From carminepagliaro at gmail.com  Sun Nov  1 05:48:44 2015
From: carminepagliaro at gmail.com (Carmine Pagliaro)
Date: Sun, 1 Nov 2015 11:48:44 +0100
Subject: [ITK] [ITK-users] (no subject)
In-Reply-To: <CALA4QTjd7e=Bt2ZhoiV7Lg2nM=3skaRtn--i-26OvuyhsG1QbQ@mail.gmail.com>
References: <CALA4QThEPAgh9J=jUVRXN5VZUUDKYsN-T2v+no2TzRpfTZQk1A@mail.gmail.com>
 <CALzTN-QnHH6ngXA4ukPSZNQLETopzEFgu=VtriCn3+pOHYmjQA@mail.gmail.com>
 <CALA4QTjNgLCyz7665jfJJ_BPQRmOxA2cX-mWFtVQXx6Lf0Suzw@mail.gmail.com>
 <CAPf2UMTyS9Y_hpDToZgBfACLv-aSdUz+5zCPXr+t5bUYtauphA@mail.gmail.com>
 <CALA4QTgzcke68Dhfgmbw9uMUhobWc-2w1=PgMTB42V73wXN5Zg@mail.gmail.com>
 <CALzTN-RTyN=TBpKgV0we_mr58OmxUCzaSsL3caEPpk9789RLVA@mail.gmail.com>
 <CALA4QTjd7e=Bt2ZhoiV7Lg2nM=3skaRtn--i-26OvuyhsG1QbQ@mail.gmail.com>
Message-ID: <CALA4QTgBPzif0qJ+YSekbhp0s4Oe_-v+F6yBOkvmAV+16cQ6xQ@mail.gmail.com>

very very complicated

2015-10-31 17:51 GMT+01:00 Carmine Pagliaro <carminepagliaro at gmail.com>:

> ok
>
> 2015-10-31 17:49 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:
>
>> Hi Carmine,
>>
>> Use the existing optimizer classes as an example, and examine the API
>> and its descriptions in the Doxygen documentation.
>>
>> HTH,
>> Matt
>>
>> On Sat, Oct 31, 2015 at 12:07 PM, Carmine Pagliaro
>> <carminepagliaro at gmail.com> wrote:
>> > oh yes but, I would know how can I create a new one. i.e
>> > RegularStepGradientDescentBaseOptimizer becomes MyPersonalOptimizer. in
>> this
>> > class i'll write my personal algorithm.
>> >
>> > 2015-10-31 16:54 GMT+01:00 D?enan Zuki? <dzenanz at gmail.com>:
>> >>
>> >> You should probably look at one of the registration examples to see
>> how an
>> >> optimizer is used:
>> >> http://itk.org/Wiki/ITK/Examples/Included/Registration
>> >>
>> >> HTH
>> >>
>> >> On Sat, Oct 31, 2015 at 7:07 AM, Carmine Pagliaro
>> >> <carminepagliaro at gmail.com> wrote:
>> >>>
>> >>> Thank you for the reply, Dr. McCormick.
>> >>> But that not help me.
>> >>> I don't understand how I can create a new optimizer algorithm and
>> pass it
>> >>> to the registration->SetOptimizer() method
>> >>>
>> >>>
>> >>> 2015-10-30 17:02 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com
>> >:
>> >>>>
>> >>>> Hi Carmine,
>> >>>>
>> >>>> To see all the optimizer options, go to the base class in Doxygen:
>> >>>>
>> >>>>
>> >>>>
>> http://www.itk.org/Doxygen/html/classitk_1_1SingleValuedNonLinearOptimizer.html
>> >>>>
>> >>>> Then, look at the inheritance diagram.  There are options like the
>> >>>> OnePlusOneEvolutionaryOptimizer and ParticleSwarmOptimizer.
>> >>>>
>> >>>> Hope this helps,
>> >>>> Matt
>> >>>>
>> >>>> On Fri, Oct 30, 2015 at 10:59 AM, Carmine Pagliaro
>> >>>> <carminepagliaro at gmail.com> wrote:
>> >>>> > Dear ITK team,
>> >>>> >
>> >>>> > in the file attacched I register 2 mri image in nifti format.
>> >>>> >
>> >>>> > the optimization algorithm is gradientdescent
>> >>>> >
>> >>>> > typedef itk::RegularStepGradientDescentOptimizer
>>  OptimizerType;
>> >>>> >
>> >>>> > I would make one myself using annealing. so how can I do this?
>> >>>> >
>> >>>> > how could I must modified the follow code ? what is optimizer?
>> >>>> >
>> >>>> > OptimizerType::Pointer      optimizer     = OptimizerType::New();
>> >>>> > registration->SetOptimizer(     optimizer     );
>> >>>> >
>> >>>> > thank you very much
>> >>>> > --
>> >>>> > Carmine Pagliaro
>> >>>> > Life is for sharing.
>> >>>> >
>> >>>> >
>> >>>> > _____________________________________
>> >>>> > Powered by www.kitware.com
>> >>>> >
>> >>>> > Visit other Kitware open-source projects at
>> >>>> > http://www.kitware.com/opensource/opensource.html
>> >>>> >
>> >>>> > Kitware offers ITK Training Courses, for more information visit:
>> >>>> > http://www.kitware.com/products/protraining.php
>> >>>> >
>> >>>> > Please keep messages on-topic and check the ITK FAQ at:
>> >>>> > http://www.itk.org/Wiki/ITK_FAQ
>> >>>> >
>> >>>> > Follow this link to subscribe/unsubscribe:
>> >>>> > http://public.kitware.com/mailman/listinfo/insight-users
>> >>>> >
>> >>>
>> >>>
>> >>>
>> >>>
>> >>> --
>> >>> Carmine Pagliaro
>> >>> Life is for sharing.
>> >>>
>> >>>
>> >>> _____________________________________
>> >>> Powered by www.kitware.com
>> >>>
>> >>> Visit other Kitware open-source projects at
>> >>> http://www.kitware.com/opensource/opensource.html
>> >>>
>> >>> Kitware offers ITK Training Courses, for more information visit:
>> >>> http://www.kitware.com/products/protraining.php
>> >>>
>> >>> Please keep messages on-topic and check the ITK FAQ at:
>> >>> http://www.itk.org/Wiki/ITK_FAQ
>> >>>
>> >>> Follow this link to subscribe/unsubscribe:
>> >>> http://public.kitware.com/mailman/listinfo/insight-users
>> >>>
>> >>
>> >
>> >
>> >
>> > --
>> > Carmine Pagliaro
>> > Life is for sharing.
>> >
>>
>
>
>
> --
> Carmine Pagliaro
> *Life is for sharing.*
>
>


-- 
Carmine Pagliaro
*Life is for sharing.*
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From loic.itk at gmail.com  Sun Nov  1 09:02:23 2015
From: loic.itk at gmail.com (Loic Le Folgoc)
Date: Sun, 1 Nov 2015 15:02:23 +0100
Subject: [ITK] [ITK-users] Demons Registration on a Region of Interest
In-Reply-To: <CAARpg10Ptegj8O2dOKMOHoptrH_5pmV1NXrjWfD2KEL6CgmVUA@mail.gmail.com>
References: <1124110917.5970566.1446126548319.JavaMail.zimbra@univ-poitiers.fr>
 <CAPf2UMTrenc_djUsOoAA82eqg8g06jPSOP4LD1hgGvLVA_0n_g@mail.gmail.com>
 <CAARpg10Ptegj8O2dOKMOHoptrH_5pmV1NXrjWfD2KEL6CgmVUA@mail.gmail.com>
Message-ID: <56361B6F.5040206@gmail.com>

 From the previous mails I'd assume you tried this as a starting point 
but just in case: you did try to pass a smaller region as requested 
region for the output 
(filter->GetOutput()->SetRequestedRegion(my_region) before calling 
filter->Update()), didn't you? From a quick glance at the cascade of 
filters which the DemonsImageFilter inherits from, it's not obvious that 
the filter does not respect the requested region set by the user for the 
output.

Otherwise, assuming your images are already affinely registered, it 
should be fairly safe to only run the algorithm on cropped images as 
suggested, yes, especially if you expect the motion at the boundary of 
your smaller domain to be roughly null.

Another silly question/comment in case none of the above helps, and 
before you decide to invest time adapting the code: is the runtime of 
the demons algorithm an annoying bottleneck to you? I'd imagine it's one 
of the fastest algorithms out there. If it's fast enough, maybe you can 
just run it on the full images regardless.

Le 31/10/2015 17:07, Nhung Pham a ?crit :
> Normally with Python, I can register one template( e.g: a center 
> region of reference image) to the target image to find the 
> corresponding position of the template in the target image. In this 
> Demon Registration algorithm, we of course do not know the position of 
> the template in the fixed image, so my goal is not to register two 
> smaller images but to find the best match of the small region in the 
> fixed image, or do you mean I should do registration with small 
> regions of fixed image iteratively? (Sorry, my English is not so good)
>
> Best regards,
> ===============================
> Pha?m H??ng Nhung,
> ICT Department,
> University of Science and Technology of Hanoi.
> Mobile: +84979093732
> Gmail: phnhung98 at gmail.com <mailto:phnhung98 at gmail.com>
> Skype: phnhung98
>
> On Sat, Oct 31, 2015 at 4:51 PM, D?enan Zuki? <dzenanz at gmail.com 
> <mailto:dzenanz at gmail.com>> wrote:
>
>     Have you tried extracting only the regions of interest using RoI
>     <http://www.itk.org/Doxygen/html/classitk_1_1RegionOfInterestImageFilter.html>
>     filter and registering these two smaller images? That is the usual
>     workaround if some filter does not respect requested region.
>
>     HTH
>
>     On Thu, Oct 29, 2015 at 9:49 AM, HONG NHUNG PHAM
>     <hong.nhung.pham at univ-poitiers.fr
>     <mailto:hong.nhung.pham at univ-poitiers.fr>> wrote:
>
>         Hello everyone,
>
>         I want to apply Demons Registration to register two medical
>         images, the image information is strong at the center,
>         therefore I want to apply registration method on only the
>         center region of the images. For example, take a center region
>         of moving image, and find the corresponding positions of each
>         pixel of the region in the fixed image. However, I can not
>         find a method that allows processing on a region like that in
>         itkDemonsRegistrationFilter.h. I tried passing the full fixed
>         image as SetFixedImage, and only the center region of moving
>         image as SetMovingImage. However, it crashes because it
>         requires same size of fixed image and moving image.
>
>         Does anyone have any idea of how to pass a region to demons
>         registration filter?
>
>         Thank you in advance!
>
>
>
>         _____________________________________
>         Powered by www.kitware.com <http://www.kitware.com>
>
>         Visit other Kitware open-source projects at
>         http://www.kitware.com/opensource/opensource.html
>
>         Kitware offers ITK Training Courses, for more information visit:
>         http://www.kitware.com/products/protraining.php
>
>         Please keep messages on-topic and check the ITK FAQ at:
>         http://www.itk.org/Wiki/ITK_FAQ
>
>         Follow this link to subscribe/unsubscribe:
>         http://public.kitware.com/mailman/listinfo/insight-users
>
>
>
>     _____________________________________
>     Powered by www.kitware.com <http://www.kitware.com>
>
>     Visit other Kitware open-source projects at
>     http://www.kitware.com/opensource/opensource.html
>
>     Kitware offers ITK Training Courses, for more information visit:
>     http://www.kitware.com/products/protraining.php
>
>     Please keep messages on-topic and check the ITK FAQ at:
>     http://www.itk.org/Wiki/ITK_FAQ
>
>     Follow this link to subscribe/unsubscribe:
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>
>
>
>
> _____________________________________ Powered by www.kitware.com Visit 
> other Kitware open-source projects at 
> http://www.kitware.com/opensource/opensource.html Kitware offers ITK 
> Training Courses, for more information visit: 
> http://www.kitware.com/products/protraining.php Please keep messages 
> on-topic and check the ITK FAQ at: http://www.itk.org/Wiki/ITK_FAQ 
> Follow this link to subscribe/unsubscribe: 
> http://public.kitware.com/mailman/listinfo/insight-users

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From bill.lorensen at gmail.com  Sun Nov  1 11:21:38 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Sun, 1 Nov 2015 11:21:38 -0500
Subject: [ITK] [ITK-dev] Clang compile error
Message-ID: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>

On my Mac clang build I get this:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
error: cannot initialize a parameter of type
      'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
    return __sync_add_and_fetch(ref, 1);
                                ^~~
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
note: in instantiation of member function
      'itk::Detail::AtomicOps<8>::PreIncrement' requested here
    return static_cast<T>(Impl::PreIncrement(&this->m_Object));
                                ^
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
note: in instantiation of member function
      'itk::AtomicInt<unsigned long long>::operator++' requested here
    idx = ++TotalAtomic64;
          ^
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
error: cannot initialize a parameter of type
      'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
    return __sync_sub_and_fetch(ref, 1);
                                ^~~
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
note: in instantiation of member function
      'itk::Detail::AtomicOps<8>::PreDecrement' requested here
    return static_cast<T>(Impl::PreDecrement(&this->m_Object));
                                ^
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
note: in instantiation of member function
      'itk::AtomicInt<unsigned long long>::operator--' requested here
    --TotalAtomic64;
    ^
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
error: cannot initialize a parameter of type
      'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
    return __sync_add_and_fetch(ref, val);
                                ^~~
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
note: in instantiation of member function
      'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
    return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
                                ^
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
note: in instantiation of member function
      'itk::AtomicInt<unsigned long long>::operator+=' requested here
    idx = TotalAtomic64 += 1;
                        ^
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
error: cannot initialize a parameter of type
      'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
    return __sync_fetch_and_add(ref, 1);
                                ^~~
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
note: in instantiation of member function
      'itk::Detail::AtomicOps<8>::PostIncrement' requested here
    return static_cast<T>(Impl::PostIncrement(&this->m_Object));
                                ^
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
note: in instantiation of member function
      'itk::AtomicInt<unsigned long long>::operator++' requested here
    TotalAtomic64++;
                 ^
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
error: cannot initialize a parameter of type
      'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
    return __sync_fetch_and_sub(ref, 1);
                                ^~~
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
note: in instantiation of member function
      'itk::Detail::AtomicOps<8>::PostDecrement' requested here
    return static_cast<T>(Impl::PostDecrement(&this->m_Object));
                                ^
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
note: in instantiation of member function
      'itk::AtomicInt<unsigned long long>::operator--' requested here
    TotalAtomic64--;
                 ^
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
In file included from
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
error: cannot initialize a parameter of type
      'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
    return __sync_sub_and_fetch(ref, val);
                                ^~~
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
note: in instantiation of member function
      'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
    return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
                                ^
/Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
note: in instantiation of member function
      'itk::AtomicInt<unsigned long long>::operator-=' requested here
    TotalAtomic64 -= 1;
                  ^
6 errors generated.
make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
Error 1
make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
Error 2
make: *** [all] Error 2
[ITK-clang]
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From bill.lorensen at gmail.com  Sun Nov  1 11:32:02 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Sun, 1 Nov 2015 11:32:02 -0500
Subject: [ITK] [ITK-users] ItkVtkglue and VTK OpenGL2
In-Reply-To: <3DEFA5A8-871A-493C-A328-5D3664D8566E@dominionsw.com>
References: <3DEFA5A8-871A-493C-A328-5D3664D8566E@dominionsw.com>
Message-ID: <CADZJ4hNEy4EoDXxs8dsdbLyzXYrOh5r4+Qh4p--MGW7XQSKr7Q@mail.gmail.com>

There is no itkVtkGlue.cmake file that I can find. Can you show me
what you are doing? Are you building wiki examples locally, as a
remote module. Or are you just trying to build ITK with the glue stuff
enabled?

Bill


On Sat, Oct 31, 2015 at 1:02 PM, Richard Frank <rfrank at dominionsw.com> wrote:
>
> Hi,
>
> Any further developments on this? If there's a patch I can apply I would
> like to try it.
> Would like to have the OpenGL 2 support for an application using the vtkITK
> bridge.
>
>
> Thanks,
>
> Rick
>
>
> Date: Thu, 29 Oct 2015 18:32:49 -0400
> From: Bill Lorensen <bill.lorensen at gmail.com>
> To: Richard Frank <rfrank at dominionsw.com>
> Cc: Insight-Users <insight-users at itk.org>
> Subject: Re: [ITK-users] ItkVtkglue and VTK OpenGL2?
> Message-ID:
>    <CADZJ4hOEgyk=CTo_+dg9=HAvEmrmAY7tFE6xnrCwij2LHGrnnQ at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> I'll check into this.
>
> On Oct 29, 2015 6:31 PM, "Richard Frank" <rfrank at dominionsw.com> wrote:
>
>
> It seems that in itkVtkGlue.cmake CMake is looking for vtkRenderingOpenGL
>
> which isn't available with OpenGL2 flags turned on for CMake.
>
>
> Is this a problem with the Cmake file or did I forget to check or uncheck
>
> something?
>
> Rick Frank
>
> Sent from my iPad



-- 
Unpaid intern in BillsBasement at noware dot com
_____________________________________
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From matt.mccormick at kitware.com  Sun Nov  1 14:15:55 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Sun, 1 Nov 2015 14:15:55 -0500
Subject: [ITK] [ITK-dev]   Clang compile error
In-Reply-To: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
References: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
Message-ID: <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>

Hi Bill,

What is the OSX / Clang / Xcode version?

Thanks,
Matt

On Sun, Nov 1, 2015 at 11:21 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> On my Mac clang build I get this:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
> error: cannot initialize a parameter of type
>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>     return __sync_add_and_fetch(ref, 1);
>                                 ^~~
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
> note: in instantiation of member function
>       'itk::Detail::AtomicOps<8>::PreIncrement' requested here
>     return static_cast<T>(Impl::PreIncrement(&this->m_Object));
>                                 ^
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
> note: in instantiation of member function
>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>     idx = ++TotalAtomic64;
>           ^
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
> error: cannot initialize a parameter of type
>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>     return __sync_sub_and_fetch(ref, 1);
>                                 ^~~
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
> note: in instantiation of member function
>       'itk::Detail::AtomicOps<8>::PreDecrement' requested here
>     return static_cast<T>(Impl::PreDecrement(&this->m_Object));
>                                 ^
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
> note: in instantiation of member function
>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>     --TotalAtomic64;
>     ^
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
> error: cannot initialize a parameter of type
>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>     return __sync_add_and_fetch(ref, val);
>                                 ^~~
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
> note: in instantiation of member function
>       'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
>     return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
>                                 ^
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
> note: in instantiation of member function
>       'itk::AtomicInt<unsigned long long>::operator+=' requested here
>     idx = TotalAtomic64 += 1;
>                         ^
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
> error: cannot initialize a parameter of type
>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>     return __sync_fetch_and_add(ref, 1);
>                                 ^~~
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
> note: in instantiation of member function
>       'itk::Detail::AtomicOps<8>::PostIncrement' requested here
>     return static_cast<T>(Impl::PostIncrement(&this->m_Object));
>                                 ^
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
> note: in instantiation of member function
>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>     TotalAtomic64++;
>                  ^
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
> error: cannot initialize a parameter of type
>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>     return __sync_fetch_and_sub(ref, 1);
>                                 ^~~
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
> note: in instantiation of member function
>       'itk::Detail::AtomicOps<8>::PostDecrement' requested here
>     return static_cast<T>(Impl::PostDecrement(&this->m_Object));
>                                 ^
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
> note: in instantiation of member function
>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>     TotalAtomic64--;
>                  ^
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
> In file included from
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
> error: cannot initialize a parameter of type
>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>     return __sync_sub_and_fetch(ref, val);
>                                 ^~~
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
> note: in instantiation of member function
>       'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
>     return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
>                                 ^
> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
> note: in instantiation of member function
>       'itk::AtomicInt<unsigned long long>::operator-=' requested here
>     TotalAtomic64 -= 1;
>                   ^
> 6 errors generated.
> make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
> Error 1
> make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
> Error 2
> make: *** [all] Error 2
> [ITK-clang]
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
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> _______________________________________________
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> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
_______________________________________________
Powered by www.kitware.com

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From rfrank at dominionsw.com  Sun Nov  1 14:42:58 2015
From: rfrank at dominionsw.com (Richard Frank)
Date: Sun, 1 Nov 2015 19:42:58 +0000
Subject: [ITK] [ITK-users] ItkVtkglue and VTK OpenGL2
In-Reply-To: <CADZJ4hNEy4EoDXxs8dsdbLyzXYrOh5r4+Qh4p--MGW7XQSKr7Q@mail.gmail.com>
References: <3DEFA5A8-871A-493C-A328-5D3664D8566E@dominionsw.com>
 <CADZJ4hNEy4EoDXxs8dsdbLyzXYrOh5r4+Qh4p--MGW7XQSKr7Q@mail.gmail.com>
Message-ID: <616BE53F43DE0848B1810A093098277E658E1D5E@S11MAILD032N2.sh11.lan>

Hi Bill

Thanks for checking into this.

I am building Qt5.5.0 VTK6.3.0 and ITK4.8.1
I think my issue has something to do with not having the right flags set when building VTK or.....
VTK OpenGL2 doesn't support QVTKWidget2 perhaps.

I tossed everything and rebuilt using on VTK

Module_vtkRenderingContextOpenGL2 on
Module_vtkR.........LICOpenGL2 on
Module_vtkR.......OpenGL2 on
Module_vtkR........Qt on
Module_vtkR.......VolumentOpenGL2 on.

This built fine with the itkVtkGlue on in ITK4.8.1.

But when I run my application I get
"The program can't start because vtkGUISupportQtOpenGL-6.5.dll is missing."   (it wasn't built)

However if I turn that on in CMake I believe (I'll have to rebuild to try again) it  tells me that I can't have them openGL and openGL2 both on......
Or something and if I turn it off I think I run into the problem I mentioned.

I guess does OpenGL2 work with QT via VTK? If it does then what settings am I messing up?

Thanks

Rick


-----Original Message-----
From: Bill Lorensen [mailto:bill.lorensen at gmail.com] 
Sent: Sunday, November 01, 2015 11:32 AM
To: Richard Frank
Cc: insight-users at itk.org
Subject: Re: [ITK-users] ItkVtkglue and VTK OpenGL2

There is no itkVtkGlue.cmake file that I can find. Can you show me what you are doing? Are you building wiki examples locally, as a remote module. Or are you just trying to build ITK with the glue stuff enabled?

Bill


On Sat, Oct 31, 2015 at 1:02 PM, Richard Frank <rfrank at dominionsw.com> wrote:
>
> Hi,
>
> Any further developments on this? If there's a patch I can apply I 
> would like to try it.
> Would like to have the OpenGL 2 support for an application using the 
> vtkITK bridge.
>
>
> Thanks,
>
> Rick
>
>
> Date: Thu, 29 Oct 2015 18:32:49 -0400
> From: Bill Lorensen <bill.lorensen at gmail.com>
> To: Richard Frank <rfrank at dominionsw.com>
> Cc: Insight-Users <insight-users at itk.org>
> Subject: Re: [ITK-users] ItkVtkglue and VTK OpenGL2?
> Message-ID:
>    
> <CADZJ4hOEgyk=CTo_+dg9=HAvEmrmAY7tFE6xnrCwij2LHGrnnQ at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> I'll check into this.
>
> On Oct 29, 2015 6:31 PM, "Richard Frank" <rfrank at dominionsw.com> wrote:
>
>
> It seems that in itkVtkGlue.cmake CMake is looking for 
> vtkRenderingOpenGL
>
> which isn't available with OpenGL2 flags turned on for CMake.
>
>
> Is this a problem with the Cmake file or did I forget to check or 
> uncheck
>
> something?
>
> Rick Frank
>
> Sent from my iPad



--
Unpaid intern in BillsBasement at noware dot com
_____________________________________
Powered by www.kitware.com

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Kitware offers ITK Training Courses, for more information visit:
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From bill.lorensen at gmail.com  Sun Nov  1 15:03:30 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Sun, 1 Nov 2015 15:03:30 -0500
Subject: [ITK] [ITK-dev]   Clang compile error
In-Reply-To: <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>
References: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
 <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>
Message-ID: <CADZJ4hPQ7vX69m9Eq5_Gwe6MY85+wsS05g2dyjtH7vLX_6q73Q@mail.gmail.com>

OSX 10.7.5

Apple clang version 3.0 (tags/Apple/clang-211.12) (based on LLVM 3.0svn)
Target: x86_64-apple-darwin11.4.2
Thread model: posix


On Sun, Nov 1, 2015 at 2:15 PM, Matt McCormick
<matt.mccormick at kitware.com> wrote:
> Hi Bill,
>
> What is the OSX / Clang / Xcode version?
>
> Thanks,
> Matt
>
> On Sun, Nov 1, 2015 at 11:21 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>> On my Mac clang build I get this:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
>> error: cannot initialize a parameter of type
>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>     return __sync_add_and_fetch(ref, 1);
>>                                 ^~~
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
>> note: in instantiation of member function
>>       'itk::Detail::AtomicOps<8>::PreIncrement' requested here
>>     return static_cast<T>(Impl::PreIncrement(&this->m_Object));
>>                                 ^
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
>> note: in instantiation of member function
>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>     idx = ++TotalAtomic64;
>>           ^
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
>> error: cannot initialize a parameter of type
>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>     return __sync_sub_and_fetch(ref, 1);
>>                                 ^~~
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
>> note: in instantiation of member function
>>       'itk::Detail::AtomicOps<8>::PreDecrement' requested here
>>     return static_cast<T>(Impl::PreDecrement(&this->m_Object));
>>                                 ^
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
>> note: in instantiation of member function
>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>     --TotalAtomic64;
>>     ^
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
>> error: cannot initialize a parameter of type
>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>     return __sync_add_and_fetch(ref, val);
>>                                 ^~~
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
>> note: in instantiation of member function
>>       'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
>>     return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
>>                                 ^
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
>> note: in instantiation of member function
>>       'itk::AtomicInt<unsigned long long>::operator+=' requested here
>>     idx = TotalAtomic64 += 1;
>>                         ^
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
>> error: cannot initialize a parameter of type
>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>     return __sync_fetch_and_add(ref, 1);
>>                                 ^~~
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
>> note: in instantiation of member function
>>       'itk::Detail::AtomicOps<8>::PostIncrement' requested here
>>     return static_cast<T>(Impl::PostIncrement(&this->m_Object));
>>                                 ^
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
>> note: in instantiation of member function
>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>     TotalAtomic64++;
>>                  ^
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
>> error: cannot initialize a parameter of type
>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>     return __sync_fetch_and_sub(ref, 1);
>>                                 ^~~
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
>> note: in instantiation of member function
>>       'itk::Detail::AtomicOps<8>::PostDecrement' requested here
>>     return static_cast<T>(Impl::PostDecrement(&this->m_Object));
>>                                 ^
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
>> note: in instantiation of member function
>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>     TotalAtomic64--;
>>                  ^
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>> In file included from
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
>> error: cannot initialize a parameter of type
>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>     return __sync_sub_and_fetch(ref, val);
>>                                 ^~~
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
>> note: in instantiation of member function
>>       'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
>>     return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
>>                                 ^
>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
>> note: in instantiation of member function
>>       'itk::AtomicInt<unsigned long long>::operator-=' requested here
>>     TotalAtomic64 -= 1;
>>                   ^
>> 6 errors generated.
>> make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
>> Error 1
>> make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
>> Error 2
>> make: *** [all] Error 2
>> [ITK-clang]
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community



-- 
Unpaid intern in BillsBasement at noware dot com
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
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Kitware offers ITK Training Courses, for more information visit:
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From bill.lorensen at gmail.com  Sun Nov  1 15:39:02 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Sun, 1 Nov 2015 15:39:02 -0500
Subject: [ITK] [ITK-users] ItkVtkglue and VTK OpenGL2
In-Reply-To: <616BE53F43DE0848B1810A093098277E658E1D5E@S11MAILD032N2.sh11.lan>
References: <3DEFA5A8-871A-493C-A328-5D3664D8566E@dominionsw.com>
 <CADZJ4hNEy4EoDXxs8dsdbLyzXYrOh5r4+Qh4p--MGW7XQSKr7Q@mail.gmail.com>
 <616BE53F43DE0848B1810A093098277E658E1D5E@S11MAILD032N2.sh11.lan>
Message-ID: <CADZJ4hPr04ksLwzX8GC+o2C3txRN+U--323uM2_yXX0vErpWYQ@mail.gmail.com>

So this does not sound like a  itkVtkGlue issue but rather a VTK issue?

If you have a small, complete compilable example with a cmake file
that illustrates the problem I might be able to help.

