From goretzki.imre at gmail.com  Wed Oct  3 10:49:03 2018
From: goretzki.imre at gmail.com (Imre Goretzki)
Date: Wed, 03 Oct 2018 08:49:03 -0600
Subject: [ITK] Invoice from 10/03/2018
Message-ID: <38947024801057518866.B6F78C972E1FCE8C@itk.org>

Good day,



I am trying to settle the balance payment, my proforma at hand is $2,86026
while your invoice (is attached) comes to $1,970.71
Kindly confirm the amount I was just about to pay the bigger amount
now I am waiting for your final confirmation so to pay the balance.

Hope to hear from you soon.


*
Imre Goretzki
927-931-0699, direct (pls. try here first, during business hours)
927-931-6687, office
927-931-3827, fax
927-931-3214, mobile
0630/5916134, WhatsApp
E:goretzki.imre at gmail.com

*
Sent from my iPhone
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From kjwjj627 at gmail.com  Wed Oct  3 11:30:04 2018
From: kjwjj627 at gmail.com (wonnybro)
Date: Wed, 3 Oct 2018 08:30:04 -0700 (MST)
Subject: [ITK] [ITK-users] DVFs interpolation by BSpline
Message-ID: <1538580604795-0.post@n7.nabble.com>

Hi, ITK users

I really really need your help, please help me...
I am trying to do BSpline interpolation of DVFs obtained by image
registrations of 10 images. 
I'm trying to modify the BSplineScatteredDataPointSetToImageFilter from the
Insight Journal. However,
I am having trouble to find the correct parameter in order to make the
filter work. 
I'll have scattered 3-D points of several DVFs over time and I want to fit
these DVFs by a 4-D Bspline. Afterwards I want to evaluate output DVF to one
time step.

Here you can find the code, unfortunately it crashes.

Please help me...please.

Thanks in advance.

#include "itkBSplineScatteredDataPointSetToImageFilter.h"
#include "itkPointSet.h"
#include "itkImage.h"
#include "itkVectorImage.h"
#include "itkImageFileReader.h"
#include "itkImageFileWriter.h"

int main (int argc, char* argv[])
{
  const unsigned int ImageDimension = 3;

  using VectorType = itk::Vector<float, ImageDimension>;
  using InputImageType = itk::Image<VectorType, ImageDimension>;
  using InputPointType = InputImageType::PointType;
  using OutputImageType = itk::Image<VectorType, ImageDimension + 1>;
  using PointSetType = itk::PointSet<VectorType, ImageDimension + 1>;
  using OutputPointType = PointSetType::PointType;
  using ReaderType = itk::ImageFileReader<InputImageType>;
  using WriterType = itk::ImageFileWriter<OutputImageType>;

  PointSetType::Pointer pointSet = PointSetType::New();
  unsigned long pointId = 0;
  InputImageType::PointType origin;
  InputImageType::SpacingType spacing;
  InputImageType::SizeType size;
  for (int i = 1; i < argc; ++i)
  {
    ReaderType::Pointer reader = ReaderType::New();
    std::cout << "Reading file " << argv[i] << std::endl;
    reader->SetFileName(argv[i]);
    try
    {
      reader->Update();
    }
    catch (itk::ExceptionObject & err)
    {
      std::cout << "ExceptionObject caught !" << std::endl;
      std::cout << err << std::endl;
      return EXIT_FAILURE;
    }
    using IteratorType = itk::ImageRegionConstIterator<InputImageType>;
    const InputImageType * image = reader->GetOutput();
    IteratorType it(image, image->GetBufferedRegion());
    it.GoToBegin();
    InputPointType inPoint;
    OutputPointType outPoint;
    int iCount = 0;
    while (!it.IsAtEnd())
    {
      inPoint = image->GetPixel(it.GetIndex());
      for (int j = 0; j < ImageDimension; ++j)
        outPoint[j] = inPoint[i];
      outPoint[ImageDimension] = i - 1;
      pointSet->SetPoint(pointId, outPoint);
      // Transfer the pixel data to the value associated with the point.
      pointSet->SetPointData(pointId, it.Get());
      ++it;
      ++pointId;
      ++iCount;
    }
    std::cout << "Number of points in " << argv[i] << " = " << iCount <<
std::endl;
    std::cout << "Total number of points = " <<
pointSet->GetNumberOfPoints() << std::endl;
    origin = image->GetOrigin();
    spacing = image->GetSpacing();
    size = image->GetLargestPossibleRegion().GetSize();
  }

