From s.zelzer at dkfz-heidelberg.de Sat Dec 1 12:31:54 2012 From: s.zelzer at dkfz-heidelberg.de (Sascha Zelzer) Date: Sat, 01 Dec 2012 13:31:54 +0100 Subject: [Ctk-developers] CTK next hackfest In-Reply-To: References: Message-ID: <50B9F8BA.9030608@dkfz-heidelberg.de> Hi Jc, We (the Heidelberg team) booked already a while ago, I think it was the Mercure Bologna Centro. Looking for a group discount is probably too late now... See you in Bologna, Sascha On 11/28/2012 05:10 PM, Jean-Christophe Fillion-Robin wrote: > Hi Folks, > > Will be arriving in Bologna Dec 10 at 9.30am and I should be in the > meeting room of the hotel by 10.30am :) > > For the hotel "I Portici", do we have a group discount ? Is it > something we should try to obtain ? > > See you, > Jc > > From: *Daniele Giunchi* > > Date: Fri, Sep 28, 2012 at 9:58 AM > Subject: [Ctk-developers] CTK next hackfest > To: ctk-developers at commontk.org > > > Hi CTKers! > > It's time to start planning another hackfest! Alessandro Chiarini and > I can host this one in Bologna the week of December 10-14. If that > works for enough people we'll plan to go ahead with it. > > If you've been to a previous hackfest and want to attend this one, > please add your name to the attendee list. > > http://www.commontk.org/index.php/CTK-Hackfest-Dec-2012 > > If you haven't ever attended before but are interested attending this > one, or if you want to invite someone, please contact the organizing > committee and we'll discuss the options. > > Thanks, > > The Organizing Committee > Ivo Wolf i.wolf at hs-mannheim.de > Stephen Aylward Stephen.Aylward at Kitware.com > Steve Pieper pieper at bwh.harvard.edu > > ---------------------------------------- > Dott. Daniele Giunchi > BioComputing Competence Centre > SCS srl > Via Parini 1, 40033 Casalecchio di Reno BO, Italy > http://bit.ly/czAFT3 > http://www.scsitaly.com > mailto:d.giunchi at scsitaly.com > ------------------------------------------- > > The information transmitted is intended for the person or entity to > which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, > or taking of any action in reliance upon, this information by persons > or entities other than the intended recipient is prohibited. If you > received this in error, please contact the sender and delete the > material from any computer. > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > -------------- next part -------------- An HTML attachment was scrubbed... URL: From stephen.aylward at kitware.com Sun Dec 2 12:54:45 2012 From: stephen.aylward at kitware.com (Stephen Aylward) Date: Sun, 2 Dec 2012 07:54:45 -0500 Subject: [Ctk-developers] Turn off documentation building Message-ID: It would be great if I could turn off building CTK documentation. Right not it generates a warning message stating that DOT is not installed. I don't want the documentation or to install DOT, but I haven't found a way to making this warning/documentation building stop. This seems almost like a philosophical issue. Should we require people to build documentation every time they build CTK? I think not, however the code looks quite purposeful right now in wanting to build documentation every time. So, are there folks who strongly think it should be built every time and we state that DOT is required by CTK? Thanks, Stephen -- ============================== Stephen R. Aylward, Ph.D. Senior Director of Operations - North Carolina Kitware, Inc. - North Carolina Office http://www.kitware.com stephen.aylward (Skype) (919) 969-6990 x300 From jchris.fillionr at kitware.com Sun Dec 2 13:37:10 2012 From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin) Date: Sun, 2 Dec 2012 08:37:10 -0500 Subject: [Ctk-developers] Turn off documentation building In-Reply-To: References: Message-ID: If dot and doxygen are found, it will allow develper to run: Make doc Beside of that you can ignore the warning. We should probably change it into a message(STATUS ....) Instead. Thanks Jc -- Sent from my mobile device On Dec 2, 2012 8:01 AM, "Stephen Aylward" wrote: > It would be great if I could turn off building CTK documentation. > > Right not it generates a warning message stating that DOT is not > installed. I don't want the documentation or to install DOT, but I > haven't found a way to making this warning/documentation building > stop. > > This seems almost like a philosophical issue. Should we require > people to build documentation every time they build CTK? I think > not, however the code looks quite purposeful right now in wanting to > build documentation every time. So, are there folks who strongly > think it should be built every time and we state that DOT is required > by CTK? > > Thanks, > Stephen > > -- > > ============================== > Stephen R. Aylward, Ph.D. > Senior Director of Operations - North Carolina > Kitware, Inc. - North Carolina Office > http://www.kitware.com > stephen.aylward (Skype) > (919) 969-6990 x300 > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > -------------- next part -------------- An HTML attachment was scrubbed... URL: From stephen.aylward at kitware.com Sun Dec 2 14:10:30 2012 From: stephen.aylward at kitware.com (Stephen Aylward) Date: Sun, 2 Dec 2012 09:10:30 -0500 Subject: [Ctk-developers] Turn off documentation building In-Reply-To: References: Message-ID: Will change the warning to a message. s On Sun, Dec 2, 2012 at 8:37 AM, Jean-Christophe Fillion-Robin wrote: > If dot and doxygen are found, it will allow develper to run: > Make doc > > Beside of that you can ignore the warning. We should probably change it into > a message(STATUS ....) Instead. > > Thanks > Jc > > -- > Sent from my mobile device > > On Dec 2, 2012 8:01 AM, "Stephen Aylward" > wrote: >> >> It would be great if I could turn off building CTK documentation. >> >> Right not it generates a warning message stating that DOT is not >> installed. I don't want the documentation or to install DOT, but I >> haven't found a way to making this warning/documentation building >> stop. >> >> This seems almost like a philosophical issue. Should we require >> people to build documentation every time they build CTK? I think >> not, however the code looks quite purposeful right now in wanting to >> build documentation every time. So, are there folks who strongly >> think it should be built every time and we state that DOT is required >> by CTK? >> >> Thanks, >> Stephen >> >> -- >> >> ============================== >> Stephen R. Aylward, Ph.D. >> Senior Director of Operations - North Carolina >> Kitware, Inc. - North Carolina Office >> http://www.kitware.com >> stephen.aylward (Skype) >> (919) 969-6990 x300 >> _______________________________________________ >> Ctk-developers mailing list >> Ctk-developers at commontk.org >> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers -- ============================== Stephen R. Aylward, Ph.D. Senior Director of Operations - North Carolina Kitware, Inc. - North Carolina Office http://www.kitware.com stephen.aylward (Skype) (919) 969-6990 x300 From a.decrescenzo at scsitaly.com Mon Dec 3 08:19:54 2012 From: a.decrescenzo at scsitaly.com (Alessandra De Crescenzo) Date: Mon, 3 Dec 2012 09:19:54 +0100 Subject: [Ctk-developers] Special prices for "I Portici" Hotel Message-ID: Hi JC! For members of the CTK-hackfest, the I PORTICI hotel offered these special prices: Standard room with queen size bed 89? Standard room with king size bed 119? Standard room twin or king size bed 139? The prices are per room/per night, and include taxes, breakfast, adsl wifi in public areas. This morning I will send you a list of hotels close to "I PORTICI", to have more choice. -- Dott.ssa Alessandra De Crescenzo SCS s.r.l. Via Parini 1, 40033 Casalecchio di Reno BO, Italy mobile: +39 3921926954 mailto:a.decrescenzo at scsitaly.com _______________________________________________ Please use coding in the subject of your mail, viz. Q=Question I=Information U=Urgent A=Action _______________________________________________ The information transmitted is intended for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipient is prohibited. If you received this in error, please contact the sender and delete the material from any computer. -------------- next part -------------- An HTML attachment was scrubbed... URL: From d.giunchi at scsitaly.com Mon Dec 3 14:04:17 2012 From: d.giunchi at scsitaly.com (Daniele Giunchi) Date: Mon, 3 Dec 2012 15:04:17 +0100 Subject: [Ctk-developers] Hackfest - tcon Message-ID: Dear All, we are planning to do a tcon Wednesday 5th december at 3.30 p.m. CET, just to discuss some organizational topics. We can use google hangout, my google account is dannox at gmail.com. cheers, Daniele ---------------------------------------- Dott. Daniele Giunchi http://about.me/danielegiunchi BioComputing Competence Centre SCS srl Via Parini 1, 40033 Casalecchio di Reno BO, Italy http://bit.ly/czAFT3 http://www.scsitaly.com mailto:d.giunchi at scsitaly.com ------------------------------------------- The information transmitted is intended for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipient is prohibited. If you received this in error, please contact the sender and delete the material from any computer. -------------- next part -------------- An HTML attachment was scrubbed... URL: From jchris.fillionr at kitware.com Mon Dec 3 16:12:56 2012 From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin) Date: Mon, 3 Dec 2012 11:12:56 -0500 Subject: [Ctk-developers] Turn off documentation building In-Reply-To: References: Message-ID: Excellent. You could create a pull request that will be reviewed and integrated. Thanks Jc On Sun, Dec 2, 2012 at 9:10 AM, Stephen Aylward wrote: > Will change the warning to a message. > > s > > On Sun, Dec 2, 2012 at 8:37 AM, Jean-Christophe Fillion-Robin > wrote: > > If dot and doxygen are found, it will allow develper to run: > > Make doc > > > > Beside of that you can ignore the warning. We should probably change it > into > > a message(STATUS ....) Instead. > > > > Thanks > > Jc > > > > -- > > Sent from my mobile device > > > > On Dec 2, 2012 8:01 AM, "Stephen Aylward" > > wrote: > >> > >> It would be great if I could turn off building CTK documentation. > >> > >> Right not it generates a warning message stating that DOT is not > >> installed. I don't want the documentation or to install DOT, but I > >> haven't found a way to making this warning/documentation building > >> stop. > >> > >> This seems almost like a philosophical issue. Should we require > >> people to build documentation every time they build CTK? I think > >> not, however the code looks quite purposeful right now in wanting to > >> build documentation every time. So, are