[ITK] [ITK-users] [ANN] ITK 4.12.0 has been released!
Francois Budin
francois.budin at kitware.com
Tue Jun 6 13:03:23 EDT 2017
The Insight Segmentation and Registration Toolkit (ITK), is an open-source,
cross-platform library for multidimensional image analysis. On behalf of
the Insight Toolkit community, we are proud to announce that ITK 4.12.0 has
been released!
Links to the Sourceforge.net tarballs can be found on the download page:
http://www.itk.org/ITK/resources/software.html
Outline
----------
1. Introduction
2. New Features
3. ITK Changelog
4. ITK Sphinx Examples Changelog
5. ITK Software Guide Changelog
Introduction
---------------
Developed by an international community, ITK collects best-of-breed
algorithms for registering, segmenting, analyzing, and quantifying
n-dimensional imaging data. The high-quality library facilitates
reproducible research, provides a software resource for teaching image
analysis, and offers a platform for commercial product development.
Here are a few selected highlights for this release:
- Strain remote module added to ITK. Strain quantifies local deformation of
a solid body. In medical imaging, it can be used to quantify growth or
atrophy of tissue.
- Better compilation support for Microsoft Visual Studio 2017, Clang 4, GCC7
- Filters moved out of Review: Morphological Watersheds, and Hessian-based
objectness.
- Performance improvements for some ITK filters: itkHistogram (increase
speed), itkImagePCAShapeModelEstimator (decrease memory usage).
The release also includes many improvements in ITK Python wrapping, such as
convenience functions to read and write images, better integration in the
Jupyter Notebook, new filters wrapped, and build support for the Microsoft
Visual C++ Compiler for Python 2.7. Other nice features have been added
such as improved palette true color support for PNG, TIFF, and BMP.
Congratulations to the 26 contributors to this release. We would especially
like to recognize the new contributors: Jared Vicory, Sam Horvath, Shusil
Dangi, Ben Boeckel, Yann Le Poul, Jean-Baptiste Vimort, and Samuel Gerber.
New Features
------------------
* Wrapping Improvements
- Enable BridgeNumPy by default with Python wrapping
- Build support for Microsoft Visual C++ Compiler for Python 2.7
- BridgeNumpy integrates new pairs of functions. GetArrayViewFromImage()
and GetImageViewFromArray() return views on the source object given as a
parameter to the function. Memory is shared among input and output objects
and the source object still manages pixel buffer memory. The existing
functions GetArrayFromImage() and GetImageFromArray() perform a deep copy
of the source object.
- Similar NumPy bridge functions have been created for VNL matrices and VNL
vectors.
- Convenience functions imread() and imwrite() have been added to the
Python itk namespace. These functions facilitate respectively reading and
writing images using ITK without having to specify the input or output
image component type. The naming of these functions follows the convention
used in several other Python project such as scikit-image and scipy.
- Better integration in Jupyter Notebook: addressed tab completion bug for
IPython >= 5.0.0, replaced underscore with ‘x’ to name attributes that
start with a digit to show attributes when trying to autocomplete in
IPython.
- Wrap itkN4BiasFieldCorrectionImageFilter, NormalVariateGenerator, and
PathToImageFilter.
- Allow calls to ImageFileWriter in Python with an ITK filter as input
image argument.
