From wsales at gmail.com  Wed Jun  9 14:46:43 2010
From: wsales at gmail.com (Wagner Sales)
Date: Wed, 9 Jun 2010 11:46:43 -0300
Subject: [Ctk-developers] CTK Compile failure due a missing source file
Message-ID: <AANLkTingUTaYHeuTCAeFquloZMoaHULZXK2SnW0qkD7L@mail.gmail.com>

Hi,

I'm downloading and compiling CTK automatically 2 times per week.
Well, by now CTK aren't compiling due the following error:

CMake Error in Applications/ctkCLIPluginExplorer/CMakeLists.txt:
  Cannot find source file "ctkCLIPluginExplorerMain.cxx".  Tried extensions
  .c .C .c++ .cc .cpp .cxx .m .M .mm .h .hh .h++ .hm .hpp .hxx .in .txx


-- Build files have been written to: /media/data/Builds/CTK/CTK-build
make[2]: *** [CMakeExternals/Stamp/CTK-Configure/CTK-Configure-configure]
Error 1
make[1]: *** [CMakeFiles/CTK-Configure.dir/all] Error 2
make: *** [all] Error 2

Or the file are not added in repository or CMakeLists.txt are outdated.

Regards,

Wagner Sales

PS: Since this is my first post, please someone, if possible, answer
this mail just to test if the list are working properly.


From jchris.fillionr at kitware.com  Wed Jun  9 15:00:01 2010
From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin)
Date: Wed, 9 Jun 2010 11:00:01 -0400
Subject: [Ctk-developers] CTK Compile failure due a missing source file
In-Reply-To: <AANLkTingUTaYHeuTCAeFquloZMoaHULZXK2SnW0qkD7L@mail.gmail.com>
References: <AANLkTingUTaYHeuTCAeFquloZMoaHULZXK2SnW0qkD7L@mail.gmail.com>
Message-ID: <AANLkTilemEDvq89hpHyFYZmaySQiSEpO_EM9H7QYov-B@mail.gmail.com>

Hi Wagner,

Got you email.

Thanks for you report.

I will try that.

I will also update "my" continuous/nightly dashboard (dash21) to build this
module.
See http://my.cdash.org/index.php?project=CTK

Thks
Jc

On Wed, Jun 9, 2010 at 10:46 AM, Wagner Sales <wsales at gmail.com> wrote:

> Hi,
>
> I'm downloading and compiling CTK automatically 2 times per week.
> Well, by now CTK aren't compiling due the following error:
>
> CMake Error in Applications/ctkCLIPluginExplorer/CMakeLists.txt:
>  Cannot find source file "ctkCLIPluginExplorerMain.cxx".  Tried extensions
>  .c .C .c++ .cc .cpp .cxx .m .M .mm .h .hh .h++ .hm .hpp .hxx .in .txx
>
>
> -- Build files have been written to: /media/data/Builds/CTK/CTK-build
> make[2]: *** [CMakeExternals/Stamp/CTK-Configure/CTK-Configure-configure]
> Error 1
> make[1]: *** [CMakeFiles/CTK-Configure.dir/all] Error 2
> make: *** [all] Error 2
>
> Or the file are not added in repository or CMakeLists.txt are outdated.
>
> Regards,
>
> Wagner Sales
>
> PS: Since this is my first post, please someone, if possible, answer
> this mail just to test if the list are working properly.
> _______________________________________________
> Ctk-developers mailing list
> Ctk-developers at commontk.org
> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>



-- 
Phone: 1-518-836-2174
Ext: 304
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From jchris.fillionr at kitware.com  Wed Jun  9 17:10:31 2010
From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin)
Date: Wed, 9 Jun 2010 13:10:31 -0400
Subject: [Ctk-developers] CTK Compile failure due a missing source file
In-Reply-To: <AANLkTilemEDvq89hpHyFYZmaySQiSEpO_EM9H7QYov-B@mail.gmail.com>
References: <AANLkTingUTaYHeuTCAeFquloZMoaHULZXK2SnW0qkD7L@mail.gmail.com> 
	<AANLkTilemEDvq89hpHyFYZmaySQiSEpO_EM9H7QYov-B@mail.gmail.com>
Message-ID: <AANLkTilBpe91okWVubU9Qn_AdB5KbqV1DkRIzRt3RUJm@mail.gmail.com>

Hi Wagner,

I was ablt to reproduced the problem: see
http://my.cdash.org/viewBuildError.php?buildid=73392

I fixed the problem on CTK master. See:

http://github.com/pieper/CTK/commit/641736cb3c6e6bd6d71c667d67bbb80ab1413338

http://github.com/pieper/CTK/commit/d1726f9675cedd5d878cd2cf526a418128c856e9

http://my.cdash.org/index.php?project=CTK&subproject=ctkCLIPluginExplorer&date=2010-06-09

Thks
Jc

On Wed, Jun 9, 2010 at 11:00 AM, Jean-Christophe Fillion-Robin <
jchris.fillionr at kitware.com> wrote:

> Hi Wagner,
>
> Got you email.
>
> Thanks for you report.
>
> I will try that.
>
> I will also update "my" continuous/nightly dashboard (dash21) to build this
> module.
> See http://my.cdash.org/index.php?project=CTK
>
> Thks
> Jc
>
>
> On Wed, Jun 9, 2010 at 10:46 AM, Wagner Sales <wsales at gmail.com> wrote:
>
>> Hi,
>>
>> I'm downloading and compiling CTK automatically 2 times per week.
>> Well, by now CTK aren't compiling due the following error:
>>
>> CMake Error in Applications/ctkCLIPluginExplorer/CMakeLists.txt:
>>  Cannot find source file "ctkCLIPluginExplorerMain.cxx".  Tried extensions
>>  .c .C .c++ .cc .cpp .cxx .m .M .mm .h .hh .h++ .hm .hpp .hxx .in .txx
>>
>>
>> -- Build files have been written to: /media/data/Builds/CTK/CTK-build
>> make[2]: *** [CMakeExternals/Stamp/CTK-Configure/CTK-Configure-configure]
>> Error 1
>> make[1]: *** [CMakeFiles/CTK-Configure.dir/all] Error 2
>> make: *** [all] Error 2
>>
>> Or the file are not added in repository or CMakeLists.txt are outdated.
>>
>> Regards,
>>
>> Wagner Sales
>>
>> PS: Since this is my first post, please someone, if possible, answer
>> this mail just to test if the list are working properly.
>> _______________________________________________
>> Ctk-developers mailing list
>> Ctk-developers at commontk.org
>> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>>
>
>
>
> --
> Phone: 1-518-836-2174
> Ext: 304
>



-- 
Phone: 1-518-836-2174
Ext: 304
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From jchris.fillionr at kitware.com  Wed Jun  9 19:41:09 2010
From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin)
Date: Wed, 9 Jun 2010 15:41:09 -0400
Subject: [Ctk-developers] CTK Compile failure due a missing source file
In-Reply-To: <AANLkTimqaO88OIpIaRhXf99kDeIGOzgE2IhOsPlq0mKL@mail.gmail.com>
References: <AANLkTingUTaYHeuTCAeFquloZMoaHULZXK2SnW0qkD7L@mail.gmail.com> 
	<AANLkTilemEDvq89hpHyFYZmaySQiSEpO_EM9H7QYov-B@mail.gmail.com> 
	<AANLkTilBpe91okWVubU9Qn_AdB5KbqV1DkRIzRt3RUJm@mail.gmail.com> 
	<AANLkTimqaO88OIpIaRhXf99kDeIGOzgE2IhOsPlq0mKL@mail.gmail.com>
Message-ID: <AANLkTimQ6znK79OBZLK8C8NBLIhjO-sZ_qJYbBl-TI6V@mail.gmail.com>

Would be great if you could setup a nightly and/or continuous dashboard :)

You will find an example of script here:
http://github.com/pieper/CTK/blob/master/CMake/ctkDashboardScript.EXAMPLE.cmake

Any question let me know.

Thks
Jc



On Wed, Jun 9, 2010 at 3:35 PM, Wagner Sales <wsales at gmail.com> wrote:

> Thanks Jean,
>
> I'll continue to compile and test CTK. Every found problems will be
> reported here.
>
> Best Regards,
>
> Wagner Sales
>
> 2010/6/9 Jean-Christophe Fillion-Robin <jchris.fillionr at kitware.com>:
> > Hi Wagner,
> >
> > I was ablt to reproduced the problem: see
> > http://my.cdash.org/viewBuildError.php?buildid=73392
> >
> > I fixed the problem on CTK master. See:
> >
> >
> http://github.com/pieper/CTK/commit/641736cb3c6e6bd6d71c667d67bbb80ab1413338
> >
> >
> http://github.com/pieper/CTK/commit/d1726f9675cedd5d878cd2cf526a418128c856e9
> >
> >
> http://my.cdash.org/index.php?project=CTK&subproject=ctkCLIPluginExplorer&date=2010-06-09
> >
> > Thks
> > Jc
> >
> > On Wed, Jun 9, 2010 at 11:00 AM, Jean-Christophe Fillion-Robin
> > <jchris.fillionr at kitware.com> wrote:
> >>
> >> Hi Wagner,
> >>
> >> Got you email.
> >>
> >> Thanks for you report.
> >>
> >> I will try that.
> >>
> >> I will also update "my" continuous/nightly dashboard (dash21) to build
> >> this module.
> >> See http://my.cdash.org/index.php?project=CTK
> >>
> >> Thks
> >> Jc
> >>
> >> On Wed, Jun 9, 2010 at 10:46 AM, Wagner Sales <wsales at gmail.com> wrote:
> >>>
> >>> Hi,
> >>>
> >>> I'm downloading and compiling CTK automatically 2 times per week.
> >>> Well, by now CTK aren't compiling due the following error:
> >>>
> >>> CMake Error in Applications/ctkCLIPluginExplorer/CMakeLists.txt:
> >>>  Cannot find source file "ctkCLIPluginExplorerMain.cxx".  Tried
> >>> extensions
> >>>  .c .C .c++ .cc .cpp .cxx .m .M .mm .h .hh .h++ .hm .hpp .hxx .in .txx
> >>>
> >>>
> >>> -- Build files have been written to: /media/data/Builds/CTK/CTK-build
> >>> make[2]: ***
> [CMakeExternals/Stamp/CTK-Configure/CTK-Configure-configure]
> >>> Error 1
> >>> make[1]: *** [CMakeFiles/CTK-Configure.dir/all] Error 2
> >>> make: *** [all] Error 2
> >>>
> >>> Or the file are not added in repository or CMakeLists.txt are outdated.
> >>>
> >>> Regards,
> >>>
> >>> Wagner Sales
> >>>
> >>> PS: Since this is my first post, please someone, if possible, answer
> >>> this mail just to test if the list are working properly.
> >>> _______________________________________________
> >>> Ctk-developers mailing list
> >>> Ctk-developers at commontk.org
> >>> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
> >>
> >>
> >>
> >> --
> >> Phone: 1-518-836-2174
> >> Ext: 304
> >
> >
> >
> > --
> > Phone: 1-518-836-2174
> > Ext: 304
> >
>



-- 
Phone: 1-518-836-2174
Ext: 304
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From wsales at gmail.com  Wed Jun  9 19:35:04 2010
From: wsales at gmail.com (Wagner Sales)
Date: Wed, 9 Jun 2010 16:35:04 -0300
Subject: [Ctk-developers] CTK Compile failure due a missing source file
In-Reply-To: <AANLkTilBpe91okWVubU9Qn_AdB5KbqV1DkRIzRt3RUJm@mail.gmail.com>
References: <AANLkTingUTaYHeuTCAeFquloZMoaHULZXK2SnW0qkD7L@mail.gmail.com>
	<AANLkTilemEDvq89hpHyFYZmaySQiSEpO_EM9H7QYov-B@mail.gmail.com>
	<AANLkTilBpe91okWVubU9Qn_AdB5KbqV1DkRIzRt3RUJm@mail.gmail.com>
Message-ID: <AANLkTimqaO88OIpIaRhXf99kDeIGOzgE2IhOsPlq0mKL@mail.gmail.com>

Thanks Jean,

I'll continue to compile and test CTK. Every found problems will be
reported here.