there folks who strongly > >> think it should be built every time and we state that DOT is required > >> by CTK? > >> > >> Thanks, > >> Stephen > >> > >> -- > >> > >> ============================== > >> Stephen R. Aylward, Ph.D. > >> Senior Director of Operations - North Carolina > >> Kitware, Inc. - North Carolina Office > >> http://www.kitware.com > >> stephen.aylward (Skype) > >> (919) 969-6990 x300 > >> _______________________________________________ > >> Ctk-developers mailing list > >> Ctk-developers at commontk.org > >> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > > > > -- > > ============================== > Stephen R. Aylward, Ph.D. > Senior Director of Operations - North Carolina > Kitware, Inc. - North Carolina Office > http://www.kitware.com > stephen.aylward (Skype) > (919) 969-6990 x300 > -- +1 919 869 8849 -------------- next part -------------- An HTML attachment was scrubbed... URL: From a.decrescenzo at scsitaly.com Tue Dec 4 13:54:02 2012 From: a.decrescenzo at scsitaly.com (Alessandra De Crescenzo) Date: Tue, 4 Dec 2012 14:54:02 +0100 Subject: [Ctk-developers] Useful infos Message-ID: Hi to all! I send you some useful infos for the CTK-hackfest in Bologna: https://www.biomedtown.org/biomed_town/MAF/public/WelcomeKit.pdf You can check the meteo here: http://www.ilmeteo.it/meteo/provincia-BO?g=7 Let me know if there are specific requirements about the food: vegetarian, vegan, allergies, or other. Thanks, Alessandra -- Dott.ssa Alessandra De Crescenzo SCS s.r.l. Via Parini 1, 40033 Casalecchio di Reno BO, Italy mobile: +39 3921926954 mailto:a.decrescenzo at scsitaly.com _______________________________________________ Please use coding in the subject of your mail, viz. Q=Question I=Information U=Urgent A=Action _______________________________________________ The information transmitted is intended for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipient is prohibited. If you received this in error, please contact the sender and delete the material from any computer. -------------- next part -------------- An HTML attachment was scrubbed... URL: From pieper at ibility.net Tue Dec 4 13:58:33 2012 From: pieper at ibility.net (Steve Pieper) Date: Tue, 4 Dec 2012 08:58:33 -0500 Subject: [Ctk-developers] Special prices for "I Portici" Hotel In-Reply-To: References: Message-ID: This worked for me - I mentioned SCS can hackfest to the hotel and saved 10 euros a night. Thanks for setting this up! See you soon, -Steve On Mon, Dec 3, 2012 at 3:19 AM, Alessandra De Crescenzo < a.decrescenzo at scsitaly.com> wrote: > Hi JC! > For members of the CTK-hackfest, the I PORTICI hotel offered these special > prices: > > Standard room with queen size bed 89? > Standard room with king size bed 119? > Standard room twin or king size bed 139? > > The prices are per room/per night, and include taxes, breakfast, adsl wifi > in public areas. > > This morning I will send you a list of hotels close to "I PORTICI", to > have more choice. > > -- > Dott.ssa Alessandra De Crescenzo > SCS s.r.l. > Via Parini 1, 40033 Casalecchio di Reno BO, Italy > mobile: +39 3921926954 > mailto:a.decrescenzo at scsitaly.com > _______________________________________________ > Please use coding in the subject of your mail, viz. > Q=Question I=Information U=Urgent A=Action > _______________________________________________ > The information transmitted is intended for the person or entity to which > it is addressed and may contain confidential and/or privileged material. > Any review, retransmission, dissemination or other use of, or taking of any > action in reliance upon, this information by persons or entities other than > the intended recipient is prohibited. If you received this in error, please > contact the sender and delete the material from any computer. > > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From a.decrescenzo at scsitaly.com Tue Dec 4 14:11:08 2012 From: a.decrescenzo at scsitaly.com (Alessandra De Crescenzo) Date: Tue, 4 Dec 2012 15:11:08 +0100 Subject: [Ctk-developers] Useful infos In-Reply-To: References: Message-ID: Sorry, my mistake! The pdf is now available**. https://www.biomedtown.org/biomed_town/MAF/public/WelcomeKit.pdf Alessandra 2012/12/4 Miklos Espak > Ciao Alessandra, > > I registered to the site, but I cannot download the pdf. It says > "Insufficient Privileges". > > I'm from the CMIC, UCL, London. > > Cheers, > Miklos Espak > > > > On Tue, Dec 4, 2012 at 1:54 PM, Alessandra De Crescenzo > wrote: > > Hi to all! > > I send you some useful infos for the CTK-hackfest in Bologna: > > https://www.biomedtown.org/biomed_town/MAF/public/WelcomeKit.pdf > > You can check the meteo here: > http://www.ilmeteo.it/meteo/provincia-BO?g=7 > > > > Let me know if there are specific requirements about the food: > vegetarian, > > vegan, allergies, or other. > > Thanks, > > Alessandra > > > > -- > > Dott.ssa Alessandra De Crescenzo > > SCS s.r.l. > > Via Parini 1, 40033 Casalecchio di Reno BO, Italy > > mobile: +39 3921926954 > > mailto:a.decrescenzo at scsitaly.com > > _______________________________________________ > > Please use coding in the subject of your mail, viz. > > Q=Question I=Information U=Urgent A=Action > > _______________________________________________ > > The information transmitted is intended for the person or entity to > which it > > is addressed and may contain confidential and/or privileged material. Any > > review, retransmission, dissemination or other use of, or taking of any > > action in reliance upon, this information by persons or entities other > than > > the intended recipient is prohibited. If you received this in error, > please > > contact the sender and delete the material from any computer. > > > > _______________________________________________ > > Ctk-developers mailing list > > Ctk-developers at commontk.org > > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > > > -- Dott.ssa Alessandra De Crescenzo SCS s.r.l. Via Parini 1, 40033 Casalecchio di Reno BO, Italy mobile: +39 3921926954 mailto:a.decrescenzo at scsitaly.com _______________________________________________ Please use coding in the subject of your mail, viz. Q=Question I=Information U=Urgent A=Action _______________________________________________ The information transmitted is intended for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipient is prohibited. If you received this in error, please contact the sender and delete the material from any computer. -------------- next part -------------- An HTML attachment was scrubbed... URL: From espakm at gmail.com Tue Dec 4 14:16:47 2012 From: espakm at gmail.com (Miklos Espak) Date: Tue, 4 Dec 2012 14:16:47 +0000 Subject: [Ctk-developers] Useful infos In-Reply-To: References: Message-ID: Perfect, thanks! Miklos On Tue, Dec 4, 2012 at 2:11 PM, Alessandra De Crescenzo wrote: > Sorry, my mistake! The pdf is now available. > https://www.biomedtown.org/biomed_town/MAF/public/WelcomeKit.pdf > > Alessandra > > > 2012/12/4 Miklos Espak >> >> Ciao Alessandra, >> >> I registered to the site, but I cannot download the pdf. It says >> "Insufficient Privileges". >> >> I'm from the CMIC, UCL, London. >> >> Cheers, >> Miklos Espak >> >> >> >> On Tue, Dec 4, 2012 at 1:54 PM, Alessandra De Crescenzo >> wrote: >> > Hi to all! >> > I send you some useful infos for the CTK-hackfest in Bologna: >> > https://www.biomedtown.org/biomed_town/MAF/public/WelcomeKit.pdf >> > You can check the meteo here: >> > http://www.ilmeteo.it/meteo/provincia-BO?g=7 >> > >> > Let me know if there are specific requirements about the food: >> > vegetarian, >> > vegan, allergies, or other. >> > Thanks, >> > Alessandra >> > >> > -- >> > Dott.ssa Alessandra De Crescenzo >> > SCS s.r.l. >> > Via Parini 1, 40033 Casalecchio di Reno BO, Italy >> > mobile: +39 3921926954 >> > mailto:a.decrescenzo at scsitaly.com >> > _______________________________________________ >> > Please use coding in the subject of your mail, viz. >> > Q=Question I=Information U=Urgent A=Action >> > _______________________________________________ >> > The information transmitted is intended for the person or entity to >> > which it >> > is addressed and may contain confidential and/or privileged material. >> > Any >> > review, retransmission, dissemination or other use of, or taking of any >> > action in reliance upon, this information by persons or entities other >> > than >> > the intended recipient is prohibited. If you received this in error, >> > please >> > contact the sender and delete the material from any computer. >> > >> > _______________________________________________ >> > Ctk-developers mailing list >> > Ctk-developers at commontk.org >> > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers >> > > > > > > -- > Dott.ssa Alessandra De Crescenzo > SCS s.r.l. > Via Parini 1, 40033 Casalecchio di Reno BO, Italy > mobile: +39 3921926954 > mailto:a.decrescenzo at scsitaly.com > _______________________________________________ > Please use coding in the subject of your mail, viz. > Q=Question I=Information U=Urgent A=Action > _______________________________________________ > The information transmitted is intended for the person or entity to which it > is addressed and may contain confidential and/or privileged material. Any > review, retransmission, dissemination or other use of, or taking of any > action in reliance upon, this information by persons or entities other than > the intended recipient is prohibited. If you received this in error, please > contact the sender and delete the material from any computer. > > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > From espakm at gmail.com Tue Dec 4 17:09:21 2012 From: espakm at gmail.com (Miklos Espak) Date: Tue, 4 Dec 2012 17:09:21 +0000 Subject: [Ctk-developers] ctkPlugins::install hides the original cause of ctkPluginExceptions Message-ID: Hi, CTK failed to install one of our MITK plugins. The error turned to be in our plugin, but I found a little mistake in the CTK code while debugging, that made it a bit difficult to find the error in the plugin. In ctkPluginStorageSQL.cpp:436 a ctkPluginException is thrown when a plugin could not be loaded. This is fine, but in ctkPlugins.cpp:125-139 it is caught as ctkException, and re-wrapped to another ctkPluginException. Because of this, the original error does not appear in the log (BlueBerry.consoleLog), what makes it a bit troublesome to find out what is wrong with the plugin. Inserting these lines at line 125 has solved the problem for me: catch (const ctkPluginException& e) { if (!pa.isNull()) { pa->purge(); } throw e; } Cheers, Miklos From s.zelzer at dkfz-heidelberg.de Tue Dec 4 18:32:29 2012 From: s.zelzer at dkfz-heidelberg.de (Sascha Zelzer) Date: Tue, 04 Dec 2012 19:32:29 +0100 Subject: [Ctk-developers] ctkPlugins::install hides the original cause of ctkPluginExceptions In-Reply-To: References: Message-ID: <50BE41BD.2080303@dkfz-heidelberg.de> Hi Miklos, thanks for reporting this. In my opinion, code in ctkPluginStorageSQL.cpp shouldn't throw ctkPluginException objects but rather ctkRuntimeException or similar. This code misuses ctkPluginException in a semantic sense. But you are right that the error messages from wrapped exceptions could be suppressed in the console output if not handled properly. For MITK, the following commit fixed this: https://github.com/MITK/MITK/commit/298de77d3de67c228e51e6c4b9959902b3840372 Thanks, Sascha On 12/04/2012 06:09 PM, Miklos Espak wrote: > Hi, > > CTK failed to install one of our MITK plugins. The error turned to be > in our plugin, but I found a little mistake in the CTK code while > debugging, that made it a bit difficult to find the error in the > plugin. > > In ctkPluginStorageSQL.cpp:436 a ctkPluginException is thrown when a > plugin could not be loaded. > > This is fine, but in ctkPlugins.cpp:125-139 it is caught as > ctkException, and re-wrapped to another ctkPluginException. > > Because of this, the original error does not appear in the log > (BlueBerry.consoleLog), what makes it a bit troublesome to find out > what is wrong with the plugin. > > Inserting these lines at line 125 has solved the problem for me: > > catch (const ctkPluginException& e) > { > if (!pa.isNull()) > { > pa->purge(); > } > throw e; > } > > > Cheers, > Miklos > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers From espakm at gmail.com Wed Dec 5 02:05:49 2012 From: espakm at gmail.com (Miklos Espak) Date: Wed, 5 Dec 2012 02:05:49 +0000 Subject: [Ctk-developers] ctkPlugins::install hides the original cause of ctkPluginExceptions In-Reply-To: <50BE41BD.2080303@dkfz-heidelberg.de> References: <50BE41BD.2080303@dkfz-heidelberg.de> Message-ID: Thank you, Sascha! The output is now even more detailed, and it contains the error that I was looking for. Miklos On Tue, Dec 4, 2012 at 6:32 PM, Sascha Zelzer wrote: > Hi Miklos, > > thanks for reporting this. In my opinion, code in ctkPluginStorageSQL.cpp > shouldn't throw ctkPluginException objects but rather ctkRuntimeException or > similar. This code misuses ctkPluginException in a semantic sense. > > But you are right that the error messages from wrapped exceptions could be > suppressed in the console output if not handled properly. For MITK, the > following commit fixed this: > > https://github.com/MITK/MITK/commit/298de77d3de67c228e51e6c4b9959902b3840372 > > Thanks, > Sascha > > > On 12/04/2012 06:09 PM, Miklos Espak wrote: >> >> Hi, >> >> CTK failed to install one of our MITK plugins. The error turned to be >> in our plugin, but I found a little mistake in the CTK code while >> debugging, that made it a bit difficult to find the error in the >> plugin. >> >> In ctkPluginStorageSQL.cpp:436 a ctkPluginException is thrown when a >> plugin could not be loaded. >> >> This is fine, but in ctkPlugins.cpp:125-139 it is caught as >> ctkException, and re-wrapped to another ctkPluginException. >> >> Because of this, the original error does not appear in the log >> (BlueBerry.consoleLog), what makes it a bit troublesome to find out >> what is wrong with the plugin. >> >> Inserting these lines at line 125 has solved the problem for me: >> >> catch (const ctkPluginException& e) >> { >> if (!pa.isNull()) >> { >> pa->purge(); >> } >> throw e; >> } >> >> >> Cheers, >> Miklos >> _______________________________________________ >> Ctk-developers mailing list >> Ctk-developers at commontk.org >> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > > From pieper at ibility.net Wed Dec 5 14:34:00 2012 From: pieper at ibility.net (Steve Pieper) Date: Wed, 5 Dec 2012 09:34:00 -0500 Subject: [Ctk-developers] Hackfest - tcon In-Reply-To: References: Message-ID: Hi Daniele - Are you setting up the hangout today? Or should someone else set it up? I look forward to talking, but can only stay on until 10:00am my time (US Eastern). Thanks, Steve On Mon, Dec 3, 2012 at 9:04 AM, Daniele Giunchi wrote: > Dear All, > we are planning to do a tcon Wednesday 5th december at 3.30 p.m. CET, just > to discuss some organizational topics. We can use google hangout, my google > account is dannox at gmail.com. > > cheers, > Daniele > > > ---------------------------------------- > Dott. Daniele Giunchi > http://about.me/danielegiunchi > BioComputing Competence Centre > SCS srl > Via Parini 1, 40033 Casalecchio di Reno BO, Italy > http://bit.ly/czAFT3 > http://www.scsitaly.com > mailto:d.giunchi at scsitaly.com > ------------------------------------------- > > The information transmitted is intended for the person or entity to > which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, > or taking of any action in reliance upon, this information by persons > or entities other than the intended recipient is prohibited. If you > received this in error, please contact the sender and delete the > material from any computer. > > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From julien.finet at kitware.com Wed Dec 5 14:51:56 2012 From: julien.finet at kitware.com (Julien Finet) Date: Wed, 5 Dec 2012 09:51:56 -0500 Subject: [Ctk-developers] Hackfest - tcon In-Reply-To: References: Message-ID: Hi Daniele, Do you have a google hangout link for the tcon ? Julien. On Mon, Dec 3, 2012 at 9:04 AM, Daniele Giunchi wrote: > Dear All, > we are planning to do a tcon Wednesday 5th december at 3.30 p.m. CET, just > to discuss some organizational topics. We can use google hangout, my google > account is dannox at gmail.com. > > cheers, > Daniele > > > ---------------------------------------- > Dott. Daniele Giunchi > http://about.me/danielegiunchi > BioComputing Competence Centre > SCS srl > Via Parini 1, 40033 Casalecchio di Reno BO, Italy > http://bit.ly/czAFT3 > http://www.scsitaly.com > mailto:d.giunchi at scsitaly.com > ------------------------------------------- > > The information transmitted is intended for the person or entity to > which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, > or taking of any action in reliance upon, this information by persons > or entities other than the intended recipient is prohibited. If you > received this in error, please contact the sender and delete the > material from any computer. > > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From d.giunchi at scsitaly.com Wed Dec 5 15:12:20 2012 From: d.giunchi at scsitaly.com (Daniele Giunchi) Date: Wed, 5 Dec 2012 16:12:20 +0100 Subject: [Ctk-developers] Hackfest - tcon In-Reply-To: References: Message-ID: Hi Guys, we postpone the meeting to tomorrow, same hout 3.30 pm CET This was a drill to check google technology =) cheers, Daniele ---------------------------------------- Dott. Daniele Giunchi http://about.me/danielegiunchi BioComputing Competence Centre SCS srl Via Parini 1, 40033 Casalecchio di Reno BO, Italy http://bit.ly/czAFT3 http://www.scsitaly.com mailto:d.giunchi at scsitaly.com ------------------------------------------- The information transmitted is intended for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipient is prohibited. If you received this in error, please contact the sender and delete the material from any computer. On Wed, Dec 5, 2012 at 3:51 PM, Julien Finet wrote: > Hi Daniele, > > Do you have a google hangout link for the tcon ? > > Julien. > > > On Mon, Dec 3, 2012 at 9:04 AM, Daniele Giunchi wrote: > >> Dear All, >> we are planning to do a tcon Wednesday 5th december at 3.30 p.m. CET, >> just to discuss some organizational topics. We can use google hangout, my >> google account is dannox at gmail.com. >> >> cheers, >> Daniele >> >> >> ---------------------------------------- >> Dott. Daniele Giunchi >> http://about.me/danielegiunchi >> BioComputing Competence Centre >> SCS srl >> Via Parini 1, 40033 Casalecchio di Reno BO, Italy >> http://bit.ly/czAFT3 >> http://www.scsitaly.com >> mailto:d.giunchi at scsitaly.com >> ------------------------------------------- >> >> The information transmitted is intended for the person or entity to >> which it is addressed and may contain confidential and/or privileged >> material. Any review, retransmission, dissemination or other use of, >> or taking of any action in reliance upon, this information by persons >> or entities other than the intended recipient is prohibited. If you >> received this in error, please contact the sender and delete the >> material from any computer. >> >> _______________________________________________ >> Ctk-developers mailing list >> Ctk-developers at commontk.org >> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers >> >> > -------------- next part -------------- An HTML attachment was scrubbed... URL: From pieper at ibility.net Thu Dec 6 14:37:03 2012 From: pieper at ibility.net (Steve Pieper) Date: Thu, 6 Dec 2012 09:37:03 -0500 Subject: [Ctk-developers] Hackfest - tcon In-Reply-To: References: Message-ID: Hi Daniele - Are we on for today? or maybe I'm still having hangout trouble... :) -Steve On Wed, Dec 5, 2012 at 10:12 AM, Daniele Giunchi wrote: > Hi Guys, > we postpone the meeting to tomorrow, same hout 3.30 pm CET > This was a drill to check google technology =) > > cheers, > Daniele > > ---------------------------------------- > Dott. Daniele Giunchi > http://about.me/danielegiunchi > BioComputing Competence Centre > SCS srl > Via Parini 1, 40033 Casalecchio di Reno BO, Italy > http://bit.ly/czAFT3 > http://www.scsitaly.com > mailto:d.giunchi at scsitaly.com > ------------------------------------------- > > The information transmitted is intended for the person or entity to > which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, > or taking of any action in reliance upon, this information by persons > or entities other than the intended recipient is prohibited. If you > received this in error, please contact the sender and delete the > material from any computer. > > > > On Wed, Dec 5, 2012 at 3:51 PM, Julien Finet wrote: > >> Hi Daniele, >> >> Do you have a google hangout link for the tcon ? >> >> Julien. >> >> >> On Mon, Dec 3, 2012 at 9:04 AM, Daniele Giunchi wrote: >> >>> Dear All, >>> we are planning to do a tcon Wednesday 5th december at 3.30 p.m. CET, >>> just to discuss some organizational topics. We can use google hangout, my >>> google account is dannox at gmail.com. >>> >>> cheers, >>> Daniele >>> >>> >>> ---------------------------------------- >>> Dott. Daniele Giunchi >>> http://about.me/danielegiunchi >>> BioComputing Competence Centre >>> SCS srl >>> Via Parini 1, 40033 Casalecchio