- Build Python wrapping with hidden visibility
* New Remote Modules
- Strain
- Filters to estimate a strain tensor field from a displacement field or a
spatial transformation
- http://hdl.handle.net/10380/3573
* Core Improvements
- Enable hidden visibility property with NIFTI and GIFTI static libraries
- Fix clearing build tree error
- Add examples and doc build flag support for external modules
- Support for recent Clang in FreeBSD
- Improved support for Visual Studio 2017
- Prefer std::atomic over compiler specific implementation
* Filtering Improvements
- Add OrientedBoudingBox attributes to ShapeLabelMap
- Skip generating export headers if module does not contain a target
- Introduce ITK_WRAP_PYTHON_LEGACY to exclude older Python package layout
- Move morphological watersheds out of ITKReview
- Add SetReferenceImage to GenerateImageSource
- Reduce memory usage of itkImagePCAShapeModelEstimator
- Improvement of itkHistogram in order to make it faster
- Better compatibility with OpenCVImageBridge
* IO Improvements
- Improvement of palette image support for PNG, TIFF and BMP
* Documentation Improvements
- Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
* Remote Module Updates
- BridgeNumPy updated to latest upstream (04.28.2017)
* Third Party Library Updates
- Update SWIG version to 3.0.12
- Update PCRE version to 8.40
- MetaIO updated to latest upstream (04.08.2017)
- KWSys updated to latest upstream (04.20.2017)
- KWIML updated to latest upstream (02.27.2017)
- VNL updated to latest upstream (02.01.2017)
* Improved Code Coverage -- we are at 85.7%
- Jon Haitz-Legarreta's extensive code coverage improvements
* *Lots* of important bug fixes
* And much more! See details in the log below.
Changes from v4.12rc03 to v4.12.0
---------------------------------
Bradley Lowekamp (1):
COMP: Inform Doxygen of ITK_FORCE_EXPORT_MACRO
Francois Budin (2):
BUG: Remove weak symbol warnings on MacOS in VNL template classes
BUG: Replace class forward declaration attributes with
ITK_FORWARD_EXPORT
Hans Johnson (2):
COMP: Remove unused boiler plate constants
COMP: Incorrect scope resolution for typename
Jared Vicory (1):
BUG: Fix LBFGS crash when minimum is starting point.
Matthew McCormick (6):
COMP: Use ITK_TEMPLATE_EXPORT in explicit export forward declarations
COMP: Suppress global weak symbol warnings for std::vector
COMP: Linux explicitly instantiated build errors
BUG: ITKIONIFTI DEPENDS on ITKNIFTI
BUG: Remove duplicate VectorContainer integer wrapping
BUG: Remove duplicate ImageSource Covariant Vector wrapping
Vladimir S. FONOV (1):
MINC 2017-05-28 (002d510c)
Changes from v4.12rc02 to v4.12rc03
-----------------------------------
Bradley Lowekamp (4):
BUG: include HDF5 config in ITK config
BUG: Add fixed seed to registration tests
ENH: Use scikit-ci-addons for CiricleCI CMake installation and junit
BUG: Initialized the sampling seed for v3 registration test
Francois Budin (1):
ENH: Remove 'weak symbol' warning on MacOS
Matthew McCormick (5):
BUG: itk.ctype does not understand ints without signed
BUG: Rename WrapITKBuildOptionsPython.py to itkBuildOptions.py
DOC: Remove Doxygen note about GDCM version
BUG: Bump Bridge NumPy to address Windows long sizes
COMP: Suppress macOS std::string linker visibility warnings
Vladimir S. FONOV (1):
MINC 2017-05-19 (f6853a70)
Changes from v4.12rc01 to v4.12rc02
-----------------------------------
Christina Rossmanith (1):
BUG: calculate levelSetValue for IsoContourFilter with float precision
David T. Chen (1):
DOC: Fix Pysical Typo
Francois Budin (3):
BUG: Remove doxygen warnings 'Found unknown command \epsilon'
ENH: Remove warning messages in GCC 5.1 due to ITK_TEMPLATE_EXPORT
BUG: GCC 5.1 warnings 'type attributes ignored after type is already
defined'
Jon Haitz Legarreta Gorroño (1):
DOC: Add use note to itkGridForwardWarpImageFilter.
