[ITK] Problem with installing ITKApplications
Sara Gh
sg.ele.eng at gmail.com
Sun Mar 13 00:51:29 EST 2016
Thank you for your reply. Actually, I tried building ITK Apps Superbuild.
It also ends with some errors:
"4 errors generated.
make[5]: *** [src/CMakeFiles/fltk.dir/fl_line_style.cxx.o] Error 1
make[4]: *** [src/CMakeFiles/fltk.dir/all] Error 2
make[3]: *** [all] Error 2
make[2]: *** [FLTK-prefix/src/FLTK-stamp/FLTK-build] Error 2
make[1]: *** [CMakeFiles/FLTK.dir/all] Error 2
make: *** [all] Error 2"
Please find attached the text file including the errors I got.
Thanks,
Sara
On Fri, Mar 11, 2016 at 2:03 PM, Bill Lorensen <bill.lorensen at gmail.com>
wrote:
> Please use the ITK Apps superbuild.
> http://www.itk.org/ITK/resources/applications.html
>
> This will build all of the proper vtk,itk,fltk.
>
>
>
> On Fri, Mar 11, 2016 at 1:44 PM, Sara Gh <sg.ele.eng at gmail.com> wrote:
> > Hello ITK experts,
> >
> > I have been trying to make ITK Apps work but I have not been successful
> so
> > far. When I am building (making) ITKApps the process ends with 8 errors
> in
> > DICOMApp. I would be thankful if you could help me in this regard. I am
> on
> > Mac (El Capitan) and here is the summary of what I have done so far:
> >
> > 1- Installing CMake-3.4.1.
> > 2- Installing VTK-6.3.0
> > 3- Installing ITK-4.8.2
> > 4- Installing FLTK-1.3.3 (Initially, I had some issues with building FLTK
> > and came across to this; and using this solution: brew reinstall --devel
> >
> https://raw.githubusercontent.com/dpo/homebrew/ec46018128dde5bf466b013a6c7086d0880930a3/Library/Formula/fltk.rb
> > , I could fix the problem and fltk folder has been created at
> > \usr\local\Cellar\fltk\1.3.3-r10866_1\)
> > 5- Installing ITKApps:
> >
> > - Create a folder named "Applications"
> >
> > - In "Applications" directory run: git clone http://itk.org/ITKApps.git
> >
> > -This will make a floder named "ITKApps"
> >
> > - Then, create a folder named "build" in "Applications" directory
> >
> > - Use Cmake gui:
> >
> > * Source: PathTo/Applications/ITKApps
> > * Build: PathTo/Applications/build
> >
> > - Configure! There is a bug: Fltk resources not found, GUI application
> will
> > not respond to mouse events
> >
> > - Manually set the ITK_FLTK_RESOURCE to
> > \usr\local\Cellar\fltk\1.3.3-r10866_1\
> >
> > - Configure again! Successful!
> >
> > - Generate! Successful!
> >
> > - Go to /Applications/build directory, and make.
> >
> > This process ends with 8 errors related to DICOMApp.
> > "8 errors generated.
> > make[2]: *** [DICOMApp/CMakeFiles/DICOMApp.dir/main.cxx.o] Error
> 1make[1]:
> > *** [DICOMApp/CMakeFiles/DICOMApp.dir/all] Error 2
> > make: *** [all] Error 2"
> >
> > Please find attached the text file including the errors I got.
> >
> > Thanks,
> > Sara Gh
> >
> >
> > _______________________________________________
> > Community mailing list
> > Community at itk.org
> > http://public.kitware.com/mailman/listinfo/community
> >
>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com
>
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>> cmake ../ITKApps/Superbuild
-- The C compiler identification is AppleClang 7.0.2.7000181
-- The CXX compiler identification is AppleClang 7.0.2.7000181
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Git: /usr/bin/git (found version "2.5.4 (Apple Git-61)")
-- Found Subversion: /usr/bin/svn (found version "1.7.20")
-- Using External Project for VTK
-- Using External Project for ITK
-- Using External Project for FLTK
-- Configuring done
-- Generating done
-- Build files have been written to: /Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild
>>
>>
>>
>> make
Scanning dependencies of target FLTK
[ 3%] Creating directories for 'FLTK'
[ 6%] Performing download step (download, verify and extract) for 'FLTK'
-- downloading...
src='http://midas3.kitware.com/midas/download/bitstream/452953/FLTK-1.3-r9815-patched.zip'
dst='/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK-prefix/src/FLTK-1.3-r9815-patched.zip'
timeout='none'
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-- downloading... done
-- verifying file...
file='/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK-prefix/src/FLTK-1.3-r9815-patched.zip'
-- verifying file... warning: did not verify file - no URL_HASH specified?
-- extracting...
src='/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK-prefix/src/FLTK-1.3-r9815-patched.zip'
dst='/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 9%] No patch step for 'FLTK'
[ 12%] No update step for 'FLTK'
[ 15%] Performing configure step for 'FLTK'
-- The C compiler identification is AppleClang 7.0.2.7000181
-- The CXX compiler identification is AppleClang 7.0.2.7000181
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
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-- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE)
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-- Found ZLIB: /usr/lib/libz.dylib (found version "1.2.5")
-- Found PNG: /usr/local/lib/libpng.dylib (found version "1.6.21")
-- Configuring done
-- Generating done
-- Build files have been written to: /Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK-build
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/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_font_mac.cxx:48:39: warning: 'kCTFontHorizontalOrientation' is deprecated: first deprecated in OS X 10.11
[-Wdeprecated-declarations]
CTFontGetAdvancesForGlyphs(fontref, kCTFontHorizontalOrientation, glyph, advances, 2);
^
/System/Library/Frameworks/CoreText.framework/Headers/CTFontDescriptor.h:186:5: note: 'kCTFontHorizontalOrientation' has been explicitly marked deprecated here
kCTFontHorizontalOrientation CT_ENUM_DEPRECATED(10_5, 10_11, 3_2, 9_0) = kCTFontOrientationHorizontal,
^
In file included from /Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_font.cxx:51:
/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_font_mac.cxx:50:8: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
if ( abs(advances[0].width - advances[1].width) < 1E-2 ) {//this is a fixed-width font
^
/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_font_mac.cxx:50:8: note: use function 'std::abs' instead
if ( abs(advances[0].width - advances[1].width) < 1E-2 ) {//this is a fixed-width font
^~~
std::abs
/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_font_mac.cxx:50:8: note: include the header <cmath> or explicitly provide a declaration for 'std::abs'
/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_font_mac.cxx:55:45: warning: 'kCTFontHorizontalOrientation' is deprecated: first deprecated in OS X 10.11
[-Wdeprecated-declarations]
w = CTFontGetAdvancesForGlyphs(fontref, kCTFontHorizontalOrientation, glyph, NULL, 1);
^
/System/Library/Frameworks/CoreText.framework/Headers/CTFontDescriptor.h:186:5: note: 'kCTFontHorizontalOrientation' has been explicitly marked deprecated here
kCTFontHorizontalOrientation CT_ENUM_DEPRECATED(10_5, 10_11, 3_2, 9_0) = kCTFontOrientationHorizontal,
^
In file included from /Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_font.cxx:51:
/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_font_mac.cxx:281:44: warning: 'kCTFontHorizontalOrientation' is deprecated: first deprecated in OS X 10.11
[-Wdeprecated-declarations]
if (b) CTFontGetAdvancesForGlyphs(font2, kCTFontHorizontalOrientation, glyphs, &a, 1);
^
/System/Library/Frameworks/CoreText.framework/Headers/CTFontDescriptor.h:186:5: note: 'kCTFontHorizontalOrientation' has been explicitly marked deprecated here
kCTFontHorizontalOrientation CT_ENUM_DEPRECATED(10_5, 10_11, 3_2, 9_0) = kCTFontOrientationHorizontal,
^
In file included from /Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_font.cxx:51:
/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_font_mac.cxx:315:53: warning: 'kCTFontHorizontalOrientation' is deprecated: first deprecated in OS X 10.11
[-Wdeprecated-declarations]
CTFontGetAdvancesForGlyphs(fl_fontsize->fontref, kCTFontHorizontalOrientation, &glyph, &advance_size, 1);
^
/System/Library/Frameworks/CoreText.framework/Headers/CTFontDescriptor.h:186:5: note: 'kCTFontHorizontalOrientation' has been explicitly marked deprecated here
kCTFontHorizontalOrientation CT_ENUM_DEPRECATED(10_5, 10_11, 3_2, 9_0) = kCTFontOrientationHorizontal,
^
In file included from /Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_font.cxx:51:
/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_font_mac.cxx:339:48: warning: 'kCTFontHorizontalOrientation' is deprecated: first deprecated in OS X 10.11
[-Wdeprecated-declarations]
if (b) CTFontGetAdvancesForGlyphs(font2, kCTFontHorizontalOrientation, &glyph, &advance_size, 1);
^
/System/Library/Frameworks/CoreText.framework/Headers/CTFontDescriptor.h:186:5: note: 'kCTFontHorizontalOrientation' has been explicitly marked deprecated here
kCTFontHorizontalOrientation CT_ENUM_DEPRECATED(10_5, 10_11, 3_2, 9_0) = kCTFontOrientationHorizontal,
^
6 warnings generated.
[ 56%] Building CXX object src/CMakeFiles/fltk.dir/fl_gtk.cxx.o
[ 56%] Building CXX object src/CMakeFiles/fltk.dir/fl_labeltype.cxx.o
[ 57%] Building CXX object src/CMakeFiles/fltk.dir/fl_line_style.cxx.o
/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_line_style.cxx:38:13: error: elaborated type refers to a typedef
static enum CGLineCap fl_quartz_line_cap_ = kCGLineCapButt;
^
/System/Library/Frameworks/CoreGraphics.framework/Headers/CGPath.h:33:26: note: declared here
typedef CF_ENUM(int32_t, CGLineCap) {
^
/System/Library/Frameworks/CoreFoundation.framework/Headers/CFAvailability.h:127:88: note: expanded from macro 'CF_ENUM'
#define CF_ENUM(...) __CF_ENUM_GET_MACRO(__VA_ARGS__, __CF_NAMED_ENUM, __CF_ANON_ENUM)(__VA_ARGS__)
^
/System/Library/Frameworks/CoreFoundation.framework/Headers/CFAvailability.h:110:45: note: expanded from macro '__CF_NAMED_ENUM'
#define __CF_NAMED_ENUM(_type, _name) _type _name; enum
^
/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_line_style.cxx:39:13: error: elaborated type refers to a typedef
static enum CGLineJoin fl_quartz_line_join_ = kCGLineJoinMiter;
^
/System/Library/Frameworks/CoreGraphics.framework/Headers/CGPath.h:25:26: note: declared here
typedef CF_ENUM(int32_t, CGLineJoin) {
^
/System/Library/Frameworks/CoreFoundation.framework/Headers/CFAvailability.h:127:88: note: expanded from macro 'CF_ENUM'
#define CF_ENUM(...) __CF_ENUM_GET_MACRO(__VA_ARGS__, __CF_NAMED_ENUM, __CF_ANON_ENUM)(__VA_ARGS__)
^
/System/Library/Frameworks/CoreFoundation.framework/Headers/CFAvailability.h:110:45: note: expanded from macro '__CF_NAMED_ENUM'
#define __CF_NAMED_ENUM(_type, _name) _type _name; enum
^
/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_line_style.cxx:113:15: error: elaborated type refers to a typedef
static enum CGLineCap Cap[4] = { kCGLineCapButt, kCGLineCapButt,
^
/System/Library/Frameworks/CoreGraphics.framework/Headers/CGPath.h:33:26: note: declared here
typedef CF_ENUM(int32_t, CGLineCap) {
^
/System/Library/Frameworks/CoreFoundation.framework/Headers/CFAvailability.h:127:88: note: expanded from macro 'CF_ENUM'
#define CF_ENUM(...) __CF_ENUM_GET_MACRO(__VA_ARGS__, __CF_NAMED_ENUM, __CF_ANON_ENUM)(__VA_ARGS__)
^
/System/Library/Frameworks/CoreFoundation.framework/Headers/CFAvailability.h:110:45: note: expanded from macro '__CF_NAMED_ENUM'
#define __CF_NAMED_ENUM(_type, _name) _type _name; enum
^
/Volumes/Academic/ITKVTK/Applications/ITKApps-Superbuild/FLTK/src/fl_line_style.cxx:115:15: error: elaborated type refers to a typedef
static enum CGLineJoin Join[4] = { kCGLineJoinMiter, kCGLineJoinMiter,
^
/System/Library/Frameworks/CoreGraphics.framework/Headers/CGPath.h:25:26: note: declared here
typedef CF_ENUM(int32_t, CGLineJoin) {
^
/System/Library/Frameworks/CoreFoundation.framework/Headers/CFAvailability.h:127:88: note: expanded from macro 'CF_ENUM'
#define CF_ENUM(...) __CF_ENUM_GET_MACRO(__VA_ARGS__, __CF_NAMED_ENUM, __CF_ANON_ENUM)(__VA_ARGS__)
^
/System/Library/Frameworks/CoreFoundation.framework/Headers/CFAvailability.h:110:45: note: expanded from macro '__CF_NAMED_ENUM'
#define __CF_NAMED_ENUM(_type, _name) _type _name; enum
^
4 errors generated.
make[5]: *** [src/CMakeFiles/fltk.dir/fl_line_style.cxx.o] Error 1
make[4]: *** [src/CMakeFiles/fltk.dir/all] Error 2
make[3]: *** [all] Error 2
make[2]: *** [FLTK-prefix/src/FLTK-stamp/FLTK-build] Error 2
make[1]: *** [CMakeFiles/FLTK.dir/all] Error 2
make: *** [all] Error 2
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