Best Regards,

Wagner Sales

2010/6/9 Jean-Christophe Fillion-Robin <jchris.fillionr at kitware.com>:
> Hi Wagner,
>
> I was ablt to reproduced the problem: see
> http://my.cdash.org/viewBuildError.php?buildid=73392
>
> I fixed the problem on CTK master. See:
>
> http://github.com/pieper/CTK/commit/641736cb3c6e6bd6d71c667d67bbb80ab1413338
>
> http://github.com/pieper/CTK/commit/d1726f9675cedd5d878cd2cf526a418128c856e9
>
> http://my.cdash.org/index.php?project=CTK&subproject=ctkCLIPluginExplorer&date=2010-06-09
>
> Thks
> Jc
>
> On Wed, Jun 9, 2010 at 11:00 AM, Jean-Christophe Fillion-Robin
> <jchris.fillionr at kitware.com> wrote:
>>
>> Hi Wagner,
>>
>> Got you email.
>>
>> Thanks for you report.
>>
>> I will try that.
>>
>> I will also update "my" continuous/nightly dashboard (dash21) to build
>> this module.
>> See http://my.cdash.org/index.php?project=CTK
>>
>> Thks
>> Jc
>>
>> On Wed, Jun 9, 2010 at 10:46 AM, Wagner Sales <wsales at gmail.com> wrote:
>>>
>>> Hi,
>>>
>>> I'm downloading and compiling CTK automatically 2 times per week.
>>> Well, by now CTK aren't compiling due the following error:
>>>
>>> CMake Error in Applications/ctkCLIPluginExplorer/CMakeLists.txt:
>>> ?Cannot find source file "ctkCLIPluginExplorerMain.cxx". ?Tried
>>> extensions
>>> ?.c .C .c++ .cc .cpp .cxx .m .M .mm .h .hh .h++ .hm .hpp .hxx .in .txx
>>>
>>>
>>> -- Build files have been written to: /media/data/Builds/CTK/CTK-build
>>> make[2]: *** [CMakeExternals/Stamp/CTK-Configure/CTK-Configure-configure]
>>> Error 1
>>> make[1]: *** [CMakeFiles/CTK-Configure.dir/all] Error 2
>>> make: *** [all] Error 2
>>>
>>> Or the file are not added in repository or CMakeLists.txt are outdated.
>>>
>>> Regards,
>>>
>>> Wagner Sales
>>>
>>> PS: Since this is my first post, please someone, if possible, answer
>>> this mail just to test if the list are working properly.
>>> _______________________________________________
>>> Ctk-developers mailing list
>>> Ctk-developers at commontk.org
>>> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>>
>>
>>
>> --
>> Phone: 1-518-836-2174
>> Ext: 304
>
>
>
> --
> Phone: 1-518-836-2174
> Ext: 304
>


From wsales at gmail.com  Thu Jun 10 13:39:44 2010
From: wsales at gmail.com (Wagner Sales)
Date: Thu, 10 Jun 2010 10:39:44 -0300
Subject: [Ctk-developers] Error compiling CTK with message support ( ZMQ and
	CMake 2.8 )
Message-ID: <AANLkTil7T7iUKv-fRPNjEPtdepe94TQSq4x-9azOQ55D@mail.gmail.com>

Hi all,

I'm compiling CTK with messaging support, which ( i think ) needs ZMQ.
The following problem appears:

CMake Error at /usr/share/cmake-2.8/Modules/CMakeExportBuildSettings.cmake:17
(MESSAGE):
  The functionality of this module has been dropped as of CMake 2.8.  It was
  deemed harmful (confusing users by changing their compiler).  Please remove
  calls to the CMAKE_EXPORT_BUILD_SETTINGS macro and stop including this
  module.  If this project generates any files for use by external projects,
  remove any use of the CMakeImportBuildSettings module from them.
Call Stack (most recent call first):
  CMakeLists.txt:301 (INCLUDE)


Probably, CMakeLists.txt for ZMQ needs a CMAKE_MINIMUM_VERSION or
another cmake directive to avoid this.

Regards,

Wagner Sales


From jchris.fillionr at kitware.com  Thu Jun 10 14:59:01 2010
From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin)
Date: Thu, 10 Jun 2010 10:59:01 -0400
Subject: [Ctk-developers] Error compiling CTK with message support ( ZMQ
	and CMake 2.8 )
In-Reply-To: <AANLkTil7T7iUKv-fRPNjEPtdepe94TQSq4x-9azOQ55D@mail.gmail.com>
References: <AANLkTil7T7iUKv-fRPNjEPtdepe94TQSq4x-9azOQ55D@mail.gmail.com>
Message-ID: <AANLkTinpGA9VBdvvKUR_elFwXvhz8XfM3ud7w3IKAIqK@mail.gmail.com>

Hi Patrick,

Could you update the zeromp2 CMakeLists.txt ?

See http://github.com/PatrickCheng/zeromq2/blob/master/CMakeLists.txt

You should basically comment line 301 and 302.

Thks
Jc


On Thu, Jun 10, 2010 at 9:39 AM, Wagner Sales <wsales at gmail.com> wrote:

> Hi all,
>
> I'm compiling CTK with messaging support, which ( i think ) needs ZMQ.
> The following problem appears:
>
> CMake Error at
> /usr/share/cmake-2.8/Modules/CMakeExportBuildSettings.cmake:17
> (MESSAGE):
>  The functionality of this module has been dropped as of CMake 2.8.  It was
>  deemed harmful (confusing users by changing their compiler).  Please
> remove
>  calls to the CMAKE_EXPORT_BUILD_SETTINGS macro and stop including this
>  module.  If this project generates any files for use by external projects,
>  remove any use of the CMakeImportBuildSettings module from them.
> Call Stack (most recent call first):
>  CMakeLists.txt:301 (INCLUDE)
>
>
> Probably, CMakeLists.txt for ZMQ needs a CMAKE_MINIMUM_VERSION or
> another cmake directive to avoid this.
>
> Regards,
>
> Wagner Sales
> _______________________________________________
> Ctk-developers mailing list
> Ctk-developers at commontk.org
> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>



-- 
Phone: 1-518-836-2174
Ext: 304
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From cheng at isis.georgetown.edu  Thu Jun 10 15:30:30 2010
From: cheng at isis.georgetown.edu (Patrick Cheng)
Date: Thu, 10 Jun 2010 11:30:30 -0400
Subject: [Ctk-developers] Error compiling CTK with message support ( ZMQ
 and	CMake 2.8 )
In-Reply-To: <AANLkTil7T7iUKv-fRPNjEPtdepe94TQSq4x-9azOQ55D@mail.gmail.com>
References: <AANLkTil7T7iUKv-fRPNjEPtdepe94TQSq4x-9azOQ55D@mail.gmail.com>
Message-ID: <4C110516.5050005@isis.georgetown.edu>

Hi Wagner,

You are right.

This is a problem with CMake (2.8). It works with 2.8.1 though.

I will remove comment out "CMAKE_EXPORT_BUILD_SETTINGS" command for 
right now.

Patrick

On 6/10/2010 9:39 AM, Wagner Sales wrote:
> Hi all,
>
> I'm compiling CTK with messaging support, which ( i think ) needs ZMQ.
> The following problem appears:
>
> CMake Error at /usr/share/cmake-2.8/Modules/CMakeExportBuildSettings.cmake:17
> (MESSAGE):
>    The functionality of this module has been dropped as of CMake 2.8.  It was
>    deemed harmful (confusing users by changing their compiler).  Please remove
>    calls to the CMAKE_EXPORT_BUILD_SETTINGS macro and stop including this
>    module.  If this project generates any files for use by external projects,
>    remove any use of the CMakeImportBuildSettings module from them.
> Call Stack (most recent call first):
>    CMakeLists.txt:301 (INCLUDE)
>
>
> Probably, CMakeLists.txt for ZMQ needs a CMAKE_MINIMUM_VERSION or
> another cmake directive to avoid this.
>
> Regards,
>
> Wagner Sales
> _______________________________________________
> Ctk-developers mailing list
> Ctk-developers at commontk.org
> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>
>


From jchris.fillionr at kitware.com  Mon Jun 14 10:24:57 2010
From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin)
Date: Mon, 14 Jun 2010 06:24:57 -0400
Subject: [Ctk-developers] IMPORTANT - New repository hosted on
	http://github.com/commontk
Message-ID: <AANLkTilz5ymVWQPyQzYcuqu7V_h_LlK50OrxipJdrWgx@mail.gmail.com>

Hi Folks,

Following our recent discussion ... see
http://github.com/pieper/CTK/issues#issue/19

The "master/original/official" repository is still hosted on github but the
associated user is "commontk" and not anymore "pieper" !

The history have been cleaned !  See stats below:

pieper/CTK         total size:  *40M*  objects count: 7788    time to clone:
~22s
commontk/CTK   total size: * **6.2M*  objects count: 5811    time to clone:
~8s
(total size obtained using: (du -ksh .)


DCMTK, Log4Qt, log4cpp, ZMQ have been removed from it and are now hosted in
their own repository.
See :
  http://github.com/commontk/PythonQt
  http://github.com/commontk/Log4Qt
  http://github.com/commontk/DCMTK

*Please pay attention to the following*  *- Since the history has been
rewritten, consider the following:*

Any repository  cloned using *git at github.com:pieper/CTK.git *should be
considered as *UNUSABLE*.
   -> Delete it and re-clone it from *git at github.com:commontk/CTK.git*

Please, re-fork also your repository. See instruction at the end.

Note also that all users should have been already added as collaborator to
the github.com/commontk
The existing github.com/pieper is obsolete and will be deleted soon. (Steve:
Can you remove the accesses ?)




In case you have *COMMITS* which are *NOT YET PUSHED* to the main
repository.

For example:

          A---B---C my_work_in_progress
         /
    D---E---F---G master


1) Make sure you apply you backup the stash

git stash apply && git commit -a -m "WIP"


2)  Let's find out the SHA1 of:
   - your last local commit
   - the parent of your first local commit

git log --graph --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s
%Cgreen(%cr) %C(bold blue)<%an>%Creset' --abbrev-commit --date=relative

Example:

* *ad9957a* - (HEAD, master) ENH: wip (7 minutes ago) <Jean-Christophe
Fillion-Robin>
* ac4abdb - ENH: Added feature2 (23 minutes ago) <Jean-Christophe
Fillion-Robin>
* 2499a9e - ENH: Added feature1 (23 minutes ago) <Jean-Christophe
Fillion-Robin>
* *ccdb850* - (origin/master) COMP: Superbuild - ExternalProject - git
update step should also perform a "git pull" (9 hours ago) <Jean-Christophe
Filli
* 8f567e7 - ...


3) Create a patch with all your local commits

git format-patch -k --stdout *ccdb850*..*ad9957a* >
~/work_in_progress_ctk.patch


4) Delete this CTK folder and clone the new repository

cd ..

git clone git at github.com:commontk/CTK.git && cd CTK

cat ~/work_in_progress_ctk.patch | git am -3 -k


Here it is - You should now be able to work as usual ...





*PLEASE Re-Fork* !

1)

  Go on http://github.com/YourName/CTK

  .... and delete your CTK fork.

  See "Deleting the forked repository" on http://help.github.com/forking/

2)

   Go on http://github.com/commontk/CTK

   .. and fork the repository

   Then, if you go on http://github.com/YourName/CTK
   it should indicates:

  YourName/CTK
     |
     ---> forked from commontk/CTK



Any question, let me know.

