[ITK] [ITK-users] MRI brain data

Maya maya.abi_akl at qatar.tamu.edu
Thu Mar 24 08:34:07 EDT 2016 

I definitely will.
Thanks again for your prompt reply.

Best regards,
Maya

Maya Abi Akl
Physics Laboratory Coordinator
Science Department
Texas A&M University at Qatar
PO Box 23874 | Doha, Qatar
355 Texas A&M Engineering Building | Education City
(o) +974.4423.0202
Email: maya.abi_akl at qatar.tamu.edu<mailto:maya.abi_akl at qatar.tamu.edu>


From: dzenanz [via ITK Insight Users] [mailto:ml-node+s2283740n7588650h39 at n2.nabble.com]
Sent: Thursday, March 24, 2016 3:24 PM
To: Abi Akl, Maya <maya.abi_akl at qatar.tamu.edu>
Subject: Re: [ITK-users] MRI brain data

In that case, the first place to look would be grand challenge website<https://urldefense.proofpoint.com/v2/url?u=http-3A__grand-2Dchallenge.org_All-5FChallenges_&d=CwMFaQ&c=bnyvWLdNsiLM7TAqr9FAIzD3xPtiaC-DpEuDzu-03E4&r=N16Y7EA4OotTdsFfvR9_sJtDoeMkz85zsb-9JFwlY38&m=CZ9dMZjfVCvZu_vTnOVembHpDgWjWoEKVKn3V7jLP6A&s=4aYjMpbZE5IeZz1z1fDUildYxKOM6S_gGPYb8_MGjoo&e=>. You can also look at BrainWeb<https://urldefense.proofpoint.com/v2/url?u=http-3A__brainweb.bic.mni.mcgill.ca_brainweb_&d=CwMFaQ&c=bnyvWLdNsiLM7TAqr9FAIzD3xPtiaC-DpEuDzu-03E4&r=N16Y7EA4OotTdsFfvR9_sJtDoeMkz85zsb-9JFwlY38&m=CZ9dMZjfVCvZu_vTnOVembHpDgWjWoEKVKn3V7jLP6A&s=DVo23Xb7A9WfpJEu3R7cBs4HsDP9Zcbf1sZmD0e0CFw&e=>. Also, do a general web search from MRI, bias, brain. If you do not specifically require brain images, you can also look at SpineWeb<https://urldefense.proofpoint.com/v2/url?u=http-3A__spineweb.digitalimaginggroup.ca_&d=CwMFaQ&c=bnyvWLdNsiLM7TAqr9FAIzD3xPtiaC-DpEuDzu-03E4&r=N16Y7EA4OotTdsFfvR9_sJtDoeMkz85zsb-9JFwlY38&m=CZ9dMZjfVCvZu_vTnOVembHpDgWjWoEKVKn3V7jLP6A&s=tjzxhmsvlZhyKYfFhEibOYl-3wPiOkMpN1Qy2moyIGA&e=>.

HTH,
Dženan

On Thu, Mar 24, 2016 at 1:37 AM, Maya <[hidden email]</user/SendEmail.jtp?type=node&node=7588650&i=0>> wrote:
Hi Dzenan,

Thank you for the link, I’ll check it out and let you know.
I was hoping to find data for more than 1 patient, i.e. a sample with many MRI images to analyze.
Do you think it’s possible?

Thanks,
Maya

Maya Abi Akl
Physics Laboratory Coordinator
Science Department
Texas A&M University at Qatar
PO Box 23874 | Doha, Qatar
355 Texas A&M Engineering Building | Education City
(o) <a href="tel:%2B974.4423.0202" value="+97444230202">+974.4423.0202
Email: [hidden email]</user/SendEmail.jtp?type=node&node=7588650&i=1><mailto:[hidden email]</user/SendEmail.jtp?type=node&node=7588650&i=2>>


From: dzenanz [via ITK Insight Users] [mailto:[hidden email]</user/SendEmail.jtp?type=node&node=7588650&i=3>]
Sent: Wednesday, March 23, 2016 5:46 PM
To: Abi Akl, Maya <[hidden email]</user/SendEmail.jtp?type=node&node=7588650&i=4>>
Subject: Re: [ITK-users] MRI brain data

Hi Maya,

I don't know how much of a bias field this has (it seems to be weaker inferiorly), but you can use my brain scan:
https://dl.dropboxusercontent.com/u/48665006/tmj_DZ.nrrd<https://urldefense.proofpoint.com/v2/url?u=https-3A__dl.dropboxusercontent.com_u_48665006_tmj-5FDZ.nrrd&d=CwMFaQ&c=bnyvWLdNsiLM7TAqr9FAIzD3xPtiaC-DpEuDzu-03E4&r=N16Y7EA4OotTdsFfvR9_sJtDoeMkz85zsb-9JFwlY38&m=CZ9dMZjfVCvZu_vTnOVembHpDgWjWoEKVKn3V7jLP6A&s=daxBAIwLjXvVGkjpzqAxc5xqCUxvJxWVHmHDh_-j9OU&e=><https://urldefense.proofpoint.com/v2/url?u=https-3A__dl.dropboxusercontent.com_u_48665006_tmj-5FDZ.nrrd&d=CwMFaQ&c=bnyvWLdNsiLM7TAqr9FAIzD3xPtiaC-DpEuDzu-03E4&r=N16Y7EA4OotTdsFfvR9_sJtDoeMkz85zsb-9JFwlY38&m=VHSZZLdYrNF-5JR2SJw7qy1Az8IogQi9iqs5Y2SiNyk&s=obWbvyfDFQ2EfjY34N6m4DlbKacD3dpiFV7jOwLlA7I&e=>

Tell me if you find it useful.

Regards,
Dženan

On Wed, Mar 23, 2016 at 5:43 AM, Maya <[hidden email]</user/SendEmail.jtp?type=node&node=7588636&i=0>> wrote:
Hello,

I started using itk to do Bias Field correction on MRI brain data.
I would like to ask if there is any brain MRI data available with
significant bias field that I can use?\

Thanks,
Maya



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