[ITK] itk::InvalidRequestedRegionError: Requested region is (at least partially) outside the largest possible region

Sat Oct 8 15:48:26 EDT 2016

Hi Le,

the first paragraph of the readme says:
*This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY. If you find any bug, please contact Aurelien Lucchi
<aurelien.lucchi at gmail.com <aurelien.lucchi at gmail.com>> or Kevin Smith
<kevin.smith at epfl.ch <kevin.smith at epfl.ch>>.*
Have you done so?

I tried building the mentioned library, after commenting out the hard-coded
paths in CMakeLists, I could still not build it. Errors are unrelated to
ITK, e.g.:
2>c:\misc\rays3d\Display.h(23): fatal error C1083: Cannot open include
file: 'GL/glut.h': No such file or directory
2>C:\Misc\rays3d\rays3d_utils.cpp(20): fatal error C1083: Cannot open
include file: 'dirent.h': No such file or directory
(I have given a path to GLUT and OpenCV).

Can you create a minimum working example <http://sscce.org/>? Attached are
my modifications to the CMakeListst.txt.

Regards,
Dženan

On Sat, Oct 8, 2016 at 4:36 AM, Le Sun <sunle2009 at gmail.com> wrote:

> Hi,
>
> I am running the code of 'Segmentation code for the 3D ray features
> described in our <http://people.inf.ethz.ch/alucchi/code/rays3d.zip>' on
> page http://people.inf.ethz.ch/alucchi/code.php.
>
> When run the first example in the readme.txt in the code
> package:test3dRays /home/le/Documents/rays3d/data/sphere 1 2 8 16
>
> I got the following error:
> *******************************************************
> Error while running this filter.
> itk::InvalidRequestedRegionError (0x2e7ebc0)
> Location: "void itk::NeighborhoodOperatorImageFilter<TInputImage,
> TOutputImage, TOperatorValueType>::GenerateInputRequestedRegion() [with
> TInputImage = itk::Image<float, 3u>; TOutputImage = itk::Image<float, 3u>;
> TOperatorValueType = double]"
> File: /usr/local/include/ITK-4.10/itkNeighborhoodOperatorImageFilter.hxx
> Line: 72
> Description: Requested region is (at least partially) outside the largest
> possible region.
> *******************************************************
>
> I added ' -> UpdateLargestPossibleRegion()' for each Filter in the .cpp
> and .cxx files. However, couldn't solve this problem.
>
> Thank you for your help.
>
> Best Regards
> Le
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
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#######################################################################
# This program is free software; you can redistribute it and/or       #
# modify it under the terms of the GNU General Public License         #
# version 2 as published by the Free Software Foundation.             #
#                                                                     #
# This program is distributed in the hope that it will be useful, but #
# WITHOUT ANY WARRANTY; without even the implied warranty of          #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU   #
# General Public License for more details.                            #
#                                                                     #
# Written and (C) by Aurelien Lucchi and Kevin Smith                  #
# Contact aurelien.lucchi (at) gmail.com or kevin.smith (at) epfl.ch  # 
# for comments & bug reports                                          #
#######################################################################

cmake_minimum_required(VERSION 2.4)

PROJECT(rays3d)
INCLUDE_REGULAR_EXPRESSION("^.*$")

# set(CMAKE_C_COMPILER "g++")
# set(CMAKE_CXX_COMPILER "g++")

# SET(CMAKE_BUILD_TYPE Release)
#SET(CMAKE_BUILD_TYPE Debug)

set(CMAKE_MODULE_PATH "modules")

option(USE_OPENGL "use OPENGL library" off)
mark_as_advanced(USE_OPENGL)

# set(CMAKE_CXX_FLAGS_DEBUG   "${CMAKE_CXX_FLAGS} -g -pg")
# set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS} -O3")

# set(CMAKE_C_FLAGS         ${CMAKE_CXX_FLAGS})
# set(CMAKE_C_FLAGS_DEBUG   ${CMAKE_CXX_FLAGS_DEBUG})
# set(CMAKE_C_FLAGS_RELEASE ${CMAKE_CXX_FLAGS_RELEASE})

###################################################################### PACKAGES

#SET(OpenCV_FIND_COMPONENTS   CV CXCORE CVAUX HIGHGUI ML)
SET(OpenCV_FIND_REQUIRED_COMPONENTS   CV CXCORE CVAUX HIGHGUI ML)
# set(OpenCV_DIR ~/src/ThirdParty/OpenCV-2.4.2/)
FIND_PACKAGE(OpenCV REQUIRED)
# add include directories
include_directories(${OPENCV_INCLUDE_DIR})
include_directories(${OpenCV_DIR}/include/)
include_directories(${OpenCV_DIR}/include/opencv/)

#find_library(ML_LIBRARY NAMES opencv_ml PATHS ${OpenCV_DIR}/lib/)
#find_library(ML_LIBRARY NAMES ml PATHS ${OpenCV_DIR}/lib/)
#SET(OpenCV_LIBS ${OpenCV_LIBS} ${ML_LIBRARY})
message("OpenCV")
message(STATUS ${OpenCV_LIBS})
message(STATUS ${OpenCV_LIBRARIES})
SET(OpenCV_LIBS ${OpenCV_LIBRARIES})