Matthew McCormick (1):
BUG: Update the Strain remote module to 2017-05-05
Vladimir S. FONOV (3):
MINC 2017-04-28 (3d79acf3)
MINC 2017-05-01 (4caf8f4c)
MINC 2017-05-05 (cc682b52)
Changes from v4.11.0 to v4.12rc01
---------------------------------
Ben Boeckel (1):
ENH: Add a script to help update third-party sources
Brad King (5):
ENH: Update KWIML import script for new upstream URL
ENH: Teach update-third-party.bash to add a Change-Id
ENH: Port KWSys update script to update-third-party.bash
ENH: KWSys: Filter out unused attributes during import
ENH: KWSys: Apply attribute changes made upstream
Bradley Lowekamp (19):
COMP: Enable hidden visibility property with NIFTI static libraries
COMP: Enable hidden visibility property with GIFTI static libraries
BUG: Correct variable name used to check CXX version
BUG: Correct variable name used to check CXX version
COMP: Enable hidden visibility property with NIFTI static libraries
COMP: Enable hidden visibility property with GIFTI static libraries
BUG: Initialize ConvergenceValue in constructor
BUG: Initialize ConvergenceValue in constructor
ENH: Update CircleCi script to download latest binary tar-ball
BUG: Use CMAKE_DL_LIBS instead of explict "dl" library
COMP: Fix CircleCI ITK data download file name
ENH: Update CircleCI yaml file
BUG: Apply changes from MetaIO upstream to remove static variables
ENH: Update SWIG version to 3.0.12
ENH: Update PCRE version to 8.40
ENH: Add OrientedBoudingBox attributes to ShapeLabelMap
COMP: Use std::abs over vnl_math_abs
BUG: Initialize image data to 0
ENH: Fix clearing build tree error
David T. Chen (1):
BUG: Fixed quote style
Dženan Zukić (3):
STYLE: Simplify code by using TestingMacros
BUG: fixing wrong check for argument count
ENH: Add Strain as a remote module
Floris Berendsen (2):
COMP: Added missing png_get_uint_31 name mangling
COMP: Added missing png_get_uint_31 name mangling
Francois Budin (58):
STYLE: Typo corrections in itk*TopHatImageFilter.h
ENH: Prefer std::atomic over compiler specific implementation
BUG: Addresses 'ordered comparison between pointer and zero' error
(clang-4)
BUG: Addresses InDoxygenGroup Test with Python 3.6 failures
BUG: BSplineScatteredDataPointSetToImageFilter output image is not
generated
BUG: itk::RGBPixel<unsigned short> needs to be wrapped for
itkTIFFImageIO
BUG: Usage of std::atomic was incorrectly used in
itk::Detail::AtomicOps
ENH: Exposing functions to set real and imaginary part of complex
numbers
BUG: ITK_OVERRIDE keyword for non-overriden funtion
BUG: 'typename' cannot be used outside of template declaration
BUG: Missing ITK_OVERRIDE
BUG: ITK_OVERRIDE keyword for non-overriden funtion
BUG: ITK_OVERRIDE keyword for non-overriden funtion
BUG: ITK_OVERRIDE keyword for non-overriden funtion
BUG: Missing ITK_OVERRIDE
ENH: Improving usability in IPython
ENH: Update BridgeNumPy to most recent version (2017.02.24)
BUG: 3523 Even padding most value representations with space instead
of '\0'
BUG: Remove extra space in chronometer command
DOC: Make it more explicit that 'push' authorization is not for
everybody
BUG: 3523 Even padding most value representations with space instead
of '\0'
BUG: 3519 KernelTransform WMatrix initialization
BUG: KWSys symbols should not be exported with
WINDOWS_EXPORT_ALL_SYMBOLS
COMP: Do not expose functions to set real and img part of complex
numbers
BUG: KWSys symbols should not be exported with
WINDOWS_EXPORT_ALL_SYMBOLS
BUG: 3519 KernelTransform WMatrix initialization