di Reno BO, Italy >>> http://bit.ly/czAFT3 >>> http://www.scsitaly.com >>> mailto:d.giunchi at scsitaly.com >>> ------------------------------------------- >>> >>> The information transmitted is intended for the person or entity to >>> which it is addressed and may contain confidential and/or privileged >>> material. Any review, retransmission, dissemination or other use of, >>> or taking of any action in reliance upon, this information by persons >>> or entities other than the intended recipient is prohibited. If you >>> received this in error, please contact the sender and delete the >>> material from any computer. >>> >>> _______________________________________________ >>> Ctk-developers mailing list >>> Ctk-developers at commontk.org >>> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers >>> >>> >> > > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From d.giunchi at scsitaly.com Thu Dec 6 14:39:03 2012 From: d.giunchi at scsitaly.com (Daniele Giunchi) Date: Thu, 6 Dec 2012 15:39:03 +0100 Subject: [Ctk-developers] hangout link Message-ID: Hi All, this is the link, https://plus.google.com/hangouts/_/df511e058774ae792c60cf16bc6c56b8d122aed6?authuser=0&hl=it we're available for 20 minute max, cause another meeting =) best, daniele % alberto & alessandra -------------- next part -------------- An HTML attachment was scrubbed... URL: From pieper at ibility.net Thu Dec 6 15:01:25 2012 From: pieper at ibility.net (Steve Pieper) Date: Thu, 6 Dec 2012 10:01:25 -0500 Subject: [Ctk-developers] Hackfest - tcon In-Reply-To: References: Message-ID: The hangout went great - plans are coming together on the event page. http://www.commontk.org/index.php/CTK-Hackfest-Dec-2012 Attendees should update their plans on the wiki. Anyone else with questions or suggestions of topics that might be considered by the hacking group please chime in! -Steve On Thu, Dec 6, 2012 at 9:55 AM, Tarbox, Lawrence wrote: > I haven?t figured out this hangout thing, either. > > > > *From:* ctk-developers-bounces at commontk.org [mailto: > ctk-developers-bounces at commontk.org] *On Behalf Of *Steve Pieper > *Sent:* Thursday, December 06, 2012 8:37 AM > *To:* Daniele Giunchi > *Cc:* ctk-developers > *Subject:* Re: [Ctk-developers] Hackfest - tcon > > > > Hi Daniele - > > Are we on for today? or maybe I'm still having hangout trouble... :) > > -Steve > > > > On Wed, Dec 5, 2012 at 10:12 AM, Daniele Giunchi > wrote: > > Hi Guys, > > we postpone the meeting to tomorrow, same hout 3.30 pm CET > > This was a drill to check google technology =) > > > > cheers, > > Daniele > > > ---------------------------------------- > Dott. Daniele Giunchi > http://about.me/danielegiunchi > BioComputing Competence Centre > SCS srl > Via Parini 1, 40033 Casalecchio di Reno BO, Italy > http://bit.ly/czAFT3 > http://www.scsitaly.com > mailto:d.giunchi at scsitaly.com > ------------------------------------------- > > The information transmitted is intended for the person or entity to > which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, > or taking of any action in reliance upon, this information by persons > or entities other than the intended recipient is prohibited. If you > received this in error, please contact the sender and delete the > material from any computer. > > > > On Wed, Dec 5, 2012 at 3:51 PM, Julien Finet > wrote: > > Hi Daniele, > > > > Do you have a google hangout link for the tcon ? > > > > Julien. > > > > On Mon, Dec 3, 2012 at 9:04 AM, Daniele Giunchi > wrote: > > Dear All, > > we are planning to do a tcon Wednesday 5th december at 3.30 p.m. CET, just > to discuss some organizational topics. We can use google hangout, my google > account is dannox at gmail.com. > > > > cheers, > > Daniele > > > > > ---------------------------------------- > Dott. Daniele Giunchi > http://about.me/danielegiunchi > BioComputing Competence Centre > SCS srl > Via Parini 1, 40033 Casalecchio di Reno BO, Italy > http://bit.ly/czAFT3 > http://www.scsitaly.com > mailto:d.giunchi at scsitaly.com > ------------------------------------------- > > The information transmitted is intended for the person or entity to > which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, > or taking of any action in reliance upon, this information by persons > or entities other than the intended recipient is prohibited. If you > received this in error, please contact the sender and delete the > material from any computer. > > > > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > > > > > > > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > > > > ------------------------------ > > The material in this message is private and may contain Protected > Healthcare Information (PHI). If you are not the intended recipient, be > advised that any unauthorized use, disclosure, copying or the taking of any > action in reliance on the contents of this information is strictly > prohibited. If you have received this email in error, please immediately > notify the sender via telephone or return mail. > -------------- next part -------------- An HTML attachment was scrubbed... URL: From M.Nolden at Dkfz-Heidelberg.de Tue Dec 11 16:03:18 2012 From: M.Nolden at Dkfz-Heidelberg.de (Nolden, Marco) Date: Tue, 11 Dec 2012 17:03:18 +0100 Subject: [Ctk-developers] CTK, DCMTK and Debian Message-ID: Hi Michael, I'm currently at the hackfest in Bologna and can further investigate your suggestion. I tried to integrate a recent scu.cc in CTK: there are a lot of compile errors related to changes in the logging or error constants on the DCMTK side: https://github.com/nolden/ctk-debian/issues/1 Any chance to back port also the required stuff or should we just use an older scu? Best, Marco -----Urspr?ngliche Nachricht----- Von: ctk-developers-bounces at commontk.org [mailto:ctk-developers-bounces at commontk.org] Im Auftrag von Michael Onken Gesendet: Dienstag, 30. Oktober 2012 12:53 An: ctk-developers at commontk.org Betreff: Re: [Ctk-developers] CTK, DCMTK and Debian Hi Marco, On 25.10.2012 17:16, Marco Nolden wrote: > 2. DCMTK in debian is version 3.6.0. This unfortunately lacks the SCU > functionality we're using for Query/Retrieve. Before switching to > 3.6.1 in the superbuild we had a backported version of the new SCU > class in the CTK repository (ctkDcmSCU). I tried to reactivate this > backport in my modified package but it failed to compile. I think the > best way for this would be to fix this in CTK itself by putting the > new SCU class there again, make it compile and add some CMake logic > based on the DCMTK version to choose the right class. But I'm not sure > which other non-compatible changes we have that require DCMTK >= > 3.6.1. To my knowledge (which may be outdated) no new source code functionality besides DcmSCU enhancements are used in CTK. I would try to copy any recent DcmSCU.h/cc, rename the files (and classes) to CtkSCU.h/cc and use them in the CTK code instead. Then look how far you can get with that. However, there may have been changes in the BUILD infrastructure that you rely on but I do not have an overview what is used at the moment, or whether it is highly relevant for Debian builds. Best, Michael -- Dipl.-Inform. Michael Onken FuE Bereich Gesundheit | R&D Division Health OFFIS FuE Bereich Gesundheit | R&D Division Health Escherweg 2 - 26121 Oldenburg - Germany Phone/Fax.: +49 441 9722-149/111 E-Mail: onken at offis.de URL: http://www.offis.de _______________________________________________ Ctk-developers mailing list Ctk-developers at commontk.org http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers From julien.finet at kitware.com Thu Dec 13 12:13:28 2012 From: julien.finet at kitware.com (Julien Finet) Date: Thu, 13 Dec 2012 07:13:28 -0500 Subject: [Ctk-developers] CTK logo Message-ID: Greetings from Bologna, We currently have an opaque logo for CTK (see top right logo here http://www.commontk.org/index.php/Main_Page). It would be great if we could have a logo with transparent background or even better in vectorial format (.svg ?). Who is the original author of the logo and could he/she provide those other versions ? Thanks for your help, Julien. -------------- next part -------------- An HTML attachment was scrubbed... URL: From kikinis at bwh.harvard.edu Thu Dec 13 12:33:33 2012 From: kikinis at bwh.harvard.edu (Ron Kikinis) Date: Thu, 13 Dec 2012 07:33:33 -0500 Subject: [Ctk-developers] CTK logo In-Reply-To: References: Message-ID: <50C9CB1D.2040102@bwh.harvard.edu> Wendy Plesniak is the artist. Ron On 12/13/12 7:13 AM, Julien Finet wrote: > Greetings from Bologna, > > We currently have an opaque logo for CTK (see top right logo here > http://www.commontk.org/index.php/Main_Page). > > It would be great if we could have a logo with transparent background or > even better in vectorial format (.svg ?). > > Who is the original author of the logo and could he/she provide those > other versions ? > > Thanks for your help, > Julien. -- Ron Kikinis, M.D., Robert Greenes Distinguished Director of Biomedical Informatics Professor of Radiology, Harvard Medical School Director, Surgical Planning Laboratory http://www.spl.harvard.edu/~kikinis From pieper at ibility.net Thu Dec 13 12:46:32 2012 From: pieper at ibility.net (Steve Pieper) Date: Thu, 13 Dec 2012 07:46:32 -0500 Subject: [Ctk-developers] CTK logo In-Reply-To: <50C9CB1D.2040102@bwh.harvard.edu> References: <50C9CB1D.2040102@bwh.harvard.edu> Message-ID: I'll check with Wendy to see if we can find the original artwork files. -Steve On Thu, Dec 13, 2012 at 7:33 AM, Ron Kikinis wrote: > Wendy Plesniak is the artist. > Ron > > > On 12/13/12 7:13 AM, Julien Finet wrote: > >> Greetings from Bologna, >> >> We currently have an opaque logo for CTK (see top right logo here >> http://www.commontk.org/index.