Thks
Jc

-- 
Phone: 1-518-836-2174
Ext: 304
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From s.zelzer at dkfz-heidelberg.de  Mon Jun 14 12:07:23 2010
From: s.zelzer at dkfz-heidelberg.de (Sascha Zelzer)
Date: Mon, 14 Jun 2010 14:07:23 +0200
Subject: [Ctk-developers] IMPORTANT - New repository hosted
	on	http://github.com/commontk
In-Reply-To: <AANLkTilz5ymVWQPyQzYcuqu7V_h_LlK50OrxipJdrWgx@mail.gmail.com>
References: <AANLkTilz5ymVWQPyQzYcuqu7V_h_LlK50OrxipJdrWgx@mail.gmail.com>
Message-ID: <4C161B7B.5040501@dkfz-heidelberg.de>

JC, thanks for doing the hard work! I followed your instructions and the 
transition was easy and smooth.

- Sascha


From pieper at bwh.harvard.edu  Mon Jun 14 14:49:51 2010
From: pieper at bwh.harvard.edu (Steve Pieper)
Date: Mon, 14 Jun 2010 10:49:51 -0400
Subject: [Ctk-developers] IMPORTANT - New repository hosted
	on	http://github.com/commontk
In-Reply-To: <AANLkTilz5ymVWQPyQzYcuqu7V_h_LlK50OrxipJdrWgx@mail.gmail.com>
References: <AANLkTilz5ymVWQPyQzYcuqu7V_h_LlK50OrxipJdrWgx@mail.gmail.com>
Message-ID: <4C16418F.5010508@bwh.harvard.edu>

Excellent info Jc - thanks for getting this organized so quickly!

I deprecated the old repo (changed the README and removed the 
collaborators) so hopefully there will be minimal confusion.

-Steve

On Jun/14/10 6:24 AM, Jean-Christophe Fillion-Robin wrote:
> Hi Folks,
>
> Following our recent discussion ... see
> http://github.com/pieper/CTK/issues#issue/19
>
> The "master/original/official" repository is still hosted on github but
> the associated user is "commontk" and not anymore "pieper" !
>
> The history have been cleaned !  See stats below:
>
> pieper/CTK         total size: *40M*  objects count: 7788    time to
> clone: ~22s
> commontk/CTK   total size: * **6.2M*  objects count: 5811    time to
> clone: ~8s
> (total size obtained using: (du -ksh .)
>
>
> DCMTK, Log4Qt, log4cpp, ZMQ have been removed from it and are now hosted
> in their own repository.
> See :
> http://github.com/commontk/PythonQt
> http://github.com/commontk/Log4Qt
> http://github.com/commontk/DCMTK
>
> *Please pay attention to the following* *- Since the history has been
> rewritten, consider the following:*
>
> Any repository  cloned using *git at github.com:pieper/CTK.git *should be
> considered as *UNUSABLE*.
>     -> Delete it and re-clone it from *git at github.com:commontk/CTK.git*
>
> Please, re-fork also your repository. See instruction at the end.
>
> Note also that all users should have been already added as collaborator
> to the github.com/commontk <http://github.com/commontk>
> The existing github.com/pieper <http://github.com/pieper> is obsolete
> and will be deleted soon. (Steve: Can you remove the accesses ?)
>
>
>
>
> In case you have *COMMITS* which are *NOT YET PUSHED* to the main
> repository.
>
> For example:
>
>            A---B---C my_work_in_progress
>           /
>      D---E---F---G master
>
>
> 1) Make sure you apply you backup the stash
>
> git stash apply && git commit -a -m "WIP"
>
>
> 2)  Let's find out the SHA1 of:
>     - your last local commit
>     - the parent of your first local commit
>
> git log --graph --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s
> %Cgreen(%cr) %C(bold blue)<%an>%Creset' --abbrev-commit --date=relative
>
> Example:
>
> * *ad9957a* - (HEAD, master) ENH: wip (7 minutes ago) <Jean-Christophe
> Fillion-Robin>
> * ac4abdb - ENH: Added feature2 (23 minutes ago) <Jean-Christophe
> Fillion-Robin>
> * 2499a9e - ENH: Added feature1 (23 minutes ago) <Jean-Christophe
> Fillion-Robin>
> * *ccdb850* - (origin/master) COMP: Superbuild - ExternalProject - git
> update step should also perform a "git pull" (9 hours ago)
> <Jean-Christophe Filli
> * 8f567e7 - ...
>
>
> 3) Create a patch with all your local commits
>
> git format-patch -k --stdout *ccdb850*..*ad9957a* >
> ~/work_in_progress_ctk.patch
>
>
> 4) Delete this CTK folder and clone the new repository
>
> cd ..
>
> git clone git at github.com:commontk/CTK.git && cd CTK
>
> cat ~/work_in_progress_ctk.patch | git am -3 -k
>
>
> Here it is - You should now be able to work as usual ...
>
>
>
>
>
> *PLEASE Re-Fork* !
>
> 1)
>
>    Go on http://github.com/YourName/CTK
>
>    .... and delete your CTK fork.
>
>    See "Deleting the forked repository" on http://help.github.com/forking/
>
> 2)
>
>     Go on http://github.com/commontk/CTK
>
>     .. and fork the repository
>
>     Then, if you go on http://github.com/YourName/CTK
>     it should indicates:
>
>    YourName/CTK
>       |
>       ---> forked from commontk/CTK
>
>
>
> Any question, let me know.
>
> Thks
> Jc
>
> --
> Phone: 1-518-836-2174
> Ext: 304
>
>
>
> _______________________________________________
> Ctk-developers mailing list
> Ctk-developers at commontk.org
> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers


From cheng at isis.georgetown.edu  Mon Jun 14 18:59:18 2010
From: cheng at isis.georgetown.edu (Patrick Cheng)
Date: Mon, 14 Jun 2010 11:59:18 -0700
Subject: [Ctk-developers] [GitHub] Inform the user that the UUID package
 must be installed [commontk/CTK GH-3]
In-Reply-To: <4c1619466d45_29933ff1388d18787f5@fe4.rs.github.com.tmail>
References: <4c1619466d45_29933ff1388d18787f5@fe4.rs.github.com.tmail>
Message-ID: <4C167C06.5030305@isis.georgetown.edu>

I checked in a fix for this.

CHECK_INCLUDE_FILES(uuid.h HAVE_UUID_H)
     IF(NOT HAS_UUID_H)
       MESSAGE( FATAL_ERROR "This package requires uuid-dev.")
     ENDIF()


On 6/14/2010 4:57 AM, GitHub wrote:
> commontk reported an issue:
>
>
>
> When compiling, I got the following errors:
>
> In file included from /home/julien/work/git/CTK/Utilities/ZMQ/uuid.cpp:21:
> /home/julien/work/git/CTK/Utilities/ZMQ/uuid.hpp:67: error: ?uuid_t? in namespace ?::? does not name a type /home/julien/work/git/CTK/Utilities/ZMQ/uuid.cpp: In constructor ?zmq::uuid_t::uuid_t()?: /home/julien/work/git/CTK/Utilities/ZMQ/uuid.cpp:80: error: ?uuid? was not declared in this scope /home/julien/work/git/CTK/Utilities/ZMQ/uuid.cpp:80: error: ?uuid_generate? was not declared in this scope /home/julien/work/git/CTK/Utilities/ZMQ/uuid.cpp:81: error: ?uuid_unparse? was not declared in this scope
>
> The uuid-devel package was missing, it needed to be installed. How about checking if the uuid.h file exists at configuration time instead of compile time ?
>
>
> View Issue: http://github.com/commontk/CTK/issues#issue/3
>
>


From jchris.fillionr at kitware.com  Mon Jun 14 16:02:58 2010
From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin)
Date: Mon, 14 Jun 2010 12:02:58 -0400
Subject: [Ctk-developers] IMPORTANT - New repository hosted on
	http://github.com/commontk
In-Reply-To: <AANLkTikvoP7uRFiU_Om4ZUDIEzCTod1M5MCIgsJKEcc2@mail.gmail.com>
References: <AANLkTilz5ymVWQPyQzYcuqu7V_h_LlK50OrxipJdrWgx@mail.gmail.com> 
	<4C16418F.5010508@bwh.harvard.edu>
	<AANLkTikvoP7uRFiU_Om4ZUDIEzCTod1M5MCIgsJKEcc2@mail.gmail.com>
Message-ID: <AANLkTiliVJjvHRPsIUkhFtfQWAwURs-NXIozfmPlD5xV@mail.gmail.com>

Hi Folks,

We are good for real !

I re-exported the repository to github.com/commontk/CTK.

The author name and email are now consistent. ohloh.net should reflects
these changes soon.

Please, make sure that your *set properly your name and your email* from
each machine you are willing to push changes.  See below:

git config --global user.name "john Doo"

git config --global user.email john.doo at wonderland.org

Make also sure you enter your "Firstname Lastname" into your github
settings otherwise,
it makes harder to know who is watching a repo, who forked it, who committed ..

This applies to: dblezek, elpablo, jjomier, oliverkutter, pomedas,
aylward, sordas


*DO NOT FORGET to Re-FORK and Re-APPLY your commits*. See my first email..

Soon I will also send an email explaining how to setup some pre-commit hooks
...
 ... to, for example, check if your commit message is valid

Thanks
Jc

On Mon, Jun 14, 2010 at 11:00 AM, Jean-Christophe Fillion-Robin <
jchris.fillionr at kitware.com> wrote:

> No problem - sounds good
>
> In the mean time, after I updated ohloh.net/p/commontk, I noticed that the
> author name / email weren't
> consistent. Some were in double.
>
> I am almost done running my scripts.
>
> Then I will
>    - re-push a clean version of CTK repo in the next hour.
>    - then, everybody would be able to re-fork and re-import his commit.
>
> I promise it the last time !
>
> I keep you posted.
>
> Thks
> Jc
>
>
>
>
> On Mon, Jun 14, 2010 at 10:49 AM, Steve Pieper <pieper at bwh.harvard.edu>wrote:
>
>> Excellent info Jc - thanks for getting this organized so quickly!
>>
>> I deprecated the old repo (changed the README and removed the
>> collaborators) so hopefully there will be minimal confusion.
>>
>> -Steve
>>
>>
>> On Jun/14/10 6:24 AM, Jean-Christophe Fillion-Robin wrote:
>>
>>> Hi Folks,
>>>
>>> Following our recent discussion ... see
>>> http://github.com/pieper/CTK/issues#issue/19
>>>
>>> The "master/original/official" repository is still hosted on github but
>>> the associated user is "commontk" and not anymore "pieper" !
>>>
>>> The history have been cleaned !  See stats below:
>>>
>>> pieper/CTK         total size: *40M*  objects count: 7788    time to
>>> clone: ~22s
>>> commontk/CTK   total size: * **6.2M*  objects count: 5811    time to
>>> clone: ~8s
>>> (total size obtained using: (du -ksh .)
>>>
>>>
>>> DCMTK, Log4Qt, log4cpp, ZMQ have been removed from it and are now hosted
>>> in their own repository.
>>> See :
>>> http://github.com/commontk/PythonQt
>>> http://github.com/commontk/Log4Qt
>>> http://github.com/commontk/DCMTK
>>>
>>> *Please pay attention to the following* *- Since the history has been
>>> rewritten, consider the following:*
>>>
>>> Any repository  cloned using *git at github.com:pieper/CTK.git *should be
>>> considered as *UNUSABLE*.
>>>    -> Delete it and re-clone it from *git at github.com:commontk/CTK.git*
>>>
>>> Please, re-fork also your repository. See instruction at the end.
>>>
>>> Note also that all users should have been already added as collaborator
>>> to the github.com/commontk <http://github.com/commontk>
>>> The existing github.com/pieper <http://github.com/pieper> is obsolete
>>>
>>> and will be deleted soon. (Steve: Can you remove the accesses ?)
>>>
>>>
>>>
>>>
>>> In case you have *COMMITS* which are *NOT YET PUSHED* to the main
>>> repository.
>>>
>>> For example:
>>>
>>>           A---B---C my_work_in_progress
>>>          /
>>>     D---E---F---G master
>>>
>>>
>>> 1) Make sure you apply you backup the stash
>>>
>>> git stash apply && git commit -a -m "WIP"
>>>
>>>
>>> 2)  Let's find out the SHA1 of:
>>>    - your last local commit
>>>    - the parent of your first local commit
>>>
>>> git log --graph --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s
>>> %Cgreen(%cr) %C(bold blue)<%an>%Creset' --abbrev-commit --date=relative
>>>
>>> Example:
>>>
>>> * *ad9957a* - (HEAD, master) ENH: wip (7 minutes ago) <Jean-Christophe
>>> Fillion-Robin>
>>> * ac4abdb - ENH: Added feature2 (23 minutes ago) <Jean-Christophe
>>> Fillion-Robin>
>>> * 2499a9e - ENH: Added feature1 (23 minutes ago) <Jean-Christophe
>>> Fillion-Robin>
>>> * *ccdb850* - (origin/master) COMP: Superbuild - ExternalProject - git
>>> update step should also perform a "git pull" (9 hours ago)
>>> <Jean-Christophe Filli
>>> * 8f567e7 - ...
>>>
>>>
>>> 3) Create a patch with all your local commits
>>>
>>> git format-patch -k --stdout *ccdb850*..*ad9957a* >
>>> ~/work_in_progress_ctk.patch
>>>
>>>
>>> 4) Delete this CTK folder and clone the new repository
>>>
>>> cd ..
>>>
>>> git clone git at github.com:commontk/CTK.git && cd CTK
>>>
>>> cat ~/work_in_progress_ctk.patch | git am -3 -k
>>>
>>>
>>> Here it is - You should now be able to work as usual ...
>>>
>>>
>>>
>>>
>>>
>>> *PLEASE Re-Fork* !
>>>
>>> 1)
>>>
>>>   Go on http://github.com/YourName/CTK
>>>
>>>   .... and delete your CTK fork.
>>>
>>>   See "Deleting the forked repository" on
>>> http://help.github.com/forking/
>>>
>>> 2)
>>>
>>>    Go on http://github.com/commontk/CTK
>>>
>>>    .. and fork the repository
>>>
>>>    Then, if you go on http://github.com/YourName/CTK
>>>    it should indicates:
>>>
>>>   YourName/CTK
>>>      |
>>>      ---> forked from commontk/CTK
>>>
>>>
>>>
>>> Any question, let me know.
>>>
>>> Thks
>>> Jc
>>>
>>> --
>>> Phone: 1-518-836-2174
>>> Ext: 304
>>>
>>>
>>>
>>> _______________________________________________
>>> Ctk-developers mailing list
>>> Ctk-developers at commontk.org
>>> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>>>
>>
>
>
> --
> Phone: 1-518-836-2174
> Ext: 304
>



-- 
Phone: 1-518-836-2174
Ext: 304
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From jchris.fillionr at kitware.com  Mon Jun 14 15:00:30 2010
From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin)
Date: Mon, 14 Jun 2010 11:00:30 -0400
Subject: [Ctk-developers] IMPORTANT - New repository hosted on
	http://github.com/commontk
In-Reply-To: <4C16418F.5010508@bwh.harvard.edu>
References: <AANLkTilz5ymVWQPyQzYcuqu7V_h_LlK50OrxipJdrWgx@mail.gmail.com> 
	<4C16418F.5010508@bwh.harvard.edu>
Message-ID: <AANLkTikvoP7uRFiU_Om4ZUDIEzCTod1M5MCIgsJKEcc2@mail.gmail.com>

No problem - sounds good

In the mean time, after I updated ohloh.net/p/commontk, I noticed that the
author name / email weren't
consistent. Some were in double.

I am almost done running my scripts.

Then I will
   - re-push a clean version of CTK repo in the next hour.
   - then, everybody would be able to re-fork and re-import his commit.

I promise it the last time !

I keep you posted.

Thks
Jc



On Mon, Jun 14, 2010 at 10:49 AM, Steve Pieper <pieper at bwh.harvard.edu>wrote:

> Excellent info Jc - thanks for getting this organized so quickly!
>
> I deprecated the old repo (changed the README and removed the
> collaborators) so hopefully there will be minimal confusion.
>
> -Steve
>
>
> On Jun/14/10 6:24 AM, Jean-Christophe Fillion-Robin wrote:
>
>> Hi Folks,
>>
>> Following our recent discussion ... see
>> http://github.com/pieper/CTK/issues#issue/19
>>
>> The "master/original/official" repository is still hosted on github but
>> the associated user is "commontk" and not anymore "pieper" !
>>
>> The history have been cleaned !  See stats below:
>>
>> pieper/CTK         total size: *40M*  objects count: 7788    time to
>> clone: ~22s
>> commontk/CTK   total size: * **6.2M*  objects count: 5811    time to
>> clone: ~8s
>> (total size obtained using: (du -ksh .)
>>
>>
>> DCMTK, Log4Qt, log4cpp, ZMQ have been removed from it and are now hosted
>> in their own repository.
>> See :
>> http://github.com/commontk/PythonQt
>> http://github.com/commontk/Log4Qt
>> http://github.com/commontk/DCMTK
>>
>> *Please pay attention to the following* *- Since the history has been
>> rewritten, consider the following:*
>>
>> Any repository  cloned using *git at github.com:pieper/CTK.git *should be
>> considered as *UNUSABLE*.
>>    -> Delete it and re-clone it from *git at github.com:commontk/CTK.git*
>>
>> Please, re-fork also your repository. See instruction at the end.
>>
>> Note also that all users should have been already added as collaborator
>> to the github.com/commontk <http://github.com/commontk>
>> The existing github.com/pieper <http://github.com/pieper> is obsolete
>>
>> and will be deleted soon. (Steve: Can you remove the accesses ?)
>>
>>
>>
>>
>> In case you have *COMMITS* which are *NOT YET PUSHED* to the main
>> repository.
>>
>> For example:
>>
>>           A---B---C my_work_in_progress
>>          /
>>     D---E---F---G master
>>
>>
>> 1) Make sure you apply you backup the stash
>>
>> git stash apply && git commit -a -m "WIP"
>>
>>
>> 2)  Let's find out the SHA1 of:
>>    - your last local commit
>>    - the parent of your first local commit
>>
>> git log --graph --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s
>> %Cgreen(%cr) %C(bold blue)<%an>%Creset' --abbrev-commit --date=relative
>>
>> Example:
>>
>> * *ad9957a* - (HEAD, master) ENH: wip (7 minutes ago) <Jean-Christophe
>> Fillion-Robin>
>> * ac4abdb - ENH: Added feature2 (23 minutes ago) <Jean-Christophe
>> Fillion-Robin>
>> * 2499a9e - ENH: Added feature1 (23 minutes ago) <Jean-Christophe
>> Fillion-Robin>
>> * *ccdb850* - (origin/master) COMP: Superbuild - ExternalProject - git
>> update step should also perform a "git pull" (9 hours ago)
>> <Jean-Christophe Filli
>> * 8f567e7 - ...
>>
>>
>> 3) Create a patch with all your local commits
>>
>> git format-patch -k --stdout *ccdb850*..*ad9957a* >
>> ~/work_in_progress_ctk.patch
>>
>>
>> 4) Delete this CTK folder and clone the new repository
>>
>> cd ..
>>
>> git clone git at github.com:commontk/CTK.git && cd CTK
>>
>> cat ~/work_in_progress_ctk.patch | git am -3 -k
>>
>>
>> Here it is - You should now be able to work as usual ...
>>
>>
>>
>>
>>
>> *PLEASE Re-Fork* !
>>
>> 1)
>>
>>   Go on http://github.com/YourName/CTK
>>
>>   .... and delete your CTK fork.
>>
>>   See "Deleting the forked repository" on http://help.github.com/forking/
>>
>> 2)
>>
>>    Go on http://github.com/commontk/CTK
>>
>>    .. and fork the repository
>>
>>    Then, if you go on http://github.com/YourName/CTK
>>    it should indicates:
>>
>>   YourName/CTK
>>      |
>>      ---> forked from commontk/CTK
>>
>>
>>
>> Any question, let me know.
>>
>> Thks
>> Jc
>>
>> --
>> Phone: 1-518-836-2174
>> Ext: 304
>>
>>
>>
>> _______________________________________________
>> Ctk-developers mailing list
>> Ctk-developers at commontk.org
>> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>>
>


-- 
Phone: 1-518-836-2174
Ext: 304
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From stephen.aylward at kitware.com  Tue Jun 15 16:39:50 2010
From: stephen.aylward at kitware.com (Stephen Aylward)
Date: Tue, 15 Jun 2010 12:39:50 -0400
Subject: [Ctk-developers] [GitHub] Wiki-estion ?? [commontk/CTK GH-6]
In-Reply-To: <4c17a76a9f7b4_59053ffa85d1607c2119@fe1.rs.github.com.tmail>
References: <4c17a76a9f7b4_59053ffa85d1607c2119@fe1.rs.github.com.tmail>
Message-ID: <AANLkTil-5vB258td8Y36nVsb0RmHAhuq6MJUFDnXyy8l@mail.gmail.com>

We should us the existing wiki at commontk.org - we have much more
control over it.

We should also use the commontk developers email list, and not github
- because I cannot reply to a github posting via email.

s

On Tue, Jun 15, 2010 at 12:16 PM, GitHub <noreply at github.com> wrote:
> commontk reported an issue:
>
> Hi Folks,
>
> 1) Github provide a wiki - Should we use it ?
>
> 2) Should we add a pointer to this one: http://www.commontk.org/index.php/Main_Page ??
>
> 3) Who want to be organize the doc / bug people with some "stuff" need to be updated .. ?
>
> Jc
>
>
>
> View Issue: http://github.com/commontk/CTK/issues#issue/6
>



-- 

==============================
Stephen R. Aylward, Ph.D.
Director of Medical Imaging Research
Kitware, Inc. - North Carolina Office
http://www.kitware.com
stephen.aylward (Skype)
(919) 969-6990 x300


From pieper at bwh.harvard.edu  Tue Jun 15 17:06:18 2010
From: pieper at bwh.harvard.edu (Steve Pieper)
Date: Tue, 15 Jun 2010 13:06:18 -0400
Subject: [Ctk-developers] [GitHub] Wiki-estion ?? [commontk/CTK GH-6]
In-Reply-To: <AANLkTil-5vB258td8Y36nVsb0RmHAhuq6MJUFDnXyy8l@mail.gmail.com>
References: <4c17a76a9f7b4_59053ffa85d1607c2119@fe1.rs.github.com.tmail>
	<AANLkTil-5vB258td8Y36nVsb0RmHAhuq6MJUFDnXyy8l@mail.gmail.com>
Message-ID: <4C17B30A.2040105@bwh.harvard.edu>

I agree - let's use commontk.org as the main wiki.  I added a link at 
the top of the github wiki pointing over to commontk.org.

It would be nice if github offered a real bug tracker (the 'issues' 
aren't very good for this).  Any other suggestions for a ctk bug tracker?