On Sun, Nov 1, 2015 at 2:42 PM, Richard Frank <rfrank at dominionsw.com> wrote:
> Hi Bill
>
> Thanks for checking into this.
>
> I am building Qt5.5.0 VTK6.3.0 and ITK4.8.1
> I think my issue has something to do with not having the right flags set when building VTK or.....
> VTK OpenGL2 doesn't support QVTKWidget2 perhaps.
>
> I tossed everything and rebuilt using on VTK
>
> Module_vtkRenderingContextOpenGL2 on
> Module_vtkR.........LICOpenGL2 on
> Module_vtkR.......OpenGL2 on
> Module_vtkR........Qt on
> Module_vtkR.......VolumentOpenGL2 on.
>
> This built fine with the itkVtkGlue on in ITK4.8.1.
>
> But when I run my application I get
> "The program can't start because vtkGUISupportQtOpenGL-6.5.dll is missing."   (it wasn't built)
>
> However if I turn that on in CMake I believe (I'll have to rebuild to try again) it  tells me that I can't have them openGL and openGL2 both on......
> Or something and if I turn it off I think I run into the problem I mentioned.
>
> I guess does OpenGL2 work with QT via VTK? If it does then what settings am I messing up?
>
> Thanks
>
> Rick
>
>
> -----Original Message-----
> From: Bill Lorensen [mailto:bill.lorensen at gmail.com]
> Sent: Sunday, November 01, 2015 11:32 AM
> To: Richard Frank
> Cc: insight-users at itk.org
> Subject: Re: [ITK-users] ItkVtkglue and VTK OpenGL2
>
> There is no itkVtkGlue.cmake file that I can find. Can you show me what you are doing? Are you building wiki examples locally, as a remote module. Or are you just trying to build ITK with the glue stuff enabled?
>
> Bill
>
>
> On Sat, Oct 31, 2015 at 1:02 PM, Richard Frank <rfrank at dominionsw.com> wrote:
>>
>> Hi,
>>
>> Any further developments on this? If there's a patch I can apply I
>> would like to try it.
>> Would like to have the OpenGL 2 support for an application using the
>> vtkITK bridge.
>>
>>
>> Thanks,
>>
>> Rick
>>
>>
>> Date: Thu, 29 Oct 2015 18:32:49 -0400
>> From: Bill Lorensen <bill.lorensen at gmail.com>
>> To: Richard Frank <rfrank at dominionsw.com>
>> Cc: Insight-Users <insight-users at itk.org>
>> Subject: Re: [ITK-users] ItkVtkglue and VTK OpenGL2?
>> Message-ID:
>>
>> <CADZJ4hOEgyk=CTo_+dg9=HAvEmrmAY7tFE6xnrCwij2LHGrnnQ at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> I'll check into this.
>>
>> On Oct 29, 2015 6:31 PM, "Richard Frank" <rfrank at dominionsw.com> wrote:
>>
>>
>> It seems that in itkVtkGlue.cmake CMake is looking for
>> vtkRenderingOpenGL
>>
>> which isn't available with OpenGL2 flags turned on for CMake.
>>
>>
>> Is this a problem with the Cmake file or did I forget to check or
>> uncheck
>>
>> something?
>>
>> Rick Frank
>>
>> Sent from my iPad
>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com



-- 
Unpaid intern in BillsBasement at noware dot com
_____________________________________
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From bakkari.abdelkhalek at hotmail.fr  Sun Nov  1 17:00:25 2015
From: bakkari.abdelkhalek at hotmail.fr (Abdelkhalek Bakkari)
Date: Sun, 1 Nov 2015 23:00:25 +0100
Subject: [ITK] Automatic Window/Level
Message-ID: <DUB129-W31DB518C2B3A750F99DB82832D0@phx.gbl>

Hi,
I  need here an automatic window/level algorithm. Something that makes Window min max and Level Min Max related to the image infomation.I tried to understand the Window/Level in ImageJ  And you will notice something interstingonce you move the Window level the value of Level changes and also the minimum and maximum changes too.
Best regards, 		 	   		  
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From rfrank at dominionsw.com  Sun Nov  1 17:17:29 2015
From: rfrank at dominionsw.com (Richard Frank)
Date: Sun, 1 Nov 2015 22:17:29 +0000
Subject: [ITK] [ITK-users] ItkVtkglue and VTK OpenGL2
In-Reply-To: <CADZJ4hPr04ksLwzX8GC+o2C3txRN+U--323uM2_yXX0vErpWYQ@mail.gmail.com>
References: <3DEFA5A8-871A-493C-A328-5D3664D8566E@dominionsw.com>
 <CADZJ4hNEy4EoDXxs8dsdbLyzXYrOh5r4+Qh4p--MGW7XQSKr7Q@mail.gmail.com>
 <616BE53F43DE0848B1810A093098277E658E1D5E@S11MAILD032N2.sh11.lan>,
 <CADZJ4hPr04ksLwzX8GC+o2C3txRN+U--323uM2_yXX0vErpWYQ@mail.gmail.com>
Message-ID: <9FDD55EF-CADE-455A-8EFE-620B8020464E@dominionsw.com>

Ok I'll put something together 

Thanks 

Rick Frank

> On Nov 1, 2015, at 3:39 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> 
> So this does not sound like a  itkVtkGlue issue but rather a VTK issue?
> 
> If you have a small, complete compilable example with a cmake file
> that illustrates the problem I might be able to help.
> 
>> On Sun, Nov 1, 2015 at 2:42 PM, Richard Frank <rfrank at dominionsw.com> wrote:
>> Hi Bill
>> 
>> Thanks for checking into this.
>> 
>> I am building Qt5.5.0 VTK6.3.0 and ITK4.8.1
>> I think my issue has something to do with not having the right flags set when building VTK or.....
>> VTK OpenGL2 doesn't support QVTKWidget2 perhaps.
>> 
>> I tossed everything and rebuilt using on VTK
>> 
>> Module_vtkRenderingContextOpenGL2 on
>> Module_vtkR.........LICOpenGL2 on
>> Module_vtkR.......OpenGL2 on
>> Module_vtkR........Qt on
>> Module_vtkR.......VolumentOpenGL2 on.
>> 
>> This built fine with the itkVtkGlue on in ITK4.8.1.
>> 
>> But when I run my application I get
>> "The program can't start because vtkGUISupportQtOpenGL-6.5.dll is missing."   (it wasn't built)
>> 
>> However if I turn that on in CMake I believe (I'll have to rebuild to try again) it  tells me that I can't have them openGL and openGL2 both on......
>> Or something and if I turn it off I think I run into the problem I mentioned.
>> 
>> I guess does OpenGL2 work with QT via VTK? If it does then what settings am I messing up?
>> 
>> Thanks
>> 
>> Rick
>> 
>> 
>> -----Original Message-----
>> From: Bill Lorensen [mailto:bill.lorensen at gmail.com]
>> Sent: Sunday, November 01, 2015 11:32 AM
>> To: Richard Frank
>> Cc: insight-users at itk.org
>> Subject: Re: [ITK-users] ItkVtkglue and VTK OpenGL2
>> 
>> There is no itkVtkGlue.cmake file that I can find. Can you show me what you are doing? Are you building wiki examples locally, as a remote module. Or are you just trying to build ITK with the glue stuff enabled?
>> 
>> Bill
>> 
>> 
>>> On Sat, Oct 31, 2015 at 1:02 PM, Richard Frank <rfrank at dominionsw.com> wrote:
>>> 
>>> Hi,
>>> 
>>> Any further developments on this? If there's a patch I can apply I
>>> would like to try it.
>>> Would like to have the OpenGL 2 support for an application using the
>>> vtkITK bridge.
>>> 
>>> 
>>> Thanks,
>>> 
>>> Rick
>>> 
>>> 
>>> Date: Thu, 29 Oct 2015 18:32:49 -0400
>>> From: Bill Lorensen <bill.lorensen at gmail.com>
>>> To: Richard Frank <rfrank at dominionsw.com>
>>> Cc: Insight-Users <insight-users at itk.org>
>>> Subject: Re: [ITK-users] ItkVtkglue and VTK OpenGL2?
>>> Message-ID:
>>> 
>>> <CADZJ4hOEgyk=CTo_+dg9=HAvEmrmAY7tFE6xnrCwij2LHGrnnQ at mail.gmail.com>
>>> Content-Type: text/plain; charset="utf-8"
>>> 
>>> I'll check into this.
>>> 
>>> On Oct 29, 2015 6:31 PM, "Richard Frank" <rfrank at dominionsw.com> wrote:
>>> 
>>> 
>>> It seems that in itkVtkGlue.cmake CMake is looking for
>>> vtkRenderingOpenGL
>>> 
>>> which isn't available with OpenGL2 flags turned on for CMake.
>>> 
>>> 
>>> Is this a problem with the Cmake file or did I forget to check or
>>> uncheck
>>> 
>>> something?
>>> 
>>> Rick Frank
>>> 
>>> Sent from my iPad
>> 
>> 
>> 
>> --
>> Unpaid intern in BillsBasement at noware dot com
> 
> 
> 
> -- 
> Unpaid intern in BillsBasement at noware dot com
_____________________________________
Powered by www.kitware.com

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Kitware offers ITK Training Courses, for more information visit:
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From rfrank at dominionsw.com  Sun Nov  1 22:15:59 2015
From: rfrank at dominionsw.com (Richard Frank)
Date: Mon, 2 Nov 2015 03:15:59 +0000
Subject: [ITK] [ITK-users] ItkVtkglue and VTK OpenGL2
In-Reply-To: <CADZJ4hPr04ksLwzX8GC+o2C3txRN+U--323uM2_yXX0vErpWYQ@mail.gmail.com>
References: <3DEFA5A8-871A-493C-A328-5D3664D8566E@dominionsw.com>
 <CADZJ4hNEy4EoDXxs8dsdbLyzXYrOh5r4+Qh4p--MGW7XQSKr7Q@mail.gmail.com>
 <616BE53F43DE0848B1810A093098277E658E1D5E@S11MAILD032N2.sh11.lan>
 <CADZJ4hPr04ksLwzX8GC+o2C3txRN+U--323uM2_yXX0vErpWYQ@mail.gmail.com>
Message-ID: <616BE53F43DE0848B1810A093098277E658E270A@S11MAILD032N2.sh11.lan>

Hi Bill,

I made a small project and of course that worked. I rebuilt my project from scratch and now that works. 
And I don't know what I did differently. 

:>/

Sorry about that...


However, I can now run but I hit this issue now that it's running

https://gitlab.kitware.com/vtk/vtk/merge_requests/638/diffs

So I guess I'll have to pull from git and see how well we work with the OpenGL2 that's the latest code.

Thanks

Rick

-----Original Message-----
From: Bill Lorensen [mailto:bill.lorensen at gmail.com] 
Sent: Sunday, November 01, 2015 3:39 PM
To: Richard Frank
Cc: insight-users at itk.org
Subject: Re: [ITK-users] ItkVtkglue and VTK OpenGL2

So this does not sound like a  itkVtkGlue issue but rather a VTK issue?

If you have a small, complete compilable example with a cmake file that illustrates the problem I might be able to help.

On Sun, Nov 1, 2015 at 2:42 PM, Richard Frank <rfrank at dominionsw.com> wrote:
> Hi Bill
>
> Thanks for checking into this.
>
> I am building Qt5.5.0 VTK6.3.0 and ITK4.8.1 I think my issue has 
> something to do with not having the right flags set when building VTK or.....
> VTK OpenGL2 doesn't support QVTKWidget2 perhaps.
>
> I tossed everything and rebuilt using on VTK
>
> Module_vtkRenderingContextOpenGL2 on
> Module_vtkR.........LICOpenGL2 on
> Module_vtkR.......OpenGL2 on
> Module_vtkR........Qt on
> Module_vtkR.......VolumentOpenGL2 on.
>
> This built fine with the itkVtkGlue on in ITK4.8.1.
>
> But when I run my application I get
> "The program can't start because vtkGUISupportQtOpenGL-6.5.dll is missing."   (it wasn't built)
>
> However if I turn that on in CMake I believe (I'll have to rebuild to try again) it  tells me that I can't have them openGL and openGL2 both on......
> Or something and if I turn it off I think I run into the problem I mentioned.
>
> I guess does OpenGL2 work with QT via VTK? If it does then what settings am I messing up?
>
> Thanks
>
> Rick
>
>
> -----Original Message-----
> From: Bill Lorensen [mailto:bill.lorensen at gmail.com]
> Sent: Sunday, November 01, 2015 11:32 AM
> To: Richard Frank
> Cc: insight-users at itk.org
> Subject: Re: [ITK-users] ItkVtkglue and VTK OpenGL2
>
> There is no itkVtkGlue.cmake file that I can find. Can you show me what you are doing? Are you building wiki examples locally, as a remote module. Or are you just trying to build ITK with the glue stuff enabled?
>
> Bill
>
>
> On Sat, Oct 31, 2015 at 1:02 PM, Richard Frank <rfrank at dominionsw.com> wrote:
>>
>> Hi,
>>
>> Any further developments on this? If there's a patch I can apply I 
>> would like to try it.
>> Would like to have the OpenGL 2 support for an application using the 
>> vtkITK bridge.
>>
>>
>> Thanks,
>>
>> Rick
>>
>>
>> Date: Thu, 29 Oct 2015 18:32:49 -0400
>> From: Bill Lorensen <bill.lorensen at gmail.com>
>> To: Richard Frank <rfrank at dominionsw.com>
>> Cc: Insight-Users <insight-users at itk.org>
>> Subject: Re: [ITK-users] ItkVtkglue and VTK OpenGL2?
>> Message-ID:
>>
>> <CADZJ4hOEgyk=CTo_+dg9=HAvEmrmAY7tFE6xnrCwij2LHGrnnQ at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> I'll check into this.
>>
>> On Oct 29, 2015 6:31 PM, "Richard Frank" <rfrank at dominionsw.com> wrote:
>>
>>
>> It seems that in itkVtkGlue.cmake CMake is looking for 
>> vtkRenderingOpenGL
>>
>> which isn't available with OpenGL2 flags turned on for CMake.
>>
>>
>> Is this a problem with the Cmake file or did I forget to check or 
>> uncheck
>>
>> something?
>>
>> Rick Frank
>>
>> Sent from my iPad
>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com



--
Unpaid intern in BillsBasement at noware dot com
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
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Please keep messages on-topic and check the ITK FAQ at:
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From phnhung98 at gmail.com  Mon Nov  2 04:41:20 2015
From: phnhung98 at gmail.com (nhungpham)
Date: Mon, 2 Nov 2015 02:41:20 -0700 (MST)
Subject: [ITK] [ITK-users] Buffered region of size [0, 0, 0]
In-Reply-To: <CAM_gOLNe=vQSRnJ6G0Z_EfRBHsGsjg09JNLahez-REu=mWyiHA@mail.gmail.com>
References: <CAM_gOLNe=vQSRnJ6G0Z_EfRBHsGsjg09JNLahez-REu=mWyiHA@mail.gmail.com>
Message-ID: <1446457280978-7588113.post@n2.nabble.com>

Hello,

Have you found your solution for this error. I have similar error when I try
to use DemonsRegistrationFilter on a region of interest by using method 
filter->GetOutput()->SetRequestedRegion(smallregion);, and it throws this
exception:

itk::ExceptionObject (0020EBBC)
Location: "void __thiscall itk::MultiThreader::SingleMethodExecute(void)"
File: ..\..\..\..\..\src\Modules\Core\Common\src\itkMultiThreader.cxx
Line: 416
Description: itk::ERROR: MultiThreader(067680C8): Exception occurred during
Sing
leMethodExecute
c:\itk\src\modules\core\common\include\itkImageConstIterator.h:211:
itk::ERROR: Region ImageRegion (0020E998)
  Dimension: 2
  Index: [208, 210]
  Size: [34, 8]
 is outside of buffered region ImageRegion (06758724)
  Dimension: 2
  Index: [210, 210]
  Size: [30, 30]



--
View this message in context: http://itk-insight-users.2283740.n2.nabble.com/ITK-users-Buffered-region-of-size-0-0-0-tp7587225p7588113.html
Sent from the ITK Insight Users mailing list archive at Nabble.com.
_____________________________________
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Kitware offers ITK Training Courses, for more information visit:
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From dzenanz at gmail.com  Mon Nov  2 09:09:07 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Mon, 2 Nov 2015 09:09:07 -0500
Subject: [ITK] Automatic Window/Level
In-Reply-To: <DUB129-W31DB518C2B3A750F99DB82832D0@phx.gbl>
References: <DUB129-W31DB518C2B3A750F99DB82832D0@phx.gbl>
Message-ID: <CAPf2UMQireUyMjWhLY3KHy_RED2AOLfRLi7-BMqWP3oQ4eqyrg@mail.gmail.com>

Hi Abdelkhalek,

maybe you can take a look at Slicer's volumes module (docs
<http://www.slicer.org/slicerWiki/index.php/Documentation/4.4/Modules/Volumes>,
source
<https://github.com/Slicer/Slicer/tree/master/Modules/Loadable/Volumes>).
It has an auto window/level function.

Regards

On Sun, Nov 1, 2015 at 5:00 PM, Abdelkhalek Bakkari <
bakkari.abdelkhalek at hotmail.fr> wrote:

> Hi,
>
> I  need here an automatic window/level algorithm. Something that makes
> Window min max and Level Min Max related to the image infomation.
> I tried to understand the Window/Level in ImageJ  And you will notice
> something intersting
> once you move the Window level the value of Level changes and also the
> minimum and maximum changes too.
>
> Best regards,
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
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From matt.mccormick at kitware.com  Mon Nov  2 09:23:45 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 2 Nov 2015 09:23:45 -0500
Subject: [ITK] Automatic Window/Level
In-Reply-To: <CAPf2UMQireUyMjWhLY3KHy_RED2AOLfRLi7-BMqWP3oQ4eqyrg@mail.gmail.com>
References: <DUB129-W31DB518C2B3A750F99DB82832D0@phx.gbl>
 <CAPf2UMQireUyMjWhLY3KHy_RED2AOLfRLi7-BMqWP3oQ4eqyrg@mail.gmail.com>
Message-ID: <CALzTN-RHTo4C44SiL63KxitoOhDmmX_wrd9xV-z1CoobpKPPgw@mail.gmail.com>

Hi Abdelkhalek,

The RescaleIntesityImageFilter will rescale image intensities based on
the image's minimum and maximum values and the range of output values.

HTH,
Matt

 [1] http://www.itk.org/Doxygen/html/classitk_1_1RescaleIntensityImageFilter.html

On Mon, Nov 2, 2015 at 9:09 AM, D?enan Zuki? <dzenanz at gmail.com> wrote:
> Hi Abdelkhalek,
>
> maybe you can take a look at Slicer's volumes module (docs, source). It has
> an auto window/level function.
>
> Regards
>
> On Sun, Nov 1, 2015 at 5:00 PM, Abdelkhalek Bakkari
> <bakkari.abdelkhalek at hotmail.fr> wrote:
>>
>> Hi,
>>
>> I  need here an automatic window/level algorithm. Something that makes
>> Window min max and Level Min Max related to the image infomation.
>> I tried to understand the Window/Level in ImageJ  And you will notice
>> something intersting
>> once you move the Window level the value of Level changes and also the
>> minimum and maximum changes too.
>>
>> Best regards,
>>
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>>
>
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>

From p.zaffino at yahoo.it  Mon Nov  2 09:30:21 2015
From: p.zaffino at yahoo.it (Paolo Zaffino)
Date: Mon, 2 Nov 2015 15:30:21 +0100
Subject: [ITK] [ITK-dev] HessianToObjectnessMeasureImageFilter in SimpleITK
Message-ID: <5637737D.5050202@yahoo.it>

Dear all,
I am interesting in having HessianToObjectnessMeasureImageFilter into 
SimpleITK.
As far as I know, it is not currently wrapped and for this reason I was 
thinking to do it by myself.

I am not so expert, so please apologize me if I say something wrong.
Let's use HausdorffDistanceImageFilter as example.

As far as I understood, the file 
"SimpleITK/Code/BasicFilters/json/HausdorffDistanceImageFilter.json" 
contains all the wrapping stuff.
My question is: do I have just to write something like that file for the 
HessianToObjectnessMeasureImageFilter, or something more is needed?

Thank you very much.
Best regards.

Paolo

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_______________________________________________
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From bill.lorensen at gmail.com  Mon Nov  2 11:03:06 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Mon, 2 Nov 2015 11:03:06 -0500
Subject: [ITK] [ITK-dev]   Clang compile error
In-Reply-To: <CADZJ4hPQ7vX69m9Eq5_Gwe6MY85+wsS05g2dyjtH7vLX_6q73Q@mail.gmail.com>
References: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
 <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>
 <CADZJ4hPQ7vX69m9Eq5_Gwe6MY85+wsS05g2dyjtH7vLX_6q73Q@mail.gmail.com>
Message-ID: <CADZJ4hO==U_RUHTw4D2jPbkOSC7FvpVzoG=p=8aSMzT2em8OZw@mail.gmail.com>

Matt,

Any ideas?

Bill

On Sun, Nov 1, 2015 at 3:03 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> OSX 10.7.5
>
> Apple clang version 3.0 (tags/Apple/clang-211.12) (based on LLVM 3.0svn)
> Target: x86_64-apple-darwin11.4.2
> Thread model: posix
>
>
> On Sun, Nov 1, 2015 at 2:15 PM, Matt McCormick
> <matt.mccormick at kitware.com> wrote:
>> Hi Bill,
>>
>> What is the OSX / Clang / Xcode version?
>>
>> Thanks,
>> Matt
>>
>> On Sun, Nov 1, 2015 at 11:21 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>> On my Mac clang build I get this:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
>>> error: cannot initialize a parameter of type
>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>     return __sync_add_and_fetch(ref, 1);
>>>                                 ^~~
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
>>> note: in instantiation of member function
>>>       'itk::Detail::AtomicOps<8>::PreIncrement' requested here
>>>     return static_cast<T>(Impl::PreIncrement(&this->m_Object));
>>>                                 ^
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
>>> note: in instantiation of member function
>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>     idx = ++TotalAtomic64;
>>>           ^
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
>>> error: cannot initialize a parameter of type
>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>     return __sync_sub_and_fetch(ref, 1);
>>>                                 ^~~
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
>>> note: in instantiation of member function
>>>       'itk::Detail::AtomicOps<8>::PreDecrement' requested here
>>>     return static_cast<T>(Impl::PreDecrement(&this->m_Object));
>>>                                 ^
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
>>> note: in instantiation of member function
>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>     --TotalAtomic64;
>>>     ^
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
>>> error: cannot initialize a parameter of type
>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>     return __sync_add_and_fetch(ref, val);
>>>                                 ^~~
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
>>> note: in instantiation of member function
>>>       'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
>>>     return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
>>>                                 ^
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
>>> note: in instantiation of member function
>>>       'itk::AtomicInt<unsigned long long>::operator+=' requested here
>>>     idx = TotalAtomic64 += 1;
>>>                         ^
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
>>> error: cannot initialize a parameter of type
>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>     return __sync_fetch_and_add(ref, 1);
>>>                                 ^~~
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
>>> note: in instantiation of member function
>>>       'itk::Detail::AtomicOps<8>::PostIncrement' requested here
>>>     return static_cast<T>(Impl::PostIncrement(&this->m_Object));
>>>                                 ^
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
>>> note: in instantiation of member function
>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>     TotalAtomic64++;
>>>                  ^
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
>>> error: cannot initialize a parameter of type
>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>     return __sync_fetch_and_sub(ref, 1);
>>>                                 ^~~
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
>>> note: in instantiation of member function
>>>       'itk::Detail::AtomicOps<8>::PostDecrement' requested here
>>>     return static_cast<T>(Impl::PostDecrement(&this->m_Object));
>>>                                 ^
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
>>> note: in instantiation of member function
>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>     TotalAtomic64--;
>>>                  ^
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>> In file included from
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
>>> error: cannot initialize a parameter of type
>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>     return __sync_sub_and_fetch(ref, val);
>>>                                 ^~~
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
>>> note: in instantiation of member function
>>>       'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
>>>     return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
>>>                                 ^
>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
>>> note: in instantiation of member function
>>>       'itk::AtomicInt<unsigned long long>::operator-=' requested here
>>>     TotalAtomic64 -= 1;
>>>                   ^
>>> 6 errors generated.
>>> make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
>>> Error 1
>>> make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
>>> Error 2
>>> make: *** [all] Error 2
>>> [ITK-clang]
>>> _______________________________________________
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://kitware.com/products/protraining.php
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>> _______________________________________________
>>> Community mailing list
>>> Community at itk.org
>>> http://public.kitware.com/mailman/listinfo/community
>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com



-- 
Unpaid intern in BillsBasement at noware dot com
_______________________________________________
Powered by www.kitware.com

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From matt.mccormick at kitware.com  Mon Nov  2 11:10:08 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 2 Nov 2015 11:10:08 -0500
Subject: [ITK] [ITK-users] Segmentation fault when trying to generate a
 BSpline transform from a set of matching landmarks
In-Reply-To: <CAHa3=2kYemTOMua1BHkXpNNRiqPanfFd6WUU3poE+eGdn8ahAg@mail.gmail.com>
References: <CAHa3=2kYemTOMua1BHkXpNNRiqPanfFd6WUU3poE+eGdn8ahAg@mail.gmail.com>
Message-ID: <CALzTN-R8kkctx8NmKJVEtaNEOU61TPCeFpAFO58Zs5RsCN_WPw@mail.gmail.com>

Hi Carlos,

There have been some improvements to the
LandmarkBasedTransformInitializer recently, so could you please try
with Git master [1]?

If the issue remains, could you please share a short, self-contained,
compilable example?

Thanks,
Matt

[1] http://www.itk.org/Wiki/ITK/Git

[2] http://www.sscce.org/

On Thu, Oct 29, 2015 at 9:12 AM, Carlos Henrique Villa Pinto
<chvillap at gmail.com> wrote:
> Hi, everyone.
>
> I have two sets of landmark points, detected from two different 3D MR
> images, and I'm trying to estimate a nonlinear mapping between the pairs of
> matching landmarks. I already have the matchings, I just need to generate a
> BSpline transform from them. The LandmarkBasedTransformInitializer class
> seems perfect for that, but when I call its InitializeTransform() method
> (after setting all the required input parameters), the result is a
> segmentation fault.
>
> I'm using ITK 4.8.0. I checked the source code and made some tests, but the
> only thing that I could find out is that the problem happens in the
> GenerateData() method of the BSplineScatteredDataPointSetToImageFilter
> class, when the SingleMethodExecute() method is called by the
> ThreadGenerator object. In such version of ITK, that happens in line 314 of
> the file BSplineScatteredDataPointSetToImageFilter.hxx. I couldn't go
> further because I have no clue of what exactly is being called by the
> ThreaderCallback in that class.
>
> Does anyone have any clue about what sort of things could cause a
> segmentation fault in the BSplineScatteredDataPointSetToImageFilter class?
> Could that be a bug, maybe?
>
> I don't know if this information is relevant, but my images have both LPI
> orientation, origin = (-127.5, -127.5, -127.5) and spacing = 2 x 2 x 2 mm.
> And I'm using the SetReferenceImage() method of the
> LandmarkBasedTransformInitializer class to define the parametric domain of
> the BSpline transform.
>
> I can provide some pieces of code and more information about my data if
> needed.
>
> Thanks in advance!
>
> []s
>
> --
> Carlos Henrique Villa Pinto
> Graduate Student in Computer Science
> Federal University of S?o Carlos - Brazil
> XCS
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From bill.lorensen at gmail.com  Mon Nov  2 11:11:22 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Mon, 2 Nov 2015 11:11:22 -0500
Subject: [ITK] [ITK-dev]   Clang compile error
In-Reply-To: <CADZJ4hO==U_RUHTw4D2jPbkOSC7FvpVzoG=p=8aSMzT2em8OZw@mail.gmail.com>
References: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
 <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>
 <CADZJ4hPQ7vX69m9Eq5_Gwe6MY85+wsS05g2dyjtH7vLX_6q73Q@mail.gmail.com>
 <CADZJ4hO==U_RUHTw4D2jPbkOSC7FvpVzoG=p=8aSMzT2em8OZw@mail.gmail.com>
Message-ID: <CADZJ4hOs=1W1r1ftZ8HfqHV-mg+nVE6ugi0a5EbrbNYPfcNQgQ@mail.gmail.com>

Matt,

I just did an update and it seems the issue is gone.