**php/Main_Page >> ). >> >> It would be great if we could have a logo with transparent background or >> even better in vectorial format (.svg ?). >> >> Who is the original author of the logo and could he/she provide those >> other versions ? >> >> Thanks for your help, >> Julien. >> > > -- > Ron Kikinis, M.D., > Robert Greenes Distinguished Director of Biomedical Informatics > Professor of Radiology, Harvard Medical School > Director, Surgical Planning Laboratory > http://www.spl.harvard.edu/~**kikinis > ______________________________**_________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-**bin/mailman/listinfo/ctk-**developers > -------------- next part -------------- An HTML attachment was scrubbed... URL: From sergio.vera at alma3d.com Tue Dec 18 10:17:46 2012 From: sergio.vera at alma3d.com (Sergio Vera) Date: Tue, 18 Dec 2012 11:17:46 +0100 Subject: [Ctk-developers] CTK-Plugins Cycle dependencing detected Message-ID: Hello! I'm following the tutorial on the CTK website, but I'm having problems with plugin dependencies cycles I have a Top level CMakeLists.txt cmake_minimum_required(VERSION 2.8) PROJECT(CoreApp) FIND_PACKAGE(Qt4 REQUIRED) INCLUDE(${QT_USE_FILE}) # include UseQt4.cmake FIND_PACKAGE(CTK REQUIRED) INCLUDE(${CTK_USE_FILE}) # include UseCTK.cmake macro(GetMyTargetLibraries all_target_libraries varname) set(re_ctkplugin "^com_alma_[a-zA-Z0-9_]+$") set(_tmp_list) list(APPEND _tmp_list ${all_target_libraries}) ctkMacroListFilter(_tmp_list re_ctkplugin OUTPUT_VARIABLE ${varname}) endmacro() set(plugins Plugins/com.alma.rd.trackerlistenerservice:ON ) ctkMacroSetupPlugins(${plugins}) add_subdirectory(${CMAKE_CURRENT_SOURCE_DIR}/CoreApps) and inside a Plugins/com.alma.rd.trackerlistenerservice folter I have another CMakeLists.txt PROJECT(com_alma_rd_trackerlistenerservice) set(PLUGIN_export_directive "com_alma_rd_trackerlistenerservice_EXPORT") # No OpenIGTLink yet set(PLUGIN_SRCS TrackerListenerService.cpp ) # Files which should be processed by Qts moc set(PLUGIN_MOC_SRCS ) # Qt Designer files which should be processed by Qts uic set(PLUGIN_UI_FORMS ) # QRC Files which should be compiled into the plugin set(PLUGIN_resources ) #Compute the plugin dependencies ctkFunctionGetTargetLibraries(PLUGIN_target_libraries) ctkMacroBuildPlugin( NAME ${PROJECT_NAME} EXPORT_DIRECTIVE ${PLUGIN_export_directive} SRCS ${PLUGIN_SRCS} MOC_SRCS ${PLUGIN_MOC_SRCS} UI_FORMS ${PLUGIN_UI_FORMS} RESOURCES ${PLUGIN_resources} TARGET_LIBRARIES ${PLUGIN_target_libraries} and a target_libraroes.cmake with: set(target_libraries CTKPluginFrameWork ) after using Cmake-GUI on the top level CmakeLists.txt i obtain the following error: Generated: C:/work/pruebas-bin/CTKTest/DGraphInput-alldep-withext.txt CMake Error at C:/work/src/CTK/CMake/ctkMacroValidateBuildOptions.cmake:138 (message): Failed to obtain dependence path of com_alma_rd_trackerlistenerservice. 1 Cycle detected ! com_alma_rd_trackerlistenerservice com_alma_rd_trackerlistenerservice Call Stack (most recent call first): C:/work/src/CTK/CMake/ctkMacroSetupPlugins.cmake:186 (ctkMacroValidateBuildOptions) CMakeLists.txt:24 (ctkMacroSetupPlugins) Configuring incomplete, errors occurred! it seems that the plugins thinks that it depends on itself. Perhaps is a problem with the GetMyTargetLibraries macro? Any help will be highly appreciated many thanks. -- Sergio Vera Alma IT Systems C/ Vilana, 4B, 4? 1? 08022 Barcelona T. (+34) 932 380 592 www.alma3d.com -------------- next part -------------- An HTML attachment was scrubbed... URL: From s.zelzer at dkfz-heidelberg.de Tue Dec 18 10:56:37 2012 From: s.zelzer at dkfz-heidelberg.de (Sascha Zelzer) Date: Tue, 18 Dec 2012 11:56:37 +0100 Subject: [Ctk-developers] CTK-Plugins Cycle dependencing detected In-Reply-To: References: Message-ID: <50D04BE5.3060706@dkfz-heidelberg.de> Hi Sergio, inter-plugin dependencies are stated in the "manifest_headers.cmake" file in the plug-in folder, using the "Require-Plugin" header. If this file exists in your plug-in (it is optional), please check its contents. Your CMake code below looks correct. - Sascha On 12/18/2012 11:17 AM, Sergio Vera wrote: > Hello! > > I'm following the tutorial on the CTK website, but I'm having problems > with plugin dependencies cycles > > I have a Top level CMakeLists.txt > > cmake_minimum_required(VERSION 2.8) > PROJECT(CoreApp) > > FIND_PACKAGE(Qt4 REQUIRED) > INCLUDE(${QT_USE_FILE}) # include UseQt4.cmake > FIND_PACKAGE(CTK REQUIRED) > INCLUDE(${CTK_USE_FILE}) # include UseCTK.cmake > > macro(GetMyTargetLibraries all_target_libraries varname) > set(re_ctkplugin "^com_alma_[a-zA-Z0-9_]+$") > set(_tmp_list) > list(APPEND _tmp_list ${all_target_libraries}) > ctkMacroListFilter(_tmp_list re_ctkplugin OUTPUT_VARIABLE ${varname}) > endmacro() > > set(plugins > Plugins/com.alma.rd.trackerlistenerservice:ON > ) > ctkMacroSetupPlugins(${plugins}) > add_subdirectory(${CMAKE_CURRENT_SOURCE_DIR}/CoreApps) > > and inside a Plugins/com.alma.rd.trackerlistenerservice folter I have > another CMakeLists.txt > > PROJECT(com_alma_rd_trackerlistenerservice) > set(PLUGIN_export_directive "com_alma_rd_trackerlistenerservice_EXPORT") > > # No OpenIGTLink yet > > set(PLUGIN_SRCS > TrackerListenerService.cpp > ) > # Files which should be processed by Qts moc > set(PLUGIN_MOC_SRCS > ) > # Qt Designer files which should be processed by Qts uic > set(PLUGIN_UI_FORMS > ) > # QRC Files which should be compiled into the plugin > set(PLUGIN_resources > ) > #Compute the plugin dependencies > ctkFunctionGetTargetLibraries(PLUGIN_target_libraries) > ctkMacroBuildPlugin( > NAME ${PROJECT_NAME} > EXPORT_DIRECTIVE ${PLUGIN_export_directive} > SRCS ${PLUGIN_SRCS} > MOC_SRCS ${PLUGIN_MOC_SRCS} > UI_FORMS ${PLUGIN_UI_FORMS} > RESOURCES ${PLUGIN_resources} > TARGET_LIBRARIES ${PLUGIN_target_libraries} > > and a target_libraroes.cmake with: > > set(target_libraries > CTKPluginFrameWork > ) > > after using Cmake-GUI on the top level CmakeLists.txt i obtain the > following error: > > Generated: C:/work/pruebas-bin/CTKTest/DGraphInput-alldep-withext.txt > > CMake Error at > C:/work/src/CTK/CMake/ctkMacroValidateBuildOptions.cmake:138 (message): > > Failed to obtain dependence path of com_alma_rd_trackerlistenerservice. > > 1 > > Cycle detected ! > > com_alma_rd_trackerlistenerservice > > com_alma_rd_trackerlistenerservice > > Call Stack (most recent call first): > > C:/work/src/CTK/CMake/ctkMacroSetupPlugins.cmake:186 > (ctkMacroValidateBuildOptions) > > CMakeLists.txt:24 (ctkMacroSetupPlugins) > > Configuring incomplete, errors occurred! > > > it seems that the plugins thinks that it depends on itself. Perhaps is > a problem with the GetMyTargetLibraries macro? > > > Any help will be highly appreciated > > > many thanks. > > > -- > Sergio Vera > > Alma IT Systems > C/ Vilana, 4B, 4? 1? > 08022 Barcelona > T. (+34) 932 380 592 > www.alma3d.com -------------- next part -------------- An HTML attachment was scrubbed... URL: From sergio.vera at alma3d.com Tue Dec 18 12:01:54 2012 From: sergio.vera at alma3d.com (Sergio Vera) Date: Tue, 18 Dec 2012 13:01:54 +0100 Subject: [Ctk-developers] CTK-Plugins Cycle dependencing detected In-Reply-To: <50D04BE5.3060706@dkfz-heidelberg.de> References: <50D04BE5.3060706@dkfz-heidelberg.de> Message-ID: Hi Sascha, thanks for your reply You got it... I had an error on that file Many thanks! On Tue, Dec 18, 2012 at 11:56 AM, Sascha Zelzer wrote: > Hi Sergio, > > inter-plugin dependencies are stated in the "manifest_headers.cmake" file > in the plug-in folder, using the "Require-Plugin" header. If this file > exists in your plug-in (it is optional), please check its contents. > > Your CMake code below looks correct. > > - Sascha > > > On 12/18/2012 11:17 AM, Sergio Vera wrote: > > Hello! > > I'm following the tutorial on the CTK website, but I'm having problems > with plugin dependencies cycles > > I have a Top level CMakeLists.txt > > cmake_minimum_required(VERSION 2.8) > PROJECT(CoreApp) > > FIND_PACKAGE(Qt4 REQUIRED) > INCLUDE(${QT_USE_FILE}) # include UseQt4.cmake > FIND_PACKAGE(CTK REQUIRED) > INCLUDE(${CTK_USE_FILE}) # include UseCTK.cmake > > macro(GetMyTargetLibraries all_target_libraries varname) > set(re_ctkplugin "^com_alma_[a-zA-Z0-9_]+$") > set(_tmp_list) > list(APPEND _tmp_list ${all_target_libraries}) > ctkMacroListFilter(_tmp_list re_ctkplugin OUTPUT_VARIABLE ${varname}) > endmacro() > > set(plugins > Plugins/com.alma.rd.trackerlistenerservice:ON > ) > ctkMacroSetupPlugins(${plugins}) > add_subdirectory(${CMAKE_CURRENT_SOURCE_DIR}/CoreApps) > > and inside a Plugins/com.alma.rd.trackerlistenerservice folter I have > another CMakeLists.txt > > PROJECT(com_alma_rd_trackerlistenerservice) > set(PLUGIN_export_directive "com_alma_rd_trackerlistenerservice_EXPORT") > > # No OpenIGTLink yet > > set(PLUGIN_SRCS > TrackerListenerService.cpp > ) > # Files which should be processed by Qts moc > set(PLUGIN_MOC_SRCS > ) > # Qt Designer files which should be processed by Qts uic > set(PLUGIN_UI_FORMS > ) > # QRC Files which should be compiled into the plugin > set(PLUGIN_resources > ) > #Compute the plugin dependencies > ctkFunctionGetTargetLibraries(PLUGIN_target_libraries) > ctkMacroBuildPlugin( > NAME ${PROJECT_NAME} > EXPORT_DIRECTIVE ${PLUGIN_export_directive} > SRCS ${PLUGIN_SRCS} > MOC_SRCS ${PLUGIN_MOC_SRCS} > UI_FORMS ${PLUGIN_UI_FORMS} > RESOURCES ${PLUGIN_resources} > TARGET_LIBRARIES ${PLUGIN_target_libraries} > > and a target_libraroes.cmake with: > > set(target_libraries > CTKPluginFrameWork > ) > > after using Cmake-GUI on the top level CmakeLists.txt i obtain the > following error: > > Generated: C:/work/pruebas-bin/CTKTest/DGraphInput-alldep-withext.txt > > CMake Error at > C:/work/src/CTK/CMake/ctkMacroValidateBuildOptions.cmake:138 (message): > > Failed to obtain dependence path of com_alma_rd_trackerlistenerservice. > > 1 > > Cycle detected ! > > com_alma_rd_trackerlistenerservice > > com_alma_rd_trackerlistenerservice > > Call Stack (most recent call first): > > C:/work/src/CTK/CMake/ctkMacroSetupPlugins.cmake:186 > (ctkMacroValidateBuildOptions) > > CMakeLists.txt:24 (ctkMacroSetupPlugins) > > Configuring incomplete, errors occurred! > > > it seems that the plugins thinks that it depends on itself. Perhaps is a > problem with the GetMyTargetLibraries macro? > > > Any help will be highly appreciated > > > many thanks. > > > -- > Sergio Vera > > Alma IT Systems > C/ Vilana, 4B, 4? 1? > 08022 Barcelona > T. (+34) 932 380 592 > www.alma3d.com > > > -- Sergio Vera Alma IT Systems C/ Vilana, 4B, 4? 1? 