  typedef itk::BSplineScatteredDataPointSetToImageFilter < PointSetType,
OutputImageType > SplineFilterType;
  SplineFilterType::Pointer splineFilter = SplineFilterType::New();

  int splineorder=3; // complexity of the spline

  SplineFilterType::ArrayType ncontrol;
  ncontrol[0]=splineorder + 1;
  SplineFilterType::ArrayType closedim;
  closedim[0]= 0;

  OutputImageType::PointType parametricDomainOrigin;
  OutputImageType::SpacingType parametricDomainSpacing;
  OutputImageType::SizeType parametricDomainSize;
  for (int i = 0; i < ImageDimension; ++i)
  {
    parametricDomainOrigin[i] = origin[i];
    parametricDomainSpacing[i] = spacing[i];
    parametricDomainSize[i] = size[i];
  }
  parametricDomainOrigin[ImageDimension] = 0;
  parametricDomainSize[ImageDimension] = argc - 2;
  parametricDomainSpacing[ImageDimension] = 10.0;

  splineFilter->SetGenerateOutputImage( true );   // the only reason to turn
this off is if one only wants to use the control point lattice for further
processing
  splineFilter->SetInput ( pointSet );
  splineFilter->SetSplineOrder ( splineorder );
  splineFilter->SetNumberOfControlPoints ( ncontrol );
  splineFilter->SetNumberOfLevels( 3 );
  splineFilter->SetCloseDimension ( closedim );
  splineFilter->SetSize( parametricDomainSize );
  splineFilter->SetSpacing( parametricDomainSpacing );
  splineFilter->SetOrigin( parametricDomainOrigin );
  std::cout << "Before update spline filter" << std::endl;
  splineFilter->Update();
  std::cout << "After update spline filter" << std::endl;

  WriterType::Pointer writer = WriterType::New();
  writer->SetInput(splineFilter->GetOutput());
  writer->SetFileName("Output.mhd");
  writer->Update();
  std::cout << "After write image filter" << std::endl;

  return EXIT_SUCCESS;
};



--
Sent from: http://itk-users.7.n7.nabble.com/
The ITK community is transitioning from this mailing list to discourse.itk.org. Please join us there!
________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
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Kitware offers ITK Training Courses, for more information visit:
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From dzenanz at gmail.com  Wed Oct  3 14:10:44 2018
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 3 Oct 2018 14:10:44 -0400
Subject: [ITK] [ITK-users] DVFs interpolation by BSpline
In-Reply-To: <1538580604795-0.post@n7.nabble.com>
References: <1538580604795-0.post@n7.nabble.com>
Message-ID: <CAPf2UMS9gEwOP1BWnu5ctuFG_MdJYFA6JMWLH1zhmEYYPGwc8w@mail.gmail.com>

Hi JongWon,

welcome to ITK! To reproduce your problem we will need the input file too.
If it crashes with different input files, please provide the smallest one.
Also, we have migrated to the forum <https://discourse.itk.org/>, so please
post the updated question there.

Regards,
D?enan

On Wed, Oct 3, 2018 at 11:30 AM wonnybro <kjwjj627 at gmail.com> wrote:

> Hi, ITK users
>
> I really really need your help, please help me...
> I am trying to do BSpline interpolation of DVFs obtained by image
> registrations of 10 images.
> I'm trying to modify the BSplineScatteredDataPointSetToImageFilter from the
> Insight Journal. However,
> I am having trouble to find the correct parameter in order to make the
> filter work.
> I'll have scattered 3-D points of several DVFs over time and I want to fit
> these DVFs by a 4-D Bspline. Afterwards I want to evaluate output DVF to
> one
> time step.
>
> Here you can find the code, unfortunately it crashes.
>
> Please help me...please.
>
> Thanks in advance.
>
> #include "itkBSplineScatteredDataPointSetToImageFilter.h"
> #include "itkPointSet.h"
> #include "itkImage.h"
> #include "itkVectorImage.h"
> #include "itkImageFileReader.h"
> #include "itkImageFileWriter.h"
>
> int main (int argc, char* argv[])
> {
>   const unsigned int ImageDimension = 3;
>
>   using VectorType = itk::Vector<float, ImageDimension>;
>   using InputImageType = itk::Image<VectorType, ImageDimension>;
>   using InputPointType = InputImageType::PointType;
>   using OutputImageType = itk::Image<VectorType, ImageDimension + 1>;
>   using PointSetType = itk::PointSet<VectorType, ImageDimension + 1>;
>   using OutputPointType = PointSetType::PointType;
>   using ReaderType = itk::ImageFileReader<InputImageType>;
>   using WriterType = itk::ImageFileWriter<OutputImageType>;
>
>   PointSetType::Pointer pointSet = PointSetType::New();
>   unsigned long pointId = 0;
>   InputImageType::PointType origin;
>   InputImageType::SpacingType spacing;
>   InputImageType::SizeType size;
>   for (int i = 1; i < argc; ++i)
>   {
>     ReaderType::Pointer reader = ReaderType::New();
>     std::cout << "Reading file " << argv[i] << std::endl;
>     reader->SetFileName(argv[i]);
>     try
>     {
>       reader->Update();
>     }
>     catch (itk::ExceptionObject & err)
>     {
>       std::cout << "ExceptionObject caught !" << std::endl;
>       std::cout << err << std::endl;
>       return EXIT_FAILURE;
>     }
>     using IteratorType = itk::ImageRegionConstIterator<InputImageType>;
>     const InputImageType * image = reader->GetOutput();
>     IteratorType it(image, image->GetBufferedRegion());
>     it.GoToBegin();
>     InputPointType inPoint;
>     OutputPointType outPoint;
>     int iCount = 0;
>     while (!it.IsAtEnd())
>     {
>       inPoint = image->GetPixel(it.GetIndex());
>       for (int j = 0; j < ImageDimension; ++j)
>         outPoint[j] = inPoint[i];
>       outPoint[ImageDimension] = i - 1;
>       pointSet->SetPoint(pointId, outPoint);
>       // Transfer the pixel data to the value associated with the point.
>       pointSet->SetPointData(pointId, it.Get());
>       ++it;
>       ++pointId;
>       ++iCount;
>     }
>     std::cout << "Number of points in " << argv[i] << " = " << iCount <<
> std::endl;
>     std::cout << "Total number of points = " <<
> pointSet->GetNumberOfPoints() << std::endl;
>     origin = image->GetOrigin();
>     spacing = image->GetSpacing();
>     size = image->GetLargestPossibleRegion().GetSize();
>   }
>
>   typedef itk::BSplineScatteredDataPointSetToImageFilter < PointSetType,
> OutputImageType > SplineFilterType;
>   SplineFilterType::Pointer splineFilter = SplineFilterType::New();
>
>   int splineorder=3; // complexity of the spline
>
>   SplineFilterType::ArrayType ncontrol;
>   ncontrol[0]=splineorder + 1;
>   SplineFilterType::ArrayType closedim;
>   closedim[0]= 0;
>
>   OutputImageType::PointType parametricDomainOrigin;
>   OutputImageType::SpacingType parametricDomainSpacing;
>   OutputImageType::SizeType parametricDomainSize;
>   for (int i = 0; i < ImageDimension; ++i)
>   {
>     parametricDomainOrigin[i] = origin[i];
>     parametricDomainSpacing[i] = spacing[i];
>     parametricDomainSize[i] = size[i];
>   }
>   parametricDomainOrigin[ImageDimension] = 0;
>   parametricDomainSize[ImageDimension] = argc - 2;
>   parametricDomainSpacing[ImageDimension] = 10.0;
>
>   splineFilter->SetGenerateOutputImage( true );   // the only reason to
> turn
> this off is if one only wants to use the control point lattice for further
> processing
>   splineFilter->SetInput ( pointSet );
>   splineFilter->SetSplineOrder ( splineorder );
>   splineFilter->SetNumberOfControlPoints ( ncontrol );
>   splineFilter->SetNumberOfLevels( 3 );
>   splineFilter->SetCloseDimension ( closedim );
>   splineFilter->SetSize( parametricDomainSize );
>   splineFilter->SetSpacing( parametricDomainSpacing );
>   splineFilter->SetOrigin( parametricDomainOrigin );
>   std::cout << "Before update spline filter" << std::endl;
>   splineFilter->Update();
>   std::cout << "After update spline filter" << std::endl;
>
>   WriterType::Pointer writer = WriterType::New();
>   writer->SetInput(splineFilter->GetOutput());
>   writer->SetFileName("Output.mhd");
>   writer->Update();
>   std::cout << "After write image filter" << std::endl;
>
>   return EXIT_SUCCESS;
> };
>
>
>
> --
> Sent from: http://itk-users.7.n7.nabble.com/
> The ITK community is transitioning from this mailing list to
> discourse.itk.org. Please join us there!
> ________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> https://itk.org/mailman/listinfo/insight-users
>
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________________________________
Powered by www.kitware.com

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Please keep messages on-topic and check the ITK FAQ at:
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Follow this link to subscribe/unsubscribe:
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From vrnova at gmail.com  Thu Oct  4 09:33:33 2018
From: vrnova at gmail.com (Yanling Liu)
Date: Thu, 4 Oct 2018 09:33:33 -0400
Subject: [ITK] [ITK-users] Imaging analysis PostDoc position (NCI/FNLCR)
Message-ID: <CACNiyLCMPAuO+x0ocWPWtn5Pf_Pfa_P5YHzRnD6L-w1Qhpu1tw@mail.gmail.com>

Dear ITK users,

The Advanced Biomedical and Computational Science group at the NCI
Frederick National Laboratory for Cancer Research (FNLCR) seeks a post doc
fellow with image analysis background to work on tissue toxicity study from
radiation treatment. The post doc will support the collaboration between
FNLCR and University of Maryland School of Medicine.

To apply:
https://careers.leidos.com/jobs/3071866-postdoctoral-fellow-nci/apply

Thank you
Yanling
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________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
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Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From avw0731 at gmail.com  Wed Oct 10 19:46:02 2018
From: avw0731 at gmail.com (Ally Warner)
Date: Wed, 10 Oct 2018 17:46:02 -0600
Subject: [ITK] Compile errors using ITK 4.13.1
Message-ID: <2A3C9032-508B-4D6E-8D8E-BCC00EC51F3F@sci.utah.edu>

Hello,

I am a developer at the University of Utah and we use ITK for our software, Seg3D. Seg3D recently had a 404 error from the FFTW download because midas has been deprecated. To fix that, I am trying to upgrade our ITK version from 4.13.0 to 4.13.1. When I merged 4.13.1 and tried to build Seg3D, I received the following error: 

ATTENTION: You have enabled the use of FFTW. This library is distributed under a GPL license. By enabling this option, the ITK libraries binary that is built will be covered by a GPL license and so will any executable that is linked against these libraries.
CMake Error at /Applications/CMake.app/Contents/share/cmake-3.4/Modules/ExternalProject.cmake:1825 (message):
  URL_HASH is set to

    SHA512="1ee2c7bec3657f6846e63c6dfa71410563830d2b951966bf0123bd8f4f2f5d6b50f13b76d9a7b0eae70e44856f829ca6ceb3d080bb01649d1572c9f3f68e8eb1"

  but must be ALGO=value where ALGO is

    MD5|SHA1|SHA224|SHA256|SHA384|SHA512

  and value is a hex string.
Call Stack (most recent call first):
  /Applications/CMake.app/Contents/share/cmake-3.4/Modules/ExternalProject.cmake:2430 (_ep_add_download_command)
  CMake/itkExternal_FFTW.cmake:90 (ExternalProject_add)
  CMakeLists.txt:321 (include)


-- Configuring incomplete, errors occurred!
See also "/Users/alexandrawarner/Documents/Seg3D/bin/Externals/Build/ITK_external/CMakeFiles/CMakeOutput.log".
See also "/Users/alexandrawarner/Documents/Seg3D/bin/Externals/Build/ITK_external/CMakeFiles/CMakeError.log".
make[2]: *** [Externals/Stamp/ITK_external/ITK_external-configure] Error 1
make[1]: *** [CMakeFiles/ITK_external.dir/all] Error 2
make: *** [all] Error 2

After looking through ITK?s code changes, I noticed that in the itkExternal_FFTW.cmake file there were parentheses after the $ for the URL and the URL_HASH commands. There weren?t these parentheses in other files around these same commands. So I removed them and rebuilt. Then I received the following error: 

CMake Error at fftwd-stamp/download-fftwd.cmake:27 (message):
  error: downloading
  'https://data.kitware.com/api/v1/file/hashsum/sha512/1ee2c7bec3657f6846e63c6dfa71410563830d2b951966bf0123bd8f4f2f5d6b50f13b76d9a7b0eae70e44856f829ca6ceb3d080bb01649d1572c9f3f68e8eb1/download' <https://data.kitware.com/api/v1/file/hashsum/sha512/1ee2c7bec3657f6846e63c6dfa71410563830d2b951966bf0123bd8f4f2f5d6b50f13b76d9a7b0eae70e44856f829ca6ceb3d080bb01649d1572c9f3f68e8eb1/download'>
  failed

    status_code: 35
    status_string: "SSL connect error"
    log:   Trying 50.58.123.189...

  Connected to data.kitware.com <http://data.kitware.com/> (50.58.123.189) port 443 (#0)

  Server aborted the SSL handshake

  Closing connection 0

  



make[5]: *** [fftwd/src/fftwd-stamp/fftwd-download] Error 1
make[4]: *** [CMakeFiles/fftwd.dir/all] Error 2
make[4]: *** Waiting for unfinished jobs....
Updating '.':
CMake Error at fftwf-stamp/download-fftwf.cmake:27 (message):
  error: downloading
  'https://data.kitware.com/api/v1/file/hashsum/sha512/1ee2c7bec3657f6846e63c6dfa71410563830d2b951966bf0123bd8f4f2f5d6b50f13b76d9a7b0eae70e44856f829ca6ceb3d080bb01649d1572c9f3f68e8eb1/download' <https://data.kitware.com/api/v1/file/hashsum/sha512/1ee2c7bec3657f6846e63c6dfa71410563830d2b951966bf0123bd8f4f2f5d6b50f13b76d9a7b0eae70e44856f829ca6ceb3d080bb01649d1572c9f3f68e8eb1/download'>
  failed

    status_code: 35
    status_string: "SSL connect error"
    log:   Trying 50.58.123.189...

  Connected to data.kitware.com <http://data.kitware.com/> (50.58.123.189) port 443 (#0)

  Server aborted the SSL handshake

  Closing connection 0

  



make[5]: *** [fftwf/src/fftwf-stamp/fftwf-download] Error 1
make[4]: *** [CMakeFiles/fftwf.dir/all] Error 2
make[3]: *** [all] Error 2
make[2]: *** [Externals/Stamp/ITK_external/ITK_external-build] Error 2
make[1]: *** [CMakeFiles/ITK_external.dir/all] Error 2

I am not sure what to do now, and was hoping for some guidance. I?m thinking that the server might be down, but wanted to be sure that there wasn?t something else I was missing. 

Thank you for your help,
Ally Warner
SCI Institute


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From dzenanz at gmail.com  Thu Oct 11 11:35:26 2018
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Thu, 11 Oct 2018 11:35:26 -0400
Subject: [ITK] Compile errors using ITK 4.13.1
In-Reply-To: <2A3C9032-508B-4D6E-8D8E-BCC00EC51F3F@sci.utah.edu>
References: <2A3C9032-508B-4D6E-8D8E-BCC00EC51F3F@sci.utah.edu>
Message-ID: <CAPf2UMTtTTJjJ+sEByPz62gX-fRoLOWcS1uATrqiKJGQodhUfw@mail.gmail.com>

Hi Ally,

the thing about parentheses might be a bug. Please report it on the issue
tracker <https://github.com/InsightSoftwareConsortium/ITK/issues>, or even
better submit a patch <https://itk.org/Wiki/ITK/Git/Develop> which fixes it.

The second problem you are having might be that your CMake was not built
with SSL support. Or that data.kitware.com server was not working properly
at that time.

Either way, please continue this discussion on the forum
<https://discourse.itk.org/> as we have migrated away from this mailing
list.

Regards,
D?enan

On Wed, Oct 10, 2018 at 7:46 PM Ally Warner <avw0731 at gmail.com> wrote:

> Hello,
>
> I am a developer at the University of Utah and we use ITK for our
> software, Seg3D. Seg3D recently had a 404 error from the FFTW download
> because midas has been deprecated. To fix that, I am trying to upgrade our
> ITK version from 4.13.0 to 4.13.1. When I merged 4.13.1 and tried to build
> Seg3D, I received the following error:
>
> ATTENTION: You have enabled the use of FFTW. This library is distributed
> under a GPL license. By enabling this option, the ITK libraries binary that
> is built will be covered by a GPL license and so will any executable that
> is linked against these libraries.
> CMake Error at
> /Applications/CMake.app/Contents/share/cmake-3.4/Modules/ExternalProject.cmake:1825
> (message):
>   URL_HASH is set to
>
>
> SHA512="1ee2c7bec3657f6846e63c6dfa71410563830d2b951966bf0123bd8f4f2f5d6b50f13b76d9a7b0eae70e44856f829ca6ceb3d080bb01649d1572c9f3f68e8eb1"
>
>   but must be ALGO=value where ALGO is
>
>     MD5|SHA1|SHA224|SHA256|SHA384|SHA512
>
>   and value is a hex string.
> Call Stack (most recent call first):
>
> /Applications/CMake.app/Contents/share/cmake-3.4/Modules/ExternalProject.cmake:2430
> (_ep_add_download_command)
>   CMake/itkExternal_FFTW.cmake:90 (ExternalProject_add)
>   CMakeLists.txt:321 (include)
>
>
> -- Configuring incomplete, errors occurred!
> See also
> "/Users/alexandrawarner/Documents/Seg3D/bin/Externals/Build/ITK_external/CMakeFiles/CMakeOutput.log".
> See also
> "/Users/alexandrawarner/Documents/Seg3D/bin/Externals/Build/ITK_external/CMakeFiles/CMakeError.log".
> make[2]: *** [Externals/Stamp/ITK_external/ITK_external-configure] Error 1
> make[1]: *** [CMakeFiles/ITK_external.dir/all] Error 2
> make: *** [all] Error 2
>
> After looking through ITK?s code changes, I noticed that in the
> itkExternal_FFTW.cmake file there were parentheses after the $ for the URL
> and the URL_HASH commands. There weren?t these parentheses in other files
> around these same commands. So I removed them and rebuilt. Then I received
> the following error:
>
> CMake Error at fftwd-stamp/download-fftwd.cmake:27 (message):
>   error: downloading
>   '
> https://data.kitware.com/api/v1/file/hashsum/sha512/1ee2c7bec3657f6846e63c6dfa71410563830d2b951966bf0123bd8f4f2f5d6b50f13b76d9a7b0eae70e44856f829ca6ceb3d080bb01649d1572c9f3f68e8eb1/download'
>   failed
>
>     status_code: 35
>     status_string: "SSL connect error"
>     log:   Trying 50.58.123.189...
>
>   Connected to data.kitware.com (50.58.123.189) port 443 (#0)
>
>   Server aborted the SSL handshake
>
>   Closing connection 0
>
>
>
>
>
> make[5]: *** [fftwd/src/fftwd-stamp/fftwd-download] Error 1
> make[4]: *** [CMakeFiles/fftwd.dir/all] Error 2
> make[4]: *** Waiting for unfinished jobs....
> Updating '.':
> CMake Error at fftwf-stamp/download-fftwf.cmake:27 (message):
>   error: downloading
>   '
> https://data.kitware.com/api/v1/file/hashsum/sha512/1ee2c7bec3657f6846e63c6dfa71410563830d2b951966bf0123bd8f4f2f5d6b50f13b76d9a7b0eae70e44856f829ca6ceb3d080bb01649d1572c9f3f68e8eb1/download'
>   failed
>
>     status_code: 35
>     status_string: "SSL connect error"
>     log:   Trying 50.58.123.189...
>
>   Connected to data.kitware.com (50.58.123.189) port 443 (#0)
>
>   Server aborted the SSL handshake
>
>   Closing connection 0
>
>
>
>
>
> make[5]: *** [fftwf/src/fftwf-stamp/fftwf-download] Error 1
> make[4]: *** [CMakeFiles/fftwf.dir/all] Error 2
> make[3]: *** [all] Error 2
> make[2]: *** [Externals/Stamp/ITK_external/ITK_external-build] Error 2
> make[1]: *** [CMakeFiles/ITK_external.dir/all] Error 2
>
> I am not sure what to do now, and was hoping for some guidance. I?m
> thinking that the server might be down, but wanted to be sure that there
> wasn?t something else I was missing.
>
> Thank you for your help,
> Ally Warner
> SCI Institute
>
>
> The ITK community is transitioning from this mailing list to
> discourse.itk.org. Please join us there!
> ________________________________________
> Community mailing list
> Community at itk.org
> https://itk.org/mailman/listinfo/community
>
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From kris.f.thielemans at gmail.com  Sun Oct 14 15:10:45 2018
From: kris.f.thielemans at gmail.com (Kris Thielemans)
Date: Sun, 14 Oct 2018 20:10:45 +0100
Subject: [ITK] get info such as patient orientation, timing from images
Message-ID: <006d01d463f1$9c65c350$d53149f0$@gmail.com>