DOC: Typo in itkNumberToString.h
BUG: Attribute names cannot start with a digit
BUG: Do not define deprecated function if ITK_LEGACY_REMOVE is selected
BUG: Wrap EllipseSpatialObject std::list in Python
ENH: Wrap itkN4BiasFieldCorrectionImageFilter in Python
BUG: itkStatisticsAlgorithmTest throwing exception on VS2015Update3
and VS2017
ENH: Skip generating export headers if module does not contain a target
BUG: Wrapping of itkHessianToObjectnessMeasureImageFilter moved out of
Review
ENH: Update BridgeNumPy to most recent version (2017.03.27)
BUG: Wrapping of itkHessianToObjectnessMeasureImageFilter moved out of
Review
BUG: Wrap EllipseSpatialObject std::list in Python
ENH: Improving usability in IPython
BUG: Attribute names cannot start with a digit
BUG: Do not export GDCM and Expat symbols with
WINDOWS_EXPORT_ALL_SYMBOLS
BUG: Do not export all symbols from third party libraries on Windows
ENH: Allows to call ImageFileWriter in Python with Input=Filter
BUG: Certain third party libraries need to export their symbols on
Windows
BUG: Test if 'issubclass' only if 'isclass' is True
ENH: Add Python convenience function to read images
BUG: 3475 AccumulateImageFilter not setting direction cosines of
output image
DOC: Removing typos in itkExtractImageFilter comments
BUG: ProjectionImageFilter did not copy direction cosine information
to output
BUG: Test if 'issubclass' only if 'isclass' is True
BUG: 3475 AccumulateImageFilter not setting direction cosines of
output image
BUG: Do not export GDCM and Expat symbols with
WINDOWS_EXPORT_ALL_SYMBOLS
BUG: Do not export all symbols from third party libraries on Windows
BUG: Certain third party libraries need to export their symbols on
Windows
BUG: ProjectionImageFilter did not copy direction cosine information
to output
ENH: Update BridgeNumPy (2016.04.28) and update itkExtras.py
accordingly
BUG: Template type based input function parameter needs to be
deterministic
ENH: Bump CMakeLists.txt version to 4.11.1
BUG: Problems due to ComputeOrientedBoundingBox in
itkShapeLabelMapFilter
Jean-Baptiste VIMORT (1):
PERF: Improvement of the itkHistogram class in order to make it faster
Jean-Christophe Fillion-Robin (2):
ENH: Introduce ITK_WRAP_PYTHON_LEGACY to exclude older Python package
layout
BUG: ITKPython: Do not install *.mdx files required only at generation
time
Johan Andruejol (1):
ENH: Add wrapping for PathToImageFilter
Jon Haitz Legarreta (131):
ENH: Improve the itkFileListVideoIO coverage.
STYLE: Improve the BSplineScatteredDataPointSetToImageFilter style,
ENH: Improve the itkBSplineScatteredDataPointSetToImageFilter coverage.
ENH: Add missing ivars in function PrintSelf.
STYLE: Improve ImageNoise filters' style.
STYLE: Improve the ImageNoise filters tests' style.
STYLE: Improve ITKImageSources module filters' style.
STYLE: Improve the itkLinearInterpolateImageFunction style.
ENH: Improve the itkLabelOverlapMeasuresImageFilter coverage.
STYLE: Improve itkAdaptiveHistogramEqualizationImageFilter style.
ENH: Improve itkAdaptiveHistogramEqualizationImageFilter coverage.
STYLE: Improve itkKappaStatisticImageToImageMetric style.
ENH: Improve the itkKappaStatisticImageToImageMetric coverage.
STYLE: Improve itkBinaryGrindPeakImageFilter style.
STYLE: Improve the itkCannyEdgeDetectionImageFilter style.
ENH: Improve itkCannyEdgeDetectionImageFilter coverage.
ENH: Improve itkBarrier class coverage.
STYLE: Improve itkFlipImageFilterStyle.
STYLE: Improve itkSpatialObjectToPointSetFilter style.