On Mon, Nov 2, 2015 at 11:03 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> Matt,
>
> Any ideas?
>
> Bill
>
> On Sun, Nov 1, 2015 at 3:03 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>> OSX 10.7.5
>>
>> Apple clang version 3.0 (tags/Apple/clang-211.12) (based on LLVM 3.0svn)
>> Target: x86_64-apple-darwin11.4.2
>> Thread model: posix
>>
>>
>> On Sun, Nov 1, 2015 at 2:15 PM, Matt McCormick
>> <matt.mccormick at kitware.com> wrote:
>>> Hi Bill,
>>>
>>> What is the OSX / Clang / Xcode version?
>>>
>>> Thanks,
>>> Matt
>>>
>>> On Sun, Nov 1, 2015 at 11:21 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>>> On my Mac clang build I get this:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
>>>> error: cannot initialize a parameter of type
>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>     return __sync_add_and_fetch(ref, 1);
>>>>                                 ^~~
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
>>>> note: in instantiation of member function
>>>>       'itk::Detail::AtomicOps<8>::PreIncrement' requested here
>>>>     return static_cast<T>(Impl::PreIncrement(&this->m_Object));
>>>>                                 ^
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
>>>> note: in instantiation of member function
>>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>>     idx = ++TotalAtomic64;
>>>>           ^
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
>>>> error: cannot initialize a parameter of type
>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>     return __sync_sub_and_fetch(ref, 1);
>>>>                                 ^~~
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
>>>> note: in instantiation of member function
>>>>       'itk::Detail::AtomicOps<8>::PreDecrement' requested here
>>>>     return static_cast<T>(Impl::PreDecrement(&this->m_Object));
>>>>                                 ^
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
>>>> note: in instantiation of member function
>>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>>     --TotalAtomic64;
>>>>     ^
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
>>>> error: cannot initialize a parameter of type
>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>     return __sync_add_and_fetch(ref, val);
>>>>                                 ^~~
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
>>>> note: in instantiation of member function
>>>>       'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
>>>>     return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
>>>>                                 ^
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
>>>> note: in instantiation of member function
>>>>       'itk::AtomicInt<unsigned long long>::operator+=' requested here
>>>>     idx = TotalAtomic64 += 1;
>>>>                         ^
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
>>>> error: cannot initialize a parameter of type
>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>     return __sync_fetch_and_add(ref, 1);
>>>>                                 ^~~
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
>>>> note: in instantiation of member function
>>>>       'itk::Detail::AtomicOps<8>::PostIncrement' requested here
>>>>     return static_cast<T>(Impl::PostIncrement(&this->m_Object));
>>>>                                 ^
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
>>>> note: in instantiation of member function
>>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>>     TotalAtomic64++;
>>>>                  ^
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
>>>> error: cannot initialize a parameter of type
>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>     return __sync_fetch_and_sub(ref, 1);
>>>>                                 ^~~
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
>>>> note: in instantiation of member function
>>>>       'itk::Detail::AtomicOps<8>::PostDecrement' requested here
>>>>     return static_cast<T>(Impl::PostDecrement(&this->m_Object));
>>>>                                 ^
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
>>>> note: in instantiation of member function
>>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>>     TotalAtomic64--;
>>>>                  ^
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>> In file included from
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
>>>> error: cannot initialize a parameter of type
>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>     return __sync_sub_and_fetch(ref, val);
>>>>                                 ^~~
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
>>>> note: in instantiation of member function
>>>>       'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
>>>>     return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
>>>>                                 ^
>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
>>>> note: in instantiation of member function
>>>>       'itk::AtomicInt<unsigned long long>::operator-=' requested here
>>>>     TotalAtomic64 -= 1;
>>>>                   ^
>>>> 6 errors generated.
>>>> make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
>>>> Error 1
>>>> make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
>>>> Error 2
>>>> make: *** [all] Error 2
>>>> [ITK-clang]
>>>> _______________________________________________
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>> http://kitware.com/products/protraining.php
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>> _______________________________________________
>>>> Community mailing list
>>>> Community at itk.org
>>>> http://public.kitware.com/mailman/listinfo/community
>>
>>
>>
>> --
>> Unpaid intern in BillsBasement at noware dot com
>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com



-- 
Unpaid intern in BillsBasement at noware dot com
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
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From matt.mccormick at kitware.com  Mon Nov  2 11:12:13 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 2 Nov 2015 11:12:13 -0500
Subject: [ITK] [ITK-dev]   Clang compile error
In-Reply-To: <CADZJ4hOs=1W1r1ftZ8HfqHV-mg+nVE6ugi0a5EbrbNYPfcNQgQ@mail.gmail.com>
References: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
 <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>
 <CADZJ4hPQ7vX69m9Eq5_Gwe6MY85+wsS05g2dyjtH7vLX_6q73Q@mail.gmail.com>
 <CADZJ4hO==U_RUHTw4D2jPbkOSC7FvpVzoG=p=8aSMzT2em8OZw@mail.gmail.com>
 <CADZJ4hOs=1W1r1ftZ8HfqHV-mg+nVE6ugi0a5EbrbNYPfcNQgQ@mail.gmail.com>
Message-ID: <CALzTN-T4QnZJxG6hf25ZGLP86V1QuK-wco3jU2X+X4V=jcSOgg@mail.gmail.com>

Bill,

Thanks for the update.  Yes, that code has been there for a while, and
the error was not familiar.

Thanks,
Matt

On Mon, Nov 2, 2015 at 11:11 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> Matt,
>
> I just did an update and it seems the issue is gone.
>
> On Mon, Nov 2, 2015 at 11:03 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>> Matt,
>>
>> Any ideas?
>>
>> Bill
>>
>> On Sun, Nov 1, 2015 at 3:03 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>> OSX 10.7.5
>>>
>>> Apple clang version 3.0 (tags/Apple/clang-211.12) (based on LLVM 3.0svn)
>>> Target: x86_64-apple-darwin11.4.2
>>> Thread model: posix
>>>
>>>
>>> On Sun, Nov 1, 2015 at 2:15 PM, Matt McCormick
>>> <matt.mccormick at kitware.com> wrote:
>>>> Hi Bill,
>>>>
>>>> What is the OSX / Clang / Xcode version?
>>>>
>>>> Thanks,
>>>> Matt
>>>>
>>>> On Sun, Nov 1, 2015 at 11:21 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>>>> On my Mac clang build I get this:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
>>>>> error: cannot initialize a parameter of type
>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>     return __sync_add_and_fetch(ref, 1);
>>>>>                                 ^~~
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
>>>>> note: in instantiation of member function
>>>>>       'itk::Detail::AtomicOps<8>::PreIncrement' requested here
>>>>>     return static_cast<T>(Impl::PreIncrement(&this->m_Object));
>>>>>                                 ^
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
>>>>> note: in instantiation of member function
>>>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>>>     idx = ++TotalAtomic64;
>>>>>           ^
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
>>>>> error: cannot initialize a parameter of type
>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>     return __sync_sub_and_fetch(ref, 1);
>>>>>                                 ^~~
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
>>>>> note: in instantiation of member function
>>>>>       'itk::Detail::AtomicOps<8>::PreDecrement' requested here
>>>>>     return static_cast<T>(Impl::PreDecrement(&this->m_Object));
>>>>>                                 ^
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
>>>>> note: in instantiation of member function
>>>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>>>     --TotalAtomic64;
>>>>>     ^
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
>>>>> error: cannot initialize a parameter of type
>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>     return __sync_add_and_fetch(ref, val);
>>>>>                                 ^~~
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
>>>>> note: in instantiation of member function
>>>>>       'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
>>>>>     return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
>>>>>                                 ^
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
>>>>> note: in instantiation of member function
>>>>>       'itk::AtomicInt<unsigned long long>::operator+=' requested here
>>>>>     idx = TotalAtomic64 += 1;
>>>>>                         ^
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
>>>>> error: cannot initialize a parameter of type
>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>     return __sync_fetch_and_add(ref, 1);
>>>>>                                 ^~~
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
>>>>> note: in instantiation of member function
>>>>>       'itk::Detail::AtomicOps<8>::PostIncrement' requested here
>>>>>     return static_cast<T>(Impl::PostIncrement(&this->m_Object));
>>>>>                                 ^
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
>>>>> note: in instantiation of member function
>>>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>>>     TotalAtomic64++;
>>>>>                  ^
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
>>>>> error: cannot initialize a parameter of type
>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>     return __sync_fetch_and_sub(ref, 1);
>>>>>                                 ^~~
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
>>>>> note: in instantiation of member function
>>>>>       'itk::Detail::AtomicOps<8>::PostDecrement' requested here
>>>>>     return static_cast<T>(Impl::PostDecrement(&this->m_Object));
>>>>>                                 ^
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
>>>>> note: in instantiation of member function
>>>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>>>     TotalAtomic64--;
>>>>>                  ^
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>> In file included from
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
>>>>> error: cannot initialize a parameter of type
>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>     return __sync_sub_and_fetch(ref, val);
>>>>>                                 ^~~
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
>>>>> note: in instantiation of member function
>>>>>       'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
>>>>>     return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
>>>>>                                 ^
>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
>>>>> note: in instantiation of member function
>>>>>       'itk::AtomicInt<unsigned long long>::operator-=' requested here
>>>>>     TotalAtomic64 -= 1;
>>>>>                   ^
>>>>> 6 errors generated.
>>>>> make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
>>>>> Error 1
>>>>> make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
>>>>> Error 2
>>>>> make: *** [all] Error 2
>>>>> [ITK-clang]
>>>>> _______________________________________________
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>> http://kitware.com/products/protraining.php
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>> _______________________________________________
>>>>> Community mailing list
>>>>> Community at itk.org
>>>>> http://public.kitware.com/mailman/listinfo/community
>>>
>>>
>>>
>>> --
>>> Unpaid intern in BillsBasement at noware dot com
>>
>>
>>
>> --
>> Unpaid intern in BillsBasement at noware dot com
>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com
_______________________________________________
Powered by www.kitware.com

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From bill.lorensen at gmail.com  Mon Nov  2 11:15:04 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Mon, 2 Nov 2015 11:15:04 -0500
Subject: [ITK] [ITK-dev]   Clang compile error
In-Reply-To: <CALzTN-T4QnZJxG6hf25ZGLP86V1QuK-wco3jU2X+X4V=jcSOgg@mail.gmail.com>
References: <CADZJ4hNPQ2DLs-u0dKoZNT5o4b2+3hL7WXm0rEDKiPhDT53dAg@mail.gmail.com>
 <CALzTN-R+BX1eDz6kmwH5PT0idfVptDcqUbi4y+F=_JUCRLk30w@mail.gmail.com>
 <CADZJ4hPQ7vX69m9Eq5_Gwe6MY85+wsS05g2dyjtH7vLX_6q73Q@mail.gmail.com>
 <CADZJ4hO==U_RUHTw4D2jPbkOSC7FvpVzoG=p=8aSMzT2em8OZw@mail.gmail.com>
 <CADZJ4hOs=1W1r1ftZ8HfqHV-mg+nVE6ugi0a5EbrbNYPfcNQgQ@mail.gmail.com>
 <CALzTN-T4QnZJxG6hf25ZGLP86V1QuK-wco3jU2X+X4V=jcSOgg@mail.gmail.com>
Message-ID: <CADZJ4hO7XoTjkbT8Fwv1eR-rYym-SpFSkhkt8SWLQ1qPGmycFg@mail.gmail.com>

Matt,

I had not built with clang in a long time. I eventually rebuilt in a
clean directory. Maybe that fixed it.

Thanks,

Bill


On Mon, Nov 2, 2015 at 11:12 AM, Matt McCormick
<matt.mccormick at kitware.com> wrote:
> Bill,
>
> Thanks for the update.  Yes, that code has been there for a while, and
> the error was not familiar.
>
> Thanks,
> Matt
>
> On Mon, Nov 2, 2015 at 11:11 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>> Matt,
>>
>> I just did an update and it seems the issue is gone.
>>
>> On Mon, Nov 2, 2015 at 11:03 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>> Matt,
>>>
>>> Any ideas?
>>>
>>> Bill
>>>
>>> On Sun, Nov 1, 2015 at 3:03 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>>> OSX 10.7.5
>>>>
>>>> Apple clang version 3.0 (tags/Apple/clang-211.12) (based on LLVM 3.0svn)
>>>> Target: x86_64-apple-darwin11.4.2
>>>> Thread model: posix
>>>>
>>>>
>>>> On Sun, Nov 1, 2015 at 2:15 PM, Matt McCormick
>>>> <matt.mccormick at kitware.com> wrote:
>>>>> Hi Bill,
>>>>>
>>>>> What is the OSX / Clang / Xcode version?
>>>>>
>>>>> Thanks,
>>>>> Matt
>>>>>
>>>>> On Sun, Nov 1, 2015 at 11:21 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>>>>> On my Mac clang build I get this:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:90:33:
>>>>>> error: cannot initialize a parameter of type
>>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>>     return __sync_add_and_fetch(ref, 1);
>>>>>>                                 ^~~
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:93:33:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::Detail::AtomicOps<8>::PreIncrement' requested here
>>>>>>     return static_cast<T>(Impl::PreIncrement(&this->m_Object));
>>>>>>                                 ^
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:62:11:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>>>>     idx = ++TotalAtomic64;
>>>>>>           ^
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:95:33:
>>>>>> error: cannot initialize a parameter of type
>>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>>     return __sync_sub_and_fetch(ref, 1);
>>>>>>                                 ^~~
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:103:33:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::Detail::AtomicOps<8>::PreDecrement' requested here
>>>>>>     return static_cast<T>(Impl::PreDecrement(&this->m_Object));
>>>>>>                                 ^
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:77:5:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>>>>     --TotalAtomic64;
>>>>>>     ^
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:80:33:
>>>>>> error: cannot initialize a parameter of type
>>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>>     return __sync_add_and_fetch(ref, val);
>>>>>>                                 ^~~
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:113:33:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::Detail::AtomicOps<8>::AddAndFetch' requested here
>>>>>>     return static_cast<T>(Impl::AddAndFetch(&this->m_Object,
>>>>>>                                 ^
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:90:25:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::AtomicInt<unsigned long long>::operator+=' requested here
>>>>>>     idx = TotalAtomic64 += 1;
>>>>>>                         ^
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:100:33:
>>>>>> error: cannot initialize a parameter of type
>>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>>     return __sync_fetch_and_add(ref, 1);
>>>>>>                                 ^~~
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:98:33:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::Detail::AtomicOps<8>::PostIncrement' requested here
>>>>>>     return static_cast<T>(Impl::PostIncrement(&this->m_Object));
>>>>>>                                 ^
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:106:18:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::AtomicInt<unsigned long long>::operator++' requested here
>>>>>>     TotalAtomic64++;
>>>>>>                  ^
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:105:33:
>>>>>> error: cannot initialize a parameter of type
>>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>>     return __sync_fetch_and_sub(ref, 1);
>>>>>>                                 ^~~
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:108:33:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::Detail::AtomicOps<8>::PostDecrement' requested here
>>>>>>     return static_cast<T>(Impl::PostDecrement(&this->m_Object));
>>>>>>                                 ^
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:108:18:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::AtomicInt<unsigned long long>::operator--' requested here
>>>>>>     TotalAtomic64--;
>>>>>>                  ^
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:32:
>>>>>> In file included from
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:42:
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicIntDetail.h:85:33:
>>>>>> error: cannot initialize a parameter of type
>>>>>>       'volatile int *' with an lvalue of type 'ValueType *' (aka 'long long *')
>>>>>>     return __sync_sub_and_fetch(ref, val);
>>>>>>                                 ^~~
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/include/itkAtomicInt.h:119:33:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::Detail::AtomicOps<8>::SubAndFetch' requested here
>>>>>>     return static_cast<T>(Impl::SubAndFetch(&this->m_Object,
>>>>>>                                 ^
>>>>>> /Users/lorensen/ProjectsGIT/ITK/Modules/Core/Common/test/itkAtomicIntTest.cxx:109:19:
>>>>>> note: in instantiation of member function
>>>>>>       'itk::AtomicInt<unsigned long long>::operator-=' requested here
>>>>>>     TotalAtomic64 -= 1;
>>>>>>                   ^
>>>>>> 6 errors generated.
>>>>>> make[2]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/itkAtomicIntTest.cxx.o]
>>>>>> Error 1
>>>>>> make[1]: *** [Modules/Core/Common/test/CMakeFiles/ITKCommon2TestDriver.dir/all]
>>>>>> Error 2
>>>>>> make: *** [all] Error 2
>>>>>> [ITK-clang]
>>>>>> _______________________________________________
>>>>>> Powered by www.kitware.com
>>>>>>
>>>>>> Visit other Kitware open-source projects at
>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>
>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>> http://kitware.com/products/protraining.php
>>>>>>
>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>
>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>> _______________________________________________
>>>>>> Community mailing list
>>>>>> Community at itk.org
>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>
>>>>
>>>>
>>>> --
>>>> Unpaid intern in BillsBasement at noware dot com
>>>
>>>
>>>
>>> --
>>> Unpaid intern in BillsBasement at noware dot com
>>
>>
>>
>> --
>> Unpaid intern in BillsBasement at noware dot com



-- 
Unpaid intern in BillsBasement at noware dot com
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
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Kitware offers ITK Training Courses, for more information visit:
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From blowekamp at mail.nih.gov  Mon Nov  2 11:41:06 2015
From: blowekamp at mail.nih.gov (Bradley Lowekamp)
Date: Mon, 2 Nov 2015 11:41:06 -0500
Subject: [ITK] [ITK-dev] HessianToObjectnessMeasureImageFilter in
	SimpleITK
In-Reply-To: <5637737D.5050202@yahoo.it>
References: <5637737D.5050202@yahoo.it>
Message-ID: <284D40EA-D810-46DC-9B87-B0DD61DB99C6@mail.nih.gov>

Hello Paolo,

For many filters you are correct. You just need to write a json file which describes the filter's parameters and template parameters.

For the HessianToObjectnessMeasureImageFilter there is the difficulty is that Hessian pixel types aren't currently implemented in SimpleITK.

However this can be easily fixed by writing a little composite filter. A better interface for this operation is to have a scalar image as input, and the output be the feature measurement. This should be done as the composite filter which is wrapped.

Contribution to SimpleITK are welcomed. Please let us know if you need any further guidance.
Brad


On Nov 2, 2015, at 9:30 AM, Paolo Zaffino <p.zaffino at yahoo.it> wrote:

> Dear all,
> I am interesting in having HessianToObjectnessMeasureImageFilter into SimpleITK.
> As far as I know, it is not currently wrapped and for this reason I was thinking to do it by myself.
> 
> I am not so expert, so please apologize me if I say something wrong.
> Let's use HausdorffDistanceImageFilter as example.
> 
> As far as I understood, the file "SimpleITK/Code/BasicFilters/json/HausdorffDistanceImageFilter.json" contains all the wrapping stuff.
> My question is: do I have just to write something like that file for the HessianToObjectnessMeasureImageFilter, or something more is needed?
> 
> Thank you very much.
> Best regards.
> 
> Paolo
> 
> _______________________________________________
> Powered by www.kitware.com
> 
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
> 
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
> 
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
> 
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers

_______________________________________________
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Kitware offers ITK Training Courses, for more information visit:
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From p.zaffino at yahoo.it  Mon Nov  2 11:50:52 2015
From: p.zaffino at yahoo.it (Paolo Zaffino)
Date: Mon, 2 Nov 2015 17:50:52 +0100
Subject: [ITK] [ITK-dev] HessianToObjectnessMeasureImageFilter in
	SimpleITK
In-Reply-To: <284D40EA-D810-46DC-9B87-B0DD61DB99C6@mail.nih.gov>
References: <5637737D.5050202@yahoo.it>
 <284D40EA-D810-46DC-9B87-B0DD61DB99C6@mail.nih.gov>
Message-ID: <5637946C.4010204@yahoo.it>

Hi Brad,
do you have any examples of a composite filters?
What about instead of returning the final probability as scalar data 
(float/double)?

Thank you very much.
Best.

Paolo


On 02/11/2015 17:41, Bradley Lowekamp wrote:
> Hello Paolo,
>
> For many filters you are correct. You just need to write a json file which describes the filter's parameters and template parameters.
>
> For the HessianToObjectnessMeasureImageFilter there is the difficulty is that Hessian pixel types aren't currently implemented in SimpleITK.
>
> However this can be easily fixed by writing a little composite filter. A better interface for this operation is to have a scalar image as input, and the output be the feature measurement. This should be done as the composite filter which is wrapped.
>
> Contribution to SimpleITK are welcomed. Please let us know if you need any further guidance.
> Brad
>
>
> On Nov 2, 2015, at 9:30 AM, Paolo Zaffino <p.zaffino at yahoo.it> wrote:
>
>> Dear all,
>> I am interesting in having HessianToObjectnessMeasureImageFilter into SimpleITK.
>> As far as I know, it is not currently wrapped and for this reason I was thinking to do it by myself.
>>
>> I am not so expert, so please apologize me if I say something wrong.
>> Let's use HausdorffDistanceImageFilter as example.
>>
>> As far as I understood, the file "SimpleITK/Code/BasicFilters/json/HausdorffDistanceImageFilter.json" contains all the wrapping stuff.
>> My question is: do I have just to write something like that file for the HessianToObjectnessMeasureImageFilter, or something more is needed?
>>
>> Thank you very much.
>> Best regards.
>>
>> Paolo
>>
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>

_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

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From blowekamp at mail.nih.gov  Mon Nov  2 11:56:23 2015
From: blowekamp at mail.nih.gov (Bradley Lowekamp)
Date: Mon, 2 Nov 2015 11:56:23 -0500
Subject: [ITK] [ITK-dev] HessianToObjectnessMeasureImageFilter in
	SimpleITK
In-Reply-To: <5637946C.4010204@yahoo.it>
References: <5637737D.5050202@yahoo.it>
 <284D40EA-D810-46DC-9B87-B0DD61DB99C6@mail.nih.gov>
 <5637946C.4010204@yahoo.it>
Message-ID: <98464BDB-F1A6-4DB4-A754-BD70DADFC171@mail.nih.gov>

There is a book on it, now in freshly rendered HTML:

http://itk.org/ITKSoftwareGuide/html/Book1/ITKSoftwareGuide-Book1ch8.html

Brad

On Nov 2, 2015, at 11:50 AM, Paolo Zaffino <p.zaffino at yahoo.it> wrote:

> Hi Brad,
> do you have any examples of a composite filters?
> What about instead of returning the final probability as scalar data (float/double)?
> 
> Thank you very much.
> Best.
> 
> Paolo
> 
> 
> On 02/11/2015 17:41, Bradley Lowekamp wrote:
>> Hello Paolo,
>> 
>> For many filters you are correct. You just need to write a json file which describes the filter's parameters and template parameters.
>> 
>> For the HessianToObjectnessMeasureImageFilter there is the difficulty is that Hessian pixel types aren't currently implemented in SimpleITK.
>> 
>> However this can be easily fixed by writing a little composite filter. A better interface for this operation is to have a scalar image as input, and the output be the feature measurement. This should be done as the composite filter which is wrapped.
>> 
>> Contribution to SimpleITK are welcomed. Please let us know if you need any further guidance.
>> Brad
>> 
>> 
>> On Nov 2, 2015, at 9:30 AM, Paolo Zaffino <p.zaffino at yahoo.it> wrote:
>> 
>>> Dear all,
>>> I am interesting in having HessianToObjectnessMeasureImageFilter into SimpleITK.
>>> As far as I know, it is not currently wrapped and for this reason I was thinking to do it by myself.
>>> 
>>> I am not so expert, so please apologize me if I say something wrong.
>>> Let's use HausdorffDistanceImageFilter as example.
>>> 
>>> As far as I understood, the file "SimpleITK/Code/BasicFilters/json/HausdorffDistanceImageFilter.json" contains all the wrapping stuff.
>>> My question is: do I have just to write something like that file for the HessianToObjectnessMeasureImageFilter, or something more is needed?
>>> 
>>> Thank you very much.
>>> Best regards.
>>> 
>>> Paolo
>>> 
>>> _______________________________________________
>>> Powered by www.kitware.com
>>> 
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>> 
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://kitware.com/products/protraining.php
>>> 
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>> 
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/insight-developers
>> 
> 

_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From mike.jackson at bluequartz.net  Mon Nov  2 12:17:17 2015
From: mike.jackson at bluequartz.net (Michael Jackson)
Date: Mon, 2 Nov 2015 12:17:17 -0500
Subject: [ITK] [ITK-users]  Buffered Region out of Range error
In-Reply-To: <CALzTN-QvbYv6z6oNdOS6atmMntu8T3scug7Ja9vf8Nrs6k15Vw@mail.gmail.com>
References: <C1CA0247-EC76-4677-8679-6A2867C7ED59@bluequartz.net>
 <CALzTN-S-xzRugHCgP6KeEfM7HzjxLXE7ONOSsQ+kTCutUT4mxQ@mail.gmail.com>
 <9D1176BA-4865-45C9-B499-234F66922463@bluequartz.net>
 <17C498DE-21D8-4EE5-BCD9-85286B8B9E50@mail.nih.gov>
 <B517CAFD-A291-4213-B507-D00447853697@bluequartz.net>
 <5EA71915-616F-4FFD-91E8-26941201051C@mail.nih.gov>
 <29375C19-58B7-4A9A-9B6D-EF79D51A7691@bluequartz.net>
 <CF65FCD6-70C6-440B-A4A2-1F5D2D183AF6@bluequartz.net>
 <CALzTN-RwaPUD_KvJDptjfXr84oX_uY7ig2pC0mE=e+0jUr+OzQ@mail.gmail.com>
 <DE6F155B-2295-46BE-AB01-F0B04EB37DC0@bluequartz.net>
 <CALzTN-QyFafJ-yibz+B3Qs6Xf-1XMLbjOYVKREi4ssrQVS1yBA@mail.gmail.com>
 <454718DB-56FA-4AC3-B1CF-59964ED9523B@bluequartz.net>
 <7EFC0503-D75F-4E0D-94F9-42679FBFF090@bluequartz.net>
 <CALzTN-QvbYv6z6oNdOS6atmMntu8T3scug7Ja9vf8Nrs6k15Vw@mail.gmail.com>
Message-ID: <1A9507C2-C1A4-4D77-A6A2-EE79D111F578@bluequartz.net>

That did not seem to help either. Any more ideas? Does ITK build some intermediate static libraries that have ?managers? that load filters? I ran into an issue with our own code where we had static libraries with singleton ?manager? design patterns that turned out not to work due to each library getting its own singleton instance.
--
Mike Jackson  [mike.jackson at bluequartz.net]


> On Oct 30, 2015, at 4:07 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
> 
> Thanks for the information.
> 
> It is hard to tell, but maybe it is related to factory registration.
> To test, try this:
> 
> In the plugin CMake code, add
> 
>  set(ITK_NO_IO_FACTORY_REGISTER_MANAGER 1)
> 
> before
> 
>  include(${ITK_USE_FILE})
> 
> Then see if neither plugins work, both plugins work, and one of the
> plugins works.
> 
> HTH,
> Matt
> 
> On Fri, Oct 30, 2015 at 1:36 PM, Michael Jackson
> <mike.jackson at bluequartz.net> wrote:
>> Some more data. If we create an intermediate library that links to ITK, called ITKSupport, and then have our plugins link against ITKSupport then the code executes correctly. Just another data point.
>> --
>> Michael A. Jackson
>> BlueQuartz Software, LLC
>> [e]: mike.jackson at bluequartz.net
>> 
>>> On Oct 30, 2015, at 12:57 PM, Michael Jackson <mike.jackson at bluequartz.net> wrote:
>>> 
>>> Yes. Verified. Both plugins are built as part of DREAM.3D and we don?t put any extra CXX_FLAGS in any of the CMake files. We also built with VERBOSE=1 and looked at the compile commands to ensure that what we wanted was actually being used. Then we looked at the libraries themselves with otool -L to ensure they all link against libC++. Which they do.
>>> 
>>> 
>>> --
>>> Michael A. Jackson
>>> BlueQuartz Software, LLC
>>> [e]: mike.jackson at bluequartz.net
>>> 
>>>> On Oct 30, 2015, at 12:05 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>>> 
>>>> Hi Michael,
>>>> 
>>>> Sorry to be redundant, and just to be sure: are both A.plugin and
>>>> B.plugin built with the same C++ standard library, OSX deployment
>>>> target, and C++ standard?
>>>> 
>>>> Thanks,
>>>> Matt
>>>> 
>>>> On Fri, Oct 30, 2015 at 11:35 AM, Michael Jackson
>>>> <mike.jackson at bluequartz.net> wrote:
>>>>> 
>>>>> 
>>>>>> On Oct 29, 2015, at 11:40 AM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>>>>> 
>>>>>> On Thu, Oct 29, 2015 at 10:00 AM, Michael Jackson
>>>>>> <mike.jackson at bluequartz.net> wrote:
>>>>>>> We also ran an experiment where we moved the ITK Dependency from just the
>>>>>>> plugin down into one of our lower level libraries. So now we have the plugin
>>>>>>> dependent on a lower level library which then is dependent on the ITK
>>>>>>> Libraries. Now the code seems to execute and produce results. This was on OS
>>>>>>> X 10.9 and 10.10. So it seems that there is some odd issue with loading the
>>>>>>> ITK libraries through a plugin mechanism? Does ITK need the ?-fPIC? added to
>>>>>>> the list of compile commands?
>>>>>> 
>>>>>> If ITK is built in a plugin as shared libraries, then it will already
>>>>>> be built with -fPIC.
>>>>>> 
>>>>>> 
>>>>>>> Qt is actually built WITHOUT C++11 support but still links against libc++.
>>>>>>> They (the Qt Devs) set the OS X Min Deployment Version to 10.7. I have no
>>>>>>> idea what that triggers or not.
>>>>>> 
>>>>>> All code should be built with the same C++ standard and OSX deployment
>>>>>> target. When building ITK and related code, set
>>>>>> CMAKE_OSX_DEPLOYMENT_TARGET [1] to 10.7 to ensure all binaries are
>>>>>> using consistent libraries.
>>>>>> 
>>>>>> HTH,
>>>>>> Matt
>>>>>> 
>>>>>> [1] https://cmake.org/cmake/help/v3.3/variable/CMAKE_OSX_DEPLOYMENT_TARGET.html
>>>>> 
>>>>> Matt,
>>>>> We have verified that ALL dependent libraries are built with libC++, 10.7 as the min deployment, C++11 enabled. This goes for Boost, HDF5, Eigen, ITK, and Qt 5.5.1. We still have the issue. We can also reproduce that if we move the dependency to a lower level then the issue goes away. So it would seem that there is a problem with multiple plugins being dependent on the same External library. in this case it is ITK. I?ll try to diagram below.
>>>>> ## Failure Mode ##
>>>>> A.plugin depends on ITK
>>>>> A.plugin depends on SIMPlib.
>>>>> 
>>>>> B.plugin depends on ITK
>>>>> B.plugin depends on SIMPlib.
>>>>> 
>>>>> B.plugin will fail to execute properly.
>>>>> 
>>>>> ## Success Mode ##
>>>>> A.plugin depends on SIMPlib.
>>>>> SIMPlib depends on ITK
>>>>> 
>>>>> B.plugin depends on SIMPlib.
>>>>> SIMPlib depends on ITK
>>>>> 
>>>>> The DREAM.3D filters both execute properly and give the proper output.
>>>>> 
>>>>> --
>>>>> Michael A. Jackson
>>>>> BlueQuartz Software, LLC
>>>>> [e]: mike.jackson at bluequartz.net
>>>>> _____________________________________
>>>>> Powered by www.kitware.com
>>>>> 
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>> 
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>> http://www.kitware.com/products/protraining.php
>>>>> 
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>> 
>>>>> Follow this link to subscribe/unsubscribe:
>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>> 
>> 

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_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
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From matt.mccormick at kitware.com  Mon Nov  2 13:11:48 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 2 Nov 2015 13:11:48 -0500
Subject: [ITK] [ITK-users]  Buffered Region out of Range error
In-Reply-To: <1A9507C2-C1A4-4D77-A6A2-EE79D111F578@bluequartz.net>
References: <C1CA0247-EC76-4677-8679-6A2867C7ED59@bluequartz.net>
 <CALzTN-S-xzRugHCgP6KeEfM7HzjxLXE7ONOSsQ+kTCutUT4mxQ@mail.gmail.com>
 <9D1176BA-4865-45C9-B499-234F66922463@bluequartz.net>
 <17C498DE-21D8-4EE5-BCD9-85286B8B9E50@mail.nih.gov>
 <B517CAFD-A291-4213-B507-D00447853697@bluequartz.net>
 <5EA71915-616F-4FFD-91E8-26941201051C@mail.nih.gov>
 <29375C19-58B7-4A9A-9B6D-EF79D51A7691@bluequartz.net>
 <CF65FCD6-70C6-440B-A4A2-1F5D2D183AF6@bluequartz.net>
 <CALzTN-RwaPUD_KvJDptjfXr84oX_uY7ig2pC0mE=e+0jUr+OzQ@mail.gmail.com>
 <DE6F155B-2295-46BE-AB01-F0B04EB37DC0@bluequartz.net>
 <CALzTN-QyFafJ-yibz+B3Qs6Xf-1XMLbjOYVKREi4ssrQVS1yBA@mail.gmail.com>
 <454718DB-56FA-4AC3-B1CF-59964ED9523B@bluequartz.net>
 <7EFC0503-D75F-4E0D-94F9-42679FBFF090@bluequartz.net>
 <CALzTN-QvbYv6z6oNdOS6atmMntu8T3scug7Ja9vf8Nrs6k15Vw@mail.gmail.com>
 <1A9507C2-C1A4-4D77-A6A2-EE79D111F578@bluequartz.net>
Message-ID: <CALzTN-TSbY_FErsaR5-hc8NiwOX+FKteSeqAbp-qC5spRpB-UQ@mail.gmail.com>

What happened? Which of the plugins worked or did not work?