08022 Barcelona T. (+34) 932 380 592 www.alma3d.com -------------- next part -------------- An HTML attachment was scrubbed... URL: From M.Nolden at Dkfz-Heidelberg.de Wed Dec 19 08:23:37 2012 From: M.Nolden at Dkfz-Heidelberg.de (Nolden, Marco) Date: Wed, 19 Dec 2012 09:23:37 +0100 Subject: [Ctk-developers] CTK, DCMTK and Debian In-Reply-To: References: Message-ID: Hi, during the Bologna hackfest I succeeded (with the help of Michael!) to build CTK again with a plain DCMTK 3.6.0 and also fixed compatibility with Debian's VTK 5.8. I created a summary page of the status on the wiki: http://www.commontk.org/index.php/Debian_Packaging . Maybe other people who did some work in that area could add some comments or useful links. Best Marco -----Urspr?ngliche Nachricht----- Von: ctk-developers-bounces at commontk.org [mailto:ctk-developers-bounces at commontk.org] Im Auftrag von Nolden, Marco Gesendet: Dienstag, 11. Dezember 2012 17:03 An: Michael Onken; ctk-developers at commontk.org Cc: dicom at offis.de Betreff: Re: [Ctk-developers] CTK, DCMTK and Debian Hi Michael, I'm currently at the hackfest in Bologna and can further investigate your suggestion. I tried to integrate a recent scu.cc in CTK: there are a lot of compile errors related to changes in the logging or error constants on the DCMTK side: https://github.com/nolden/ctk-debian/issues/1 Any chance to back port also the required stuff or should we just use an older scu? Best, Marco -----Urspr?ngliche Nachricht----- Von: ctk-developers-bounces at commontk.org [mailto:ctk-developers-bounces at commontk.org] Im Auftrag von Michael Onken Gesendet: Dienstag, 30. Oktober 2012 12:53 An: ctk-developers at commontk.org Betreff: Re: [Ctk-developers] CTK, DCMTK and Debian Hi Marco, On 25.10.2012 17:16, Marco Nolden wrote: > 2. DCMTK in debian is version 3.6.0. This unfortunately lacks the SCU > functionality we're using for Query/Retrieve. Before switching to > 3.6.1 in the superbuild we had a backported version of the new SCU > class in the CTK repository (ctkDcmSCU). I tried to reactivate this > backport in my modified package but it failed to compile. I think the > best way for this would be to fix this in CTK itself by putting the > new SCU class there again, make it compile and add some CMake logic > based on the DCMTK version to choose the right class. But I'm not sure > which other non-compatible changes we have that require DCMTK >= > 3.6.1. To my knowledge (which may be outdated) no new source code functionality besides DcmSCU enhancements are used in CTK. I would try to copy any recent DcmSCU.h/cc, rename the files (and classes) to CtkSCU.h/cc and use them in the CTK code instead. Then look how far you can get with that. However, there may have been changes in the BUILD infrastructure that you rely on but I do not have an overview what is used at the moment, or whether it is highly relevant for Debian builds. Best, Michael -- Dipl.-Inform. Michael Onken FuE Bereich Gesundheit | R&D Division Health OFFIS FuE Bereich Gesundheit | R&D Division Health Escherweg 2 - 26121 Oldenburg - Germany Phone/Fax.: +49 441 9722-149/111 E-Mail: onken at offis.de URL: http://www.offis.de _______________________________________________ Ctk-developers mailing list Ctk-developers at commontk.org http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers _______________________________________________ Ctk-developers mailing list Ctk-developers at commontk.org http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers From M.Nolden at Dkfz-Heidelberg.de Wed Dec 19 18:13:18 2012 From: M.Nolden at Dkfz-Heidelberg.de (Nolden, Marco) Date: Wed, 19 Dec 2012 19:13:18 +0100 Subject: [Ctk-developers] CTK, DCMTK and Debian Message-ID: Hi Dominique, Sounds great, thanks. CTK's super build currently uses an unpatched 5.10.0, so I guess it works. The config is here: https://github.com/commontk/CTK/blob/master/CMakeExternals/VTK.cmake For my tests in Bologna I used the VTK 5.8 that's currently included in Debian sid. I do not have much experience with debian packaging, so in my github the most useful addition is probably the version number generation code. I read a bit about git-based packaging but too many things were new to me. Do you think it would make sense to work on the package itself on github or is there an official debian location for that? Best Marco Von: Dominique Belhachemi [mailto:domibel.dd at gmail.com] Gesendet: Mittwoch, 19. Dezember 2012 16:00 An: Nolden, Marco Cc: ctk-developers at commontk.org Betreff: Re: [Ctk-developers] CTK, DCMTK and Debian Hi Marco, I can help with updating VTK+CTK in Debian Experimental. Does the current CTK work with an unpatched VTK 5.10? Thanks -Dominique On Wed, Dec 19, 2012 at 3:23 AM, Nolden, Marco > wrote: Hi, during the Bologna hackfest I succeeded (with the help of Michael!) to build CTK again with a plain DCMTK 3.6.0 and also fixed compatibility with Debian's VTK 5.8. I created a summary page of the status on the wiki: http://www.commontk.org/index.php/Debian_Packaging . Maybe other people who did some work in that area could add some comments or useful links. Best Marco -----Urspr?ngliche Nachricht----- Von: ctk-developers-bounces at commontk.org [mailto:ctk-developers-bounces at commontk.org] Im Auftrag von Nolden, Marco Gesendet: Dienstag, 11. Dezember 2012 17:03 An: Michael Onken; ctk-developers at commontk.org Cc: dicom at offis.de Betreff: Re: [Ctk-developers] CTK, DCMTK and Debian Hi Michael, I'm currently at the hackfest in Bologna and can further investigate your suggestion. I tried to integrate a recent scu.cc in CTK: there are a lot of compile errors related to changes in the logging or error constants on the DCMTK side: https://github.com/nolden/ctk-debian/issues/1 Any chance to back port also the required stuff or should we just use an older scu? Best, Marco -----Urspr?ngliche Nachricht----- Von: ctk-developers-bounces at commontk.org [mailto:ctk-developers-bounces at commontk.org] Im Auftrag von Michael Onken Gesendet: Dienstag, 30. Oktober 2012 12:53 An: ctk-developers at commontk.org Betreff: Re: [Ctk-developers] CTK, DCMTK and Debian Hi Marco, On 25.10.2012 17:16, Marco Nolden wrote: > 2. DCMTK in debian is version 3.6.0. This unfortunately lacks the SCU > functionality we're using for Query/Retrieve. Before switching to > 3.6.1 in the superbuild we had a backported version of the new SCU > class in the CTK repository (ctkDcmSCU). I tried to reactivate this > backport in my modified package but it failed to compile. I think the > best way for this would be to fix this in CTK itself by putting the > new SCU class there again, make it compile and add some CMake logic > based on the DCMTK version to choose the right class. But I'm not sure > which other non-compatible changes we have that require DCMTK >= > 3.6.1. To my knowledge (which may be outdated) no new source code functionality besides DcmSCU enhancements are used in CTK. I would try to copy any recent DcmSCU.h/cc, rename the files (and classes) to CtkSCU.h/cc and use them in the CTK code instead. Then look how far you can get with that. However, there may have been changes in the BUILD infrastructure that you rely on but I do not have an overview what is used at the moment, or whether it is highly relevant for Debian builds. Best, Michael -- Dipl.-Inform. Michael Onken FuE Bereich Gesundheit | R&D Division Health OFFIS FuE Bereich Gesundheit | R&D Division Health Escherweg 2 - 26121 Oldenburg - Germany Phone/Fax.: +49 441 9722-149/111 E-Mail: onken at offis.de URL: http://www.offis.de _______________________________________________ Ctk-developers mailing list Ctk-developers at commontk.org http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers _______________________________________________ Ctk-developers mailing list Ctk-developers at commontk.org http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers -------------- next part -------------- An HTML attachment was scrubbed... URL: From domibel at debian.org Thu Dec 20 04:24:18 2012 From: domibel at debian.org (Dominique Belhachemi) Date: Wed, 19 Dec 2012 23:24:18 -0500 Subject: [Ctk-developers] CTK, DCMTK and Debian In-Reply-To: References: Message-ID: Hi Marco, The current Debian sources for CTK are here: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ctk/trunk/debian/ I merged a few of your changes into the trunk. Unfortunately I am still running into compilation issues when specifying -DCTK_LIB_DICOM/Core:BOOL=ON In file included from /usr/include/dcmtk/ofstd/ofstring.h:65:0, from /usr/include/dcmtk/oflog/tstring.h:27, from /usr/include/dcmtk/oflog/streams.h:27, from /usr/include/dcmtk/oflog/loglevel.h:29, from /usr/include/dcmtk/oflog/logger.h:28, from /usr/include/dcmtk/oflog/oflog.h:35, from /usr/include/dcmtk/dcmdata/dctypes.h:34, from /usr/include/dcmtk/dcmdata/dcbytstr.h:35, from /usr/include/dcmtk/dcmdata/dcchrstr.h:48, from /usr/include/dcmtk/dcmdata/dcvrpn.h:35, from /tmp/ctk/trunk/ctk-0.1.0~git20121219/Libs/DICOM/Core/ctkDICOMModel.cpp:33: /usr/include/dcmtk/ofstd/ofstream.h:67:22: fatal error: iostream.h: No such file or directory I am using an older dcmtk (3.6.0-9), will try with a newer version soon. I also believe that the current github version contains your changes already. Your patch debian/patches/backport-of-dcmscu-from-dcmtk-3.6.1 doesn't apply cleanly and can probably removed. Any idea when CTK is using a plain pythonqt version? I would like to turn on another option as well. -DCTK_LIB_Scripting/Python/Core:BOOL=ON Cheers -Dominique On Wed, Dec 19, 2012 at 1:13 PM, Nolden, Marco wrote: > Hi Dominique,**** > > ** ** > > Sounds great, thanks. CTK?s super build currently uses an unpatched > 5.10.0, so I guess it works. The config is here: **** > > ** ** > > https://github.com/commontk/CTK/blob/master/CMakeExternals/VTK.cmake**** > > ** ** > > For my tests in Bologna I used the VTK 5.8 that?s currently included in > Debian sid.**** > > ** ** > > I do not have much experience with debian packaging, so in my github the > most useful addition is probably the version number generation code. I read > a bit about git-based packaging but too many things were new to me. Do you > think it would make sense to work on the package itself on github or is > there an official debian location for that?**** > > ** ** > > Best**** > > Marco**** > > ** ** > > ** ** > > ** ** > > ** ** > > *Von:* Dominique Belhachemi [mailto:domibel.dd at gmail.com] > > *Gesendet:* Mittwoch, 19. Dezember 2012 16:00 > *An:* Nolden, Marco > *Cc:* ctk-developers at commontk.org > *Betreff:* Re: [Ctk-developers] CTK, DCMTK and Debian**** > > ** ** > > Hi Marco,**** > > I can help with updating VTK+CTK in Debian Experimental. Does the current > CTK work with an unpatched VTK 5.10?