STYLE: Improve itkStretchIntensityImageFilter style.
ENH: Print all ivars for itkStretchIntensityImageFilter.
ENH: Improve itkPhysicalPointImageSource class coverage.
ENH: Add missing ivars to LabelMapMaskImageFilter PrintSelf.
ENH: Improve itkRealTimeClock coverage.
STYLE: Improve the itkRealTimeClock style.
ENH: Improve itkBsplineDecompositionImageFilter coverage.
ENH: Improve itkTestingStretchIntensityImageFilter coverage.
STYLE: Improve itkPathToChainCodePathFilter style.
ENH: Add a Get method for itkPathToChainCodePathFilter ivar.
ENH: Add specific testing macro for boolean members.
STYLE: Improve itkLabelMapMaskImageFilter style.
STYLE: Improve BSplineDecompositionImageFilter style.
ENH: Finish itkAdaptiveHistogramEqualizationImageFilter PrintSelf.
COMP: Fix ImageGrid tests compiler warnings.
ENH: Finish BSplineDecompositionImageFilter PrintSelf.
BUG: Fix Uninitialized Memory errors reported by Valgrind.
ENH: Improve itkLabelMapMaskImageFilter coverage.
ENH: Improve itkBinaryGrindPeakImageFilter coverage.
ENH: Improve itkPathToChainCodePathFilter coverage.
ENH: Move LabelMap module test baselines.
ENH: Move BinaryMathMorphology test baselines out of review.
ENH: Move ImageFusion test baselines out of review.
ENH: Improve itkAutoCropLabelMapFilter tests.
ENH: Improve itkSpatialObjectToPointSetFilter coverage.
ENH: Move ImageLabel test baselines out of Review.
ENH: Move ImageGrid test baselines out of review.
STYLE: Improve itkGaussianSpatialFunction class' style.
ENH: Improve the ITKPath module classes coverage.
BUG: Fix BSplineDecompositionImageFilter Valgrind defects.
STYLE: Improve itkColorTable style.
ENH: Improve itkHoughTransform2DLinesImageFilter coverage.
ENH: Improve itkHoughTransform2DCirclesImageFilter coverage.
BUG: Address uninitialized variable defects.
STYLE: Improve itk::HistogramThresholdImageFilter style.
DOC: Fix a typo in the term "threshold".
STYLE: Imporve itkContourSpatialObjectPoint style.
ENH: Print all HoughTransform2DLinesImageFilter ivars.
STYLE: Fix type in Optimizersv4 and Metricsv4 modules.
ENH: Add PhiLattice regression baseline.
ENH: Print all itkVoronoiDiagram2DGenerator ivars.
ENH: Improve itkColorTable coverage.
ENH: Improve the itk::GradientDescentOptimizerv4 style.
ENH: Improve the itkImageSources module's filters' coverage.
ENH: Add PhiLattice regression baseline.
ENH: Add a new test for itk::ContourSpatialObjectPoint.
BUG: Fix bug in itkContourSpatialObjectPointTest test.
STYLE: Improve the itkGaussianSpatialFunctionTest style.
ENH: Improve itkVotingBinaryHoleFillingImageFilter coverage.
BUG: Fix precision issues in itkGaborKernelFunctionTest.
BUG: Relax tolerance in itkGaborKernelFunctionTest.
DOC: Fix minor typo in itkHistogramThresholdImageFilter doc.
ENH: Print all ivars in GradientDescentOptimizer base classes.
STYLE: Improve TIFFImageIO tests.
ENH: Add Get methods for itk::BSplineDecompositionImageFilter ivars.
BUG: Fix TimeProbes name in itkLargeTIFFImageWriteReadTest.
BUG: Fix memory leaks in BMP and PNG tests.
COMP: Fix signed/unsigned mismatch warning.
COMP: Fix signed/unsigned mismatch warning.
BUG: Fix Superclass for ITKThresholding calculators.
BUG: Make the number of filters be an integer.
ENH: Honor the itkBooleanMacro for boolean class members.
ENH: Improve the Watershed module code coverage.
COMP: Fix double to unsigned int cast warning.
ENH: Improve coverage for MorphologicalWatersheds filters.
STYLE: Improve the Denoising module style.
BUG: Fix the itkPatchBasedDenoisingImageFilter RTTI Superclass name.
COMP: Fix unsigned char from double conversion warning.
ENH: Improve itkWatershedMiniPipelineProgressCommand coverage.
ENH: Improve the itkRegionalMin/Max filters member print types.
ENH: Improve the itkMorphologicalWatershedFromMarkers coverage.
ENH: Improve the itkIsolatedWatershedImageFilter coverage.
STYLE: Improve the Denoisinig module style.
STYLE: Improve the FEMRegistration module files style.
DOC: Fix itkOrientImageFilter UseImageDirection method doc typo.
STYLE: Improve the ITKThresholding module classes style.
BUG: Fix itkIsolatedWatershedImageFilterTest valgrind errors.
STYLE: Improve the itkApproximateSignedDistanceMapImageFilter style.
ENH: Improve Denoising module filters' coverage.
ENH: Improve the FEMRegistration module coverage.
STYLE: Improve the itkDisplacementFieldTransform class style.
STYLE: Limit itkFlipImageFilter methods' loops variables' scope.
ENH: Improve itkFlipImageFilter coverage.
COMP: Fix itkPhysicsBasedNonRigidRegistrationMethodTest cast warning.
STYLE: Improve the HessianToObjectnessMeasureImageFilter style.
ENH: Improve coverage for HessianToObjectnessMeasureImageFilter.
ENH: Improve DiscreteGaussianImage operators review classes' coverage.
ENH: Add test for itk::ConicShellInteriorExteriorSpatialFunction.
ENH: Print all itkHoughTransform2DCirclesImageFilter ivars.
ENH: Improve coverage for itk::DisplacementFieldTransform.
STYLE: Make itkPatchBasedDenoisingBaseImageFilter ivars private.
STYLE: Improve the itkRobustAutomaticThreshold classes style.
COMP: Fix itkDisplacementFieldTransformTest compiler warning.
STYLE: Improve the itkGridForwardWarpImageFilter style.
ENH: Improve coverage for itkGridForwardWarpImageFilter.
ENH: Improve coverage for itkRobustAutomaticThreshold classes.
ENH: Remove duplicate test files in Review.
DOC: Fix itkDivideByConstantImageFilter doc error.
STYLE: Improve exception message.
STYLE: Improve ImageIntensity module image arithm op tests' style.
STYLE: Improve HConc/Conv HMaxima/HMinima image filters' style.
ENH: Improve the HConc/HConv HMaxima/HMinima filters' coverage.
ENH: Improve DiscreteGaussianImage operators review classes' coverage.
ENH: Change the URL for the PCA remote module repo.
STYLE: Make flow control variables have a local scope.
ENH: Add examples and doc build flag support for external modules.
DOC: Remove wrong group tag for itk::QuadEdgeMeshExtendedTraits.
BUG: Fix itk::FastMarchingImageFilter RTTI superclass name.
STYLE: Improve the itk::NodePair class style.
STYLE: Use the ITK_MANUAL_INSTANTIATION macro consistently.
STYLE: Delete FastMarching module classes methods consistently.
DOC: Fix typo in the "implementation" word across the code.
Jon Haitz Legarreta Gorroño (2):
STYLE: Improve itkWarpHarmonicEnergyCalculator style.
DOC: Add a notice to let users know about related implementations.