ITK does use static initialization to populate the IO factories. The
solution, if that is the problem, is to have a library, like your
ITKSupport, that all the plugins link to which does the
initialization, but to turn off the static initialization for the
plugins with ITK_NO_IO_FACTORY_REGISTER_MANAGER.

HTH,
Matt

On Mon, Nov 2, 2015 at 12:17 PM, Michael Jackson
<mike.jackson at bluequartz.net> wrote:
> That did not seem to help either. Any more ideas? Does ITK build some
> intermediate static libraries that have ?managers? that load filters? I ran
> into an issue with our own code where we had static libraries with singleton
> ?manager? design patterns that turned out not to work due to each library
> getting its own singleton instance.
> --
> Mike Jackson  [mike.jackson at bluequartz.net]
>
>
> On Oct 30, 2015, at 4:07 PM, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>
> Thanks for the information.
>
> It is hard to tell, but maybe it is related to factory registration.
> To test, try this:
>
> In the plugin CMake code, add
>
>  set(ITK_NO_IO_FACTORY_REGISTER_MANAGER 1)
>
> before
>
>  include(${ITK_USE_FILE})
>
> Then see if neither plugins work, both plugins work, and one of the
> plugins works.
>
> HTH,
> Matt
>
> On Fri, Oct 30, 2015 at 1:36 PM, Michael Jackson
> <mike.jackson at bluequartz.net> wrote:
>
> Some more data. If we create an intermediate library that links to ITK,
> called ITKSupport, and then have our plugins link against ITKSupport then
> the code executes correctly. Just another data point.
> --
> Michael A. Jackson
> BlueQuartz Software, LLC
> [e]: mike.jackson at bluequartz.net
>
> On Oct 30, 2015, at 12:57 PM, Michael Jackson <mike.jackson at bluequartz.net>
> wrote:
>
> Yes. Verified. Both plugins are built as part of DREAM.3D and we don?t put
> any extra CXX_FLAGS in any of the CMake files. We also built with VERBOSE=1
> and looked at the compile commands to ensure that what we wanted was
> actually being used. Then we looked at the libraries themselves with otool
> -L to ensure they all link against libC++. Which they do.
>
>
> --
> Michael A. Jackson
> BlueQuartz Software, LLC
> [e]: mike.jackson at bluequartz.net
>
> On Oct 30, 2015, at 12:05 PM, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>
> Hi Michael,
>
> Sorry to be redundant, and just to be sure: are both A.plugin and
> B.plugin built with the same C++ standard library, OSX deployment
> target, and C++ standard?
>
> Thanks,
> Matt
>
> On Fri, Oct 30, 2015 at 11:35 AM, Michael Jackson
> <mike.jackson at bluequartz.net> wrote:
>
>
>
> On Oct 29, 2015, at 11:40 AM, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>
> On Thu, Oct 29, 2015 at 10:00 AM, Michael Jackson
> <mike.jackson at bluequartz.net> wrote:
>
> We also ran an experiment where we moved the ITK Dependency from just the
> plugin down into one of our lower level libraries. So now we have the plugin
> dependent on a lower level library which then is dependent on the ITK
> Libraries. Now the code seems to execute and produce results. This was on OS
> X 10.9 and 10.10. So it seems that there is some odd issue with loading the
> ITK libraries through a plugin mechanism? Does ITK need the ?-fPIC? added to
> the list of compile commands?
>
>
> If ITK is built in a plugin as shared libraries, then it will already
> be built with -fPIC.
>
>
> Qt is actually built WITHOUT C++11 support but still links against libc++.
> They (the Qt Devs) set the OS X Min Deployment Version to 10.7. I have no
> idea what that triggers or not.
>
>
> All code should be built with the same C++ standard and OSX deployment
> target. When building ITK and related code, set
> CMAKE_OSX_DEPLOYMENT_TARGET [1] to 10.7 to ensure all binaries are
> using consistent libraries.
>
> HTH,
> Matt
>
> [1]
> https://cmake.org/cmake/help/v3.3/variable/CMAKE_OSX_DEPLOYMENT_TARGET.html
>
>
> Matt,
> We have verified that ALL dependent libraries are built with libC++, 10.7 as
> the min deployment, C++11 enabled. This goes for Boost, HDF5, Eigen, ITK,
> and Qt 5.5.1. We still have the issue. We can also reproduce that if we move
> the dependency to a lower level then the issue goes away. So it would seem
> that there is a problem with multiple plugins being dependent on the same
> External library. in this case it is ITK. I?ll try to diagram below.
> ## Failure Mode ##
> A.plugin depends on ITK
> A.plugin depends on SIMPlib.
>
> B.plugin depends on ITK
> B.plugin depends on SIMPlib.
>
> B.plugin will fail to execute properly.
>
> ## Success Mode ##
> A.plugin depends on SIMPlib.
> SIMPlib depends on ITK
>
> B.plugin depends on SIMPlib.
> SIMPlib depends on ITK
>
> The DREAM.3D filters both execute properly and give the proper output.
>
> --
> Michael A. Jackson
> BlueQuartz Software, LLC
> [e]: mike.jackson at bluequartz.net
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
>
>
>
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From blowekamp at mail.nih.gov  Mon Nov  2 13:12:38 2015
From: blowekamp at mail.nih.gov (Bradley Lowekamp)
Date: Mon, 2 Nov 2015 13:12:38 -0500
Subject: [ITK] [ITK-users]  Buffered Region out of Range error
In-Reply-To: <1A9507C2-C1A4-4D77-A6A2-EE79D111F578@bluequartz.net>
References: <C1CA0247-EC76-4677-8679-6A2867C7ED59@bluequartz.net>
 <CALzTN-S-xzRugHCgP6KeEfM7HzjxLXE7ONOSsQ+kTCutUT4mxQ@mail.gmail.com>
 <9D1176BA-4865-45C9-B499-234F66922463@bluequartz.net>
 <17C498DE-21D8-4EE5-BCD9-85286B8B9E50@mail.nih.gov>
 <B517CAFD-A291-4213-B507-D00447853697@bluequartz.net>
 <5EA71915-616F-4FFD-91E8-26941201051C@mail.nih.gov>
 <29375C19-58B7-4A9A-9B6D-EF79D51A7691@bluequartz.net>
 <CF65FCD6-70C6-440B-A4A2-1F5D2D183AF6@bluequartz.net>
 <CALzTN-RwaPUD_KvJDptjfXr84oX_uY7ig2pC0mE=e+0jUr+OzQ@mail.gmail.com>
 <DE6F155B-2295-46BE-AB01-F0B04EB37DC0@bluequartz.net>
 <CALzTN-QyFafJ-yibz+B3Qs6Xf-1XMLbjOYVKREi4ssrQVS1yBA@mail.gmail.com>
 <454718DB-56FA-4AC3-B1CF-59964ED9523B@bluequartz.net>
 <7EFC0503-D75F-4E0D-94F9-42679FBFF090@bluequartz.net>
 <CALzTN-QvbYv6z6oNdOS6atmMntu8T3scug7Ja9vf8Nrs6k15Vw@mail.gmail.com>
 <1A9507C2-C1A4-4D77-A6A2-EE79D111F578@bluequartz.net>
Message-ID: <57B084C5-869D-4074-BE60-54016738F139@mail.nih.gov>

I still think it's a failing dynamic cast some place.

You could try adding SimpleITK's Explicit library[1] which explicitly instantiates common types used in SimpleITK. Its possible having some of the Core Common classes instated in a shared library resolves the problem. The library should be fairly independent and easy to separate.

HTH,
Brad

[1] https://github.com/SimpleITK/SimpleITK/tree/master/Code/Explicit

On Nov 2, 2015, at 12:17 PM, Michael Jackson <mike.jackson at bluequartz.net> wrote:

> That did not seem to help either. Any more ideas? Does ITK build some intermediate static libraries that have ?managers? that load filters? I ran into an issue with our own code where we had static libraries with singleton ?manager? design patterns that turned out not to work due to each library getting its own singleton instance.
> --
> Mike Jackson  [mike.jackson at bluequartz.net]
> 
> 
>> On Oct 30, 2015, at 4:07 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>> 
>> Thanks for the information.
>> 
>> It is hard to tell, but maybe it is related to factory registration.
>> To test, try this:
>> 
>> In the plugin CMake code, add
>> 
>>  set(ITK_NO_IO_FACTORY_REGISTER_MANAGER 1)
>> 
>> before
>> 
>>  include(${ITK_USE_FILE})
>> 
>> Then see if neither plugins work, both plugins work, and one of the
>> plugins works.
>> 
>> HTH,
>> Matt
>> 
>> On Fri, Oct 30, 2015 at 1:36 PM, Michael Jackson
>> <mike.jackson at bluequartz.net> wrote:
>>> Some more data. If we create an intermediate library that links to ITK, called ITKSupport, and then have our plugins link against ITKSupport then the code executes correctly. Just another data point.
>>> --
>>> Michael A. Jackson
>>> BlueQuartz Software, LLC
>>> [e]: mike.jackson at bluequartz.net
>>> 
>>>> On Oct 30, 2015, at 12:57 PM, Michael Jackson <mike.jackson at bluequartz.net> wrote:
>>>> 
>>>> Yes. Verified. Both plugins are built as part of DREAM.3D and we don?t put any extra CXX_FLAGS in any of the CMake files. We also built with VERBOSE=1 and looked at the compile commands to ensure that what we wanted was actually being used. Then we looked at the libraries themselves with otool -L to ensure they all link against libC++. Which they do.
>>>> 
>>>> 
>>>> --
>>>> Michael A. Jackson
>>>> BlueQuartz Software, LLC
>>>> [e]: mike.jackson at bluequartz.net
>>>> 
>>>>> On Oct 30, 2015, at 12:05 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>>>> 
>>>>> Hi Michael,
>>>>> 
>>>>> Sorry to be redundant, and just to be sure: are both A.plugin and
>>>>> B.plugin built with the same C++ standard library, OSX deployment
>>>>> target, and C++ standard?
>>>>> 
>>>>> Thanks,
>>>>> Matt
>>>>> 
>>>>> On Fri, Oct 30, 2015 at 11:35 AM, Michael Jackson
>>>>> <mike.jackson at bluequartz.net> wrote:
>>>>>> 
>>>>>> 
>>>>>>> On Oct 29, 2015, at 11:40 AM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>>>>>> 
>>>>>>> On Thu, Oct 29, 2015 at 10:00 AM, Michael Jackson
>>>>>>> <mike.jackson at bluequartz.net> wrote:
>>>>>>>> We also ran an experiment where we moved the ITK Dependency from just the
>>>>>>>> plugin down into one of our lower level libraries. So now we have the plugin
>>>>>>>> dependent on a lower level library which then is dependent on the ITK
>>>>>>>> Libraries. Now the code seems to execute and produce results. This was on OS
>>>>>>>> X 10.9 and 10.10. So it seems that there is some odd issue with loading the
>>>>>>>> ITK libraries through a plugin mechanism? Does ITK need the ?-fPIC? added to
>>>>>>>> the list of compile commands?
>>>>>>> 
>>>>>>> If ITK is built in a plugin as shared libraries, then it will already
>>>>>>> be built with -fPIC.
>>>>>>> 
>>>>>>> 
>>>>>>>> Qt is actually built WITHOUT C++11 support but still links against libc++.
>>>>>>>> They (the Qt Devs) set the OS X Min Deployment Version to 10.7. I have no
>>>>>>>> idea what that triggers or not.
>>>>>>> 
>>>>>>> All code should be built with the same C++ standard and OSX deployment
>>>>>>> target. When building ITK and related code, set
>>>>>>> CMAKE_OSX_DEPLOYMENT_TARGET [1] to 10.7 to ensure all binaries are
>>>>>>> using consistent libraries.
>>>>>>> 
>>>>>>> HTH,
>>>>>>> Matt
>>>>>>> 
>>>>>>> [1] https://cmake.org/cmake/help/v3.3/variable/CMAKE_OSX_DEPLOYMENT_TARGET.html
>>>>>> 
>>>>>> Matt,
>>>>>> We have verified that ALL dependent libraries are built with libC++, 10.7 as the min deployment, C++11 enabled. This goes for Boost, HDF5, Eigen, ITK, and Qt 5.5.1. We still have the issue. We can also reproduce that if we move the dependency to a lower level then the issue goes away. So it would seem that there is a problem with multiple plugins being dependent on the same External library. in this case it is ITK. I?ll try to diagram below.
>>>>>> ## Failure Mode ##
>>>>>> A.plugin depends on ITK
>>>>>> A.plugin depends on SIMPlib.
>>>>>> 
>>>>>> B.plugin depends on ITK
>>>>>> B.plugin depends on SIMPlib.
>>>>>> 
>>>>>> B.plugin will fail to execute properly.
>>>>>> 
>>>>>> ## Success Mode ##
>>>>>> A.plugin depends on SIMPlib.
>>>>>> SIMPlib depends on ITK
>>>>>> 
>>>>>> B.plugin depends on SIMPlib.
>>>>>> SIMPlib depends on ITK
>>>>>> 
>>>>>> The DREAM.3D filters both execute properly and give the proper output.
>>>>>> 
>>>>>> --
>>>>>> Michael A. Jackson
>>>>>> BlueQuartz Software, LLC
>>>>>> [e]: mike.jackson at bluequartz.net
>>>>>> _____________________________________
>>>>>> Powered by www.kitware.com
>>>>>> 
>>>>>> Visit other Kitware open-source projects at
>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>> 
>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>> http://www.kitware.com/products/protraining.php
>>>>>> 
>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>> 
>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>> 
>>> 
> 
> _____________________________________
> Powered by www.kitware.com
> 
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
> 
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
> 
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
> 
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users

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From mike.jackson at bluequartz.net  Mon Nov  2 16:36:41 2015
From: mike.jackson at bluequartz.net (Michael Jackson)
Date: Mon, 2 Nov 2015 16:36:41 -0500
Subject: [ITK] [ITK-users]  Buffered Region out of Range error
In-Reply-To: <57B084C5-869D-4074-BE60-54016738F139@mail.nih.gov>
References: <C1CA0247-EC76-4677-8679-6A2867C7ED59@bluequartz.net>
 <CALzTN-S-xzRugHCgP6KeEfM7HzjxLXE7ONOSsQ+kTCutUT4mxQ@mail.gmail.com>
 <9D1176BA-4865-45C9-B499-234F66922463@bluequartz.net>
 <17C498DE-21D8-4EE5-BCD9-85286B8B9E50@mail.nih.gov>
 <B517CAFD-A291-4213-B507-D00447853697@bluequartz.net>
 <5EA71915-616F-4FFD-91E8-26941201051C@mail.nih.gov>
 <29375C19-58B7-4A9A-9B6D-EF79D51A7691@bluequartz.net>
 <CF65FCD6-70C6-440B-A4A2-1F5D2D183AF6@bluequartz.net>
 <CALzTN-RwaPUD_KvJDptjfXr84oX_uY7ig2pC0mE=e+0jUr+OzQ@mail.gmail.com>
 <DE6F155B-2295-46BE-AB01-F0B04EB37DC0@bluequartz.net>
 <CALzTN-QyFafJ-yibz+B3Qs6Xf-1XMLbjOYVKREi4ssrQVS1yBA@mail.gmail.com>
 <454718DB-56FA-4AC3-B1CF-59964ED9523B@bluequartz.net>
 <7EFC0503-D75F-4E0D-94F9-42679FBFF090@bluequartz.net>
 <CALzTN-QvbYv6z6oNdOS6atmMntu8T3scug7Ja9vf8Nrs6k15Vw@mail.gmail.com>
 <1A9507C2-C1A4-4D77-A6A2-EE79D111F578@bluequartz.net>
 <57B084C5-869D-4074-BE60-54016738F139@mail.nih.gov>
Message-ID: <A775F221-C42C-4620-AD54-4AF5D5241A64@bluequartz.net>

Your suspicions may be correct. We tried with a different filter (Sobel Edge) and get the following Exception from ITK:

"Failed to execute itk::SobelEdgeDetectionImageFilter filter. Error Message returned from ITK:
      itk::ERROR: Image(0x7fb12a112f60): itk::ImageBase::CopyInformation() cannot cast PKN3itk10DataObjectE to PKN3itk9ImageBaseILj3EEE?

Does this help diagnosing the issue?

We have also found that if our actual application is linked against ITK then the code will execute without issues. If the application is NOT linked against ITK but instead only the plugin itself is linked against ITK then the code will fail when multiple plugins are linked against ITK.

Again, thanks for all the help.
--
Mike Jackson  [mike.jackson at bluequartz.net]


> On Nov 2, 2015, at 1:12 PM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
> 
> I still think it's a failing dynamic cast some place.
> 
> You could try adding SimpleITK's Explicit library[1] which explicitly instantiates common types used in SimpleITK. Its possible having some of the Core Common classes instated in a shared library resolves the problem. The library should be fairly independent and easy to separate.
> 
> HTH,
> Brad
> 
> [1] https://github.com/SimpleITK/SimpleITK/tree/master/Code/Explicit
> 
> On Nov 2, 2015, at 12:17 PM, Michael Jackson <mike.jackson at bluequartz.net> wrote:
> 
>> That did not seem to help either. Any more ideas? Does ITK build some intermediate static libraries that have ?managers? that load filters? I ran into an issue with our own code where we had static libraries with singleton ?manager? design patterns that turned out not to work due to each library getting its own singleton instance.
>> --
>> Mike Jackson  [mike.jackson at bluequartz.net]
>> 
>> 
>>> On Oct 30, 2015, at 4:07 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>> 
>>> Thanks for the information.
>>> 
>>> It is hard to tell, but maybe it is related to factory registration.
>>> To test, try this:
>>> 
>>> In the plugin CMake code, add
>>> 
>>>  set(ITK_NO_IO_FACTORY_REGISTER_MANAGER 1)
>>> 
>>> before
>>> 
>>>  include(${ITK_USE_FILE})
>>> 
>>> Then see if neither plugins work, both plugins work, and one of the
>>> plugins works.
>>> 
>>> HTH,
>>> Matt
>>> 
>>> On Fri, Oct 30, 2015 at 1:36 PM, Michael Jackson
>>> <mike.jackson at bluequartz.net> wrote:
>>>> Some more data. If we create an intermediate library that links to ITK, called ITKSupport, and then have our plugins link against ITKSupport then the code executes correctly. Just another data point.
>>>> --
>>>> Michael A. Jackson
>>>> BlueQuartz Software, LLC
>>>> [e]: mike.jackson at bluequartz.net
>>>> 
>>>>> On Oct 30, 2015, at 12:57 PM, Michael Jackson <mike.jackson at bluequartz.net> wrote:
>>>>> 
>>>>> Yes. Verified. Both plugins are built as part of DREAM.3D and we don?t put any extra CXX_FLAGS in any of the CMake files. We also built with VERBOSE=1 and looked at the compile commands to ensure that what we wanted was actually being used. Then we looked at the libraries themselves with otool -L to ensure they all link against libC++. Which they do.
>>>>> 
>>>>> 
>>>>> --
>>>>> Michael A. Jackson
>>>>> BlueQuartz Software, LLC
>>>>> [e]: mike.jackson at bluequartz.net
>>>>> 
>>>>>> On Oct 30, 2015, at 12:05 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>>>>> 
>>>>>> Hi Michael,
>>>>>> 
>>>>>> Sorry to be redundant, and just to be sure: are both A.plugin and
>>>>>> B.plugin built with the same C++ standard library, OSX deployment
>>>>>> target, and C++ standard?
>>>>>> 
>>>>>> Thanks,
>>>>>> Matt
>>>>>> 
>>>>>> On Fri, Oct 30, 2015 at 11:35 AM, Michael Jackson
>>>>>> <mike.jackson at bluequartz.net> wrote:
>>>>>>> 
>>>>>>> 
>>>>>>>> On Oct 29, 2015, at 11:40 AM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>>>>>>> 
>>>>>>>> On Thu, Oct 29, 2015 at 10:00 AM, Michael Jackson
>>>>>>>> <mike.jackson at bluequartz.net> wrote:
>>>>>>>>> We also ran an experiment where we moved the ITK Dependency from just the
>>>>>>>>> plugin down into one of our lower level libraries. So now we have the plugin
>>>>>>>>> dependent on a lower level library which then is dependent on the ITK
>>>>>>>>> Libraries. Now the code seems to execute and produce results. This was on OS
>>>>>>>>> X 10.9 and 10.10. So it seems that there is some odd issue with loading the
>>>>>>>>> ITK libraries through a plugin mechanism? Does ITK need the ?-fPIC? added to
>>>>>>>>> the list of compile commands?
>>>>>>>> 
>>>>>>>> If ITK is built in a plugin as shared libraries, then it will already
>>>>>>>> be built with -fPIC.
>>>>>>>> 
>>>>>>>> 
>>>>>>>>> Qt is actually built WITHOUT C++11 support but still links against libc++.
>>>>>>>>> They (the Qt Devs) set the OS X Min Deployment Version to 10.7. I have no
>>>>>>>>> idea what that triggers or not.
>>>>>>>> 
>>>>>>>> All code should be built with the same C++ standard and OSX deployment
>>>>>>>> target. When building ITK and related code, set
>>>>>>>> CMAKE_OSX_DEPLOYMENT_TARGET [1] to 10.7 to ensure all binaries are
>>>>>>>> using consistent libraries.
>>>>>>>> 
>>>>>>>> HTH,
>>>>>>>> Matt
>>>>>>>> 
>>>>>>>> [1] https://cmake.org/cmake/help/v3.3/variable/CMAKE_OSX_DEPLOYMENT_TARGET.html
>>>>>>> 
>>>>>>> Matt,
>>>>>>> We have verified that ALL dependent libraries are built with libC++, 10.7 as the min deployment, C++11 enabled. This goes for Boost, HDF5, Eigen, ITK, and Qt 5.5.1. We still have the issue. We can also reproduce that if we move the dependency to a lower level then the issue goes away. So it would seem that there is a problem with multiple plugins being dependent on the same External library. in this case it is ITK. I?ll try to diagram below.
>>>>>>> ## Failure Mode ##
>>>>>>> A.plugin depends on ITK
>>>>>>> A.plugin depends on SIMPlib.
>>>>>>> 
>>>>>>> B.plugin depends on ITK
>>>>>>> B.plugin depends on SIMPlib.
>>>>>>> 
>>>>>>> B.plugin will fail to execute properly.
>>>>>>> 
>>>>>>> ## Success Mode ##
>>>>>>> A.plugin depends on SIMPlib.
>>>>>>> SIMPlib depends on ITK
>>>>>>> 
>>>>>>> B.plugin depends on SIMPlib.
>>>>>>> SIMPlib depends on ITK
>>>>>>> 
>>>>>>> The DREAM.3D filters both execute properly and give the proper output.
>>>>>>> 
>>>>>>> --
>>>>>>> Michael A. Jackson
>>>>>>> BlueQuartz Software, LLC
>>>>>>> [e]: mike.jackson at bluequartz.net
>>>>>>> _____________________________________
>>>>>>> Powered by www.kitware.com
>>>>>>> 
>>>>>>> Visit other Kitware open-source projects at
>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>> 
>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>> http://www.kitware.com/products/protraining.php
>>>>>>> 
>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>> 
>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>>> 
>>>> 
>> 
>> _____________________________________
>> Powered by www.kitware.com
>> 
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>> 
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>> 
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>> 
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-users
> 

_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From wiegel at mv.uni-kl.de  Tue Nov  3 08:22:22 2015
From: wiegel at mv.uni-kl.de (Timo Wiegel)
Date: Tue, 3 Nov 2015 13:22:22 +0000
Subject: [ITK] [ITK-users] Cable Swig, what changes to normal swig
Message-ID: <F0552EDC5C1B3741BF19D8D223B5CEAEEADA81@EXMBX06.rhrk.uni-kl.de>

Hello,

I used swig for a Matab Wrapper. There is a Matlab Modul for swig by jaeandersson (https://github.com/jaeandersson/swig).
Because I work on a Windows System I used MinGW to compile, which isn't a nice work.

As I saw, the swig/CableSwig implementation of Kitware, so I tried to move to CableSwig. I'm a happy user of CMake :).

I now see there is some difference in the swig-syntax. Can you sum up the changes for me, so I have an opinion how long I will need for the move to CableSwig.

At the moment I see:
Fragments can't be type specialized as in swig.
Is there a reason you removed this?
I think I could change this for me, but if there are lot of those changes it will be to time consuming.

