK
>>
>>
>> Please use an updated version of IGSTK.
>>
>>
>> Please let us know if you find any other problems,
>>
>>
>>
>>  Regards,
>>
>>
>>    Luis
>>
>>
>>
>> ---------------------------
>> Yair Yarom wrote:
>>> Hi,
>>> I have several compilation errors for the cvs version on linux (debian):
>>> 1. In the CMakeLists.txt, the "high" ports numbering is wrong (no port 4 and
>>> extra port 8), at around line 161, instead of:
>>>    SET(IGSTK_SERIAL_PORT_5 "/dev/ttyS4" CACHE STRING
>>>    SET(IGSTK_SERIAL_PORT_6 "/dev/ttyS5" CACHE STRING
>>>    SET(IGSTK_SERIAL_PORT_7 "/dev/ttyS6" CACHE STRING
>>>    SET(IGSTK_SERIAL_PORT_8 "/dev/ttyS7" CACHE STRING
>>> it should be (I think):
>>>    SET(IGSTK_SERIAL_PORT_4 "/dev/ttyS4" CACHE STRING
>>>    SET(IGSTK_SERIAL_PORT_5 "/dev/ttyS5" CACHE STRING
>>>    SET(IGSTK_SERIAL_PORT_6 "/dev/ttyS6" CACHE STRING
>>>    SET(IGSTK_SERIAL_PORT_7 "/dev/ttyS7" CACHE STRING
>>> 2. In igstkToolCalibrationReader.txx, there is no "zlib/zlib.h" to include,
>>> there is only "zlib.h". But this fix possibly causes error 3:
>>> 3. When building with testing, I get the error:
>>> [ 46%] Built target IGSTK
>>> [ 46%] Building CXX object Testing/CMakeFiles/igstkStateMachineExportTest.dir/igstkStateMachineExportTest.o
>>> /usr/include/zlib.h:82: error: redefinition of ‘struct z_stream_s’
>>> /usr/local/include/InsightToolkit/Utilities/itkzlib/zlib.h:68: error: previous definition of ‘struct z_stream_s’
>>> /usr/include/zlib.h:101: error: invalid type in declaration before ‘;’ token
>>> /usr/include/zlib.h:101: error: conflicting declaration ‘typedef int z_stream’
>>> /usr/local/include/InsightToolkit/Utilities/itkzlib/zlib.h:87: error: ‘z_stream’ has a previous declaration as ‘typedef struct z_stream_s z_stream’
>>> /usr/include/zlib.h:1114: error: declaration of C function ‘int itk_zlib_gzwrite(void*, const void*, unsigned int)’ conflicts with
>>> /usr/local/include/InsightToolkit/Utilities/itkzlib/zlib.h:704: error: previous declaration ‘int itk_zlib_gzwrite(void*, void*, unsigned int)’ here
>>> /usr/include/zlib.h:1350: error: redefinition of ‘struct internal_state’
>>> /usr/local/include/InsightToolkit/Utilities/itkzlib/zlib.h:882: error: previous definition of ‘struct internal_state’
>>> make[2]: *** [Testing/CMakeFiles/igstkStateMachineExportTest.dir/igstkStateMachineExportTest.o] Error 1
>>> make[1]: *** [Testing/CMakeFiles/igstkStateMachineExportTest.dir/all] Error 2
>>> make: *** [all] Error 2
>>> Without the testings, it builds fine.
>>> Thanks,
>>>     Yair.
>>> _______________________________________________
>>> IGSTK-Users mailing list
>>> IGSTK-Users at public.kitware.com
>>> http://public.kitware.com/cgi-bin/mailman/listinfo/igstk-users
>>>
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