KWIML Upstream (1):
KWIML 2017-02-27 (aa3a7733)
KWSys Upstream (3):
KWSys 2016-11-21 (cb55cf5a)
KWSys 2017-03-28 (34999b6a)
KWSys 2017-04-20 (8785f84f)
Matthew McCormick (40):
COMP: Add missing headers in OpenCVImageBridge
COMP: Use double for gradient calculations in MinMaxCurvatureFlow
ENH: Bump ITK version to 4.12.0.
COMP: Add VCL support for GCC 7
COMP: Define ITK_FALLTHROUGH for GCC 7
COMP: Add missing ITK_FALLTHROUGH in TiffImageIO
COMP: Avoid -Warray-bounds in FixedArray with GCC 7
COMP: Add ProcessObject include in itkLevelSetBase.hxx
ENH: Exclude Kitware Robot from third party update commit messages
BUG: Address tab completion with IPython >= 5.0.0
BUG: Do not use terminal_progress with the Jupyter Notebook
ENH: Enable BridgeNumPy with Python wrapping
COMP: Do not require numeric_traits::has_infinity
BUG: Fix passing _NO_TR1 definition with VS9 and Python
BUG: Do not tests that require NumPy when it is not available
ENH: Build Python wrapping with hidden visibility
ENH: Move morphological watersheds out of ITKReview
BUG: Do not upload top level folder in ArchiveTestingDataOnGirder.py
BUG: Remove unused content links from PNG test additions
ENH: Add .sha512 content links for IO pallette test data
BUG: Add missing export macros for SpatialObject forward declarations
BUG: Always wrap basic type RGBUC
COMP: Do not add Visual Studio numeric_traits workarounds with MinGWPy
COMP: Increase gold linker requirement to GCC 4.9.0
COMP: Detect Windows with _WIN32 in socket++/fork.cpp
BUG: Revert "BUG: Include installed modules in ITK_MODULES_ENABLED"
BUG: Set ${itk-module}_ENABLE_SHARED in ITKModuleExternal
BUG: PolyLineParametricPath must be loaded before PathToImageFilter
COMP: Address Python 2.7 Windows _hypot build errors
COMP: Undefine Py_hash_t when wrapping VtkGlue
ENH: Update BridgeNumPy to most recent version (2017.03.05)
BUG: Improve itkTemplate New compatibility with Python 3
ENH: Bump CastXML to 2017-04-18
STYLE: Remove empty or erroreous comments in ImageToImageFilter
ENH: Use itk.imread and itk.imwrite as standard function names
BUG: Correct size specification in ImportImageFilter::SetImportPointer
BUG: Improve large file support in MetaIO
ENH: Wrap itk::IdentifierType for ScalarToRGBColormapImageFilter
BUG: LevelSetNeighborhoodExtractor uses spacing
BUG: Fix PCRE 8.40 download URL
MetaIO Maintainers (1):
MetaIO 2017-04-08 (dead6687)
Olivier Commowick (1):
BUG: Correct ITK eigen system (was producing NaN or different values
than VNL)
Pablo Hernandez-Cerdan (4):
ENH: Add SetReferenceImage to GenerateImageSource.
ENH: Change the metadata of all outputs in GenerateImageSource.
BUG: Fix Normalization kernel step of ConvolutionImageFilter.
BUG: Remove call to Superclass::GenerateOutputInformation.
Richard Beare (1):
DOC: PrincipleComponent flag incorrectly reported by PrintSelf
Sam Horvath (1):
PERF: reduce memory usage of itkImagePCAShapeModelEstimator
Samuel Gerber (2):
DOC: Added description to itkLBFGSOptimizerv4.h
DOC: LBFGSOptimizer doc update
Shusil Dangi (2):
ENH: Ignores MacOS .DS_Store file
ENH: Wrap NormalVariateGenerator in the Statistics Module
Simon Rit (2):
BUG: memory leak in ITK_USE_THREADPOOL
BUG: Join threads when using thread pool (ITK_USE_THREADPOOL)
Taylor Braun-Jones (1):
COMP: Only include the headers for required OpenCV modules (fixup)
VXL Maintainers (2):
VNL 2017-02-01 (ae6eff5e)
VNL 2017-02-08 (ae8eef13)
Yann Le Poul (4):
ENH: improvement of palette image support for PNG TIFF and BMP.