The swig-language-moduls have a little bit different interface. I think if there aren't to many changes, I could change the matlab modul, to work with CableSwig

Thx
Timo


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Kitware offers ITK Training Courses, for more information visit:
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http://www.itk.org/Wiki/ITK_FAQ

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From matt.mccormick at kitware.com  Tue Nov  3 10:39:55 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 3 Nov 2015 10:39:55 -0500
Subject: [ITK] [ITK-users] Cable Swig, what changes to normal swig
In-Reply-To: <F0552EDC5C1B3741BF19D8D223B5CEAEEADA81@EXMBX06.rhrk.uni-kl.de>
References: <F0552EDC5C1B3741BF19D8D223B5CEAEEADA81@EXMBX06.rhrk.uni-kl.de>
Message-ID: <CALzTN-SBgWTWx7esSQLHzO6Dh=y+CQQmKNGajaUB7aWvEoYrRg@mail.gmail.com>

Hi Timo,

The CableSwig package is no longer supported.  We currently use
upstream swig for wrapping ITK. In general, though, CMake works well
for building swig output.

HTH,
Matt

On Tue, Nov 3, 2015 at 8:22 AM, Timo Wiegel <wiegel at mv.uni-kl.de> wrote:
> Hello,
>
>
>
> I used swig for a Matab Wrapper. There is a Matlab Modul for swig by
> jaeandersson (https://github.com/jaeandersson/swig).
>
> Because I work on a Windows System I used MinGW to compile, which isn?t a
> nice work.
>
>
>
> As I saw, the swig/CableSwig implementation of Kitware, so I tried to move
> to CableSwig. I?m a happy user of CMake J.
>
>
>
> I now see there is some difference in the swig-syntax. Can you sum up the
> changes for me, so I have an opinion how long I will need for the move to
> CableSwig.
>
>
>
> At the moment I see:
>
> Fragments can?t be type specialized as in swig.
>
> Is there a reason you removed this?
>
> I think I could change this for me, but if there are lot of those changes it
> will be to time consuming.
>
>
>
> The swig-language-moduls have a little bit different interface. I think if
> there aren?t to many changes, I could change the matlab modul, to work with
> CableSwig
>
>
>
> Thx
>
> Timo
>
>
>
>
>
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From zhuangming.shen at sphic.org.cn  Tue Nov  3 19:17:48 2015
From: zhuangming.shen at sphic.org.cn (=?utf-8?B?5rKI5bqE5piO?=)
Date: Wed, 4 Nov 2015 00:17:48 +0000
Subject: [ITK] [ITK-users] How to write the codes in python?
Message-ID: <1446596266338.47108@sphic.org.cn>

Hi all,


I'd like to know how to convert Image1.cxx (see codes below) to python, especially "ImageType::RegionType region;?". Could anyone give me some hints? Thanks in advance.



typedef itk::Image<unsigned short, 3> ImageType;

ImageType::Pointer image = ImageType::New();


ImageType::IndexType start;

start[0] = 0;

start[1] = 0;

start[2] = 0;


ImageType::SizeType size;

size[0] = 200;

size[1] = 200;

size[2] = 200;


ImageType::RegionType region;

region.SetSize(size);

region.SetIndex(start);


image->SetRegions(region);

image->Allocate();



Regards,


Zhuangming Shen
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From juanprietob at gmail.com  Tue Nov  3 20:55:13 2015
From: juanprietob at gmail.com (Juan Carlos Prieto)
Date: Tue, 3 Nov 2015 20:55:13 -0500
Subject: [ITK] [ITK-users] emscripten itkImageReader
Message-ID: <CAPWJNGQaues0FOf7sqpR9iVvdB572R0EavUW--eZ9TLBcLCGYA@mail.gmail.com>

Dear all,

I have started using emscripten to develop a plugin to read medical images
in the browser.

I have a compiled version of my code that works in Node.js.
I am able to read an image, manipulate the data and write the image.

However, whenever I tried to execute the same code in the browser, the
itk::ImageReader seems to be creating a reader for PNG only.

This is an example code that I am execuitng:

var itkImageJS = new module.itkImageJS();
console.log("Installing file: ");
var input_filepath = '/raw/test.nii.gz';
FS.writeFile(input_filepath, imagedata, { encoding: 'binary' });

var stat = FS.stat(input_filepath);//The file exists!

itkImageJS.ReadImage(input_filepath);


And this is the output from the exception:

itk::ExceptionObject (0x6a5710)
testFS.js:1 Location: "unknown"
testFS.js:1 File: .../ITK/Modules/IO/PNG/src/itkPNGImageIO.cxx
testFS.js:1 Line: 107
testFS.js:1 Description: itk::ERROR: PNGImageIO(0x975628): PNGImageIO
failed to read header for file:
testFS.js:1 Reason: fread read only 0 instead of 8

Instead of creating the reader for a Nifti image, the reader is for PNG
image.

Is it possible to read other type of files in the browser?
Do I have to read the data server side and stream it to the client?

Any comments or suggestions will be greatly appreciated.

Best regards,

Juan
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From juanprietob at gmail.com  Tue Nov  3 22:07:09 2015
From: juanprietob at gmail.com (Juan Carlos Prieto)
Date: Tue, 3 Nov 2015 22:07:09 -0500
Subject: [ITK] [ITK-users] emscripten itkImageReader
In-Reply-To: <CAPWJNGQaues0FOf7sqpR9iVvdB572R0EavUW--eZ9TLBcLCGYA@mail.gmail.com>
References: <CAPWJNGQaues0FOf7sqpR9iVvdB572R0EavUW--eZ9TLBcLCGYA@mail.gmail.com>
Message-ID: <CAPWJNGQgQmpR_AuL155N_NPL6XU5wvv=6s=dBhyZ8H6_Q6hk2g@mail.gmail.com>

Apologies,

I found the error in my code, now it works!

var itkImageJS = new module.itkImageJS();
console.log("Installing file: ");
var input_filepath = '/raw/test.nii.gz';
FS.writeFile(input_filepath, *new Uint8Array(imagedata)*, { encoding:
'binary' });

var stat = FS.stat(input_filepath);//The file exists!
itkImageJS.ReadImage(input_filepath);



Best regards,

Juan



On Tue, Nov 3, 2015 at 8:55 PM, Juan Carlos Prieto <juanprietob at gmail.com>
wrote:

> Dear all,
>
> I have started using emscripten to develop a plugin to read medical images
> in the browser.
>
> I have a compiled version of my code that works in Node.js.
> I am able to read an image, manipulate the data and write the image.
>
> However, whenever I tried to execute the same code in the browser, the
> itk::ImageReader seems to be creating a reader for PNG only.
>
> This is an example code that I am execuitng:
>
> var itkImageJS = new module.itkImageJS();
> console.log("Installing file: ");
> var input_filepath = '/raw/test.nii.gz';
> FS.writeFile(input_filepath, imagedata, { encoding: 'binary' });
>
> var stat = FS.stat(input_filepath);//The file exists!
>
> itkImageJS.ReadImage(input_filepath);
>
>
> And this is the output from the exception:
>
> itk::ExceptionObject (0x6a5710)
> testFS.js:1 Location: "unknown"
> testFS.js:1 File: .../ITK/Modules/IO/PNG/src/itkPNGImageIO.cxx
> testFS.js:1 Line: 107
> testFS.js:1 Description: itk::ERROR: PNGImageIO(0x975628): PNGImageIO
> failed to read header for file:
> testFS.js:1 Reason: fread read only 0 instead of 8
>
> Instead of creating the reader for a Nifti image, the reader is for PNG
> image.
>
> Is it possible to read other type of files in the browser?
> Do I have to read the data server side and stream it to the client?
>
> Any comments or suggestions will be greatly appreciated.
>
> Best regards,
>
> Juan
>
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_____________________________________
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From matt.mccormick at kitware.com  Tue Nov  3 23:24:44 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 3 Nov 2015 23:24:44 -0500
Subject: [ITK] [ITK-users] emscripten itkImageReader
In-Reply-To: <CAPWJNGQgQmpR_AuL155N_NPL6XU5wvv=6s=dBhyZ8H6_Q6hk2g@mail.gmail.com>
References: <CAPWJNGQaues0FOf7sqpR9iVvdB572R0EavUW--eZ9TLBcLCGYA@mail.gmail.com>
 <CAPWJNGQgQmpR_AuL155N_NPL6XU5wvv=6s=dBhyZ8H6_Q6hk2g@mail.gmail.com>
Message-ID: <CALzTN-TjbqzrBdTy9UUv_RCbLyH+zmAPKdmL2WroxHNS_zeQtQ@mail.gmail.com>

Hi Juan,

Good to hear -- thanks for sharing!


Side note -- by using

  find_package(ITK REQUIRED COMPONENTS ModuleA ModuleB IOModuleA IOModuleB ... )

you can specify what IO modules to support.  If COMPONENTS is not
specified, then all the available modules are used.  However, for
Emscripten, this can greatly increase the .js file size.  So, limiting
the modules to the formats is a way to improve .js file size.

Cheers,
Matt

On Tue, Nov 3, 2015 at 10:07 PM, Juan Carlos Prieto
<juanprietob at gmail.com> wrote:
> Apologies,
>
> I found the error in my code, now it works!
>
> var itkImageJS = new module.itkImageJS();
> console.log("Installing file: ");
> var input_filepath = '/raw/test.nii.gz';
> FS.writeFile(input_filepath, new Uint8Array(imagedata), { encoding: 'binary'
> });
>
> var stat = FS.stat(input_filepath);//The file exists!
> itkImageJS.ReadImage(input_filepath);
>
>
>
> Best regards,
>
> Juan
>
>
>
> On Tue, Nov 3, 2015 at 8:55 PM, Juan Carlos Prieto <juanprietob at gmail.com>
> wrote:
>>
>> Dear all,
>>
>> I have started using emscripten to develop a plugin to read medical images
>> in the browser.
>>
>> I have a compiled version of my code that works in Node.js.
>> I am able to read an image, manipulate the data and write the image.
>>
>> However, whenever I tried to execute the same code in the browser, the
>> itk::ImageReader seems to be creating a reader for PNG only.
>>
>> This is an example code that I am execuitng:
>>
>> var itkImageJS = new module.itkImageJS();
>> console.log("Installing file: ");
>> var input_filepath = '/raw/test.nii.gz';
>> FS.writeFile(input_filepath, imagedata, { encoding: 'binary' });
>>
>> var stat = FS.stat(input_filepath);//The file exists!
>>
>> itkImageJS.ReadImage(input_filepath);
>>
>>
>> And this is the output from the exception:
>>
>> itk::ExceptionObject (0x6a5710)
>> testFS.js:1 Location: "unknown"
>> testFS.js:1 File: .../ITK/Modules/IO/PNG/src/itkPNGImageIO.cxx
>> testFS.js:1 Line: 107
>> testFS.js:1 Description: itk::ERROR: PNGImageIO(0x975628): PNGImageIO
>> failed to read header for file:
>> testFS.js:1 Reason: fread read only 0 instead of 8
>>
>> Instead of creating the reader for a Nifti image, the reader is for PNG
>> image.
>>
>> Is it possible to read other type of files in the browser?
>> Do I have to read the data server side and stream it to the client?
>>
>> Any comments or suggestions will be greatly appreciated.
>>
>> Best regards,
>>
>> Juan
>
>
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users

From matt.mccormick at kitware.com  Tue Nov  3 23:52:58 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 3 Nov 2015 23:52:58 -0500
Subject: [ITK] [ITK-users] How to write the codes in python?
In-Reply-To: <1446596266338.47108@sphic.org.cn>
References: <1446596266338.47108@sphic.org.cn>
Message-ID: <CALzTN-Sy=HMRT-6fmq0N-L0R-wYpsaQS=eNP5u6YXH3rLb_91Q@mail.gmail.com>

Hello Zhuangming,

Here is a gist:

  https://gist.github.com/thewtex/ce403fef7bc09ca5392d

Note that you should ensure that ITK_WRAP_unsigned_short is ON in your
CMake configuration.

HTH,
Matt

On Tue, Nov 3, 2015 at 7:17 PM, ??? <zhuangming.shen at sphic.org.cn> wrote:
> Hi all,
>
>
> I'd like to know how to convert Image1.cxx (see codes below) to python,
> especially "ImageType::RegionType region;". Could anyone give me some hints?
> Thanks in advance.
>
>
>
> typedef itk::Image<unsigned short, 3> ImageType;
>
> ImageType::Pointer image = ImageType::New();
>
>
> ImageType::IndexType start;
>
> start[0] = 0;
>
> start[1] = 0;
>
> start[2] = 0;
>
>
> ImageType::SizeType size;
>
> size[0] = 200;
>
> size[1] = 200;
>
> size[2] = 200;
>
>
> ImageType::RegionType region;
>
> region.SetSize(size);
>
> region.SetIndex(start);
>
>
> image->SetRegions(region);
>
> image->Allocate();
>
>
>
> Regards,
>
>
> Zhuangming Shen
>
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
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Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From fitz at zhaw.ch  Wed Nov  4 07:54:27 2015
From: fitz at zhaw.ch (Fitze Thomas (fitz))
Date: Wed, 4 Nov 2015 12:54:27 +0000
Subject: [ITK] [ITK-users] IOSTL module does not register the factory
Message-ID: <1F4578D0-5EFF-411D-B292-89463BBCD32A@zhaw.ch>

Hi all,

I built ITK 4.8.1 with the external IOSTL module and am trying to use it in my CMake project like this:

find_package(ITK REQUIRED IOSTL)
include(${ITK_USE_FILE})

But that does not seem to correctly register the STLMeshIOFactory yielding a a "Could not create IO object for file test.stl? error when trying to load a stl. When i register the factory manually:

itk::STLMeshIOFactory::RegisterOneFactory();

it works as expected. But of course, that messes up all the other factories registered by CMake.

Whats going on here and how do i fix it?

Best,
Thomas
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From chvillap at gmail.com  Wed Nov  4 11:44:50 2015
From: chvillap at gmail.com (Carlos Henrique Villa Pinto)
Date: Wed, 4 Nov 2015 14:44:50 -0200
Subject: [ITK] [ITK-users] Segmentation fault when trying to generate a
 BSpline transform from a set of matching landmarks
In-Reply-To: <CALzTN-R8kkctx8NmKJVEtaNEOU61TPCeFpAFO58Zs5RsCN_WPw@mail.gmail.com>
References: <CAHa3=2kYemTOMua1BHkXpNNRiqPanfFd6WUU3poE+eGdn8ahAg@mail.gmail.com>
 <CALzTN-R8kkctx8NmKJVEtaNEOU61TPCeFpAFO58Zs5RsCN_WPw@mail.gmail.com>
Message-ID: <CAHa3=2kCC8b+bcLy9zqs8=-TmkoXfBpOgfN9v2ncB9iSChNiFQ@mail.gmail.com>

Hi Matt,

I installed the most recent version of ITK from Git master, wrote a SSCCE
code and tried again.
There is no segmentation fault anymore (good!), but now the program
terminates after throwing the following exception:

terminate called after throwing an instance of 'itk::ExceptionObject'
  what():
 /home/carlos/workspace/libraries/ITK/src/Modules/Core/Common/src/itkMultiThreader.cxx:417:
itk::ERROR: MultiThreader(0x1757290): Exception occurred during
SingleMethodExecute
/usr/local/include/ITK-4.9/itkBSplineScatteredDataPointSetToImageFilter.hxx:621:
itk::ERROR: PointSetToImageFilter(0x1761130): The reparameterized point
component -0.15748 is outside the corresponding parametric domain of [0, 2).

I still don't know why this is happening, but it seems to me that it has to
do with the image orientation... because my short example works fine when
the direction matrices of the fixed/moving images have positive values
only. If they have any negative value, however, the exception above is
thrown (segmentation fault in previous ITK versions).

I attached my SSCCE code for anyone who wants to take a look. You can use
it to manually define values for the direction matrix and see what happens.
No input data is needed.

Please let me know if you find out anything.

Thanks!
[]s

2015-11-02 14:10 GMT-02:00 Matt McCormick <matt.mccormick at kitware.com>:

> Hi Carlos,
>
> There have been some improvements to the
> LandmarkBasedTransformInitializer recently, so could you please try
> with Git master [1]?
>
> If the issue remains, could you please share a short, self-contained,
> compilable example?
>
> Thanks,
> Matt
>
> [1] http://www.itk.org/Wiki/ITK/Git
>
> [2] http://www.sscce.org/
>
> On Thu, Oct 29, 2015 at 9:12 AM, Carlos Henrique Villa Pinto
> <chvillap at gmail.com> wrote:
> > Hi, everyone.
> >
> > I have two sets of landmark points, detected from two different 3D MR
> > images, and I'm trying to estimate a nonlinear mapping between the pairs
> of
> > matching landmarks. I already have the matchings, I just need to
> generate a
> > BSpline transform from them. The LandmarkBasedTransformInitializer class
> > seems perfect for that, but when I call its InitializeTransform() method
> > (after setting all the required input parameters), the result is a
> > segmentation fault.
> >
> > I'm using ITK 4.8.0. I checked the source code and made some tests, but
> the
> > only thing that I could find out is that the problem happens in the
> > GenerateData() method of the BSplineScatteredDataPointSetToImageFilter
> > class, when the SingleMethodExecute() method is called by the
> > ThreadGenerator object. In such version of ITK, that happens in line 314
> of
> > the file BSplineScatteredDataPointSetToImageFilter.hxx. I couldn't go
> > further because I have no clue of what exactly is being called by the
> > ThreaderCallback in that class.
> >
> > Does anyone have any clue about what sort of things could cause a
> > segmentation fault in the BSplineScatteredDataPointSetToImageFilter
> class?
> > Could that be a bug, maybe?
> >
> > I don't know if this information is relevant, but my images have both LPI
> > orientation, origin = (-127.5, -127.5, -127.5) and spacing = 2 x 2 x 2
> mm.
> > And I'm using the SetReferenceImage() method of the
> > LandmarkBasedTransformInitializer class to define the parametric domain
> of
> > the BSpline transform.
> >
> > I can provide some pieces of code and more information about my data if
> > needed.
> >
> > Thanks in advance!
> >
> > []s
> >
> > --
> > Carlos Henrique Villa Pinto
> > Graduate Student in Computer Science
> > Federal University of S?o Carlos - Brazil
> > XCS
> >
> > _____________________________________
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Kitware offers ITK Training Courses, for more information visit:
> > http://www.kitware.com/products/protraining.php
> >
> > Please keep messages on-topic and check the ITK FAQ at:
> > http://www.itk.org/Wiki/ITK_FAQ
> >
> > Follow this link to subscribe/unsubscribe:
> > http://public.kitware.com/mailman/listinfo/insight-users
> >
>



-- 
Carlos Henrique Villa Pinto
Graduate Student in Computer Science
Federal University of S?o Carlos - Brazil
XCS
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From ntustison at gmail.com  Wed Nov  4 11:54:37 2015
From: ntustison at gmail.com (Nicholas Tustison)
Date: Wed, 4 Nov 2015 08:54:37 -0800
Subject: [ITK] [ITK-users] Segmentation fault when trying to generate
	a	BSpline transform from a set of matching landmarks
In-Reply-To: <CAHa3=2kCC8b+bcLy9zqs8=-TmkoXfBpOgfN9v2ncB9iSChNiFQ@mail.gmail.com>
References: <CAHa3=2kYemTOMua1BHkXpNNRiqPanfFd6WUU3poE+eGdn8ahAg@mail.gmail.com>
 <CALzTN-R8kkctx8NmKJVEtaNEOU61TPCeFpAFO58Zs5RsCN_WPw@mail.gmail.com>
 <CAHa3=2kCC8b+bcLy9zqs8=-TmkoXfBpOgfN9v2ncB9iSChNiFQ@mail.gmail.com>
Message-ID: <4CABB15B-8C47-4C59-98A5-232643308995@gmail.com>

Hi all,

The problem, I?m guessing, is exactly as Carlos points out?
The direction cosines are not identity and the LandmarkBased
TransformInitializer isn?t handling it properly.  The B-spline 
filter operates in the parametric domain and so it has no sense of 
the physical orientation.  

if you take a look at this filter

https://github.com/InsightSoftwareConsortium/ITK/blob/master/Modules/Filtering/DisplacementField/include/itkDisplacementFieldToBSplineImageFilter.hxx

you can see how I go between domains.  Particularly, take a look
at the following code sections:

https://github.com/InsightSoftwareConsortium/ITK/blob/master/Modules/Filtering/DisplacementField/include/itkDisplacementFieldToBSplineImageFilter.hxx#L159-L171
https://github.com/InsightSoftwareConsortium/ITK/blob/master/Modules/Filtering/DisplacementField/include/itkDisplacementFieldToBSplineImageFilter.hxx#L253-L255

I can probably take a look at the initializer to propose a fix but I?m
leaving tomorrow on vacation for a week and a half and won?t be
able to get to it until afterwards.

Nick



> On Nov 4, 2015, at 8:44 AM, Carlos Henrique Villa Pinto <chvillap at gmail.com> wrote:
> 
> Hi Matt,
> 
> I installed the most recent version of ITK from Git master, wrote a SSCCE code and tried again.
> There is no segmentation fault anymore (good!), but now the program terminates after throwing the following exception:
> 
> terminate called after throwing an instance of 'itk::ExceptionObject'
>   what():  /home/carlos/workspace/libraries/ITK/src/Modules/Core/Common/src/itkMultiThreader.cxx:417:
> itk::ERROR: MultiThreader(0x1757290): Exception occurred during SingleMethodExecute
> /usr/local/include/ITK-4.9/itkBSplineScatteredDataPointSetToImageFilter.hxx:621:
> itk::ERROR: PointSetToImageFilter(0x1761130): The reparameterized point component -0.15748 is outside the corresponding parametric domain of [0, 2).
> 
> I still don't know why this is happening, but it seems to me that it has to do with the image orientation... because my short example works fine when the direction matrices of the fixed/moving images have positive values only. If they have any negative value, however, the exception above is thrown (segmentation fault in previous ITK versions).
> 
> I attached my SSCCE code for anyone who wants to take a look. You can use it to manually define values for the direction matrix and see what happens. No input data is needed.
> 
> Please let me know if you find out anything.
> 
> Thanks!
> []s
> 
> 2015-11-02 14:10 GMT-02:00 Matt McCormick <matt.mccormick at kitware.com <mailto:matt.mccormick at kitware.com>>:
> Hi Carlos,
> 
> There have been some improvements to the
> LandmarkBasedTransformInitializer recently, so could you please try
> with Git master [1]?
> 
> If the issue remains, could you please share a short, self-contained,
> compilable example?
> 
> Thanks,
> Matt
> 
> [1] http://www.itk.org/Wiki/ITK/Git <http://www.itk.org/Wiki/ITK/Git>
> 
> [2] http://www.sscce.org/ <http://www.sscce.org/>
> 
> On Thu, Oct 29, 2015 at 9:12 AM, Carlos Henrique Villa Pinto
> <chvillap at gmail.com <mailto:chvillap at gmail.com>> wrote:
> > Hi, everyone.
> >
> > I have two sets of landmark points, detected from two different 3D MR
> > images, and I'm trying to estimate a nonlinear mapping between the pairs of
> > matching landmarks. I already have the matchings, I just need to generate a
> > BSpline transform from them. The LandmarkBasedTransformInitializer class
> > seems perfect for that, but when I call its InitializeTransform() method
> > (after setting all the required input parameters), the result is a
> > segmentation fault.
> >
> > I'm using ITK 4.8.0. I checked the source code and made some tests, but the
> > only thing that I could find out is that the problem happens in the
> > GenerateData() method of the BSplineScatteredDataPointSetToImageFilter
> > class, when the SingleMethodExecute() method is called by the
> > ThreadGenerator object. In such version of ITK, that happens in line 314 of
> > the file BSplineScatteredDataPointSetToImageFilter.hxx. I couldn't go
> > further because I have no clue of what exactly is being called by the
> > ThreaderCallback in that class.
> >
> > Does anyone have any clue about what sort of things could cause a
> > segmentation fault in the BSplineScatteredDataPointSetToImageFilter class?
> > Could that be a bug, maybe?
> >
> > I don't know if this information is relevant, but my images have both LPI
> > orientation, origin = (-127.5, -127.5, -127.5) and spacing = 2 x 2 x 2 mm.
> > And I'm using the SetReferenceImage() method of the
> > LandmarkBasedTransformInitializer class to define the parametric domain of
> > the BSpline transform.
> >
> > I can provide some pieces of code and more information about my data if
> > needed.
> >
> > Thanks in advance!
> >
> > []s
> >
> > --
> > Carlos Henrique Villa Pinto
> > Graduate Student in Computer Science
> > Federal University of S?o Carlos - Brazil
> > XCS
> >
> > _____________________________________
> > Powered by www.kitware.com <http://www.kitware.com/>
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html <http://www.kitware.com/opensource/opensource.html>
> >
> > Kitware offers ITK Training Courses, for more information visit:
> > http://www.kitware.com/products/protraining.php <http://www.kitware.com/products/protraining.php>
> >
> > Please keep messages on-topic and check the ITK FAQ at:
> > http://www.itk.org/Wiki/ITK_FAQ <http://www.itk.org/Wiki/ITK_FAQ>
> >
> > Follow this link to subscribe/unsubscribe:
> > http://public.kitware.com/mailman/listinfo/insight-users <http://public.kitware.com/mailman/listinfo/insight-users>
> >
> 
> 
> 
> -- 
> Carlos Henrique Villa Pinto
> Graduate Student in Computer Science
> Federal University of S?o Carlos - Brazil
> XCS
> <Example.zip>_____________________________________
> Powered by www.kitware.com
> 
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
> 
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
> 
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
> 
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users

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http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users

From matt.mccormick at kitware.com  Wed Nov  4 16:31:57 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 4 Nov 2015 16:31:57 -0500
Subject: [ITK] [ITK-users] IOSTL module does not register the factory
In-Reply-To: <1F4578D0-5EFF-411D-B292-89463BBCD32A@zhaw.ch>
References: <1F4578D0-5EFF-411D-B292-89463BBCD32A@zhaw.ch>
Message-ID: <CALzTN-ReK5nSudf_joLgZB3K+kiXPd0fsjqK=A=RzTiFoSHV4A@mail.gmail.com>

Hi Thomas,

Automatic factory registration is not yet supported for the the MeshIO
implementations like it is for ImageIO TransformIO.  Contributions are
welcome! [1]

But, there should be no issues with using
itk::STLMeshIOFactory::RegisterOneFactory().

HTH,
Matt


[1] http://www.itk.org/Wiki/ITK/Git

On Wed, Nov 4, 2015 at 7:54 AM, Fitze Thomas (fitz) <fitz at zhaw.ch> wrote:
> Hi all,
>
> I built ITK 4.8.1 with the external IOSTL module and am trying to use it in
> my CMake project like this:
>
> find_package(ITK REQUIRED IOSTL)
> include(${ITK_USE_FILE})
>
> But that does not seem to correctly register the STLMeshIOFactory yielding a
> a "Could not create IO object for file test.stl? error when trying to load a
> stl. When i register the factory manually:
>
> itk::STLMeshIOFactory::RegisterOneFactory();
>
> it works as expected. But of course, that messes up all the other factories
> registered by CMake.
>
> Whats going on here and how do i fix it?
>
> Best,
> Thomas
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users

From mike.jackson at bluequartz.net  Wed Nov  4 17:56:28 2015
From: mike.jackson at bluequartz.net (Michael Jackson)
Date: Wed, 4 Nov 2015 17:56:28 -0500
Subject: [ITK] [ITK-users]  Buffered Region out of Range error
In-Reply-To: <A775F221-C42C-4620-AD54-4AF5D5241A64@bluequartz.net>
References: <C1CA0247-EC76-4677-8679-6A2867C7ED59@bluequartz.net>
 <CALzTN-S-xzRugHCgP6KeEfM7HzjxLXE7ONOSsQ+kTCutUT4mxQ@mail.gmail.com>
 <9D1176BA-4865-45C9-B499-234F66922463@bluequartz.net>
 <17C498DE-21D8-4EE5-BCD9-85286B8B9E50@mail.nih.gov>
 <B517CAFD-A291-4213-B507-D00447853697@bluequartz.net>
 <5EA71915-616F-4FFD-91E8-26941201051C@mail.nih.gov>
 <29375C19-58B7-4A9A-9B6D-EF79D51A7691@bluequartz.net>
 <CF65FCD6-70C6-440B-A4A2-1F5D2D183AF6@bluequartz.net>
 <CALzTN-RwaPUD_KvJDptjfXr84oX_uY7ig2pC0mE=e+0jUr+OzQ@mail.gmail.com>
 <DE6F155B-2295-46BE-AB01-F0B04EB37DC0@bluequartz.net>
 <CALzTN-QyFafJ-yibz+B3Qs6Xf-1XMLbjOYVKREi4ssrQVS1yBA@mail.gmail.com>
 <454718DB-56FA-4AC3-B1CF-59964ED9523B@bluequartz.net>
 <7EFC0503-D75F-4E0D-94F9-42679FBFF090@bluequartz.net>
 <CALzTN-QvbYv6z6oNdOS6atmMntu8T3scug7Ja9vf8Nrs6k15Vw@mail.gmail.com>
 <1A9507C2-C1A4-4D77-A6A2-EE79D111F578@bluequartz.net>
 <57B084C5-869D-4074-BE60-54016738F139@mail.nih.gov>
 <A775F221-C42C-4620-AD54-4AF5D5241A64@bluequartz.net>
Message-ID: <AF4541FA-E535-4BCC-94E7-8A08232FF135@bluequartz.net>

On the advice from Matt we stripped out the ?Explicit? library code from SimpleITK and integrated it into DREAM.3D as a test and we were finally able to have  multiple plugins load ITK and use ITK functionality without casting errors. Not sure what we are going to do for a long term solution but it is obvious that we were missing a cast operation somewhere.

Thanks for all the help.
--
Mike Jackson  [mike.jackson at bluequartz.net]


> On Nov 2, 2015, at 4:36 PM, Michael Jackson <mike.jackson at bluequartz.net> wrote:
> 
> Your suspicions may be correct. We tried with a different filter (Sobel Edge) and get the following Exception from ITK:
> 
> "Failed to execute itk::SobelEdgeDetectionImageFilter filter. Error Message returned from ITK:
>      itk::ERROR: Image(0x7fb12a112f60): itk::ImageBase::CopyInformation() cannot cast PKN3itk10DataObjectE to PKN3itk9ImageBaseILj3EEE?
> 
> Does this help diagnosing the issue?
> 
> We have also found that if our actual application is linked against ITK then the code will execute without issues. If the application is NOT linked against ITK but instead only the plugin itself is linked against ITK then the code will fail when multiple plugins are linked against ITK.
> 
> Again, thanks for all the help.
> --
> Mike Jackson  [mike.jackson at bluequartz.net]
> 
> 
>> On Nov 2, 2015, at 1:12 PM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
>> 
>> I still think it's a failing dynamic cast some place.
>> 
>> You could try adding SimpleITK's Explicit library[1] which explicitly instantiates common types used in SimpleITK. Its possible having some of the Core Common classes instated in a shared library resolves the problem. The library should be fairly independent and easy to separate.
>> 
>> HTH,
>> Brad
>> 
>> [1] https://github.com/SimpleITK/SimpleITK/tree/master/Code/Explicit
>> 
>> On Nov 2, 2015, at 12:17 PM, Michael Jackson <mike.jackson at bluequartz.net> wrote:
>> 
>>> That did not seem to help either. Any more ideas? Does ITK build some intermediate static libraries that have ?managers? that load filters? I ran into an issue with our own code where we had static libraries with singleton ?manager? design patterns that turned out not to work due to each library getting its own singleton instance.
>>> --
>>> Mike Jackson  [mike.jackson at bluequartz.net]
>>> 
>>> 
>>>> On Oct 30, 2015, at 4:07 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>>> 
>>>> Thanks for the information.
>>>> 
>>>> It is hard to tell, but maybe it is related to factory registration.
>>>> To test, try this:
>>>> 
>>>> In the plugin CMake code, add
>>>> 
>>>> set(ITK_NO_IO_FACTORY_REGISTER_MANAGER 1)
>>>> 
>>>> before
>>>> 
>>>> include(${ITK_USE_FILE})
>>>> 
>>>> Then see if neither plugins work, both plugins work, and one of the
>>>> plugins works.
>>>> 
>>>> HTH,
>>>> Matt
>>>> 
>>>> On Fri, Oct 30, 2015 at 1:36 PM, Michael Jackson
>>>> <mike.jackson at bluequartz.net> wrote:
>>>>> Some more data. If we create an intermediate library that links to ITK, called ITKSupport, and then have our plugins link against ITKSupport then the code executes correctly. Just another data point.
>>>>> --
>>>>> Michael A. Jackson
>>>>> BlueQuartz Software, LLC
>>>>> [e]: mike.jackson at bluequartz.net
>>>>> 
>>>>>> On Oct 30, 2015, at 12:57 PM, Michael Jackson <mike.jackson at bluequartz.net> wrote:
>>>>>> 
>>>>>> Yes. Verified. Both plugins are built as part of DREAM.3D and we don?t put any extra CXX_FLAGS in any of the CMake files. We also built with VERBOSE=1 and looked at the compile commands to ensure that what we wanted was actually being used. Then we looked at the libraries themselves with otool -L to ensure they all link against libC++. Which they do.
>>>>>> 
>>>>>> 
>>>>>> --
>>>>>> Michael A. Jackson
>>>>>> BlueQuartz Software, LLC
>>>>>> [e]: mike.jackson at bluequartz.net
>>>>>> 
>>>>>>> On Oct 30, 2015, at 12:05 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>>>>>> 
>>>>>>> Hi Michael,
>>>>>>> 
>>>>>>> Sorry to be redundant, and just to be sure: are both A.plugin and
>>>>>>> B.plugin built with the same C++ standard library, OSX deployment
>>>>>>> target, and C++ standard?
>>>>>>> 
>>>>>>> Thanks,
>>>>>>> Matt
>>>>>>> 
>>>>>>> On Fri, Oct 30, 2015 at 11:35 AM, Michael Jackson
>>>>>>> <mike.jackson at bluequartz.net> wrote:
>>>>>>>> 
>>>>>>>> 
>>>>>>>>> On Oct 29, 2015, at 11:40 AM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>>>>>>>> 
>>>>>>>>> On Thu, Oct 29, 2015 at 10:00 AM, Michael Jackson
>>>>>>>>> <mike.jackson at bluequartz.net> wrote:
>>>>>>>>>> We also ran an experiment where we moved the ITK Dependency from just the
>>>>>>>>>> plugin down into one of our lower level libraries. So now we have the plugin
>>>>>>>>>> dependent on a lower level library which then is dependent on the ITK
>>>>>>>>>> Libraries. Now the code seems to execute and produce results. This was on OS
>>>>>>>>>> X 10.9 and 10.10. So it seems that there is some odd issue with loading the
>>>>>>>>>> ITK libraries through a plugin mechanism? Does ITK need the ?-fPIC? added to
>>>>>>>>>> the list of compile commands?
>>>>>>>>> 
>>>>>>>>> If ITK is built in a plugin as shared libraries, then it will already
>>>>>>>>> be built with -fPIC.
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>>> Qt is actually built WITHOUT C++11 support but still links against libc++.
>>>>>>>>>> They (the Qt Devs) set the OS X Min Deployment Version to 10.7. I have no
>>>>>>>>>> idea what that triggers or not.
>>>>>>>>> 
>>>>>>>>> All code should be built with the same C++ standard and OSX deployment
>>>>>>>>> target. When building ITK and related code, set
>>>>>>>>> CMAKE_OSX_DEPLOYMENT_TARGET [1] to 10.7 to ensure all binaries are
>>>>>>>>> using consistent libraries.
>>>>>>>>> 
>>>>>>>>> HTH,
>>>>>>>>> Matt
>>>>>>>>> 
>>>>>>>>> [1] https://cmake.org/cmake/help/v3.3/variable/CMAKE_OSX_DEPLOYMENT_TARGET.html
>>>>>>>> 
>>>>>>>> Matt,
>>>>>>>> We have verified that ALL dependent libraries are built with libC++, 10.7 as the min deployment, C++11 enabled. This goes for Boost, HDF5, Eigen, ITK, and Qt 5.5.1. We still have the issue. We can also reproduce that if we move the dependency to a lower level then the issue goes away. So it would seem that there is a problem with multiple plugins being dependent on the same External library. in this case it is ITK. I?ll try to diagram below.
>>>>>>>> ## Failure Mode ##
>>>>>>>> A.plugin depends on ITK
>>>>>>>> A.plugin depends on SIMPlib.
>>>>>>>> 
>>>>>>>> B.plugin depends on ITK
>>>>>>>> B.plugin depends on SIMPlib.
>>>>>>>> 
>>>>>>>> B.plugin will fail to execute properly.
>>>>>>>> 
>>>>>>>> ## Success Mode ##
>>>>>>>> A.plugin depends on SIMPlib.
>>>>>>>> SIMPlib depends on ITK
>>>>>>>> 
>>>>>>>> B.plugin depends on SIMPlib.
>>>>>>>> SIMPlib depends on ITK
>>>>>>>> 
>>>>>>>> The DREAM.3D filters both execute properly and give the proper output.
>>>>>>>> 
>>>>>>>> --
>>>>>>>> Michael A. Jackson
>>>>>>>> BlueQuartz Software, LLC
>>>>>>>> [e]: mike.jackson at bluequartz.net
>>>>>>>> _____________________________________
>>>>>>>> Powered by www.kitware.com
>>>>>>>> 
>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>> 
>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>> http://www.kitware.com/products/protraining.php
>>>>>>>> 
>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>> 
>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>> 
>>>>> 
>>> 
>>> _____________________________________
>>> Powered by www.kitware.com
>>> 
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>> 
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://www.kitware.com/products/protraining.php
>>> 
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>> 
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/insight-users
>> 
> 

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_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From matt.mccormick at kitware.com  Wed Nov  4 17:58:29 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 4 Nov 2015 17:58:29 -0500
Subject: [ITK] Opportunities to share, discuss, design,
 and learn with other ITK community members
Message-ID: <CALzTN-Rqxp=f=0-83Q-hRkFfUo0-QKLcxFSx9kRVg7paAALJpg@mail.gmail.com>

There are a couple of upcoming opportunities to share, discuss, design, and
learn with your fellow ITK community members.


On Thursday (tomorrow), 1:00 PM Eastern USA time, there will be a
Google+ Hangout
where we will be doing code reviews:

  https://plus.google.com/u/1/events/crmjgjc1ejrirog9dnmes31uu1o


On Friday, 11:00 AM Eastern USA time, an ITK development conference,

  https://plus.google.com/u/1/events/ce482fhdd7gghmrt66a9rhf1bkc


For those that cannot join via Hangout, telephone call-in is also possible.
Dial:

  585-632-6296

Enter pin:

  31423



To get regular invites to these events, join the ITK Bar Camp G+ Community:

  https://plus.google.com/u/0/communities/111375098792764998322



All are welcome.  Hope to talk to you then!

From brad at lowekamp.net  Wed Nov  4 18:02:58 2015
From: brad at lowekamp.net (Bradley Lowekamp)
Date: Wed, 4 Nov 2015 18:02:58 -0500
Subject: [ITK] [ITK-users]  Buffered Region out of Range error
In-Reply-To: <AF4541FA-E535-4BCC-94E7-8A08232FF135@bluequartz.net>
References: <C1CA0247-EC76-4677-8679-6A2867C7ED59@bluequartz.net>
 <CALzTN-S-xzRugHCgP6KeEfM7HzjxLXE7ONOSsQ+kTCutUT4mxQ@mail.gmail.com>
 <9D1176BA-4865-45C9-B499-234F66922463@bluequartz.net>
 <17C498DE-21D8-4EE5-BCD9-85286B8B9E50@mail.nih.gov>
 <B517CAFD-A291-4213-B507-D00447853697@bluequartz.net>
 <5EA71915-616F-4FFD-91E8-26941201051C@mail.nih.gov>
 <29375C19-58B7-4A9A-9B6D-EF79D51A7691@bluequartz.net>
 <CF65FCD6-70C6-440B-A4A2-1F5D2D183AF6@bluequartz.net>
 <CALzTN-RwaPUD_KvJDptjfXr84oX_uY7ig2pC0mE=e+0jUr+OzQ@mail.gmail.com>
 <DE6F155B-2295-46BE-AB01-F0B04EB37DC0@bluequartz.net>
 <CALzTN-QyFafJ-yibz+B3Qs6Xf-1XMLbjOYVKREi4ssrQVS1yBA@mail.gmail.com>
 <454718DB-56FA-4AC3-B1CF-59964ED9523B@bluequartz.net>
 <7EFC0503-D75F-4E0D-94F9-42679FBFF090@bluequartz.net>
 <CALzTN-QvbYv6z6oNdOS6atmMntu8T3scug7Ja9vf8Nrs6k15Vw@mail.gmail.com>
 <1A9507C2-C1A4-4D77-A6A2-EE79D111F578@bluequartz.net>
 <57B084C5-869D-4074-BE60-54016738F139@mail.nih.gov>
 <A775F221-C42C-4620-AD54-4AF5D5241A64@bluequartz.net>
 <AF4541FA-E535-4BCC-94E7-8A08232FF135@bluequartz.net>
Message-ID: <F3230EA6-FF87-4D98-9AEE-091CBA04DFA2@mail.nih.gov>

Glad to hear the recommendation worked for you. You likely can trim that library up a bit for your needs. 

> On Nov 4, 2015, at 5:56 PM, Michael Jackson <mike.jackson at bluequartz.net> wrote:
> 
> On the advice from Matt we stripped out the ?Explicit? library code from SimpleITK and integrated it into DREAM.3D as a test and we were finally able to have  multiple plugins load ITK and use ITK functionality without casting errors. Not sure what we are going to do for a long term solution but it is obvious that we were missing a cast operation somewhere.
> 
> Thanks for all the help.
> --
> Mike Jackson  [mike.jackson at bluequartz.net]
> 
> 
>> On Nov 2, 2015, at 4:36 PM, Michael Jackson <mike.jackson at bluequartz.net> wrote:
>> 
>> Your suspicions may be correct. We tried with a different filter (Sobel Edge) and get the following Exception from ITK:
>> 
>> "Failed to execute itk::SobelEdgeDetectionImageFilter filter. Error Message returned from ITK:
>>      itk::ERROR: Image(0x7fb12a112f60): itk::ImageBase::CopyInformation() cannot cast PKN3itk10DataObjectE to PKN3itk9ImageBaseILj3EEE?
>> 
>> Does this help diagnosing the issue?
>> 
>> We have also found that if our actual application is linked against ITK then the code will execute without issues. If the application is NOT linked against ITK but instead only the plugin itself is linked against ITK then the code will fail when multiple plugins are linked against ITK.
>> 
>> Again, thanks for all the help.
>> --
>> Mike Jackson  [mike.jackson at bluequartz.net]
>> 
>> 
>>> On Nov 2, 2015, at 1:12 PM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
>>> 
>>> I still think it's a failing dynamic cast some place.
>>> 
>>> You could try adding SimpleITK's Explicit library[1] which explicitly instantiates common types used in SimpleITK. Its possible having some of the Core Common classes instated in a shared library resolves the problem. The library should be fairly independent and easy to separate.
>>> 
>>> HTH,
>>> Brad
>>> 
>>> [1] https://github.com/SimpleITK/SimpleITK/tree/master/Code/Explicit
>>> 
>>>> On Nov 2, 2015, at 12:17 PM, Michael Jackson <mike.jackson at bluequartz.net> wrote:
>>>> 
>>>> That did not seem to help either. Any more ideas? Does ITK build some intermediate static libraries that have ?managers? that load filters? I ran into an issue with our own code where we had static libraries with singleton ?manager? design patterns that turned out not to work due to each library getting its own singleton instance.
>>>> --
>>>> Mike Jackson  [mike.jackson at bluequartz.net]
>>>> 
>>>> 
>>>>> On Oct 30, 2015, at 4:07 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>>>> 
>>>>> Thanks for the information.
>>>>> 
>>>>> It is hard to tell, but maybe it is related to factory registration.
>>>>> To test, try this:
>>>>> 
>>>>> In the plugin CMake code, add
>>>>> 
>>>>> set(ITK_NO_IO_FACTORY_REGISTER_MANAGER 1)
>>>>> 
>>>>> before
>>>>> 
>>>>> include(${ITK_USE_FILE})
>>>>> 
>>>>> Then see if neither plugins work, both plugins work, and one of the
>>>>> plugins works.
>>>>> 
>>>>> HTH,
>>>>> Matt
>>>>> 
>>>>> On Fri, Oct 30, 2015 at 1:36 PM, Michael Jackson
>>>>> <mike.jackson at bluequartz.net> wrote:
>>>>>> Some more data. If we create an intermediate library that links to ITK, called ITKSupport, and then have our plugins link against ITKSupport then the code executes correctly. Just another data point.
>>>>>> --
>>>>>> Michael A. Jackson
>>>>>> BlueQuartz Software, LLC
>>>>>> [e]: mike.jackson at bluequartz.net
>>>>>> 
>>>>>>> On Oct 30, 2015, at 12:57 PM, Michael Jackson <mike.jackson at bluequartz.net> wrote:
>>>>>>> 
>>>>>>> Yes. Verified. Both plugins are built as part of DREAM.3D and we don?t put any extra CXX_FLAGS in any of the CMake files. We also built with VERBOSE=1 and looked at the compile commands to ensure that what we wanted was actually being used. Then we looked at the libraries themselves with otool -L to ensure they all link against libC++. Which they do.
>>>>>>> 
>>>>>>> 
>>>>>>> --
>>>>>>> Michael A. Jackson
>>>>>>> BlueQuartz Software, LLC
>>>>>>> [e]: mike.jackson at bluequartz.net
>>>>>>> 
>>>>>>>> On Oct 30, 2015, at 12:05 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>>>>>>> 
>>>>>>>> Hi Michael,
>>>>>>>> 
>>>>>>>> Sorry to be redundant, and just to be sure: are both A.plugin and
>>>>>>>> B.plugin built with the same C++ standard library, OSX deployment
>>>>>>>> target, and C++ standard?
>>>>>>>> 
>>>>>>>> Thanks,
>>>>>>>> Matt
>>>>>>>> 
>>>>>>>> On Fri, Oct 30, 2015 at 11:35 AM, Michael Jackson
>>>>>>>> <mike.jackson at bluequartz.net> wrote:
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>>> On Oct 29, 2015, at 11:40 AM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>>>>>>>>> 
>>>>>>>>>> On Thu, Oct 29, 2015 at 10:00 AM, Michael Jackson
>>>>>>>>>> <mike.jackson at bluequartz.net> wrote:
>>>>>>>>>>> We also ran an experiment where we moved the ITK Dependency from just the
>>>>>>>>>>> plugin down into one of our lower level libraries. So now we have the plugin
>>>>>>>>>>> dependent on a lower level library which then is dependent on the ITK
>>>>>>>>>>> Libraries. Now the code seems to execute and produce results. This was on OS
>>>>>>>>>>> X 10.9 and 10.10. So it seems that there is some odd issue with loading the
>>>>>>>>>>> ITK libraries through a plugin mechanism? Does ITK need the ?-fPIC? added to
>>>>>>>>>>> the list of compile commands?
>>>>>>>>>> 
>>>>>>>>>> If ITK is built in a plugin as shared libraries, then it will already
>>>>>>>>>> be built with -fPIC.
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>>> Qt is actually built WITHOUT C++11 support but still links against libc++.
>>>>>>>>>>> They (the Qt Devs) set the OS X Min Deployment Version to 10.7. I have no
>>>>>>>>>>> idea what that triggers or not.
>>>>>>>>>> 
>>>>>>>>>> All code should be built with the same C++ standard and OSX deployment
>>>>>>>>>> target. When building ITK and related code, set
>>>>>>>>>> CMAKE_OSX_DEPLOYMENT_TARGET [1] to 10.7 to ensure all binaries are
>>>>>>>>>> using consistent libraries.
>>>>>>>>>> 
>>>>>>>>>> HTH,
>>>>>>>>>> Matt
>>>>>>>>>> 
>>>>>>>>>> [1] https://cmake.org/cmake/help/v3.3/variable/CMAKE_OSX_DEPLOYMENT_TARGET.html
>>>>>>>>> 
>>>>>>>>> Matt,
>>>>>>>>> We have verified that ALL dependent libraries are built with libC++, 10.7 as the min deployment, C++11 enabled. This goes for Boost, HDF5, Eigen, ITK, and Qt 5.5.1. We still have the issue. We can also reproduce that if we move the dependency to a lower level then the issue goes away. So it would seem that there is a problem with multiple plugins being dependent on the same External library. in this case it is ITK. I?ll try to diagram below.
>>>>>>>>> ## Failure Mode ##
>>>>>>>>> A.plugin depends on ITK
>>>>>>>>> A.plugin depends on SIMPlib.
>>>>>>>>> 
>>>>>>>>> B.plugin depends on ITK
>>>>>>>>> B.plugin depends on SIMPlib.
>>>>>>>>> 
>>>>>>>>> B.plugin will fail to execute properly.
>>>>>>>>> 
>>>>>>>>> ## Success Mode ##
>>>>>>>>> A.plugin depends on SIMPlib.
>>>>>>>>> SIMPlib depends on ITK
>>>>>>>>> 
>>>>>>>>> B.plugin depends on SIMPlib.
>>>>>>>>> SIMPlib depends on ITK
>>>>>>>>> 
>>>>>>>>> The DREAM.3D filters both execute properly and give the proper output.
>>>>>>>>> 
>>>>>>>>> --
>>>>>>>>> Michael A. Jackson
>>>>>>>>> BlueQuartz Software, LLC
>>>>>>>>> [e]: mike.jackson at bluequartz.net
>>>>>>>>> _____________________________________
>>>>>>>>> Powered by www.kitware.com
>>>>>>>>> 
>>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>> 
>>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>>> http://www.kitware.com/products/protraining.php
>>>>>>>>> 
>>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>> 
>>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>> 
>>>> _____________________________________
>>>> Powered by www.kitware.com
>>>> 
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>> 
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>> http://www.kitware.com/products/protraining.php
>>>> 
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>> 
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://public.kitware.com/mailman/listinfo/insight-users
> 
> _____________________________________
> Powered by www.kitware.com
> 
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
> 
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
> 
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
> 
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
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_____________________________________
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From kensuth at med.hokudai.ac.jp  Wed Nov  4 19:05:33 2015
From: kensuth at med.hokudai.ac.jp (Ken Sutherland)
Date: Thu, 5 Nov 2015 09:05:33 +0900
Subject: [ITK] [ITK-users]
	GeodesicActiveContourShapePriorLevelSetImageFilter
In-Reply-To: <56298E9F.9080301@med.hokudai.ac.jp>
References: <56298E9F.9080301@med.hokudai.ac.jp>
Message-ID: <563A9D4D.50605@med.hokudai.ac.jp>

Hi Everyone,

I have created a shape model of one of the bones of the hand. In the 
training images, some bones are short and fat and some are long and 
thin. Here is an animation of the segmentation process:

https://drive.google.com/file/d/0B30jBBgGrOnrN2otV2t1ZGtpakE/view?usp=sharing

In this example I'm trying to segment one of the long and thin bones. It 
seems to me that the prior shape image should change according to the 
statistics in the three principal component files.

Here is the mean image:

https://drive.google.com/file/d/0B30jBBgGrOnrb09NQ1l2QThvVU0/view?usp=sharing

Thank you for any help.

On 2015/10/23 10:34, Ken Sutherland wrote:
> Hi,
>
> I am trying to use GeodesicActiveContourShapePriorLevelSetImageFilter.
>
> I'm using the knee sample from "Create2DActiveShapeModel", with the 
> mean image and three principle component files. I then use one of the 
> training images as the target, so it should be an easy task. I'm using 
> all the default parameters from the sample code.
>
> I've created an animation by outputting the result image at each step 
> of the registration. The cyan image is the shape model, the white 
> image is the target that I am trying to segment. But it seems that the 
> shape is never changing, only the mean shape image is being used. It 
> shifts left, right, up, down and rotates, but never changes shape, no 
> matter how many iterations I run.
>
> Can anyone provide any insight?
>
> The animated GIF file is here:
> https://drive.google.com/file/d/0B30jBBgGrOnreEZGbDBHcmppZ1U/view?usp=sharing 
>
>
> The log file is here:
> https://drive.google.com/file/d/0B30jBBgGrOnrSjU4RDZvSEJEdm8/view?usp=sharing 
>
>
> Thanks!
>

-- 
Ken Sutherland
Hokkaido University
Graduate School of Medicine
Department of Medical Physics
kensuth at med.hokudai.ac.jp

_____________________________________
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Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From yassminabdallah at gmail.com  Wed Nov  4 20:01:16 2015
From: yassminabdallah at gmail.com (Yassmin)
Date: Wed, 4 Nov 2015 18:01:16 -0700 (MST)
Subject: [ITK] [ITK-users] Compile ITK for iPhone
Message-ID: <1446685276695-7588136.post@n2.nabble.com>

Hello,

i trying to build ITK for iPhone (xcode 6.3, itk 4.8.1, cmake 3.0.2, iOS 8)
but the tutorial i'm follow seems of out of date.

first it say, 

"in ITK SOURCE DIR/Utilities/vxl/core/vnl/vnl math.cxx, after line 77, add
the line #define finite(x) ? ? inline isfinited((double)x)"

but i can't find "ITK SOURCE DIR" and i don't know where to add the line ?


i compile it anyway and i face this,

//////////////////////////////////////////
 CMake Warning at

 /usr/local/Cellar/cmake/3.0.2/share/cmake/Modules/Platform/Darwin.cmake:179

 (message):

   Ignoring CMAKE_OSX_SYSROOT value:


/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer

 /SDKs/MacOSX10.10.sdk

   because the directory does not exist.

 Call Stack (most recent call first):


/usr/local/Cellar/cmake/3.0.2/share/cmake/Modules/CMakeSystemSpecificInformati

 on.cmake:36 (include)

   CMakeLists.txt:14 (project)



CMake Warning at
 /usr/local/Cellar/cmake/3.0.2/share/cmake/Modules/Platform/Darwin.cmake:179
 (message):
   Ignoring CMAKE_OSX_SYSROOT value:



/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer
 /SDKs/MacOSX10.10.sdk

   because the directory does not exist.
 Call Stack (most recent call first):


/usr/local/Cellar/cmake/3.0.2/share/cmake/Modules/CMakeSystemSpecificInformati
 on.cmake:36 (include)
   CMakeLists.txt:10 (PROJECT)
//////////////////////////////////////////


anyone compile ITK recently can help me with this please ?




--
View this message in context: http://itk-insight-users.2283740.n2.nabble.com/Compile-ITK-for-iPhone-tp7588136.html
Sent from the ITK Insight Users mailing list archive at Nabble.com.
_____________________________________
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Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

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http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From zhuangming.shen at sphic.org.cn  Thu Nov  5 01:09:20 2015
From: zhuangming.shen at sphic.org.cn (=?gb2312?B?yfLXr8P3?=)
Date: Thu, 5 Nov 2015 06:09:20 +0000
Subject: [ITK] [ITK-users] How to write the codes in python?
In-Reply-To: <CALzTN-Sy=HMRT-6fmq0N-L0R-wYpsaQS=eNP5u6YXH3rLb_91Q@mail.gmail.com>
References: <1446596266338.47108@sphic.org.cn>,
 <CALzTN-Sy=HMRT-6fmq0N-L0R-wYpsaQS=eNP5u6YXH3rLb_91Q@mail.gmail.com>
Message-ID: <1446703758686.88214@sphic.org.cn>

Hi Matt,

Thanks for your prompt response. BTW, How can I convert "ImageType::SpacingType spacing" and "ImageType::PointType origin" to Python? Currently, is there a manual or a website (e.g. like http://www.itk.org/Doxygen/html/) for me to get information on ITK using Python? Thanks again.

Regards,

Zhuangming Shen
________________________________________
From: Matt McCormick <matt.mccormick at kitware.com>
Sent: Wednesday, November 4, 2015 12:52 PM
To: ???
Cc: insight-users at itk.org
Subject: Re: [ITK-users] How to write the codes in python?

Hello Zhuangming,

Here is a gist:

  https://gist.github.com/thewtex/ce403fef7bc09ca5392d

Note that you should ensure that ITK_WRAP_unsigned_short is ON in your
CMake configuration.

HTH,
Matt

On Tue, Nov 3, 2015 at 7:17 PM, ??? <zhuangming.shen at sphic.org.cn> wrote:
> Hi all,
>
>
> I'd like to know how to convert Image1.cxx (see codes below) to python,
> especially "ImageType::RegionType region;". Could anyone give me some hints?
> Thanks in advance.
>
>
>
> typedef itk::Image<unsigned short, 3> ImageType;
>
> ImageType::Pointer image = ImageType::New();
>
>
> ImageType::IndexType start;
>
> start[0] = 0;
>
> start[1] = 0;
>
> start[2] = 0;
>
>
> ImageType::SizeType size;
>
> size[0] = 200;
>
> size[1] = 200;
>
> size[2] = 200;
>
>
> ImageType::RegionType region;
>
> region.SetSize(size);
>
> region.SetIndex(start);
>
>
> image->SetRegions(region);
>
> image->Allocate();
>
>
>
> Regards,
>
>
> Zhuangming Shen
>
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users

From a.tunde.szilagyi at gmail.com  Thu Nov  5 05:11:24 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Thu, 5 Nov 2015 11:11:24 +0100
Subject: [ITK] BUILD-ALL ITK RUN time?
Message-ID: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>

Dear All,

I would be interested what is the expected time to build all the ITK
libraries for the first time in Microsoft Visual Studio 14 2015. It shows
me that there 492 projects to build. It has been running for more then 17h
on a 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error message.
Perhaps I misunderstood this process?

Many thanks.

Best wishes,
Tunde Szilagyi
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From blowekamp at mail.nih.gov  Thu Nov  5 06:55:20 2015
From: blowekamp at mail.nih.gov (Bradley Lowekamp)
Date: Thu, 05 Nov 2015 06:55:20 -0500
Subject: [ITK] BUILD-ALL ITK RUN time?
In-Reply-To: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
Message-ID: <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>

Hello,

I don't think I have built ITK with the MS VS 12 2015 GUI. But I do have a dashboard build with the compiler:

https://open.cdash.org/buildSummary.php?buildid=4088244

This take about 3 hours, on a 4 core 4 GB memory virtual machine.

Perhaps you could try building from the command line with cmake?

cmake --build . --config Release


HTH,
Brad

On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com> wrote:

> Dear All,
> 
> I would be interested what is the expected time to build all the ITK libraries for the first time in Microsoft Visual Studio 14 2015. It shows me that there 492 projects to build. It has been running for more then 17h on a 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error message. Perhaps I misunderstood this process?
> 
> Many thanks.
> 
> Best wishes,
> Tunde Szilagyi
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community

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From a.tunde.szilagyi at gmail.com  Thu Nov  5 07:03:44 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Thu, 5 Nov 2015 13:03:44 +0100
Subject: [ITK] Fwd:  BUILD-ALL ITK RUN time?
In-Reply-To: <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
Message-ID: <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>

Dear Brad,

Thank you for your feedback. I figured out that my error occurs during
CMake Configuration. I have attached an error message that I receive. Files
from the same family are throwing this error - all start with
cmTC_XXXXX.exe (see attached Screen Shoot). If I ignore this and Build All
in MS Visual Studio the Debug and Release is not populated (And there are
no error messages either.). I would appreciate any insight into this.

Many thanks.
Tunde

On 5 November 2015 at 12:55, Bradley Lowekamp <blowekamp at mail.nih.gov>
wrote:

> Hello,
>
> I don't think I have built ITK with the MS VS 12 2015 GUI. But I do have a
> dashboard build with the compiler:
>
> https://open.cdash.org/buildSummary.php?buildid=4088244
>
> This take about 3 hours, on a 4 core 4 GB memory virtual machine.
>
> Perhaps you could try building from the command line with cmake?
>
> cmake --build . --config Release
>
>
>
> HTH,
> Brad
>
> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
> wrote:
>
> Dear All,
>
> I would be interested what is the expected time to build all the ITK
> libraries for the first time in Microsoft Visual Studio 14 2015. It shows
> me that there 492 projects to build. It has been running for more then 17h
> on a 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error message.
> Perhaps I misunderstood this process?
>
> Many thanks.
>
> Best wishes,
> Tunde Szilagyi
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
>
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From mlt.khawla at gmail.com  Thu Nov  5 09:39:19 2015
From: mlt.khawla at gmail.com (Daoued23)
Date: Thu, 5 Nov 2015 07:39:19 -0700 (MST)
Subject: [ITK] [ITK-users] Euler Number of 3D object
Message-ID: <1446734359688-36432.post@n7.nabble.com>

Hello everyone,
I am developping a 3D Hybrid Thinning algorithm, and i need to calculate the
euler number in order to preserve the object topology.

Does anyone happen to know if ITK can calculate the Euler number of a 3D
object? 

Thanks

Daoued23



--
View this message in context: http://itk-users.7.n7.nabble.com/Euler-Number-of-3D-object-tp36432.html
Sent from the ITK - Users mailing list archive at Nabble.com.
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From matt.mccormick at kitware.com  Thu Nov  5 10:22:09 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Thu, 5 Nov 2015 10:22:09 -0500
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
Message-ID: <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>

Hi Tunde,

A few pointers:

- Use ITK Git master [1], which has support for Visual Studio 2015
(support is not available in ITK 4.8.1).
- If wrapping is built, ITK Git master also builds much faster.
- Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
configuration to greatly improve the build time.

HTH,
Matt

[1] http://www.itk.org/Wiki/ITK/Git

On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
<a.tunde.szilagyi at gmail.com> wrote:
> Dear Brad,
>
> Thank you for your feedback. I figured out that my error occurs during CMake
> Configuration. I have attached an error message that I receive. Files from
> the same family are throwing this error - all start with cmTC_XXXXX.exe (see
> attached Screen Shoot). If I ignore this and Build All in MS Visual Studio
> the Debug and Release is not populated (And there are no error messages
> either.). I would appreciate any insight into this.
>
> Many thanks.
> Tunde
>
> On 5 November 2015 at 12:55, Bradley Lowekamp <blowekamp at mail.nih.gov>
> wrote:
>>
>> Hello,
>>
>> I don't think I have built ITK with the MS VS 12 2015 GUI. But I do have a
>> dashboard build with the compiler:
>>
>> https://open.cdash.org/buildSummary.php?buildid=4088244
>>
>> This take about 3 hours, on a 4 core 4 GB memory virtual machine.
>>
>> Perhaps you could try building from the command line with cmake?
>>
>> cmake --build . --config Release
>>
>>
>>
>> HTH,
>> Brad
>>
>> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
>> wrote:
>>
>> Dear All,
>>
>> I would be interested what is the expected time to build all the ITK
>> libraries for the first time in Microsoft Visual Studio 14 2015. It shows me
>> that there 492 projects to build. It has been running for more then 17h on a
>> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error message. Perhaps
>> I misunderstood this process?
>>
>> Many thanks.
>>
>> Best wishes,
>> Tunde Szilagyi
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>>
>>
>
>
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>

From matt.mccormick at kitware.com  Thu Nov  5 12:17:16 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Thu, 5 Nov 2015 12:17:16 -0500
Subject: [ITK] [ITK-users] How to write the codes in python?
In-Reply-To: <1446703758686.88214@sphic.org.cn>
References: <1446596266338.47108@sphic.org.cn>
 <CALzTN-Sy=HMRT-6fmq0N-L0R-wYpsaQS=eNP5u6YXH3rLb_91Q@mail.gmail.com>
 <1446703758686.88214@sphic.org.cn>
Message-ID: <CALzTN-TXuxn5yBYxmjjtd_uPFvk6jaJDqJFii371w35pnpg8gA@mail.gmail.com>

Hi Zhuangming Shen,

There is some documentation in the ITK Software Guide:

  http://itk.org/ITKSoftwareGuide/html/Book1/ITKSoftwareGuide-Book1ch3.html#x34-410003.7

Please review this patch, which add notes about .GetTypes() and type conversion:

  http://review.source.kitware.com/20362

Thanks,
Matt

On Thu, Nov 5, 2015 at 1:09 AM, ??? <zhuangming.shen at sphic.org.cn> wrote:
> Hi Matt,
>
> Thanks for your prompt response. BTW, How can I convert "ImageType::SpacingType spacing" and "ImageType::PointType origin" to Python? Currently, is there a manual or a website (e.g. like http://www.itk.org/Doxygen/html/) for me to get information on ITK using Python? Thanks again.
>
> Regards,
>
> Zhuangming Shen
> ________________________________________
> From: Matt McCormick <matt.mccormick at kitware.com>
> Sent: Wednesday, November 4, 2015 12:52 PM
> To: ???
> Cc: insight-users at itk.org
> Subject: Re: [ITK-users] How to write the codes in python?
>
> Hello Zhuangming,
>
> Here is a gist:
>
>   https://gist.github.com/thewtex/ce403fef7bc09ca5392d
>
> Note that you should ensure that ITK_WRAP_unsigned_short is ON in your
> CMake configuration.
>
> HTH,
> Matt
>
> On Tue, Nov 3, 2015 at 7:17 PM, ??? <zhuangming.shen at sphic.org.cn> wrote:
>> Hi all,
>>
>>
>> I'd like to know how to convert Image1.cxx (see codes below) to python,
>> especially "ImageType::RegionType region;". Could anyone give me some hints?
>> Thanks in advance.
>>
>>
>>
>> typedef itk::Image<unsigned short, 3> ImageType;
>>
>> ImageType::Pointer image = ImageType::New();
>>
>>
>> ImageType::IndexType start;
>>
>> start[0] = 0;
>>
>> start[1] = 0;
>>
>> start[2] = 0;
>>
>>
>> ImageType::SizeType size;
>>
>> size[0] = 200;
>>
>> size[1] = 200;
>>
>> size[2] = 200;
>>
>>
>> ImageType::RegionType region;
>>
>> region.SetSize(size);
>>
>> region.SetIndex(start);
>>
>>
>> image->SetRegions(region);
>>
>> image->Allocate();
>>
>>
>>
>> Regards,
>>
>>
>> Zhuangming Shen
>>
>>
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-users
>>
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

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From skalexander at gmail.com  Thu Nov  5 14:05:48 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Thu, 05 Nov 2015 19:05:48 +0000
Subject: [ITK] [ITK-dev] VS2015 and 4.8.1
Message-ID: <CAJFNcCQhsSOniFA1scibN=90qv+TwHrehC9Kqur0qw9taSkb6A@mail.gmail.com>

Has anyone successfully built and tested  4.8.1  64 bit with visual studio
2015 ?

Initial problem I've been getting is  cmake config issues (with 3.3.2, but
also previous) on string formats for 64 bit longs, so this may be a config
issue not to do with ITK specifically.
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From matt.mccormick at kitware.com  Thu Nov  5 14:22:13 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Thu, 5 Nov 2015 14:22:13 -0500
Subject: [ITK] [ITK-dev] VS2015 and 4.8.1
In-Reply-To: <CAJFNcCQhsSOniFA1scibN=90qv+TwHrehC9Kqur0qw9taSkb6A@mail.gmail.com>
References: <CAJFNcCQhsSOniFA1scibN=90qv+TwHrehC9Kqur0qw9taSkb6A@mail.gmail.com>
Message-ID: <CALzTN-QyhBkeYwR6NxbuNJSbfZ2EvQr4WHW7_7WVpA5czQ8TGQ@mail.gmail.com>

Hi Simon,

Please use ITK Git master or release branch, which contains the fix.
ITK 4.8.2 will be released soon.

  http://www.itk.org/Wiki/ITK/Git

Thanks,
Matt

On Thu, Nov 5, 2015 at 2:05 PM, Simon Alexander <skalexander at gmail.com> wrote:
> Has anyone successfully built and tested  4.8.1  64 bit with visual studio
> 2015 ?
>
> Initial problem I've been getting is  cmake config issues (with 3.3.2, but
> also previous) on string formats for 64 bit longs, so this may be a config
> issue not to do with ITK specifically.
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
_______________________________________________
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Kitware offers ITK Training Courses, for more information visit:
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From a.tunde.szilagyi at gmail.com  Thu Nov  5 14:47:07 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Thu, 5 Nov 2015 20:47:07 +0100
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
Message-ID: <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>

Hi Matt,

Thank you, this fixed some of the problems I was facing. Now I can build
some packages except the ITKNumerics, ITKStatistics and ITKFEM. I have
attached the error message that I received in CMAKE. There are no
explanations in the MS VS 2015 during build.

Many thanks in advance.

Tunde


On 5 November 2015 at 16:22, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Tunde,
>
> A few pointers:
>
> - Use ITK Git master [1], which has support for Visual Studio 2015
> (support is not available in ITK 4.8.1).
> - If wrapping is built, ITK Git master also builds much faster.
> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
> configuration to greatly improve the build time.
>
> HTH,
> Matt
>
> [1] http://www.itk.org/Wiki/ITK/Git
>
> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
> <a.tunde.szilagyi at gmail.com> wrote:
> > Dear Brad,
> >
> > Thank you for your feedback. I figured out that my error occurs during
> CMake
> > Configuration. I have attached an error message that I receive. Files
> from
> > the same family are throwing this error - all start with cmTC_XXXXX.exe
> (see
> > attached Screen Shoot). If I ignore this and Build All in MS Visual
> Studio
> > the Debug and Release is not populated (And there are no error messages
> > either.). I would appreciate any insight into this.
> >
> > Many thanks.
> > Tunde
> >
> > On 5 November 2015 at 12:55, Bradley Lowekamp <blowekamp at mail.nih.gov>
> > wrote:
> >>
> >> Hello,
> >>
> >> I don't think I have built ITK with the MS VS 12 2015 GUI. But I do
> have a
> >> dashboard build with the compiler:
> >>
> >> https://open.cdash.org/buildSummary.php?buildid=4088244
> >>
> >> This take about 3 hours, on a 4 core 4 GB memory virtual machine.
> >>
> >> Perhaps you could try building from the command line with cmake?
> >>
> >> cmake --build . --config Release
> >>
> >>
> >>
> >> HTH,
> >> Brad
> >>
> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
> >> wrote:
> >>
> >> Dear All,
> >>
> >> I would be interested what is the expected time to build all the ITK
> >> libraries for the first time in Microsoft Visual Studio 14 2015. It
> shows me
> >> that there 492 projects to build. It has been running for more then 17h
> on a
> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error message.
> Perhaps
> >> I misunderstood this process?
> >>
> >> Many thanks.
> >>
> >> Best wishes,
> >> Tunde Szilagyi
> >> _______________________________________________
> >> Community mailing list
> >> Community at itk.org
> >> http://public.kitware.com/mailman/listinfo/community
> >>
> >>
> >
> >
> >
> > _______________________________________________
> > Community mailing list
> > Community at itk.org
> > http://public.kitware.com/mailman/listinfo/community
> >
>
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From zack.galbreath at kitware.com  Thu Nov  5 14:50:13 2015
From: zack.galbreath at kitware.com (Zack Galbreath)
Date: Thu, 5 Nov 2015 14:50:13 -0500
Subject: [ITK] [ITK-dev] test the new CDash
Message-ID: <CANgkMA6Chp0Wh-9gOcR12=GWGRK7oB_c4gc9dxdMM9wZsJ4TGQ@mail.gmail.com>

This past weekend I attempted to roll out a new version of CDash's
index.php page.  It ended up performing too slowly and causing some user's
browsers to freeze up, particularly for VTK.  Since then I've spent some
time trying to improve its performance.

I'd appreciate feedback on how my latest version behaves for you:

http://testing.cdash.org/index.php?project=VTK
http://testing.cdash.org/index.php?project=Insight

You'll notice that each group only shows 10 builds at a time by default.
In addition to helping the page render more quickly, this change also makes
it easier to scroll to the bottom of the page where coverage & dynamic
analysis data reside.
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Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
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From matt.mccormick at kitware.com  Thu Nov  5 15:04:08 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Thu, 5 Nov 2015 15:04:08 -0500
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
Message-ID: <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>

Hi Tunde,

These CMake warnings are addressed by this patch:

  http://review.source.kitware.com/#/c/20154/1

which I just backported to the "release" branch. Please 'git pull' to
fetch the changes.

Please let the list know if there are any other issues.  According to
the dashboard, there are also some warnings to address:

   https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244

Patches for these warnings would be welcome :-)

Thanks,
Matt

On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
<a.tunde.szilagyi at gmail.com> wrote:
> Hi Matt,
>
> Thank you, this fixed some of the problems I was facing. Now I can build
> some packages except the ITKNumerics, ITKStatistics and ITKFEM. I have
> attached the error message that I received in CMAKE. There are no
> explanations in the MS VS 2015 during build.
>
> Many thanks in advance.
>
> Tunde
>
>
> On 5 November 2015 at 16:22, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Hi Tunde,
>>
>> A few pointers:
>>
>> - Use ITK Git master [1], which has support for Visual Studio 2015
>> (support is not available in ITK 4.8.1).
>> - If wrapping is built, ITK Git master also builds much faster.
>> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
>> configuration to greatly improve the build time.
>>
>> HTH,
>> Matt
>>
>> [1] http://www.itk.org/Wiki/ITK/Git
>>
>> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
>> <a.tunde.szilagyi at gmail.com> wrote:
>> > Dear Brad,
>> >
>> > Thank you for your feedback. I figured out that my error occurs during
>> > CMake
>> > Configuration. I have attached an error message that I receive. Files
>> > from
>> > the same family are throwing this error - all start with cmTC_XXXXX.exe
>> > (see
>> > attached Screen Shoot). If I ignore this and Build All in MS Visual
>> > Studio
>> > the Debug and Release is not populated (And there are no error messages
>> > either.). I would appreciate any insight into this.
>> >
>> > Many thanks.
>> > Tunde
>> >
>> > On 5 November 2015 at 12:55, Bradley Lowekamp <blowekamp at mail.nih.gov>
>> > wrote:
>> >>
>> >> Hello,
>> >>
>> >> I don't think I have built ITK with the MS VS 12 2015 GUI. But I do
>> >> have a
>> >> dashboard build with the compiler:
>> >>
>> >> https://open.cdash.org/buildSummary.php?buildid=4088244
>> >>
>> >> This take about 3 hours, on a 4 core 4 GB memory virtual machine.
>> >>
>> >> Perhaps you could try building from the command line with cmake?
>> >>
>> >> cmake --build . --config Release
>> >>
>> >>
>> >>
>> >> HTH,
>> >> Brad
>> >>
>> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
>> >> wrote:
>> >>
>> >> Dear All,
>> >>
>> >> I would be interested what is the expected time to build all the ITK
>> >> libraries for the first time in Microsoft Visual Studio 14 2015. It
>> >> shows me
>> >> that there 492 projects to build. It has been running for more then 17h
>> >> on a
>> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error message.
>> >> Perhaps
>> >> I misunderstood this process?
>> >>
>> >> Many thanks.
>> >>
>> >> Best wishes,
>> >> Tunde Szilagyi
>> >> _______________________________________________
>> >> Community mailing list
>> >> Community at itk.org
>> >> http://public.kitware.com/mailman/listinfo/community
>> >>
>> >>
>> >
>> >
>> >
>> > _______________________________________________
>> > Community mailing list
>> > Community at itk.org
>> > http://public.kitware.com/mailman/listinfo/community
>> >
>
>

From bill.lorensen at gmail.com  Thu Nov  5 15:09:41 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Thu, 5 Nov 2015 15:09:41 -0500
Subject: [ITK] [ITK-dev] test the new CDash
In-Reply-To: <CANgkMA6Chp0Wh-9gOcR12=GWGRK7oB_c4gc9dxdMM9wZsJ4TGQ@mail.gmail.com>
References: <CANgkMA6Chp0Wh-9gOcR12=GWGRK7oB_c4gc9dxdMM9wZsJ4TGQ@mail.gmail.com>
Message-ID: <CADZJ4hPX6GYoMyWNqPpX-P4bNgdUaZd_B-bkM=NB2PCe+dRaWg@mail.gmail.com>

It's fast for me on the browser that had trouble last weekend.


On Thu, Nov 5, 2015 at 2:50 PM, Zack Galbreath
<zack.galbreath at kitware.com> wrote:
> This past weekend I attempted to roll out a new version of CDash's index.php
> page.  It ended up performing too slowly and causing some user's browsers to
> freeze up, particularly for VTK.  Since then I've spent some time trying to
> improve its performance.
>
> I'd appreciate feedback on how my latest version behaves for you:
>
> http://testing.cdash.org/index.php?project=VTK
> http://testing.cdash.org/index.php?project=Insight
>
> You'll notice that each group only shows 10 builds at a time by default.  In
> addition to helping the page render more quickly, this change also makes it
> easier to scroll to the bottom of the page where coverage & dynamic analysis
> data reside.
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>



-- 
Unpaid intern in BillsBasement at noware dot com
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
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Please keep messages on-topic and check the ITK FAQ at:
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From matt.mccormick at kitware.com  Thu Nov  5 15:16:13 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Thu, 5 Nov 2015 15:16:13 -0500
Subject: [ITK] [ITK-dev] [vtk-developers]  test the new CDash
In-Reply-To: <CADZJ4hPX6GYoMyWNqPpX-P4bNgdUaZd_B-bkM=NB2PCe+dRaWg@mail.gmail.com>
References: <CANgkMA6Chp0Wh-9gOcR12=GWGRK7oB_c4gc9dxdMM9wZsJ4TGQ@mail.gmail.com>
 <CADZJ4hPX6GYoMyWNqPpX-P4bNgdUaZd_B-bkM=NB2PCe+dRaWg@mail.gmail.com>
Message-ID: <CALzTN-SJQ74ATHZS8oaLUa2yn_iLCt_QaHW9isnojrFhVF+NgQ@mail.gmail.com>

+1, much faster now.

Thank for the improvements!

Could the number of items displayed be made persistent across page
visits? I also noticed that going to the "Last" set is blank.

Thanks,
Matt

On Thu, Nov 5, 2015 at 3:09 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> It's fast for me on the browser that had trouble last weekend.
>
>
> On Thu, Nov 5, 2015 at 2:50 PM, Zack Galbreath
> <zack.galbreath at kitware.com> wrote:
>> This past weekend I attempted to roll out a new version of CDash's index.php
>> page.  It ended up performing too slowly and causing some user's browsers to
>> freeze up, particularly for VTK.  Since then I've spent some time trying to
>> improve its performance.
>>
>> I'd appreciate feedback on how my latest version behaves for you:
>>
>> http://testing.cdash.org/index.php?project=VTK
>> http://testing.cdash.org/index.php?project=Insight
>>
>> You'll notice that each group only shows 10 builds at a time by default.  In
>> addition to helping the page render more quickly, this change also makes it
>> easier to scroll to the bottom of the page where coverage & dynamic analysis
>> data reside.
>>
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>>
>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html
>
> Search the list archives at: http://markmail.org/search/?q=vtk-developers
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/vtk-developers
>
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From seun at rogue-research.com  Thu Nov  5 15:31:03 2015
From: seun at rogue-research.com (Seun Odutola)
Date: Thu, 5 Nov 2015 15:31:03 -0500
Subject: [ITK] [ITK-users] Issues with transitioning from ITK 3 to ITK 4
Message-ID: <94B6ADAE-C83D-476B-BD1D-D9E2FA97AF1D@rogue-research.com>

Hello Everyone,
 
        I was wondering if someone could point me in the right direction. I?m currently trying to transition from ITK 3 to ITK 4. However, I?m facing an issue with reading an Image file using the AnalyzeImageIO which was present in 3 and I believe deprecated in ITK 4. Can anyone tell me how to go about reading the files previously done by using the AnalyzeImageIO. 
Thanks

Regards,
    Seun

_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

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From zack.galbreath at kitware.com  Thu Nov  5 15:46:06 2015
From: zack.galbreath at kitware.com (Zack Galbreath)
Date: Thu, 5 Nov 2015 15:46:06 -0500
Subject: [ITK] [ITK-dev] [vtk-developers]  test the new CDash
In-Reply-To: <CALzTN-SJQ74ATHZS8oaLUa2yn_iLCt_QaHW9isnojrFhVF+NgQ@mail.gmail.com>
References: <CANgkMA6Chp0Wh-9gOcR12=GWGRK7oB_c4gc9dxdMM9wZsJ4TGQ@mail.gmail.com>
 <CADZJ4hPX6GYoMyWNqPpX-P4bNgdUaZd_B-bkM=NB2PCe+dRaWg@mail.gmail.com>
 <CALzTN-SJQ74ATHZS8oaLUa2yn_iLCt_QaHW9isnojrFhVF+NgQ@mail.gmail.com>
Message-ID: <CANgkMA5wVn50r2O83Gx0gBb7Q4VDyMunoRy71DpKE9j6bEVc1g@mail.gmail.com>

On Thu, Nov 5, 2015 at 3:16 PM, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Could the number of items displayed be made persistent across page
> visits?


Good suggestion.


I also noticed that going to the "Last" set is blank.
>

I see that now too, on the "Expected Nightly" section of the ITK dashboard.

I'll make sure to resolve both of these issues before pushing these changes
to open.cdash.org.  Thanks for the feedback.
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_______________________________________________
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Visit other Kitware open-source projects at
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Kitware offers ITK Training Courses, for more information visit:
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From zhuangming.shen at sphic.org.cn  Fri Nov  6 03:22:14 2015
From: zhuangming.shen at sphic.org.cn (=?gb2312?B?yfLXr8P3?=)
Date: Fri, 6 Nov 2015 08:22:14 +0000
Subject: [ITK] [ITK-users] How to write the codes in python?
In-Reply-To: <CALzTN-TXuxn5yBYxmjjtd_uPFvk6jaJDqJFii371w35pnpg8gA@mail.gmail.com>
References: <1446596266338.47108@sphic.org.cn>
 <CALzTN-Sy=HMRT-6fmq0N-L0R-wYpsaQS=eNP5u6YXH3rLb_91Q@mail.gmail.com>
 <1446703758686.88214@sphic.org.cn>,
 <CALzTN-TXuxn5yBYxmjjtd_uPFvk6jaJDqJFii371w35pnpg8gA@mail.gmail.com>
Message-ID: <1446798132287.85659@sphic.org.cn>

Hi Matt,

Thank you so much. By the way,the Python examples in InsightToolkit-4.8.1.tar.gz are out of date.  I currently could find a few Python examples supporting ITK 4.x from http://itk.org/ITKExamples/index.html.  Are there more examples available at the moment? Thanks again.

Regards,

Zhuangming Shen
________________________________________
From: Matt McCormick <matt.mccormick at kitware.com>
Sent: Friday, November 6, 2015 1:17 AM
To: ???
Cc: insight-users at itk.org
Subject: Re: [ITK-users] How to write the codes in python?

Hi Zhuangming Shen,

There is some documentation in the ITK Software Guide:

  http://itk.org/ITKSoftwareGuide/html/Book1/ITKSoftwareGuide-Book1ch3.html#x34-410003.7

Please review this patch, which add notes about .GetTypes() and type conversion:

  http://review.source.kitware.com/20362

Thanks,
Matt

On Thu, Nov 5, 2015 at 1:09 AM, ??? <zhuangming.shen at sphic.org.cn> wrote:
> Hi Matt,
>
> Thanks for your prompt response. BTW, How can I convert "ImageType::SpacingType spacing" and "ImageType::PointType origin" to Python? Currently, is there a manual or a website (e.g. like http://www.itk.org/Doxygen/html/) for me to get information on ITK using Python? Thanks again.
>
> Regards,
>
> Zhuangming Shen
> ________________________________________
> From: Matt McCormick <matt.mccormick at kitware.com>
> Sent: Wednesday, November 4, 2015 12:52 PM
> To: ???
> Cc: insight-users at itk.org
> Subject: Re: [ITK-users] How to write the codes in python?
>
> Hello Zhuangming,
>
> Here is a gist:
>
>   https://gist.github.com/thewtex/ce403fef7bc09ca5392d
>
> Note that you should ensure that ITK_WRAP_unsigned_short is ON in your
> CMake configuration.
>
> HTH,
> Matt
>
> On Tue, Nov 3, 2015 at 7:17 PM, ??? <zhuangming.shen at sphic.org.cn> wrote:
>> Hi all,
>>
>>
>> I'd like to know how to convert Image1.cxx (see codes below) to python,
>> especially "ImageType::RegionType region;". Could anyone give me some hints?
>> Thanks in advance.
>>
>>
>>
>> typedef itk::Image<unsigned short, 3> ImageType;
>>
>> ImageType::Pointer image = ImageType::New();
>>
>>
>> ImageType::IndexType start;
>>
>> start[0] = 0;
>>
>> start[1] = 0;
>>
>> start[2] = 0;
>>
>>
>> ImageType::SizeType size;
>>
>> size[0] = 200;
>>
>> size[1] = 200;
>>
>> size[2] = 200;
>>
>>
>> ImageType::RegionType region;
>>
>> region.SetSize(size);
>>
>> region.SetIndex(start);
>>
>>
>> image->SetRegions(region);
>>
>> image->Allocate();
>>
>>
>>
>> Regards,
>>
>>
>> Zhuangming Shen
>>
>>
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-users
>>
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users

From a.tunde.szilagyi at gmail.com  Fri Nov  6 07:04:20 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Fri, 6 Nov 2015 13:04:20 +0100
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
Message-ID: <CAMeM8yaOn0pC8S0JNVxCDOmz-1eOXtbsMmGSv9mZVENSnFwjBA@mail.gmail.com>

Hi All,

It was very kind of Matt that he gave an instant reply. Unfortunately, I do
not have a good command of Git and I would appreciate if someone could give
some more/detailed guidance on how I could perform the suggested updates.

Many thanks in advance.

