[ITK] [ITK-users] watershed on surface meshs

[Richard Beare]

I don't recall an implementation of this anywhere. However you may be able
to hack something together reasonably quickly. Watersheds are built around
minimal paths, so depending on what complexity is available in the
mesh-based shortest path tools. In the worst cast you could create a copy
of the mesh for each seed region, compute the minimal distance to each non
seed vertex, then do a vertex-wise min, tracking which mesh/seed region has
the minimum, and that's your label. Not very efficient because you compute
the entire mesh distance each time, and no obvious way to do a watershed
line consistently, but perhaps that doesn't matter for testing the idea.

On Fri, Nov 24, 2017 at 10:26 PM, Grothausmann, Roman Dr. <
grothausmann.roman at mh-hannover.de> wrote:

> Dear mailing list members,
>
>
> I need to separate a mesh at "curved corners" (see attached PNG, using the
> colored labels from a facet analysis do not suffice but go in the right
> direction). So my current thought is to run vtkCurvature to get a Gaussian
> curvature value per point/vertex and then try to separate regions of
> positive values around local maxima. Just thresholding the result of
> vtkCurvature does not fully separate each local max from neighboring ones,
> but to my understanding a surface watershed would. I found two publications
> by Mangan and Whitaker on this:
>
> Partitioning 3D surface meshes using watershed:
> http://teacher.en.rmutt.ac.th/ktw/Resources/Full%20paper%20P
> DF/Partitioning%203D%20surface%20meshes%20using%20watershed%
> 20segmentation.pdf
>
> Surface Segmentation Using Morphological Watersheds:
> https://www.google.de/url?sa=t&rct=j&q=&esrc=s&source=web&cd
> =4&cad=rja&uact=8&ved=0ahUKEwjD0by1lafWAhVUGsAKHZ2MAbUQFgg_
> MAM&url=http%3A%2F%2Fciteseerx.ist.psu.edu%2Fviewdoc%
> 2Fdownload%3Fdoi%3D10.1.1.464.2788%26rep%3Drep1%26type%
> 3Dpdf&usg=AFQjCNGX-p9-ElQFcpsUyBRO0pCjBKCmNg
>
> Does anybody know about an implementation for this in VTK/ITK or another
> open-source library? If not, would it be possible to transfer the ITK
> watershed implementation for voxel data to mesh data, e.g. to crate a
> VTKmorphWatershedFilter?
>
> Thanks for any help or hints.
> Roman
>
>
> --
> Dr. Roman Grothausmann
>
> Tomographie und Digitale Bildverarbeitung
> Tomography and Digital Image Analysis
>
> Medizinische Hochschule Hannover
> Institut für Funktionelle und Angewandte Anatomie
> OE 4120, Carl-Neuberg-Str. 1, 30625 Hannover, Deutschland
>
> Tel. +49 511 532-2900
> grothausmann.roman at mh-hannover.de
> http://www.mh-hannover.de/anatomie.html
>
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