-Steve

On Jun/15/10 12:39 PM, Stephen Aylward wrote:
> We should us the existing wiki at commontk.org - we have much more
> control over it.
>
> We should also use the commontk developers email list, and not github
> - because I cannot reply to a github posting via email.
>
> s
>
> On Tue, Jun 15, 2010 at 12:16 PM, GitHub<noreply at github.com>  wrote:
>> commontk reported an issue:
>>
>> Hi Folks,
>>
>> 1) Github provide a wiki - Should we use it ?
>>
>> 2) Should we add a pointer to this one: http://www.commontk.org/index.php/Main_Page  ?
>>
>> 3) Who want to be organize the doc / bug people with some "stuff" need to be updated .. ?
>>
>> Jc
>>
>>
>>
>> View Issue: http://github.com/commontk/CTK/issues#issue/6
>>
>
>
>


From stephen.aylward at kitware.com  Tue Jun 15 17:44:36 2010
From: stephen.aylward at kitware.com (Stephen Aylward)
Date: Tue, 15 Jun 2010 13:44:36 -0400
Subject: [Ctk-developers] [GitHub] Wiki-estion ?? [commontk/CTK GH-6]
In-Reply-To: <4C17B30A.2040105@bwh.harvard.edu>
References: <4c17a76a9f7b4_59053ffa85d1607c2119@fe1.rs.github.com.tmail> 
	<AANLkTil-5vB258td8Y36nVsb0RmHAhuq6MJUFDnXyy8l@mail.gmail.com> 
	<4C17B30A.2040105@bwh.harvard.edu>
Message-ID: <AANLkTinSNdwoSGbEfOZcLJiNWu3uapityubcL-Sxgi_6@mail.gmail.com>

We could setup a mantis on commontk.org

s

On Tue, Jun 15, 2010 at 1:06 PM, Steve Pieper <pieper at bwh.harvard.edu> wrote:
> I agree - let's use commontk.org as the main wiki. ?I added a link at the
> top of the github wiki pointing over to commontk.org.
>
> It would be nice if github offered a real bug tracker (the 'issues' aren't
> very good for this). ?Any other suggestions for a ctk bug tracker?
>
> -Steve
>
> On Jun/15/10 12:39 PM, Stephen Aylward wrote:
>>
>> We should us the existing wiki at commontk.org - we have much more
>> control over it.
>>
>> We should also use the commontk developers email list, and not github
>> - because I cannot reply to a github posting via email.
>>
>> s
>>
>> On Tue, Jun 15, 2010 at 12:16 PM, GitHub<noreply at github.com> ?wrote:
>>>
>>> commontk reported an issue:
>>>
>>> Hi Folks,
>>>
>>> 1) Github provide a wiki - Should we use it ?
>>>
>>> 2) Should we add a pointer to this one:
>>> http://www.commontk.org/index.php/Main_Page ??
>>>
>>> 3) Who want to be organize the doc / bug people with some "stuff" need to
>>> be updated .. ?
>>>
>>> Jc
>>>
>>>
>>>
>>> View Issue: http://github.com/commontk/CTK/issues#issue/6
>>>
>>
>>
>>
>



-- 

==============================
Stephen R. Aylward, Ph.D.
Director of Medical Imaging Research
Kitware, Inc. - North Carolina Office
http://www.kitware.com
stephen.aylward (Skype)
(919) 969-6990 x300


From pieper at bwh.harvard.edu  Tue Jun 15 17:56:53 2010
From: pieper at bwh.harvard.edu (Steve Pieper)
Date: Tue, 15 Jun 2010 13:56:53 -0400
Subject: [Ctk-developers] [GitHub] Wiki-estion ?? [commontk/CTK GH-6]
In-Reply-To: <AANLkTinSNdwoSGbEfOZcLJiNWu3uapityubcL-Sxgi_6@mail.gmail.com>
References: <4c17a76a9f7b4_59053ffa85d1607c2119@fe1.rs.github.com.tmail>
	<AANLkTil-5vB258td8Y36nVsb0RmHAhuq6MJUFDnXyy8l@mail.gmail.com>
	<4C17B30A.2040105@bwh.harvard.edu>
	<AANLkTinSNdwoSGbEfOZcLJiNWu3uapityubcL-Sxgi_6@mail.gmail.com>
Message-ID: <4C17BEE5.9020608@bwh.harvard.edu>

That would be excellent - thanks!

On Jun/15/10 1:44 PM, Stephen Aylward wrote:
> We could setup a mantis on commontk.org
>
> s
>
> On Tue, Jun 15, 2010 at 1:06 PM, Steve Pieper<pieper at bwh.harvard.edu>  wrote:
>> I agree - let's use commontk.org as the main wiki.  I added a link at the
>> top of the github wiki pointing over to commontk.org.
>>
>> It would be nice if github offered a real bug tracker (the 'issues' aren't
>> very good for this).  Any other suggestions for a ctk bug tracker?
>>
>> -Steve
>>
>> On Jun/15/10 12:39 PM, Stephen Aylward wrote:
>>>
>>> We should us the existing wiki at commontk.org - we have much more
>>> control over it.
>>>
>>> We should also use the commontk developers email list, and not github
>>> - because I cannot reply to a github posting via email.
>>>
>>> s
>>>
>>> On Tue, Jun 15, 2010 at 12:16 PM, GitHub<noreply at github.com>    wrote:
>>>>
>>>> commontk reported an issue:
>>>>
>>>> Hi Folks,
>>>>
>>>> 1) Github provide a wiki - Should we use it ?
>>>>
>>>> 2) Should we add a pointer to this one:
>>>> http://www.commontk.org/index.php/Main_Page  ?
>>>>
>>>> 3) Who want to be organize the doc / bug people with some "stuff" need to
>>>> be updated .. ?
>>>>
>>>> Jc
>>>>
>>>>
>>>>
>>>> View Issue: http://github.com/commontk/CTK/issues#issue/6
>>>>
>>>
>>>
>>>
>>
>
>
>


From jchris.fillionr at kitware.com  Tue Jun 15 17:58:54 2010
From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin)
Date: Tue, 15 Jun 2010 13:58:54 -0400
Subject: [Ctk-developers] [GitHub] Wiki-estion ?? [commontk/CTK GH-6]
In-Reply-To: <4C17B30A.2040105@bwh.harvard.edu>
References: <4c17a76a9f7b4_59053ffa85d1607c2119@fe1.rs.github.com.tmail> 
	<AANLkTil-5vB258td8Y36nVsb0RmHAhuq6MJUFDnXyy8l@mail.gmail.com> 
	<4C17B30A.2040105@bwh.harvard.edu>
Message-ID: <AANLkTinwwR3XXpqOz9QzJKOsODV3PSD2lGuAkIEuhDMC@mail.gmail.com>

Github provide a way to setup "post receive hooks".

See http://help.github.com/post-receive-hooks/

That way a bug tracker could be aware of any commit and update the status of
issue.

Github provide also an API (see http://develop.github.com/) very very issue
to use.  For example, using the program curl, you can easily create new
issue, update them etc ... .

The real question is "which workflow do we want to use / enforce" ?

I think each developer could:
  - fork the main repository
  - eventually publish the branch he is working for backup purposes /
sharing purposes
  - when feature are ready, merge back to commontk/CTK/master

That way its clear to see where things come from. For example, have a look
at: http://github.com/commontk/CTK/network

We can see the branch I published and I am currently working on:
ctkSimplePythonShell and superbuild_features

Note also that I have branch I am keeping local to my workstation ...


We are used to work with mantis, do we want to integrate both ?

Some hints available:
  http://leetcode.net/blog/2009/01/integrating-git-svn-with-mantisbt/

  http://github.com/jreese
  http://github.com/jreese/supybot-mantis

Thks
Jc


On Tue, Jun 15, 2010 at 1:06 PM, Steve Pieper <pieper at bwh.harvard.edu>wrote:

> I agree - let's use commontk.org as the main wiki.  I added a link at the
> top of the github wiki pointing over to commontk.org.
>
> It would be nice if github offered a real bug tracker (the 'issues' aren't
> very good for this).  Any other suggestions for a ctk bug tracker?
>
> -Steve
>
>
> On Jun/15/10 12:39 PM, Stephen Aylward wrote:
>
>> We should us the existing wiki at commontk.org - we have much more
>> control over it.
>>
>> We should also use the commontk developers email list, and not github
>> - because I cannot reply to a github posting via email.
>>
>> s
>>
>> On Tue, Jun 15, 2010 at 12:16 PM, GitHub<noreply at github.com>  wrote:
>>
>>> commontk reported an issue:
>>>
>>> Hi Folks,
>>>
>>> 1) Github provide a wiki - Should we use it ?
>>>
>>> 2) Should we add a pointer to this one:
>>> http://www.commontk.org/index.php/Main_Page  ?
>>>
>>> 3) Who want to be organize the doc / bug people with some "stuff" need to
>>> be updated .. ?
>>>
>>> Jc
>>>
>>>
>>>
>>> View Issue: http://github.com/commontk/CTK/issues#issue/6
>>>
>>>
>>
>>
>>  _______________________________________________
> Ctk-developers mailing list
> Ctk-developers at commontk.org
> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>



-- 
Phone: 1-518-836-2174
Ext: 304
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From sophie.chen at kitware.com  Fri Jun 18 16:23:34 2010
From: sophie.chen at kitware.com (Sophie Chen)
Date: Fri, 18 Jun 2010 12:23:34 -0400
Subject: [Ctk-developers] Mac Build CTK Error?
Message-ID: <AANLkTinTd96GfzecOftdLq3Z9FDVfpamBHMEwtleA0tW@mail.gmail.com>

Hello,

I was just at the 'make' step of the build
instructions<http://www.commontk.org/index.php/Build_Instructions> on
the MAC OS X when this error showed up and made itself at home.

I downloaded yesterday's version of CTK, and updated today.

[ 85%] Performing build step for 'CTK-build'
[  0%] Building CXX object
Libs/Core/CMakeFiles/CTKCore.dir/ctkCommandLineParser.cpp.o
cc1plus: error: unrecognized command line option "-fdiagnostics-show-option"
make[5]: *** [Libs/Core/CMakeFiles/CTKCore.dir/ctkCommandLineParser.cpp.o]
Error 1
make[4]: *** [Libs/Core/CMakeFiles/CTKCore.dir/all] Error 2
make[3]: *** [all] Error 2
make[2]: *** [CMakeExternals/Stamp/CTK-build/CTK-build-build] Error 2
make[1]: *** [CMakeFiles/CTK-build.dir/all] Error 2
make: *** [all] Error 2
MinasMorgul:CTK sophie$


This gcc version does not seem to be support the command line option.

gcc --version
i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465)
Copyright (C) 2005 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.


Could you please give some advice how to avoid this problem?

Thanks,
Sophie
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From jchris.fillionr at kitware.com  Fri Jun 18 17:09:51 2010
From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin)
Date: Fri, 18 Jun 2010 13:09:51 -0400
Subject: [Ctk-developers] Mac Build CTK Error?
In-Reply-To: <AANLkTinTd96GfzecOftdLq3Z9FDVfpamBHMEwtleA0tW@mail.gmail.com>
References: <AANLkTinTd96GfzecOftdLq3Z9FDVfpamBHMEwtleA0tW@mail.gmail.com>
Message-ID: <AANLkTinmNMJElQcgh9w24-Xjj38Ejm-ioc-XHJpsuMXl@mail.gmail.com>

Thanks for reporting that problem.

I started to work on a fix this morning.  Should be fixed in the next hours.

Thks
Jc

On Fri, Jun 18, 2010 at 12:23 PM, Sophie Chen <sophie.chen at kitware.com>wrote:

> Hello,
>
> I was just at the 'make' step of the build instructions<http://www.commontk.org/index.php/Build_Instructions> on
> the MAC OS X when this error showed up and made itself at home.
>
> I downloaded yesterday's version of CTK, and updated today.
>
> [ 85%] Performing build step for 'CTK-build'
> [  0%] Building CXX object
> Libs/Core/CMakeFiles/CTKCore.dir/ctkCommandLineParser.cpp.o
> cc1plus: error: unrecognized command line option
> "-fdiagnostics-show-option"
> make[5]: *** [Libs/Core/CMakeFiles/CTKCore.dir/ctkCommandLineParser.cpp.o]
> Error 1
> make[4]: *** [Libs/Core/CMakeFiles/CTKCore.dir/all] Error 2
> make[3]: *** [all] Error 2
> make[2]: *** [CMakeExternals/Stamp/CTK-build/CTK-build-build] Error 2
> make[1]: *** [CMakeFiles/CTK-build.dir/all] Error 2
> make: *** [all] Error 2
> MinasMorgul:CTK sophie$
>
>
> This gcc version does not seem to be support the command line option.
>
> gcc --version
> i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465)
> Copyright (C) 2005 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions.  There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>
>
> Could you please give some advice how to avoid this problem?
>
> Thanks,
> Sophie
>
>
>
>
> _______________________________________________
> Ctk-developers mailing list
> Ctk-developers at commontk.org
> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>
>


-- 
Phone: 1-518-836-2174
Ext: 304
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From jchris.fillionr at kitware.com  Fri Jun 18 19:55:33 2010
From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin)
Date: Fri, 18 Jun 2010 15:55:33 -0400
Subject: [Ctk-developers] Mac Build CTK Error?
In-Reply-To: <AANLkTinmNMJElQcgh9w24-Xjj38Ejm-ioc-XHJpsuMXl@mail.gmail.com>
References: <AANLkTinTd96GfzecOftdLq3Z9FDVfpamBHMEwtleA0tW@mail.gmail.com> 
	<AANLkTinmNMJElQcgh9w24-Xjj38Ejm-ioc-XHJpsuMXl@mail.gmail.com>
Message-ID: <AANLkTil5jphVL8WntrS-h-zdySNTvhCz1B4s67lHpUCZ@mail.gmail.com>

Sophie,

Would you mean to give a try. A fix has been pushed.
See
http://github.com/commontk/CTK/commit/c2b15303ad42788c0d506ed44853d8dd512c01c2

Thks
Jc

On Fri, Jun 18, 2010 at 1:09 PM, Jean-Christophe Fillion-Robin <
jchris.fillionr at kitware.com> wrote:

> Thanks for reporting that problem.
>
> I started to work on a fix this morning.  Should be fixed in the next
> hours.
>
> Thks
> Jc
>
> On Fri, Jun 18, 2010 at 12:23 PM, Sophie Chen <sophie.chen at kitware.com>wrote:
>
>> Hello,
>>
>> I was just at the 'make' step of the build instructions<http://www.commontk.org/index.php/Build_Instructions> on
>> the MAC OS X when this error showed up and made itself at home.
>>
>> I downloaded yesterday's version of CTK, and updated today.
>>
>> [ 85%] Performing build step for 'CTK-build'
>> [  0%] Building CXX object
>> Libs/Core/CMakeFiles/CTKCore.dir/ctkCommandLineParser.cpp.o
>> cc1plus: error: unrecognized command line option
>> "-fdiagnostics-show-option"
>> make[5]: *** [Libs/Core/CMakeFiles/CTKCore.dir/ctkCommandLineParser.cpp.o]
>> Error 1
>> make[4]: *** [Libs/Core/CMakeFiles/CTKCore.dir/all] Error 2
>> make[3]: *** [all] Error 2
>> make[2]: *** [CMakeExternals/Stamp/CTK-build/CTK-build-build] Error 2
>> make[1]: *** [CMakeFiles/CTK-build.dir/all] Error 2
>> make: *** [all] Error 2
>> MinasMorgul:CTK sophie$
>>
>>
>> This gcc version does not seem to be support the command line option.
>>
>> gcc --version
>> i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465)
>> Copyright (C) 2005 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions.  There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>> PURPOSE.
>>
>>
>> Could you please give some advice how to avoid this problem?
>>
>> Thanks,
>> Sophie
>>
>>
>>
>>
>> _______________________________________________
>> Ctk-developers mailing list
>> Ctk-developers at commontk.org
>> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>>
>>
>
>
> --
> Phone: 1-518-836-2174
> Ext: 304
>



-- 
Phone: 1-518-836-2174
Ext: 304
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From nicolas_rannou at hms.harvard.edu  Fri Jun 18 21:52:10 2010
From: nicolas_rannou at hms.harvard.edu (Nicolas Rannou)
Date: Fri, 18 Jun 2010 17:52:10 -0400
Subject: [Ctk-developers] Mac Build CTK Error?
In-Reply-To: <AANLkTil5jphVL8WntrS-h-zdySNTvhCz1B4s67lHpUCZ@mail.gmail.com>
References: <AANLkTinTd96GfzecOftdLq3Z9FDVfpamBHMEwtleA0tW@mail.gmail.com>
	<AANLkTinmNMJElQcgh9w24-Xjj38Ejm-ioc-XHJpsuMXl@mail.gmail.com>
	<AANLkTil5jphVL8WntrS-h-zdySNTvhCz1B4s67lHpUCZ@mail.gmail.com>
Message-ID: <C877A285-A95E-4401-9C97-9DAB7C2524F6@hms.harvard.edu>

Hi Jc,

I updated CTK and rebuilt everything and I got the same error.

[  0%] Building CXX object Libs/Core/CMakeFiles/CTKCore.dir/ 
ctkCommandLineParser.cpp.o
cc1plus: error: unrecognized command line option "-fdiagnostics-show- 
option"
gmake[5]: *** [Libs/Core/CMakeFiles/CTKCore.dir/ 
ctkCommandLineParser.cpp.o] Error 1
gmake[5]: Leaving directory `/Users/nr52/workspace/CTK/CTK-build'
gmake[4]: *** [Libs/Core/CMakeFiles/CTKCore.dir/all] Error 2
gmake[4]: Leaving directory `/Users/nr52/workspace/CTK/CTK-build'
gmake[3]: Leaving directory `/Users/nr52/workspace/CTK/CTK-build'
gmake[3]: *** [all] Error 2
make[2]: *** [CMakeExternals/Stamp/CTK-build/CTK-build-build] Error 2
make[1]: *** [CMakeFiles/CTK-build.dir/all] Error 2

I guess something is wrong in the "CMake/ 
ctkFunctionCheckCompilerFlags.cmake" since I get this message at the  
beginning of the compilation. Unfortunatelly, I didn't have time to  
investigate it at all yet... :(

Macintosh-7:CTK nr52$ make clean
Macintosh-7:CTK nr52$ make -j2
-- Compiler Flags [-fdiagnostics-show-option] supported
-- Compiler Flags [-fstack-protector-all] supported

     Nicolas



On Jun 18, 2010, at 3:55 PM, Jean-Christophe Fillion-Robin wrote:

> Sophie,
>
> Would you mean to give a try. A fix has been pushed.
> See http://github.com/commontk/CTK/commit/c2b15303ad42788c0d506ed44853d8dd512c01c2
>
> Thks
> Jc
>
> On Fri, Jun 18, 2010 at 1:09 PM, Jean-Christophe Fillion-Robin <jchris.fillionr at kitware.com 
> > wrote:
> Thanks for reporting that problem.
>
> I started to work on a fix this morning.  Should be fixed in the  
> next hours.
>
> Thks
> Jc
>
> On Fri, Jun 18, 2010 at 12:23 PM, Sophie Chen  
> <sophie.chen at kitware.com> wrote:
> Hello,
>
> I was just at the 'make' step of the build instructions on the MAC  
> OS X when this error showed up and made itself at home.
>
> I downloaded yesterday's version of CTK, and updated today.
>
> [ 85%] Performing build step for 'CTK-build'
> [  0%] Building CXX object Libs/Core/CMakeFiles/CTKCore.dir/ 
> ctkCommandLineParser.cpp.o
> cc1plus: error: unrecognized command line option "-fdiagnostics-show- 
> option"
> make[5]: *** [Libs/Core/CMakeFiles/CTKCore.dir/ 
> ctkCommandLineParser.cpp.o] Error 1
> make[4]: *** [Libs/Core/CMakeFiles/CTKCore.dir/all] Error 2
> make[3]: *** [all] Error 2
> make[2]: *** [CMakeExternals/Stamp/CTK-build/CTK-build-build] Error 2
> make[1]: *** [CMakeFiles/CTK-build.dir/all] Error 2
> make: *** [all] Error 2
> MinasMorgul:CTK sophie$
>
> This gcc version does not seem to be support the command line option.
>
> gcc --version
> i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465)
> Copyright (C) 2005 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions.  There  
> is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR  
> PURPOSE.
>
> Could you please give some advice how to avoid this problem?
>
> Thanks,
> Sophie
>
>
>
>
> _______________________________________________
> Ctk-developers mailing list
> Ctk-developers at commontk.org
> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>
>
>
>
> -- 
> Phone: 1-518-836-2174
> Ext: 304
>
>
>
> -- 
> Phone: 1-518-836-2174
> Ext: 304
> <ATT00001..txt>

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From jchris.fillionr at kitware.com  Sat Jun 19 23:54:20 2010
From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin)
Date: Sat, 19 Jun 2010 19:54:20 -0400
Subject: [Ctk-developers] Mac Build CTK Error?
In-Reply-To: <C877A285-A95E-4401-9C97-9DAB7C2524F6@hms.harvard.edu>
References: <AANLkTinTd96GfzecOftdLq3Z9FDVfpamBHMEwtleA0tW@mail.gmail.com> 
	<AANLkTinmNMJElQcgh9w24-Xjj38Ejm-ioc-XHJpsuMXl@mail.gmail.com> 
	<AANLkTil5jphVL8WntrS-h-zdySNTvhCz1B4s67lHpUCZ@mail.gmail.com> 
	<C877A285-A95E-4401-9C97-9DAB7C2524F6@hms.harvard.edu>
Message-ID: <AANLkTilMY8A9ak4gaLloaktfE4RHKPrBKPqQ7naCgqIW@mail.gmail.com>

I think we are all set now.
See
http://github.com/commontk/CTK/commit/bdb2e040022c1e082016b6646eac0d57f987437a

Thanks
Jc

On Fri, Jun 18, 2010 at 5:52 PM, Nicolas Rannou <
nicolas_rannou at hms.harvard.edu> wrote:

> Hi Jc,
>
> I updated CTK and rebuilt everything and I got the same error.
>
> [  0%] Building CXX object
> Libs/Core/CMakeFiles/CTKCore.dir/ctkCommandLineParser.cpp.o
> cc1plus: error: unrecognized command line option
> "-fdiagnostics-show-option"
> gmake[5]: *** [Libs/Core/CMakeFiles/CTKCore.dir/ctkCommandLineParser.cpp.o]
> Error 1
> gmake[5]: Leaving directory `/Users/nr52/workspace/CTK/CTK-build'
> gmake[4]: *** [Libs/Core/CMakeFiles/CTKCore.dir/all] Error 2
> gmake[4]: Leaving directory `/Users/nr52/workspace/CTK/CTK-build'
> gmake[3]: Leaving directory `/Users/nr52/workspace/CTK/CTK-build'
> gmake[3]: *** [all] Error 2
> make[2]: *** [CMakeExternals/Stamp/CTK-build/CTK-build-build] Error 2
> make[1]: *** [CMakeFiles/CTK-build.dir/all] Error 2
>
> I guess something is wrong in the
> "CMake/ctkFunctionCheckCompilerFlags.cmake" since I get this message at the
> beginning of the compilation. Unfortunatelly, I didn't have time to
> investigate it at all yet... :(
>
> Macintosh-7:CTK nr52$ make clean
> Macintosh-7:CTK nr52$ make -j2
> -- Compiler Flags [-fdiagnostics-show-option] supported
> -- Compiler Flags [-fstack-protector-all] supported
>
>     Nicolas
>
>
>
> On Jun 18, 2010, at 3:55 PM, Jean-Christophe Fillion-Robin wrote:
>
> Sophie,
>
> Would you mean to give a try. A fix has been pushed.
> See
> http://github.com/commontk/CTK/commit/c2b15303ad42788c0d506ed44853d8dd512c01c2
>
> Thks
> Jc
>
> On Fri, Jun 18, 2010 at 1:09 PM, Jean-Christophe Fillion-Robin <
> jchris.fillionr at kitware.com> wrote:
>
>> Thanks for reporting that problem.
>>
>> I started to work on a fix this morning.  Should be fixed in the next
>> hours.
>>
>> Thks
>> Jc
>>
>> On Fri, Jun 18, 2010 at 12:23 PM, Sophie Chen <sophie.chen at kitware.com>wrote:
>>
>>> Hello,
>>>
>>> I was just at the 'make' step of the build instructions<http://www.commontk.org/index.php/Build_Instructions> on
>>> the MAC OS X when this error showed up and made itself at home.
>>>
>>> I downloaded yesterday's version of CTK, and updated today.
>>>
>>> [ 85%] Performing build step for 'CTK-build'
>>> [  0%] Building CXX object
>>> Libs/Core/CMakeFiles/CTKCore.dir/ctkCommandLineParser.cpp.o
>>> cc1plus: error: unrecognized command line option
>>> "-fdiagnostics-show-option"
>>> make[5]: ***
>>> [Libs/Core/CMakeFiles/CTKCore.dir/ctkCommandLineParser.cpp.o] Error 1
>>> make[4]: *** [Libs/Core/CMakeFiles/CTKCore.dir/all] Error 2
>>> make[3]: *** [all] Error 2
>>> make[2]: *** [CMakeExternals/Stamp/CTK-build/CTK-build-build] Error 2
>>> make[1]: *** [CMakeFiles/CTK-build.dir/all] Error 2
>>> make: *** [all] Error 2
>>> MinasMorgul:CTK sophie$
>>>
>>>
>>> This gcc version does not seem to be support the command line option.
>>>
>>> gcc --version
>>> i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465)
>>> Copyright (C) 2005 Free Software Foundation, Inc.
>>> This is free software; see the source for copying conditions.  There is
>>> NO
>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>>> PURPOSE.
>>>
>>>
>>> Could you please give some advice how to avoid this problem?
>>>
>>> Thanks,
>>> Sophie
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> Ctk-developers mailing list
>>> Ctk-developers at commontk.org
>>> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>>>
>>>
>>
>>
>> --
>> Phone: 1-518-836-2174
>> Ext: 304
>>
>
>
>
> --
> Phone: 1-518-836-2174
> Ext: 304
> <ATT00001..txt>
>
>
>


-- 
Phone: 1-518-836-2174
Ext: 304
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From Nicolas_Rannou at hms.harvard.edu  Sun Jun 20 02:14:05 2010
From: Nicolas_Rannou at hms.harvard.edu (Nicolas Rannou)
Date: Sat, 19 Jun 2010 22:14:05 -0400
Subject: [Ctk-developers] Mac Build CTK Error?
In-Reply-To: <AANLkTilMY8A9ak4gaLloaktfE4RHKPrBKPqQ7naCgqIW@mail.gmail.com>
References: <AANLkTinTd96GfzecOftdLq3Z9FDVfpamBHMEwtleA0tW@mail.gmail.com>
	<AANLkTinmNMJElQcgh9w24-Xjj38Ejm-ioc-XHJpsuMXl@mail.gmail.com>
	<AANLkTil5jphVL8WntrS-h-zdySNTvhCz1B4s67lHpUCZ@mail.gmail.com>
	<C877A285-A95E-4401-9C97-9DAB7C2524F6@hms.harvard.edu>
	<AANLkTilMY8A9ak4gaLloaktfE4RHKPrBKPqQ7naCgqIW@mail.gmail.com>
Message-ID: <56A68FAE-3CFE-4C40-A158-0903AB6B64CF@hms.harvard.edu>

Thanks it's working now!

     Nicolas


On Jun 19, 2010, at 7:54 PM, Jean-Christophe Fillion-Robin wrote:

> I think we are all set now.
> See http://github.com/commontk/CTK/commit/bdb2e040022c1e082016b6646eac0d57f987437a
>
> Thanks
> Jc
>
> On Fri, Jun 18, 2010 at 5:52 PM, Nicolas Rannou <nicolas_rannou at hms.harvard.edu 
> > wrote:
> Hi Jc,
>
> I updated CTK and rebuilt everything and I got the same error.
>
> [  0%] Building CXX object Libs/Core/CMakeFiles/CTKCore.dir/ 
> ctkCommandLineParser.cpp.o
> cc1plus: error: unrecognized command line option "-fdiagnostics-show- 
> option"
> gmake[5]: *** [Libs/Core/CMakeFiles/CTKCore.dir/ 
> ctkCommandLineParser.cpp.o] Error 1
> gmake[5]: Leaving directory `/Users/nr52/workspace/CTK/CTK-build'
> gmake[4]: *** [Libs/Core/CMakeFiles/CTKCore.dir/all] Error 2
> gmake[4]: Leaving directory `/Users/nr52/workspace/CTK/CTK-build'
> gmake[3]: Leaving directory `/Users/nr52/workspace/CTK/CTK-build'
> gmake[3]: *** [all] Error 2
> make[2]: *** [CMakeExternals/Stamp/CTK-build/CTK-build-build] Error 2
> make[1]: *** [CMakeFiles/CTK-build.dir/all] Error 2
>
> I guess something is wrong in the "CMake/ 
> ctkFunctionCheckCompilerFlags.cmake" since I get this message at the  
> beginning of the compilation. Unfortunatelly, I didn't have time to  
> investigate it at all yet... :(
>
> Macintosh-7:CTK nr52$ make clean
> Macintosh-7:CTK nr52$ make -j2
> -- Compiler Flags [-fdiagnostics-show-option] supported
> -- Compiler Flags [-fstack-protector-all] supported
>
>     Nicolas
>
>
>
> On Jun 18, 2010, at 3:55 PM, Jean-Christophe Fillion-Robin wrote:
>
>> Sophie,
>>
>> Would you mean to give a try. A fix has been pushed.
>> See http://github.com/commontk/CTK/commit/c2b15303ad42788c0d506ed44853d8dd512c01c2
>>
>> Thks
>> Jc
>>
>> On Fri, Jun 18, 2010 at 1:09 PM, Jean-Christophe Fillion-Robin <jchris.fillionr at kitware.com 
>> > wrote:
>> Thanks for reporting that problem.
>>
>> I started to work on a fix this morning.  Should be fixed in the  
>> next hours.
>>
>> Thks
>> Jc
>>
>> On Fri, Jun 18, 2010 at 12:23 PM, Sophie Chen <sophie.chen at kitware.com 
>> > wrote:
>> Hello,
>>
>> I was just at the 'make' step of the build instructions on the MAC  
>> OS X when this error showed up and made itself at home.
>>
>> I downloaded yesterday's version of CTK, and updated today.
>>
>> [ 85%] Performing build step for 'CTK-build'
>> [  0%] Building CXX object Libs/Core/CMakeFiles/CTKCore.dir/ 
>> ctkCommandLineParser.cpp.o
>> cc1plus: error: unrecognized command line option "-fdiagnostics- 
>> show-option"
>> make[5]: *** [Libs/Core/CMakeFiles/CTKCore.dir/ 
>> ctkCommandLineParser.cpp.o] Error 1
>> make[4]: *** [Libs/Core/CMakeFiles/CTKCore.dir/all] Error 2
>> make[3]: *** [all] Error 2
>> make[2]: *** [CMakeExternals/Stamp/CTK-build/CTK-build-build] Error 2
>> make[1]: *** [CMakeFiles/CTK-build.dir/all] Error 2
>> make: *** [all] Error 2
>> MinasMorgul:CTK sophie$
>>
>> This gcc version does not seem to be support the command line option.
>>
>> gcc --version
>> i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465)
>> Copyright (C) 2005 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions.   
>> There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR  
>> PURPOSE.
>>
>> Could you please give some advice how to avoid this problem?
>>
>> Thanks,
>> Sophie
>>
>>
>>
>>
>> _______________________________________________
>> Ctk-developers mailing list
>> Ctk-developers at commontk.org
>> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>>
>>
>>
>>
>> -- 
>> Phone: 1-518-836-2174
>> Ext: 304
>>
>>
>>
>> -- 
>> Phone: 1-518-836-2174
>> Ext: 304
>> <ATT00001..txt>
>
>
>
>
> -- 
> Phone: 1-518-836-2174
> Ext: 304

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From sophie.chen at kitware.com  Mon Jun 21 03:49:38 2010
From: sophie.chen at kitware.com (Sophie Chen)
Date: Sun, 20 Jun 2010 23:49:38 -0400
Subject: [Ctk-developers] Mac Build CTK Error?
In-Reply-To: <AANLkTil5jphVL8WntrS-h-zdySNTvhCz1B4s67lHpUCZ@mail.gmail.com>
References: <AANLkTinTd96GfzecOftdLq3Z9FDVfpamBHMEwtleA0tW@mail.gmail.com>
	<AANLkTinmNMJElQcgh9w24-Xjj38Ejm-ioc-XHJpsuMXl@mail.gmail.com>
	<AANLkTil5jphVL8WntrS-h-zdySNTvhCz1B4s67lHpUCZ@mail.gmail.com>
Message-ID: <AANLkTilOPwi6ag0_CcmDE1GeyXcvXk892Gz8LB-3n8T7@mail.gmail.com>

Jc,

I'm going to build it tomorrow (Monday) first thing and let you know what
happens. Thanks for the update!

Sophie

On Fri, Jun 18, 2010 at 3:55 PM, Jean-Christophe Fillion-Robin <
jchris.fillionr at kitware.com> wrote:

> Sophie,
>
> Would you mean to give a try. A fix has been pushed.
> See
> http://github.com/commontk/CTK/commit/c2b15303ad42788c0d506ed44853d8dd512c01c2
>
> Thks
> Jc
>
>
> On Fri, Jun 18, 2010 at 1:09 PM, Jean-Christophe Fillion-Robin <
> jchris.fillionr at kitware.com> wrote:
>
>> Thanks for reporting that problem.
>>
>> I started to work on a fix this morning.  Should be fixed in the next
>> hours.
>>
>> Thks
>> Jc
>>
>> On Fri, Jun 18, 2010 at 12:23 PM, Sophie Chen <sophie.chen at kitware.com>wrote:
>>
>>> Hello,
>>>
>>> I was just at the 'make' step of the build instructions<http://www.commontk.org/index.php/Build_Instructions> on
>>> the MAC OS X when this error showed up and made itself at home.
>>>
>>> I downloaded yesterday's version of CTK, and updated today.
>>>
>>> [ 85%] Performing build step for 'CTK-build'
>>> [  0%] Building CXX object
>>> Libs/Core/CMakeFiles/CTKCore.dir/ctkCommandLineParser.cpp.o
>>> cc1plus: error: unrecognized command line option
>>> "-fdiagnostics-show-option"
>>> make[5]: ***
>>> [Libs/Core/CMakeFiles/CTKCore.dir/ctkCommandLineParser.cpp.o] Error 1
>>> make[4]: *** [Libs/Core/CMakeFiles/CTKCore.dir/all] Error 2
>>> make[3]: *** [all] Error 2
>>> make[2]: *** [CMakeExternals/Stamp/CTK-build/CTK-build-build] Error 2
>>> make[1]: *** [CMakeFiles/CTK-build.dir/all] Error 2
>>> make: *** [all] Error 2
>>> MinasMorgul:CTK sophie$
>>>
>>>
>>> This gcc version does not seem to be support the command line option.
>>>
>>> gcc --version
>>> i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465)
>>> Copyright (C) 2005 Free Software Foundation, Inc.
>>> This is free software; see the source for copying conditions.  There is
>>> NO
>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>>> PURPOSE.
>>>
>>>
>>> Could you please give some advice how to avoid this problem?
>>>
>>> Thanks,
>>> Sophie
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> Ctk-developers mailing list
>>> Ctk-developers at commontk.org
>>> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>>>
>>>
>>
>>
>> --
>> Phone: 1-518-836-2174
>> Ext: 304
>>
>
>
>
> --
> Phone: 1-518-836-2174
> Ext: 304
>
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From Arnaud_Gelas at hms.harvard.edu  Tue Jun 22 03:03:08 2010
From: Arnaud_Gelas at hms.harvard.edu (Gelas, Arnaud Joel Florent)
Date: Mon, 21 Jun 2010 23:03:08 -0400
Subject: [Ctk-developers] Mac build error
Message-ID: <F728FF7E1D825548B29121CE06DE51C66856335AFC@ITCCRMAIL01.MED.HARVARD.EDU>

Hi all,

I have just tried to build CTK and I get the following errors:
http://my.cdash.org/viewBuildError.php?buildid=76509

With some help, I can work on fixing these errors (at the NAMIC week).