STYLE: Misleading IsReadAsScalarPlusPalette Printing string
STYLE: ReadAsScalarPlusPalette info already printed in itkImageIOBase
BUG: ExpandRGBPalette used instead of IsReadAsScalarPlusPalette
ITK Sphinx Examples Changes
-------------------------------------------
Beatriz Paniagua (1):
ENH: Add FlipImageFilter
Dženan Zukić (3):
BUG: fixing misspelled directory name
ENH: translating ImageReadExtractFilterInsertWrite into Python
ENH: updating TODO list with recent patches
Francois Budin (4):
BUG: Reducing Windows path length was not consistent
ENH: Import data into an ITK Image
BUG: Move FlipImageFilter from src/Core/Common to
src/Filtering/ImageGrid
Maeliss Jallais (1):
ENH: Add ReadWriteVectorImage
Matt McCormick (32):
BUG: Clean up ObserveAnEvent
ENH: Add .sha512 content links
ENH: Remove .md5 content links
ENH: Update ExternalData_URL_TEMPLATES for sha512 resources
ENH: Update the ITKExamples scripts to use the .sha512 content links
ENH: Update CMake/ExternalData.cmake
ENH: Remove Utilities/UploadBinaryData.py.in
ENH: Remove Utilities/ArchiveBinaryData.py.in
ENH: Remove pydas and related submodules
ENH: Bump ITK to 2017-03-06 master
ENH: Use GitHub for faster ITK repository downloads
DOC: Update UploadBinaryData.rst
DOC: Tweak content link usage with girder-cli
DOC: Remove ContributeWithWebInterface.rst
DOC: Swap WriteANewExample / ContributeWithGit order
ENH: Do not build the Python wrapping in the Superbuild
ENH: Enable ITKExamples_USE_WRAP_PYTHON by default
ENH: Create itkpython virtualenv on Mac and Linux
STYLE: Do not uses spaces after/before brackets in CMakeLists.txt
ENH: Add the superbuild itkpython binary folder to FindSphinx
BUG: CreateNewExample.py outputs template Code.py
ENH: Download itkpython in the Windows superbuild
DOC: Recommend cloning into a short directory on Windows
ENH: Reduce Windows superbuild path length requirements
BUG: Fix BoundingBoxOfAPointSetTestPython on Windows
ENH: Add example image filenames in template figure directive
ENH: Add Create An Image example
BUG: CreateAImageRegion -> CreateAnImageRegion
BUG: Fix CreateAnImageRegion output regex matching
STYLE: Address spacing in CreateAnImage
BUG: Update the Python package URL, nightly to latest
DOC: How to run a Python example
Max Smolens (5):
BUG: Fix errors in generated Code.py
ENH: Remove CannyEdgeDetectionImageFilter TODO items
ENH: Add itk.RGBToLuminanceImageFilter Python example
DOC: Fix typo in contribution documentation
ENH: Add WarpImageFilter example
Neal Siekierski (1):
ENH: Add example of itk::Statistics::Histogram creation and access
Sam Horvath (2):
ENH: Add CreateAnImageOfVectors
ENH: Add BlurringAnImageUsingABinomialKernel
ITK Software Guide Changes
----------------------------------------
Jon Haitz Legarreta (1):
DOC: Add testing section to SW guide.
Matt McCormick (6):
DOC: Document itk_module_add_library
DOC: Modules without a src/ directory should not set ENABLE_SHARED
Merge "DOC: Add testing section to SW guide."
DOC: Update the Kitware BrainWeb data link
BUG: Escape hash in Girder URL
DOC: Add Python package installation instructions
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