# include_directories(~/src/ThirdParty/OpenCV-2.0.0/include/opencv/)
# set(OpenCV_ROOT_DIR  ~/src/ThirdParty/OpenCV-2.0.0/lib/)
# find_library(OpenCV_CV_LIBRARY   
#   NAMES cv opencv
#   PATHS ${OpenCV_ROOT_DIR})
# find_library(OpenCV_CVAUX_LIBRARY
#   NAMES cvaux
#   PATHS ${OpenCV_ROOT_DIR})
# find_library(OpenCV_CXCORE_LIBRARY  
#   NAMES cxcore
#   PATHS ${OpenCV_ROOT_DIR})
# find_library(OpenCV_HIGHGUI_LIBRARY  
#   NAMES highgui
#   PATHS ${OpenCV_ROOT_DIR})
# find_library(OpenCV_ML_LIBRARY  
#   NAMES ml
#   PATHS ${OpenCV_ROOT_DIR})
# SET(OPENCV_LIBRARIES ${OpenCV_CV_LIBRARY} ${OpenCV_CVAUX_LIBRARY} ${OpenCV_CXCORE_LIBRARY} ${OpenCV_HIGHGUI_LIBRARY} ${OpenCV_ML_LIBRARY})

if(USE_OPENGL)

#CHECK OPENGL  DEPENDENCY
FIND_PACKAGE(OpenGL REQUIRED)
IF (OPENGL_FOUND) 
   MESSAGE(STATUS  "OpenGL Found")
ELSE (OPENGL_FOUND) 
   MESSAGE(FATAL_ERROR "OpenGL Not Found (required to compile modules)")
   SET(BUILD_MODULE FALSE)
ENDIF (OPENGL_FOUND) 

#CHECK GLUT  DEPENDENCY
FIND_PACKAGE(GLUT REQUIRED)
IF (GLUT_FOUND) 
   MESSAGE(STATUS  "GLUT Found")
ELSE (GLUT_FOUND) 
   MESSAGE(FATAL_ERROR  "GLUT Not Found (required to compile modules)")
   SET(BUILD_MODULE FALSE)
ENDIF (GLUT_FOUND) 

#include_directories(${GLEW_INCLUDE_DIR}/lib/misc/include)
find_package(GLEW REQUIRED)
IF (GLEW_FOUND)
   include_directories(${GLEW_INCLUDE_DIR})
ELSE (GLEW_FOUND) 
   MESSAGE(FATAL_ERROR  "GLEW Not Found (required to compile modules)")
   SET(BUILD_MODULE FALSE)
   #include_directories(${GLEW_INCLUDE_DIR}/lib/misc/include)
ENDIF (GLEW_FOUND)

endif(USE_OPENGL)

# set(ITK_DIR "/home/lucchi/src/ThirdParty/InsightToolkit-3.20.1/build")
message(${ITK_DIR})

find_package(ITK REQUIRED)
IF(ITK_FOUND)
  INCLUDE(${ITK_USE_FILE})
ENDIF(ITK_FOUND)

###################################################################### EXECUTABLE

ADD_EXECUTABLE(test3dRays
combnk.cpp
pca.cpp
rays3d.cpp
test_rays3d.cpp
rays3d_utils.cpp
rays3dVolume.cpp
Display.cpp
)

TARGET_LINK_LIBRARIES(test3dRays ${ITK_LIBRARIES} ${OPENCV_LIBRARIES})
if(USE_OPENGL) # additional libraries
TARGET_LINK_LIBRARIES(test3dRays ${OPENGL_LIBRARIES} ${GLUT_LIBRARIES} ${GLEW_LIBRARY})
endif(USE_OPENGL)

# SET_TARGET_PROPERTIES(test3dRays PROPERTIES COMPILE_FLAGS -fPIC)

#set(CMAKE_CXX_FLAGS_SAVED  ${CMAKE_CXX_FLAGS})
set(CMAKE_CXX_FLAGS  "${CMAKE_CXX_FLAGS} -D RAYS_MULTITHREADING")
#SET_SOURCE_FILES_PROPERTIES(rays3d.cpp COMPILE_FLAGS ${CMAKE_CXX_FLAGS})
#SET_SOURCE_FILES_PROPERTIES(rays3d.cpp COMPILE_FLAGS "${CMAKE_CXX_FLAGS} -D EXPORTSWC -D RAYS_TESTING")
#SET_SOURCE_FILES_PROPERTIES(rays3d.cpp COMPILE_FLAGS "${CMAKE_CXX_FLAGS} -D RAYS_TESTING")

#TARGET_LINK_LIBRARIES(test3dRays ${SLICEME_THIRD_PARTY_LIBRARIES}))

ADD_LIBRARY(rays3d
combnk.cpp
pca.cpp
rays3d.cpp
rays3d_utils.cpp
)

#set(CMAKE_CXX_FLAGS  ${CMAKE_CXX_FLAGS_SAVED})
#SET_SOURCE_FILES_PROPERTIES(COMPILE_FLAGS ${CMAKE_CXX_FLAGS})

TARGET_LINK_LIBRARIES(rays3d ${ITK_LIBRARIES} ${OPENCV_LIBRARIES})
# SET_TARGET_PROPERTIES(rays3d PROPERTIES COMPILE_FLAGS -fPIC)