**** > > Thanks**** > > -Dominique**** > > ** ** > > On Wed, Dec 19, 2012 at 3:23 AM, Nolden, Marco < > M.Nolden at dkfz-heidelberg.de> wrote:**** > > Hi, > > during the Bologna hackfest I succeeded (with the help of Michael!) to > build CTK again with a plain DCMTK 3.6.0 and also fixed compatibility with > Debian's VTK 5.8. I created a summary page of the status on the wiki: > http://www.commontk.org/index.php/Debian_Packaging . Maybe other people > who did some work in that area could add some comments or useful links. > > Best > Marco > > > -----Urspr?ngliche Nachricht----- > Von: ctk-developers-bounces at commontk.org [mailto: > ctk-developers-bounces at commontk.org] Im Auftrag von Nolden, Marco > Gesendet: Dienstag, 11. Dezember 2012 17:03 > An: Michael Onken; ctk-developers at commontk.org > Cc: dicom at offis.de**** > > Betreff: Re: [Ctk-developers] CTK, DCMTK and Debian > > Hi Michael, > > I'm currently at the hackfest in Bologna and can further investigate your > suggestion. I tried to integrate a recent scu.cc in CTK: there are a lot of > compile errors related to changes in the logging or error constants on the > DCMTK side: > > https://github.com/nolden/ctk-debian/issues/1 > > Any chance to back port also the required stuff or should we just use an > older scu? > > Best, > Marco > > > -----Urspr?ngliche Nachricht----- > Von: ctk-developers-bounces at commontk.org [mailto: > ctk-developers-bounces at commontk.org] Im Auftrag von Michael Onken > Gesendet: Dienstag, 30. Oktober 2012 12:53 > An: ctk-developers at commontk.org > Betreff: Re: [Ctk-developers] CTK, DCMTK and Debian > > Hi Marco, > > On 25.10.2012 17:16, Marco Nolden wrote: > > > 2. DCMTK in debian is version 3.6.0. This unfortunately lacks the SCU > > functionality we're using for Query/Retrieve. Before switching to > > 3.6.1 in the superbuild we had a backported version of the new SCU > > class in the CTK repository (ctkDcmSCU). I tried to reactivate this > > backport in my modified package but it failed to compile. I think the > > best way for this would be to fix this in CTK itself by putting the > > new SCU class there again, make it compile and add some CMake logic > > based on the DCMTK version to choose the right class. But I'm not sure > > which other non-compatible changes we have that require DCMTK >= > > 3.6.1. > > To my knowledge (which may be outdated) no new source code functionality > besides DcmSCU enhancements are used in CTK. > > I would try to copy any recent DcmSCU.h/cc, rename the files (and > classes) to CtkSCU.h/cc and use them in the CTK code instead. Then look > how far you can get with that. > > However, there may have been changes in the BUILD infrastructure that you > rely on but I do not have an overview what is used at the moment, or > whether it is highly relevant for Debian builds. > > Best, > Michael > > -- > Dipl.-Inform. Michael Onken > FuE Bereich Gesundheit | R&D Division Health > > OFFIS > FuE Bereich Gesundheit | R&D Division Health Escherweg 2 - 26121 Oldenburg > - Germany > Phone/Fax.: +49 441 9722-149/111 > E-Mail: onken at offis.de > URL: http://www.offis.de > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers**** > > ** ** > -------------- next part -------------- An HTML attachment was scrubbed... URL: From m.nolden at dkfz-heidelberg.de Thu Dec 20 16:47:28 2012 From: m.nolden at dkfz-heidelberg.de (Marco Nolden) Date: Thu, 20 Dec 2012 17:47:28 +0100 Subject: [Ctk-developers] CTK, DCMTK and Debian In-Reply-To: References: Message-ID: <50D34120.9050508@dkfz-heidelberg.de> On 12/20/2012 05:24 AM, Dominique Belhachemi wrote: > Hi Marco, Hi Dominique, > > The current Debian sources for CTK are here: > http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ctk/trunk/debian/ > Thanks, I put that link on our CTK Debian Wiki page. > I merged a few of your changes into the trunk. Unfortunately I am still > running into compilation issues when specifying > -DCTK_LIB_DICOM/Core:BOOL=ON > > In file included from /usr/include/dcmtk/ofstd/ofstring.h:65:0, > from /usr/include/dcmtk/oflog/tstring.h:27, > from /usr/include/dcmtk/oflog/streams.h:27, > from /usr/include/dcmtk/oflog/loglevel.h:29, > from /usr/include/dcmtk/oflog/logger.h:28, > from /usr/include/dcmtk/oflog/oflog.h:35, > from /usr/include/dcmtk/dcmdata/dctypes.h:34, > from /usr/include/dcmtk/dcmdata/dcbytstr.h:35, > from /usr/include/dcmtk/dcmdata/dcchrstr.h:48, > from /usr/include/dcmtk/dcmdata/dcvrpn.h:35, > from > /tmp/ctk/trunk/ctk-0.1.0~git20121219/Libs/DICOM/Core/ctkDICOMModel.cpp:33: > /usr/include/dcmtk/ofstd/ofstream.h:67:22: fatal error: iostream.h: No > such file or directory > > I am using an older dcmtk (3.6.0-9), will try with a newer version soon. > This is the fix, it is actually a workaround for a debian bug in libdcmtk2-dev (#637687): https://github.com/nolden/CTK/commit/f8a38a141a4d3dc1bf8ef5a95a8b3da1def7bfb1 The other one that is not included in CTK and won't be is: https://github.com/nolden/CTK/commit/6946f75a100ce0950226779e71bed34dce624599 > I also believe that the current github version contains your changes > already. Your patch debian/patches/backport-of-dcmscu-from-dcmtk-3.6.1 > doesn't apply cleanly and can probably removed. > > Any idea when CTK is using a plain pythonqt version? I would like to > turn on another option as well. > -DCTK_LIB_Scripting/Python/Core:BOOL=ON > JC is working on that and already submitted most patches to upstream. We somewhat agreed that for a first version of a CTK debian package we could leave it OFF and turn it on later. Also it could make sense to split the CTK package at some point into ctk, ctk-pluginfw, ctk-widgets etc. > Cheers > -Dominique > Best Marco > > On Wed, Dec 19, 2012 at 1:13 PM, Nolden, Marco > > wrote: > > Hi Dominique,____ > > __ __ > > Sounds great, thanks. CTK?s super build currently uses an unpatched > 5.10.0, so I guess it works. The config is here: ____ > > __ __ > > https://github.com/commontk/CTK/blob/master/CMakeExternals/VTK.cmake____ > > __ __ > > For my tests in Bologna I used the VTK 5.8 that?s currently included > in Debian sid.____ > > __ __ > > I do not have much experience with debian packaging, so in my github > the most useful addition is probably the version number generation > code. I read a bit about git-based packaging but too many things > were new to me. Do you think it would make sense to work on the > package itself on github or is there an official debian location for > that?____ > > __ __ > > Best____ > > Marco____ > > __ __ > > __ __ > > __ __ > > __ __ > > *Von:*Dominique Belhachemi [mailto:domibel.dd at gmail.com] > *Gesendet:* Mittwoch, 19. Dezember 2012 16:00 > *An:* Nolden, Marco > *Cc:* ctk-developers at commontk.org > *Betreff:* Re: [Ctk-developers] CTK, DCMTK and Debian____ > > __ __ > > Hi Marco,____ > > I can help with updating VTK+CTK in Debian Experimental. Does the > current CTK work with an unpatched VTK 5.10?____ > > Thanks____ > > -Dominique____ > > __ __ > > On Wed, Dec 19, 2012 at 3:23 AM, Nolden, Marco > > > wrote:____ > > Hi, > > during the Bologna hackfest I succeeded (with the help of Michael!) > to build CTK again with a plain DCMTK 3.6.0 and also fixed > compatibility with Debian's VTK 5.8. I created a summary page of > the status on the wiki: > http://www.commontk.org/index.php/Debian_Packaging . Maybe other > people who did some work in that area could add some comments or > useful links. > > Best > Marco > > > -----Urspr?ngliche Nachricht----- > Von: ctk-developers-bounces at commontk.org > > [mailto:ctk-developers-bounces at commontk.org > ] Im Auftrag von Nolden, > Marco > Gesendet: Dienstag, 11. Dezember 2012 17:03 > An: Michael Onken; ctk-developers at commontk.org > > Cc: dicom at offis.de ____ > > Betreff: Re: [Ctk-developers] CTK, DCMTK and Debian > > Hi Michael, > > I'm currently at the hackfest in Bologna and can further investigate > your suggestion. I tried to integrate a recent scu.cc in CTK: there > are a lot of compile errors related to changes in the logging or > error constants on the DCMTK side: > > https://github.com/nolden/ctk-debian/issues/1 > > Any chance to back port also the required stuff or should we just > use an older scu? > > Best, > Marco > > > -----Urspr?ngliche Nachricht----- > Von: ctk-developers-bounces at commontk.org > > [mailto:ctk-developers-bounces at commontk.org > ] Im Auftrag von Michael > Onken > Gesendet: Dienstag, 30. Oktober 2012 12:53 > An: ctk-developers at commontk.org > Betreff: Re: [Ctk-developers] CTK, DCMTK and Debian > > Hi Marco, > > On 25.10.2012 17:16, Marco Nolden wrote: > > > 2. DCMTK in debian is version 3.6.0. This unfortunately lacks the SCU > > functionality we're using for Query/Retrieve. Before switching to > > 3.6.1 in the superbuild we had a backported version of the new SCU > > class in the CTK repository (ctkDcmSCU). I tried to reactivate this > > backport in my modified package but it failed to compile. I think the > > best way for this would be to fix this in CTK itself by putting the > > new SCU class there again, make it compile and add some CMake logic > > based on the DCMTK version to choose the right class. But I'm not > sure > > which other non-compatible changes we have that require DCMTK >= > > 3.6.1. > > To my knowledge (which may be outdated) no new source code > functionality besides DcmSCU enhancements are used in CTK. > > I would try to copy any recent DcmSCU.h/cc, rename the files (and > classes) to CtkSCU.h/cc and use them in the CTK code instead. Then > look how far you can get with that. > > However, there may have been changes in the BUILD infrastructure > that you rely on but I do not have an overview what is used at the > moment, or whether it is highly relevant for Debian builds. > > Best, > Michael > > -- > Dipl.-Inform. Michael Onken > FuE Bereich Gesundheit | R&D Division Health > > OFFIS > FuE Bereich Gesundheit | R&D Division Health Escherweg 2 - 26121 > Oldenburg - Germany > Phone/Fax.: +49 441 9722-149/111 > E-Mail: onken at offis.de > URL: http://www.offis.de > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers > _______________________________________________ > Ctk-developers mailing list > Ctk-developers at commontk.org > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers____ > > __ __ > > -- ---------------------------------------------------------------------- Dipl.-Inform. Med. Marco Nolden Deutsches Krebsforschungszentrum (German Cancer Research Center) Div. Medical & Biological Informatics Tel: (+49) 6221-42 2325 Im Neuenheimer Feld 280 Fax: (+49) 6221-42 2345 D-69120 Heidelberg eMail: M.Nolden at dkfz.de From pieper at ibility.net Fri Dec 21 19:57:39 2012 From: pieper at ibility.net (Steve Pieper) Date: Fri, 21 Dec 2012 14:57:39 -0500 Subject: [Ctk-developers] backed out accidental commit Message-ID: Hi Folks - I accidentally pushed the wrong git branch a few moments ago and had to reset it - the history looks correct to me now, but hopefully the transient state of the repository didn't screw anyone up. Let me know if there's anything that needs fixing. I had to re-merge Sanhkesh's changes. Thanks and sorry for the confusion, -Steve -------------- next part -------------- An HTML attachment was scrubbed... URL: From sergio.vera at alma3d.com Thu Dec 27 14:29:22 2012 From: sergio.vera at alma3d.com (Sergio Vera) Date: Thu, 27 Dec 2012 15:29:22 +0100 Subject: [Ctk-developers] plugin dll not found Message-ID: Hello all, I have my test CTK plugin configured with cmake (its a dummy plugin, no services registered yet, just the minimum ctkPluginActivator methods) I build my project, and when I try to start my empty plugin from an executable using ctkPluginFrameworkLauncher::addSearchPath("C:\\work\\pruebas-bin\\CTKTest\\Plugins\\com.alma.rd.tracker\\Release"); succeeded = ctkPluginFrameworkLauncher::start("com.alma.rd.tracker"); I get: ctkRuntimeException: ctkPlugin start failed with a ctkException cause(): Loading plugin failed: The shared library was not found. I have a proper Q_EXPORT_PLUGIN2(com_alma_rd_tracker, TrackerListenerActivator) in my dummy plugin and set(PLUGIN_export_directive "com_alma_rd_tracker_EXPORT") in my plugin's CmakeLists.txt What can be wrong? I've tried manually moving the generated dll file next to my exe file to no avail. many thanks -- Sergio Vera Alma IT Systems C/ Vilana, 4B, 4? 