Hi all

 

Is there a way to get patient orientation (i.e., HFS etc) and things like
the equivalent of DICOM's Actual Frame Duration etc from ITK image objects?

 

I suspect this sits in the MetaData, but that'd imply I'd have to know how
to get it for every file format that supports this info (although most
formats don't I guess).

 

If this cannot be done, can someone point me to an example how to get it for
a DICOM image (or even tell me about another ITK-supported file format that
does encode this info)?

 

Thanks!

 

Kris

 

 

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From lasso at queensu.ca  Sun Oct 14 16:17:21 2018
From: lasso at queensu.ca (Andras Lasso)
Date: Sun, 14 Oct 2018 20:17:21 +0000
Subject: [ITK] get info such as patient orientation, timing from images
In-Reply-To: <006d01d463f1$9c65c350$d53149f0$@gmail.com>
References: <006d01d463f1$9c65c350$d53149f0$@gmail.com>
Message-ID: <6f74d888-1b32-4c90-bfe3-c046f7753dc2@queensu.ca>

Hi Kris,

ITK mailing list has moved to https://discourse.itk.org. Would you mind posting your question there?

Andras
________________________________
From: Kris Thielemans <kris.f.thielemans at gmail.com>
Sent: Sunday, October 14, 2018 3:10 PM
To: community at itk.org
Subject: [ITK] get info such as patient orientation, timing from images

Hi all

Is there a way to get patient orientation (i.e., HFS etc) and things like the equivalent of DICOM?s Actual Frame Duration etc from ITK image objects?

I suspect this sits in the MetaData, but that?d imply I?d have to know how to get it for every file format that supports this info (although most formats don?t I guess).

If this cannot be done, can someone point me to an example how to get it for a DICOM image (or even tell me about another ITK-supported file format that does encode this info)?

Thanks!

Kris


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From julien.finet at kitware.com  Mon Oct 29 11:31:01 2018
From: julien.finet at kitware.com (Julien Finet)
Date: Mon, 29 Oct 2018 16:31:01 +0100
Subject: [ITK] ANN: ITK Training Course in Lyon, France - March 21st
Message-ID: <CAKoWPPE4k1SXjkgnCBArCw37r+5BRVAE4FcwpCuZ9oacspd7Tg@mail.gmail.com>

Dear all,

Kitware will be holding a developers training course on March 26th 2019 in
Lyon, France. This course will cover features of ITK :
- Overview/Architecture
- Segmentation
- Registration
- Using ITK in your applications

Please visit our web site for more information, trainings (VTK, CMake,
Slicer, OpenCV...) and registration details at :

*https://training.kitware.fr/browse/208
<https://training.kitware.fr/browse/208>*

Note that the course will be taught in English. If you have any questions,
please contact us at courses[at]kitware.com or formations[at]kitware.fr.

Best regards,
Julien.
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