Best,
Arnaud

From jchris.fillionr at kitware.com  Tue Jun 29 14:55:11 2010
From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin)
Date: Tue, 29 Jun 2010 10:55:11 -0400
Subject: [Ctk-developers] Superbuild / CMake 2.8.2 required for both Slicer
	and CTK
Message-ID: <AANLkTikcRnihV5QBpIZMHkblKiRaUdGI5W7RwdiCKI1T@mail.gmail.com>

Hi Folks,

CMake 2.8.2 was released few days ago.  See
http://www.cmake.org/cmake/resources/software.html

Before that release, Slicer and CTK were using a custom
ExternalProject.cmake module.  (See
http://github.com/commontk/CTK/commits/master/CMake/ExternalProject.cmake)

Now cmake latest release contains all required features, I will remove the
custom module from CTK repository.  Since Slicer superbuild was
relying on that file, it implies CMake 2.8.2 will now be required to "super"
build both CTK and Slicer.

That change will be effective by tomorrow.

Thks
Jc

-- 
Phone: 1-518-836-2174
Ext: 304
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From stephen.aylward at kitware.com  Tue Jun 29 15:15:45 2010
From: stephen.aylward at kitware.com (Stephen Aylward)
Date: Tue, 29 Jun 2010 11:15:45 -0400
Subject: [Ctk-developers] Superbuild / CMake 2.8.2 required for both
	Slicer and CTK
In-Reply-To: <AANLkTikcRnihV5QBpIZMHkblKiRaUdGI5W7RwdiCKI1T@mail.gmail.com>
References: <AANLkTikcRnihV5QBpIZMHkblKiRaUdGI5W7RwdiCKI1T@mail.gmail.com>
Message-ID: <AANLkTin83pshGTLQnA1_ZE1XNibbyGaenEm3bxjaHNV3@mail.gmail.com>

Can we keep compatibility with the older cmake by making the use of
that module conditional?

I am against everyone having to update their CMake to build Slicer, if
no meaningful functionality is provided.

s

On Tue, Jun 29, 2010 at 10:55 AM, Jean-Christophe Fillion-Robin
<jchris.fillionr at kitware.com> wrote:
> Hi Folks,
>
> CMake 2.8.2 was released few days ago.? See
> http://www.cmake.org/cmake/resources/software.html
>
> Before that release, Slicer and CTK were using a custom
> ExternalProject.cmake module.? (See
> http://github.com/commontk/CTK/commits/master/CMake/ExternalProject.cmake)
>
> Now cmake latest release contains all required features, I will remove the
> custom module from CTK repository.? Since Slicer superbuild was
> relying on that file, it implies CMake 2.8.2 will now be required to "super"
> build both CTK and Slicer.
>
> That change will be effective by tomorrow.
>
> Thks
> Jc
>
> --
> Phone: 1-518-836-2174
> Ext: 304
>
> _______________________________________________
> Ctk-developers mailing list
> Ctk-developers at commontk.org
> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>
>



-- 

==============================
Stephen R. Aylward, Ph.D.
Director of Medical Imaging Research
Kitware, Inc. - North Carolina Office
http://www.kitware.com
stephen.aylward (Skype)
(919) 969-6990 x300


From jchris.fillionr at kitware.com  Tue Jun 29 15:32:01 2010
From: jchris.fillionr at kitware.com (Jean-Christophe Fillion-Robin)
Date: Tue, 29 Jun 2010 11:32:01 -0400
Subject: [Ctk-developers] Superbuild / CMake 2.8.2 required for both
	Slicer and CTK
In-Reply-To: <AANLkTin83pshGTLQnA1_ZE1XNibbyGaenEm3bxjaHNV3@mail.gmail.com>
References: <AANLkTikcRnihV5QBpIZMHkblKiRaUdGI5W7RwdiCKI1T@mail.gmail.com> 
	<AANLkTin83pshGTLQnA1_ZE1XNibbyGaenEm3bxjaHNV3@mail.gmail.com>
Message-ID: <AANLkTinOlz1dcebuAcWh2Cy8VY0AobhrH6Foy-jP34fT@mail.gmail.com>

Hi,

I would prefer do the move to CMake 2.8.2 sooner than later. Preferably
ahead of the alpha release of SlicerQt.

Features I would like to benefit from are:
  - MD5 sum for archived download as External Project, particularly useful
to confirm the integrity of the archive.
  - better support for VS2010 / Windows7
  - a git support tested by cmake dashboard - Not the one I hacked/added to
it ...
  - ExternalProject is major feature - I would prefer use the official
module - it will make resolution of potential problem easier.

See http://www.cmake.org/files/v2.8/CMakeChangeLog-2.8.2

Note that only* Slicer / Superbuild* would be impacted

Thks
Jc

On Tue, Jun 29, 2010 at 11:15 AM, Stephen Aylward <
stephen.aylward at kitware.com> wrote:

> Can we keep compatibility with the older cmake by making the use of
> that module conditional?
>
> I am against everyone having to update their CMake to build Slicer, if
> no meaningful functionality is provided.
>
> s
>
> On Tue, Jun 29, 2010 at 10:55 AM, Jean-Christophe Fillion-Robin
> <jchris.fillionr at kitware.com> wrote:
> > Hi Folks,
> >
> > CMake 2.8.2 was released few days ago.  See
> > http://www.cmake.org/cmake/resources/software.html
> >
> > Before that release, Slicer and CTK were using a custom
> > ExternalProject.cmake module.  (See
> >
> http://github.com/commontk/CTK/commits/master/CMake/ExternalProject.cmake)
> >
> > Now cmake latest release contains all required features, I will remove
> the
> > custom module from CTK repository.  Since Slicer superbuild was
> > relying on that file, it implies CMake 2.8.2 will now be required to
> "super"
> > build both CTK and Slicer.
> >
> > That change will be effective by tomorrow.
> >
> > Thks
> > Jc
> >
> > --
> > Phone: 1-518-836-2174
> > Ext: 304
> >
> > _______________________________________________
> > Ctk-developers mailing list
> > Ctk-developers at commontk.org
> > http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
> >
> >
>
>
>
> --
>
> ==============================
> Stephen R. Aylward, Ph.D.
> Director of Medical Imaging Research
> Kitware, Inc. - North Carolina Office
> http://www.kitware.com
> stephen.aylward (Skype)
> (919) 969-6990 x300
>



-- 
Phone: 1-518-836-2174
Ext: 304
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From stephen.aylward at kitware.com  Tue Jun 29 16:01:22 2010
From: stephen.aylward at kitware.com (Stephen Aylward)
Date: Tue, 29 Jun 2010 12:01:22 -0400
Subject: [Ctk-developers] [slicer-devel] Superbuild / CMake 2.8.2
	required for both Slicer and CTK
In-Reply-To: <00a001cb179f$42a17eb0$c7e47c10$@queensu.ca>
References: <AANLkTikcRnihV5QBpIZMHkblKiRaUdGI5W7RwdiCKI1T@mail.gmail.com> 
	<AANLkTin83pshGTLQnA1_ZE1XNibbyGaenEm3bxjaHNV3@mail.gmail.com> 
	<00a001cb179f$42a17eb0$c7e47c10$@queensu.ca>
Message-ID: <AANLkTikrwuYXemq6xUtSnYmPQse8PW8MtolDOhL_JQjh@mail.gmail.com>

Great - but we shouldn't require everyone to upgrade.

s

On Tue, Jun 29, 2010 at 11:25 AM, Andras Lasso <lasso at cs.queensu.ca> wrote:
> CMake 2.8.2 is better also because it contains some important fixes for
> Windows 7 (with 2.8.1 Slicer build fails randomly + packaging always fails
> on Windows 7 -
> http://www.cmake.org/Bug/bug_view_advanced_page.php?bug_id=10790).
>
> Andras
>
> -----Original Message-----
> From: slicer-devel-bounces at bwh.harvard.edu
> [mailto:slicer-devel-bounces at bwh.harvard.edu] On Behalf Of Stephen Aylward
> Sent: Tuesday, June 29, 2010 11:16 AM
> To: Jean-Christophe Fillion-Robin
> Cc: Slicer devel; ctk-developers at commontk.org
> Subject: Re: [slicer-devel] [Ctk-developers] Superbuild / CMake 2.8.2
> required for both Slicer and CTK
>
> Can we keep compatibility with the older cmake by making the use of
> that module conditional?
>
> I am against everyone having to update their CMake to build Slicer, if
> no meaningful functionality is provided.
>
> s
>
> On Tue, Jun 29, 2010 at 10:55 AM, Jean-Christophe Fillion-Robin
> <jchris.fillionr at kitware.com> wrote:
>> Hi Folks,
>>
>> CMake 2.8.2 was released few days ago.? See
>> http://www.cmake.org/cmake/resources/software.html
>>
>> Before that release, Slicer and CTK were using a custom
>> ExternalProject.cmake module.? (See
>> http://github.com/commontk/CTK/commits/master/CMake/ExternalProject.cmake)
>>
>> Now cmake latest release contains all required features, I will remove the
>> custom module from CTK repository.? Since Slicer superbuild was
>> relying on that file, it implies CMake 2.8.2 will now be required to
> "super"
>> build both CTK and Slicer.
>>
>> That change will be effective by tomorrow.
>>
>> Thks
>> Jc
>>
>> --
>> Phone: 1-518-836-2174
>> Ext: 304
>>
>> _______________________________________________
>> Ctk-developers mailing list
>> Ctk-developers at commontk.org
>> http://public.kitware.com/cgi-bin/mailman/listinfo/ctk-developers
>>
>>
>
>
>
> --
>
> ==============================
> Stephen R. Aylward, Ph.D.
> Director of Medical Imaging Research
> Kitware, Inc. - North Carolina Office
> http://www.kitware.com
> stephen.aylward (Skype)
> (919) 969-6990 x300
> _______________________________________________
> slicer-devel mailing list
> slicer-devel at bwh.harvard.edu
> http://massmail.spl.harvard.edu/mailman/listinfo/slicer-devel
> To unsubscribe: send email to slicer-devel-request at massmail.spl.harvard.edu
> with unsubscribe as the subject
>
>
>
>



-- 

==============================
Stephen R. Aylward, Ph.D.
Director of Medical Imaging Research
Kitware, Inc. - North Carolina Office
http://www.kitware.com
stephen.aylward (Skype)
(919) 969-6990 x300