1? 08022 Barcelona T. (+34) 932 380 592 www.alma3d.com -------------- next part -------------- An HTML attachment was scrubbed... URL: From s.zelzer at dkfz-heidelberg.de Thu Dec 27 16:10:07 2012 From: s.zelzer at dkfz-heidelberg.de (Sascha Zelzer) Date: Thu, 27 Dec 2012 17:10:07 +0100 Subject: [Ctk-developers] plugin dll not found In-Reply-To: References: Message-ID: <50DC72DF.6020809@dkfz-heidelberg.de> Hi Sergio, I guess you verified that the file at C:\\work\\pruebas-bin\\CTKTest\\Plugins\\com.alma.rd.tracker\\Release\libcom_alma_rd_tracker.dll really exists? Did you also try with a path like C:/work/pruebas-bin/CTKTest/Plugins/com.alma.rd.tracker/Release ? Best, Sascha On 12/27/2012 03:29 PM, Sergio Vera wrote: > > Hello all, > > I have my test CTK plugin configured with cmake (its a dummy plugin, > no services registered yet, just the minimum ctkPluginActivator methods) > > I build my project, and when I try to start my empty plugin from an > executable using > > ctkPluginFrameworkLauncher::addSearchPath("C:\\work\\pruebas-bin\\CTKTest\\Plugins\\com.alma.rd.tracker\\Release"); > succeeded = ctkPluginFrameworkLauncher::start("com.alma.rd.tracker"); > > I get: > > ctkRuntimeException: ctkPlugin start failed > with a ctkException cause(): > Loading plugin failed: The shared library was not found. > > I have a proper > Q_EXPORT_PLUGIN2(com_alma_rd_tracker, TrackerListenerActivator) in my > dummy plugin > > and > set(PLUGIN_export_directive "com_alma_rd_tracker_EXPORT") in my > plugin's CmakeLists.txt > > What can be wrong? I've tried manually moving the generated dll file > next to my exe file to no avail. > > many thanks > > -- > Sergio Vera > > Alma IT Systems > C/ Vilana, 4B, 4? 1? > 08022 Barcelona > T. (+34) 932 380 592 > www.alma3d.com -------------- next part -------------- An HTML attachment was scrubbed... URL: From sergio.vera at alma3d.com Thu Dec 27 16:29:47 2012 From: sergio.vera at alma3d.com (Sergio Vera) Date: Thu, 27 Dec 2012 17:29:47 +0100 Subject: [Ctk-developers] plugin dll not found In-Reply-To: <50DC72DF.6020809@dkfz-heidelberg.de> References: <50DC72DF.6020809@dkfz-heidelberg.de> Message-ID: Hi Sascha, Indeed, I've checked that the file exists. (I even tried copying it to other directories, like VC working directory and exe directory to no avail) Using the / instead of \\ is not working either. I have some std::cout statements in plugin constructor and start method that cannot be seen. thanks On Thu, Dec 27, 2012 at 5:10 PM, Sascha Zelzer wrote: > Hi Sergio, > > I guess you verified that the file at > > > C:\\work\\pruebas-bin\\CTKTest\\Plugins\\com.alma.rd.tracker\\Release\libcom_alma_rd_tracker.dll > > really exists? Did you also try with a path like > > C:/work/pruebas-bin/CTKTest/Plugins/com.alma.rd.tracker/Release > > ? > > Best, > Sascha > > > On 12/27/2012 03:29 PM, Sergio Vera wrote: > > > Hello all, > > I have my test CTK plugin configured with cmake (its a dummy plugin, no > services registered yet, just the minimum ctkPluginActivator methods) > > I build my project, and when I try to start my empty plugin from an > executable using > > > ctkPluginFrameworkLauncher::addSearchPath("C:\\work\\pruebas-bin\\CTKTest\\Plugins\\com.alma.rd.tracker\\Release"); > succeeded = ctkPluginFrameworkLauncher::start("com.alma.rd.tracker"); > > I get: > > ctkRuntimeException: ctkPlugin start failed > with a ctkException cause(): > Loading plugin failed: The shared library was not found. > > I have a proper > Q_EXPORT_PLUGIN2(com_alma_rd_tracker, TrackerListenerActivator) in my > dummy plugin > > and > set(PLUGIN_export_directive "com_alma_rd_tracker_EXPORT") in my plugin's > CmakeLists.txt > > What can be wrong? I've tried manually moving the generated dll file > next to my exe file to no avail. > > many thanks > > -- > Sergio Vera > > Alma IT Systems > C/ Vilana, 4B, 4? 1? > 08022 Barcelona > T. (+34) 932 380 592 > www.alma3d.com > > > -- Sergio Vera Alma IT Systems C/ Vilana, 4B, 4? 1? 08022 Barcelona T. (+34) 932 380 592 www.alma3d.com -------------- next part -------------- An HTML attachment was scrubbed... URL: From s.zelzer at dkfz-heidelberg.de Thu Dec 27 16:45:23 2012 From: s.zelzer at dkfz-heidelberg.de (Sascha Zelzer) Date: Thu, 27 Dec 2012 17:45:23 +0100 Subject: [Ctk-developers] plugin dll not found In-Reply-To: References: <50DC72DF.6020809@dkfz-heidelberg.de> Message-ID: <50DC7B23.6060701@dkfz-heidelberg.de> Hi, the error you get is quite clear: "The shared library was not found". I assume that this really is the problem. You could try to put a break-point on ctkPluginFrameworkLauncher.cpp:153 and check the contents of the "pluginPath" variable. I will let you know if I can think of anything else. - Sascha On 12/27/2012 05:29 PM, Sergio Vera wrote: > Hi Sascha, > > Indeed, I've checked that the file exists. (I even tried copying it to > other directories, like VC working directory and exe directory to no > avail) > > Using the / instead of \\ is not working either. > > I have some std::cout statements in plugin constructor and start > method that cannot be seen. > > thanks > > > > On Thu, Dec 27, 2012 at 5:10 PM, Sascha Zelzer > > wrote: > > Hi Sergio, > > I guess you verified that the file at > > C:\\work\\pruebas-bin\\CTKTest\\Plugins\\com.alma.rd.tracker\\Release\libcom_alma_rd_tracker.dll > > really exists? Did you also try with a path like > > C:/work/pruebas-bin/CTKTest/Plugins/com.alma.rd.tracker/Release > > ? > > Best, > Sascha > > > On 12/27/2012 03:29 PM, Sergio Vera wrote: >> >> Hello all, >> >> I have my test CTK plugin configured with cmake (its a dummy >> plugin, no services registered yet, just the minimum >> ctkPluginActivator methods) >> >> I build my project, and when I try to start my empty plugin from >> an executable using >> >> ctkPluginFrameworkLauncher::addSearchPath("C:\\work\\pruebas-bin\\CTKTest\\Plugins\\com.alma.rd.tracker\\Release"); >> succeeded = ctkPluginFrameworkLauncher::start("com.alma.rd.tracker"); >> >> I get: >> >> ctkRuntimeException: ctkPlugin start failed >> with a ctkException cause(): >> Loading plugin failed: The shared library was not found. >> >> I have a proper >> Q_EXPORT_PLUGIN2(com_alma_rd_tracker, TrackerListenerActivator) >> in my dummy plugin >> >> and >> set(PLUGIN_export_directive "com_alma_rd_tracker_EXPORT") in my >> plugin's CmakeLists.txt >> >> What can be wrong? I've tried manually moving the generated dll >> file next to my exe file to no avail. >> >> many thanks >> >> -- >> Sergio Vera >> >> Alma IT Systems >> C/ Vilana, 4B, 4? 1? >> 08022 Barcelona >> T. (+34) 932 380 592 >> www.alma3d.com > > > > > -- > Sergio Vera > > Alma IT Systems > C/ Vilana, 4B, 4? 1? > 08022 Barcelona > T. (+34) 932 380 592 > www.alma3d.com -------------- next part -------------- An HTML attachment was scrubbed... URL: From a.frangi at sheffield.ac.uk Tue Dec 25 13:19:40 2012 From: a.frangi at sheffield.ac.uk (Alejandro Frangi) Date: Tue, 25 Dec 2012 13:19:40 -0000 Subject: [Ctk-developers] CISTIB Scientific Software Developer - Medical Image Analysis and Modelling - University of Sheffield, UK Message-ID: <000301cde2a2$80b53130$821f9390$@sheffield.ac.uk> CISTIB Scientific Software Developer - Medical Image Analysis and Modelling - University of Sheffield University of Sheffield Job Reference Number: UOS005805 Contract Type: Fixed-term for 3 years Faculty: Faculty of Engineering Salary: Grade 7, ?28,685 ? ?36,298 per annum Closing Date: 7 January 2013 Summary: The Centre for Computational Imaging and Simulation Technologies in Biomedicine (CISTIB) at the University of Sheffield is part of INSIGNEO Institute for in silico Medicine. CISTIB focuses on algorithmic and applied research in the areas of computational imaging, modelling and simulation. CISTIB is working at the interface between different areas of computational imaging and modelling: medical analysis, statistical shape analysis, pattern recognition, image-based computational physiology, and personalised virtual interventions. The centre hosts academic members from the University of Sheffield as well as Research Fellows, Research Associates, PhD Students and Scientific Software Developers forming a cross-disciplinary team. The Scientific Software Developer (SSD) provides services and expertise relating to the development of codes and software applications used by CISTIB researchers. The team works with researchers across the group to develop best practice for research programming. The SSD will be a critical contributor to the implementation of CISTIB?s Scientific Software Development Roadmap, aimed at managing the implementation of software technologies necessary to support portfolio of CISTIB projects, and which provides software tools and systems aligned with CISTIB research, along with industrial and clinical translation strategies. The ideal candidate shall have considerable experience in scientific software development and clinical software prototyping in one or several of the research and clinical areas of expertise relevant to CISTIB. The successful candidate will be experienced in software engineering practices ranging from gathering software and system requirements, all the way up to designing, testing, coding, integrating, releasing, deploying and maintaining object oriented software, primarily in C++. Additional experience in IT system administration and frameworks for effective software engineering will be highly valued. Previous experiences in the area of software development related to the Virtual Physiological Human initiative will be positively evaluated, but are not mandatory. The ideal candidate will be experienced in working as a member of a collaborative development group, sharing a common vision and goals on an environment open to continuous improvement. This post is fixed-term for 3 years. More information http://www.jobs.ac.uk/job/AFS719/scientific-software-developer/ or contact a.frangi at sheffield.ac.uk, z.a.taylor at sheffield.ac.uk, a.marzo at sheffield.ac.uk Apply -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: image001.gif Type: image/gif Size: 1278 bytes Desc: not available URL: