[ITK] [ITK-users] Big tiff file

[Gib Bogle]

I just installed ITK-SNAP.  Unfortunately it doesn't even recognise the format of an ITK-created TIFF file smaller than 2GB :(.   This is a file that Irfanview can read (of course, only displaying it slice-by-slice.)  Maybe ITK-SNAP doesn't like 3D TIFFs.
...
The problem is more fundamental, it appears.  ITK-SNAP can't recognise the format of one of my 2D TIFFs either.  In fact, TIFF does not appear in the list of supported file formats.
Back to the drawing board.
________________________________________
From: Matt McCormick <matt.mccormick at kitware.com>
Sent: Sunday, 22 October 2017 4:48 a.m.
To: Dženan Zukić
Cc: Gib Bogle; Insight-users
Subject: Re: [ITK-users] Big tiff file

Hi,

Since ITKv4, support for "BigTiff" was added, so ITK can support TIFF
files larger than 4GB.

One possible limitation may be the filesystem -- avoid FAT32 formatted
filesystem that will run into size limits.

The file could be viewed with a number of ITK-supported viewers, e.g.

- 3D-Slicer: https://www.slicer.org/
- ITK-SNAP: http://www.itksnap.org/
- Tomviz: http://www.tomviz.org/

HTH,
Matt

On Sat, Oct 21, 2017 at 11:40 AM, Dženan Zukić <dzenanz at gmail.com> wrote:
> Hi Gib,
>
> TIFF is limited to 4GiB. Unless you must use TIFF, better switch to
> MetaImage or NRRD.
>
> Regards,
> Dženan
>
> On Sat, Oct 21, 2017 at 12:08 AM, Gib Bogle <g.bogle at auckland.ac.nz> wrote:
>>
>> Hi,
>>
>>
>> I am joining a stack of 2D tiffs into a 3D tiff, and have run into a
>> problem with big files.  When the uncompressed size of the 3D file is more
>> than 2GB I get an error when I try to view it with Irfanview.  At first I
>> thought maybe I needed to upgrade from ITK4.8.0, but after installing and
>> using ITK4.12.2 I see that I have the same issue.  Irfanview says:
>>
>> "Invalid or unsupported TIF file"
>>
>> I now suspect that the problem is not ITK-related, rather it is a
>> limitation of Irfanview.
>>
>> I have two questions:
>>
>>
>> Is there a limit on the allowed size of a tiff file?
>>
>> Is there another program (preferably free) that can open for viewing tiff
>> files bigger than 2GB?
>>
>>
>> It is useful but not essential for me to be able to view these big 3D
>> files.  I will use ITK functions to process the 3D files, and I'm assuming
>> that any file that ITK can create it can also read.
>>
>>
>> Thanks
>>
>> Gib
>>
>>
>> The ITK community is transitioning from this mailing list to
>> discourse.itk.org. Please join us there!
>> ________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-users
>>
>
>
> The ITK community is transitioning from this mailing list to
> discourse.itk.org. Please join us there!
> ________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
The ITK community is transitioning from this mailing list to discourse.itk.org. Please join us there!
________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users