[IGSTK-Developers] Re: MR Dataset for registration

[Luis Ibanez]

Hi Julien,


The Liver MR file has been converted to DICOM slices.


I uploaded the file to the KW page:

      https://www.kitware.com/Uploads/


The files is called:

            output.tgz


The fixes were made in ITK, so the conversion
can be done with the new example:

      Insight/
         Examples/
                IO/
           ImageReadDicomSeriesWrite.cxx


Please let me know if you find any problem.


   Thanks


   Luis


=====================
Julien Jomier wrote:
> Hi Luis,
> 
> Thanks a lot for your help with it.
> The file is attached. It's only 4 slices of the original volume but 
> should be enough for testing.
> 
> Let me know if you need help.
> Thanks a lot,
> 
> Julien
> 
> Luis Ibanez wrote:
> 
>>
>> Hi Julien,
>>
>> The Fix of the DICOM Series Writer in ITK is still
>> in the list of things to do, but not at the top
>> of the priorities.
>>
>> Please send me the file and I will find a way to
>> export it to DICOM slices.
>>
>>
>>  Thanks
>>
>>
>>     Luis
>>
>>
>> ====================
>> Julien Jomier wrote:
>>
>>> Luis,
>>>
>>> I'd like to put 3 slices of an MR dataset of my liver in 
>>> IGSTK/Testing/Input to test the registration algorithm. However the 
>>> volume is currently in metaImage format and I've converted it using 
>>> GDCM  in ITK to a single file dicom because the ITK series writer is 
>>> not working.
>>>
>>> Here are the options:
>>>
>>> 1) Keep the file as is (i.e a single dicom file) and with the current 
>>> modification to the DICOMReader in IGSTK it works.
>>>
>>> 2) Fix ITK. Are you working on that?
>>>
>>> 3) Find a way to convert this metaImage file into a serie of 2D 
>>> Dicom. If anyone has a tool I'd be happy to send you the file 
>>> otherwise I don't plan to spend my time on finding a way.
>>>
>>> Let me know,
>>>
>>> Julien
>>>
>>>
>>>
>>
>>
>>