Best wishes,
Tunde

On 5 November 2015 at 21:04, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Tunde,
>
> These CMake warnings are addressed by this patch:
>
>   http://review.source.kitware.com/#/c/20154/1
>
> which I just backported to the "release" branch. Please 'git pull' to
> fetch the changes.
>
> Please let the list know if there are any other issues.  According to
> the dashboard, there are also some warnings to address:
>
>    https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
>
> Patches for these warnings would be welcome :-)
>
> Thanks,
> Matt
>
> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
> <a.tunde.szilagyi at gmail.com> wrote:
> > Hi Matt,
> >
> > Thank you, this fixed some of the problems I was facing. Now I can build
> > some packages except the ITKNumerics, ITKStatistics and ITKFEM. I have
> > attached the error message that I received in CMAKE. There are no
> > explanations in the MS VS 2015 during build.
> >
> > Many thanks in advance.
> >
> > Tunde
> >
> >
> > On 5 November 2015 at 16:22, Matt McCormick <matt.mccormick at kitware.com>
> > wrote:
> >>
> >> Hi Tunde,
> >>
> >> A few pointers:
> >>
> >> - Use ITK Git master [1], which has support for Visual Studio 2015
> >> (support is not available in ITK 4.8.1).
> >> - If wrapping is built, ITK Git master also builds much faster.
> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
> >> configuration to greatly improve the build time.
> >>
> >> HTH,
> >> Matt
> >>
> >> [1] http://www.itk.org/Wiki/ITK/Git
> >>
> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> > Dear Brad,
> >> >
> >> > Thank you for your feedback. I figured out that my error occurs during
> >> > CMake
> >> > Configuration. I have attached an error message that I receive. Files
> >> > from
> >> > the same family are throwing this error - all start with
> cmTC_XXXXX.exe
> >> > (see
> >> > attached Screen Shoot). If I ignore this and Build All in MS Visual
> >> > Studio
> >> > the Debug and Release is not populated (And there are no error
> messages
> >> > either.). I would appreciate any insight into this.
> >> >
> >> > Many thanks.
> >> > Tunde
> >> >
> >> > On 5 November 2015 at 12:55, Bradley Lowekamp <blowekamp at mail.nih.gov
> >
> >> > wrote:
> >> >>
> >> >> Hello,
> >> >>
> >> >> I don't think I have built ITK with the MS VS 12 2015 GUI. But I do
> >> >> have a
> >> >> dashboard build with the compiler:
> >> >>
> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
> >> >>
> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual machine.
> >> >>
> >> >> Perhaps you could try building from the command line with cmake?
> >> >>
> >> >> cmake --build . --config Release
> >> >>
> >> >>
> >> >>
> >> >> HTH,
> >> >> Brad
> >> >>
> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi <
> a.tunde.szilagyi at gmail.com>
> >> >> wrote:
> >> >>
> >> >> Dear All,
> >> >>
> >> >> I would be interested what is the expected time to build all the ITK
> >> >> libraries for the first time in Microsoft Visual Studio 14 2015. It
> >> >> shows me
> >> >> that there 492 projects to build. It has been running for more then
> 17h
> >> >> on a
> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error message.
> >> >> Perhaps
> >> >> I misunderstood this process?
> >> >>
> >> >> Many thanks.
> >> >>
> >> >> Best wishes,
> >> >> Tunde Szilagyi
> >> >> _______________________________________________
> >> >> Community mailing list
> >> >> Community at itk.org
> >> >> http://public.kitware.com/mailman/listinfo/community
> >> >>
> >> >>
> >> >
> >> >
> >> >
> >> > _______________________________________________
> >> > Community mailing list
> >> > Community at itk.org
> >> > http://public.kitware.com/mailman/listinfo/community
> >> >
> >
> >
>
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From dzenanz at gmail.com  Fri Nov  6 08:38:04 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Fri, 6 Nov 2015 08:38:04 -0500
Subject: [ITK] [ITK-users] How can I remove overlapped MRI DICOM images
	from	the data?
In-Reply-To: <1446494602425-7588120.post@n2.nabble.com>
References: <1446494602425-7588120.post@n2.nabble.com>
Message-ID: <CAPf2UMRuR+_D8Kaq1NVL6O5Jbe_o8MEhyvOud0dKmaaHbxHP_w@mail.gmail.com>

Your solution will depend on what positions are assigned to images arising
from different coils. I suspect you will have to manipulate position and
orientation. Take a look at this example and links therein:
http://itk.org/ITKExamples/src/Filtering/ImageGrid/AppendTwo3DVolumes/Documentation.html

HTH

On Mon, Nov 2, 2015 at 3:03 PM, lucky via Insight-users <
insight-users at itk.org> wrote:

> I have a data set of MRI DICOM images that was scanned using Torso/Body
> Coil.
> We used multiple slabs of the coil to scanned the full arm. In the
> finalized
> data, we have the overlapped region/images of sequences, we want to remove
> those overlapped images from the data set. Of course, we will want to use
> the high quality image and discard the noisy one if there is a overlap of
> two.
>
> My first question is,
>
> How can we distinguish the overlapped image from the DICOM data set? There
> is one metadata "0020|0032 "Image Position Patient" that can be used for
> this, but is there anything else that I can use?
>
> My second question is,
>
> Is there any way/algorithm in ITK that can remove/delete the overlapped
> images and save after that as new data set? I would also need to rearrange
> the "vtkImageData*" in order to visualize the final data set without any
> overlapped regions?
>
> third question,
>
> Is there anything similar to what I want to achieve in 3D Slicer 4.4.
>
> I have my own visualizer that is written in C++, ITK, VTK, so it would be
> great if I can use something from ITK. Can anyone point me out what
> features
> of ITK do I need to consider to remove/delete overlapped images and save
> the
> remaining images as a new data set? I am also confused about what images do
> I need to remove Axial only? Images were scanned as Axial.
>
> Thanks,
>
>
>
> --
> View this message in context:
> http://itk-insight-users.2283740.n2.nabble.com/How-can-I-remove-overlapped-MRI-DICOM-images-from-the-data-tp7588120.html
> Sent from the ITK Insight Users mailing list archive at Nabble.com.
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
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_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
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Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
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From dzenanz at gmail.com  Fri Nov  6 08:43:00 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Fri, 6 Nov 2015 08:43:00 -0500
Subject: [ITK] [ITK-users] Euler Number of 3D object
In-Reply-To: <1446734359688-36432.post@n7.nabble.com>
References: <1446734359688-36432.post@n7.nabble.com>
Message-ID: <CAPf2UMQ-r4o7oK2K6yShi3uF8TH9FGyjkPH3PssHpER+ayFu_w@mail.gmail.com>

Hi Daoued,

Will this class be sufficient:
http://www.itk.org/Doxygen/html/classitk_1_1QuadEdgeMeshTopologyChecker.html
If not, you could modify it to suit your needs.

Regards,
D?enan

On Thu, Nov 5, 2015 at 9:39 AM, Daoued23 <mlt.khawla at gmail.com> wrote:

> Hello everyone,
> I am developping a 3D Hybrid Thinning algorithm, and i need to calculate
> the
> euler number in order to preserve the object topology.
>
> Does anyone happen to know if ITK can calculate the Euler number of a 3D
> object?
>
> Thanks
>
> Daoued23
>
>
>
> --
> View this message in context:
> http://itk-users.7.n7.nabble.com/Euler-Number-of-3D-object-tp36432.html
> Sent from the ITK - Users mailing list archive at Nabble.com.
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
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_____________________________________
Powered by www.kitware.com

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Kitware offers ITK Training Courses, for more information visit:
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Please keep messages on-topic and check the ITK FAQ at:
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From dzenanz at gmail.com  Fri Nov  6 08:45:25 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Fri, 6 Nov 2015 08:45:25 -0500
Subject: [ITK] [ITK-users] Issues with transitioning from ITK 3 to ITK 4
In-Reply-To: <94B6ADAE-C83D-476B-BD1D-D9E2FA97AF1D@rogue-research.com>
References: <94B6ADAE-C83D-476B-BD1D-D9E2FA97AF1D@rogue-research.com>
Message-ID: <CAPf2UMS7+9nFx6JKqbpiu-bMTBDAYng=ojcWZejL980hvM-A_Q@mail.gmail.com>

Hi Seun,

this question might be basic, but have you tried reading it the normal way
(using itk::ImageFileReader
<http://www.itk.org/Doxygen/html/classitk_1_1ImageFileReader.html>)?

Regards,
D?enan

On Thu, Nov 5, 2015 at 3:31 PM, Seun Odutola <seun at rogue-research.com>
wrote:

> Hello Everyone,
>
>         I was wondering if someone could point me in the right direction.
> I?m currently trying to transition from ITK 3 to ITK 4. However, I?m facing
> an issue with reading an Image file using the AnalyzeImageIO which was
> present in 3 and I believe deprecated in ITK 4. Can anyone tell me how to
> go about reading the files previously done by using the AnalyzeImageIO.
> Thanks
>
> Regards,
>     Seun
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
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Powered by www.kitware.com

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Kitware offers ITK Training Courses, for more information visit:
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Please keep messages on-topic and check the ITK FAQ at:
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From yassminabdallah at gmail.com  Fri Nov  6 09:15:43 2015
From: yassminabdallah at gmail.com (Yassmin)
Date: Fri, 6 Nov 2015 07:15:43 -0700 (MST)
Subject: [ITK] [ITK-users] Compile ITK for iPhone
In-Reply-To: <1446685276695-7588136.post@n2.nabble.com>
References: <1446685276695-7588136.post@n2.nabble.com>
Message-ID: <1446819343470-7588145.post@n2.nabble.com>

any recommendation please?



--
View this message in context: http://itk-insight-users.2283740.n2.nabble.com/Compile-ITK-for-iPhone-tp7588136p7588145.html
Sent from the ITK Insight Users mailing list archive at Nabble.com.
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
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http://www.itk.org/Wiki/ITK_FAQ

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From matt.mccormick at kitware.com  Fri Nov  6 10:49:00 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 6 Nov 2015 10:49:00 -0500
Subject: [ITK] [ITK-users] How to write the codes in python?
In-Reply-To: <1446798132287.85659@sphic.org.cn>
References: <1446596266338.47108@sphic.org.cn>
 <CALzTN-Sy=HMRT-6fmq0N-L0R-wYpsaQS=eNP5u6YXH3rLb_91Q@mail.gmail.com>
 <1446703758686.88214@sphic.org.cn>
 <CALzTN-TXuxn5yBYxmjjtd_uPFvk6jaJDqJFii371w35pnpg8gA@mail.gmail.com>
 <1446798132287.85659@sphic.org.cn>
Message-ID: <CALzTN-RSKuOYZqQWgeEKTYAWCcf0L5skLwhcFC4tWpA1VvHkeQ@mail.gmail.com>

Hi,

Yes, some of the Python examples in the ITK repository have been
updated for ITK 4.9 in Git master.  But, more examples with Python
versions should be added to http://itk.org/ITKExamples/index.html
going forward.

Thanks,
Matt




On Fri, Nov 6, 2015 at 3:22 AM, ??? <zhuangming.shen at sphic.org.cn> wrote:
> Hi Matt,
>
> Thank you so much. By the way,the Python examples in InsightToolkit-4.8.1.tar.gz are out of date.  I currently could find a few Python examples supporting ITK 4.x from http://itk.org/ITKExamples/index.html.  Are there more examples available at the moment? Thanks again.
>
> Regards,
>
> Zhuangming Shen
> ________________________________________
> From: Matt McCormick <matt.mccormick at kitware.com>
> Sent: Friday, November 6, 2015 1:17 AM
> To: ???
> Cc: insight-users at itk.org
> Subject: Re: [ITK-users] How to write the codes in python?
>
> Hi Zhuangming Shen,
>
> There is some documentation in the ITK Software Guide:
>
>   http://itk.org/ITKSoftwareGuide/html/Book1/ITKSoftwareGuide-Book1ch3.html#x34-410003.7
>
> Please review this patch, which add notes about .GetTypes() and type conversion:
>
>   http://review.source.kitware.com/20362
>
> Thanks,
> Matt
>
> On Thu, Nov 5, 2015 at 1:09 AM, ??? <zhuangming.shen at sphic.org.cn> wrote:
>> Hi Matt,
>>
>> Thanks for your prompt response. BTW, How can I convert "ImageType::SpacingType spacing" and "ImageType::PointType origin" to Python? Currently, is there a manual or a website (e.g. like http://www.itk.org/Doxygen/html/) for me to get information on ITK using Python? Thanks again.
>>
>> Regards,
>>
>> Zhuangming Shen
>> ________________________________________
>> From: Matt McCormick <matt.mccormick at kitware.com>
>> Sent: Wednesday, November 4, 2015 12:52 PM
>> To: ???
>> Cc: insight-users at itk.org
>> Subject: Re: [ITK-users] How to write the codes in python?
>>
>> Hello Zhuangming,
>>
>> Here is a gist:
>>
>>   https://gist.github.com/thewtex/ce403fef7bc09ca5392d
>>
>> Note that you should ensure that ITK_WRAP_unsigned_short is ON in your
>> CMake configuration.
>>
>> HTH,
>> Matt
>>
>> On Tue, Nov 3, 2015 at 7:17 PM, ??? <zhuangming.shen at sphic.org.cn> wrote:
>>> Hi all,
>>>
>>>
>>> I'd like to know how to convert Image1.cxx (see codes below) to python,
>>> especially "ImageType::RegionType region;". Could anyone give me some hints?
>>> Thanks in advance.
>>>
>>>
>>>
>>> typedef itk::Image<unsigned short, 3> ImageType;
>>>
>>> ImageType::Pointer image = ImageType::New();
>>>
>>>
>>> ImageType::IndexType start;
>>>
>>> start[0] = 0;
>>>
>>> start[1] = 0;
>>>
>>> start[2] = 0;
>>>
>>>
>>> ImageType::SizeType size;
>>>
>>> size[0] = 200;
>>>
>>> size[1] = 200;
>>>
>>> size[2] = 200;
>>>
>>>
>>> ImageType::RegionType region;
>>>
>>> region.SetSize(size);
>>>
>>> region.SetIndex(start);
>>>
>>>
>>> image->SetRegions(region);
>>>
>>> image->Allocate();
>>>
>>>
>>>
>>> Regards,
>>>
>>>
>>> Zhuangming Shen
>>>
>>>
>>> _____________________________________
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://www.kitware.com/products/protraining.php
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users

From simpsona at gmail.com  Fri Nov  6 13:38:47 2015
From: simpsona at gmail.com (Amber Simpson)
Date: Fri, 6 Nov 2015 13:38:47 -0500
Subject: [ITK] problems installing ITK 4.8.1 on OS X 10.9.5
Message-ID: <CAMj5ekGNhyMqQJ66rcZ83XvJBG1NG+EqLubKqJ9UX+wMF6frtQ@mail.gmail.com>

Hi All,

I'm having trouble compiling ITK, specifically itkvtkglue (see below),
using VTK 6.3.0 and CMake 3.4.0-rc3. CMakeCache.txt is attached. Any
suggestions?

Thanks,
Amber


-----------------


[ 99%] Built target ITKSpatialFunction-all

[ 99%] Built target itkTestDriver

[ 99%] Built target ITKTestKernel-all

[ 99%] Built target ITKVTK

[ 99%] Built target ITKVTK-all

[ 99%] Built target ITKVideoCore

[ 99%] Built target ITKVideoCore-all

[ 99%] Built target ITKVideoFiltering-all

[100%] Built target ITKVideoIO

[100%] Built target ITKVideoIO-all

[100%] Built target ITKVoronoi-all

[100%] Building CXX object
Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/QuickView.cxx.o

*/Users/simpsonl/Software/ITK-4.8.1/Modules/Bridge/VtkGlue/src/QuickView.cxx:25:10:
**fatal error: **'vtkVersion.h' file not*

*      found*

#include "vtkVersion.h"

*         ^*

1 error generated.

make[2]: ***
[Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/QuickView.cxx.o]
Error 1

make[1]: *** [Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/all]
Error 2

make: *** [all] Error 2
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://public.kitware.com/pipermail/community/attachments/20151106/63a3ada0/attachment-0001.html>
-------------- next part --------------
# This is the CMakeCache file.
# For build in directory: /Users/simpsonl/Software/ITKBuild
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# You can edit this file to change values found and used by cmake.
# If you do not want to change any of the values, simply exit the editor.
# If you do want to change a value, simply edit, save, and exit the editor.
# The syntax for the file is as follows:
# KEY:TYPE=VALUE
# KEY is the name of a variable in the cache.
# TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!.
# VALUE is the current value for the KEY.

########################
# EXTERNAL cache entries
########################

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BUILD_DOCUMENTATION:BOOL=OFF

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BUILD_EXAMPLES:BOOL=OFF

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BUILD_SHARED_LIBS:BOOL=ON

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BUILD_TESTING:BOOL=OFF

//Path to a program.
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//No help, variable specified on the command line.
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//Flags used by the compiler during debug builds.
CMAKE_CXX_FLAGS_DEBUG:STRING=-g

//Flags used by the compiler during release builds for minimum
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CMAKE_CXX_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG

//Flags used by the compiler during release builds.
CMAKE_CXX_FLAGS_RELEASE:STRING=-O3 -DNDEBUG

//Flags used by the compiler during release builds with debug info.
CMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=-O2 -g -DNDEBUG

//C compiler
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CMAKE_C_FLAGS:STRING=

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CMAKE_C_FLAGS_DEBUG:STRING=-g

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// size.
CMAKE_C_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG

//Flags used by the compiler during release builds.
CMAKE_C_FLAGS_RELEASE:STRING=-O3 -DNDEBUG

//Flags used by the compiler during release builds with debug info.
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//Flags used by the linker during release builds.
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//Flags used by the linker during Release with Debug Info builds.
CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO:STRING=

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CMAKE_OSX_SYSROOT:PATH=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk

//Value Computed by CMake
CMAKE_PROJECT_NAME:STATIC=ITK

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//Flags used by the linker during Release with Debug Info builds.
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//Flags used by the linker during Release with Debug Info builds.
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//Enable to build OSX bundles
CPACK_BINARY_BUNDLE:BOOL=OFF

//Enable to build Debian packages
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//Enable to build IFW packages
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CPACK_BINARY_NSIS:BOOL=OFF

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C_HAS_WARNING-Wformat:UNINITIALIZED=2:INTERNAL=1

//Path to a library.
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//Value Computed by CMake
FilteringExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/Filtering

//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Build with library install_name set to the installation path
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
HDF5_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/HDF5/src/itkhdf5

//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
IOExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/IO

//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Dependencies for the target
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Dependencies for the target
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//Value Computed by CMake
ITKBioCell_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/BioCell

//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Dependencies for the target
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
ITKDICOMParser_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/DICOMParser

//Dependencies for target
ITKDICOMParser_LIB_DEPENDS:STATIC=

//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
ITKDenoising_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/Denoising

//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
ITKDisplacementField_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/DisplacementField

//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
ITKDoubleConversion_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/DoubleConversion

//Value Computed by CMake
ITKDoubleConversion_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/DoubleConversion

//Dependencies for target
ITKEXPAT_LIB_DEPENDS:STATIC=

//Value Computed by CMake
ITKEigen_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/Eigen

//Value Computed by CMake
ITKEigen_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/Eigen

//Value Computed by CMake
ITKExpat_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/Expat

//Value Computed by CMake
ITKExpat_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/Expat

//Value Computed by CMake
ITKFEMRegistration_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/FEM

//Value Computed by CMake
ITKFEMRegistration_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/FEM

//Value Computed by CMake
ITKFEM_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/FEM

//Dependencies for the target
ITKFEM_LIB_DEPENDS:STATIC=general;ITKMetaIO;general;ITKCommon;general;ITKStatistics;general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKOptimizers;

//Value Computed by CMake
ITKFEM_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/FEM

//Value Computed by CMake
ITKFFT_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/FFT

//Value Computed by CMake
ITKFFT_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/FFT

//Value Computed by CMake
ITKFastMarching_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/FastMarching

//Value Computed by CMake
ITKFastMarching_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/FastMarching

//Value Computed by CMake
ITKFiniteDifference_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/FiniteDifference

//Value Computed by CMake
ITKFiniteDifference_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/FiniteDifference

//Value Computed by CMake
ITKGDCM_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/GDCM

//Value Computed by CMake
ITKGDCM_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/GDCM

//Value Computed by CMake
ITKGIFTI_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/GIFTI

//Value Computed by CMake
ITKGIFTI_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/GIFTI

//Value Computed by CMake
ITKGPUAnisotropicSmoothing_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/GPUAnisotropicSmoothing

//Value Computed by CMake
ITKGPUAnisotropicSmoothing_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/GPUAnisotropicSmoothing

//Value Computed by CMake
ITKGPUCommon_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/GPUCommon

//Value Computed by CMake
ITKGPUCommon_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/GPUCommon

//Value Computed by CMake
ITKGPUFiniteDifference_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/GPUFiniteDifference

//Value Computed by CMake
ITKGPUFiniteDifference_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/GPUFiniteDifference

//Value Computed by CMake
ITKGPUImageFilterBase_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/GPUImageFilterBase

//Value Computed by CMake
ITKGPUImageFilterBase_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/GPUImageFilterBase

//Value Computed by CMake
ITKGPUPDEDeformable_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/GPUPDEDeformable

//Value Computed by CMake
ITKGPUPDEDeformable_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/GPUPDEDeformable

//Value Computed by CMake
ITKGPURegistrationCommon_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/GPUCommon

//Value Computed by CMake
ITKGPURegistrationCommon_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/GPUCommon

//Value Computed by CMake
ITKGPUSmoothing_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/GPUSmoothing

//Value Computed by CMake
ITKGPUSmoothing_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/GPUSmoothing

//Value Computed by CMake
ITKGPUThresholding_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/GPUThresholding

//Value Computed by CMake
ITKGPUThresholding_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/GPUThresholding

//Value Computed by CMake
ITKHDF5_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/HDF5

//Value Computed by CMake
ITKHDF5_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/HDF5

//Value Computed by CMake
ITKIOBMP_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/BMP

//Dependencies for the target
ITKIOBMP_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOBMP_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/BMP

//Value Computed by CMake
ITKIOBioRad_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/BioRad

//Dependencies for the target
ITKIOBioRad_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOBioRad_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/BioRad

//Value Computed by CMake
ITKIOCSV_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/CSV

//Dependencies for the target
ITKIOCSV_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOCSV_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/CSV

//Value Computed by CMake
ITKIOGDCM_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/GDCM

//Dependencies for the target
ITKIOGDCM_LIB_DEPENDS:STATIC=general;gdcmDICT;general;gdcmMSFF;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOGDCM_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/GDCM

//Value Computed by CMake
ITKIOGE_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/GE

//Dependencies for the target
ITKIOGE_LIB_DEPENDS:STATIC=general;ITKIOIPL;

//Value Computed by CMake
ITKIOGE_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/GE

//Value Computed by CMake
ITKIOGIPL_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/GIPL

//Dependencies for the target
ITKIOGIPL_LIB_DEPENDS:STATIC=general;ITKIOImageBase;general;itkzlib;

//Value Computed by CMake
ITKIOGIPL_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/GIPL

//Value Computed by CMake
ITKIOHDF5_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/HDF5

//Dependencies for the target
ITKIOHDF5_LIB_DEPENDS:STATIC=general;itkhdf5_cpp;general;itkhdf5;general;ITKIOImageBase;general;itkhdf5_cpp;general;itkhdf5;

//Value Computed by CMake
ITKIOHDF5_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/HDF5

//Value Computed by CMake
ITKIOIPL_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/IPL

//Dependencies for the target
ITKIOIPL_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOIPL_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/IPL

//Value Computed by CMake
ITKIOImageBase_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/ImageBase

//Dependencies for the target
ITKIOImageBase_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKIOImageBase_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/ImageBase

//Value Computed by CMake
ITKIOJPEG_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/JPEG

//Dependencies for the target
ITKIOJPEG_LIB_DEPENDS:STATIC=general;itkjpeg;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOJPEG_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/JPEG

//Value Computed by CMake
ITKIOLSM_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/LSM

//Dependencies for the target
ITKIOLSM_LIB_DEPENDS:STATIC=general;ITKIOTIFF;

//Value Computed by CMake
ITKIOLSM_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/LSM

//Value Computed by CMake
ITKIOMRC_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/MRC

//Dependencies for the target
ITKIOMRC_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOMRC_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/MRC

//Value Computed by CMake
ITKIOMesh_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/Mesh

//Dependencies for the target
ITKIOMesh_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKgiftiio;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOMesh_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/Mesh

//Value Computed by CMake
ITKIOMeta_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/Meta

//Dependencies for the target
ITKIOMeta_LIB_DEPENDS:STATIC=general;ITKMetaIO;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOMeta_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/Meta

//Value Computed by CMake
ITKIONIFTI_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/NIFTI

//Dependencies for the target
ITKIONIFTI_LIB_DEPENDS:STATIC=general;ITKznz;general;ITKniftiio;general;ITKIOImageBase;

//Value Computed by CMake
ITKIONIFTI_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/NIFTI

//Value Computed by CMake
ITKIONRRD_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/NRRD

//Dependencies for the target
ITKIONRRD_LIB_DEPENDS:STATIC=general;ITKNrrdIO;general;ITKIOImageBase;

//Value Computed by CMake
ITKIONRRD_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/NRRD

//Value Computed by CMake
ITKIOPNG_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/PNG

//Dependencies for the target
ITKIOPNG_LIB_DEPENDS:STATIC=general;itkpng;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOPNG_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/PNG

//Value Computed by CMake
ITKIORAW_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/RAW

//Value Computed by CMake
ITKIORAW_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/RAW

//Value Computed by CMake
ITKIOSiemens_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/Siemens

//Dependencies for the target
ITKIOSiemens_LIB_DEPENDS:STATIC=general;ITKIOIPL;general;ITKIOGE;

//Value Computed by CMake
ITKIOSiemens_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/Siemens

//Value Computed by CMake
ITKIOSpatialObjects_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/SpatialObjects

//Dependencies for the target
ITKIOSpatialObjects_LIB_DEPENDS:STATIC=general;ITKSpatialObjects;general;ITKIOXML;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOSpatialObjects_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/SpatialObjects

//Value Computed by CMake
ITKIOStimulate_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/Stimulate

//Dependencies for the target
ITKIOStimulate_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOStimulate_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/Stimulate

//Value Computed by CMake
ITKIOTIFF_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/TIFF

//Dependencies for the target
ITKIOTIFF_LIB_DEPENDS:STATIC=general;itktiff;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOTIFF_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/TIFF

//Value Computed by CMake
ITKIOTransformBase_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/TransformBase

//Dependencies for the target
ITKIOTransformBase_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKIOTransformBase_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/TransformBase

//Value Computed by CMake
ITKIOTransformHDF5_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/TransformHDF5

//Dependencies for the target
ITKIOTransformHDF5_LIB_DEPENDS:STATIC=general;ITKIOTransformBase;general;itkhdf5_cpp;general;itkhdf5;

//Value Computed by CMake
ITKIOTransformHDF5_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/TransformHDF5

//Value Computed by CMake
ITKIOTransformInsightLegacy_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/TransformInsightLegacy

//Dependencies for the target
ITKIOTransformInsightLegacy_LIB_DEPENDS:STATIC=general;ITKIOTransformBase;general;itkdouble-conversion;

//Value Computed by CMake
ITKIOTransformInsightLegacy_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/TransformInsightLegacy

//Value Computed by CMake
ITKIOTransformMatlab_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/TransformMatlab

//Dependencies for the target
ITKIOTransformMatlab_LIB_DEPENDS:STATIC=general;ITKIOTransformBase;

//Value Computed by CMake
ITKIOTransformMatlab_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/TransformMatlab

//Value Computed by CMake
ITKIOVTK_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/VTK

//Dependencies for the target
ITKIOVTK_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOVTK_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/VTK

//Value Computed by CMake
ITKIOXML_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/XML

//Dependencies for the target
ITKIOXML_LIB_DEPENDS:STATIC=general;ITKEXPAT;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOXML_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/XML

//Value Computed by CMake
ITKImageAdaptors_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/ImageAdaptors

//Value Computed by CMake
ITKImageAdaptors_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/ImageAdaptors

//Value Computed by CMake
ITKImageCompare_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageCompare

//Value Computed by CMake
ITKImageCompare_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageCompare

//Value Computed by CMake
ITKImageCompose_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageCompose

//Value Computed by CMake
ITKImageCompose_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageCompose

//Value Computed by CMake
ITKImageFeature_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageFeature

//Value Computed by CMake
ITKImageFeature_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageFeature

//Value Computed by CMake
ITKImageFilterBase_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageFilterBase

//Value Computed by CMake
ITKImageFilterBase_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageFilterBase

//Value Computed by CMake
ITKImageFunction_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/ImageFunction

//Value Computed by CMake
ITKImageFunction_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/ImageFunction

//Value Computed by CMake
ITKImageFusion_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageFusion

//Value Computed by CMake
ITKImageFusion_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageFusion

//Value Computed by CMake
ITKImageGradient_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageGradient

//Value Computed by CMake
ITKImageGradient_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageGradient

//Value Computed by CMake
ITKImageGrid_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageGrid

//Value Computed by CMake
ITKImageGrid_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageGrid

//Value Computed by CMake
ITKImageIntensity_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageIntensity

//Value Computed by CMake
ITKImageIntensity_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageIntensity

//Value Computed by CMake
ITKImageLabel_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageLabel

//Value Computed by CMake
ITKImageLabel_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageLabel

//Value Computed by CMake
ITKImageNoise_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageNoise

//Value Computed by CMake
ITKImageNoise_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageNoise

//Value Computed by CMake
ITKImageSources_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageSources

//Value Computed by CMake
ITKImageSources_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageSources

//Value Computed by CMake
ITKImageStatistics_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageStatistics

//Value Computed by CMake
ITKImageStatistics_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageStatistics

//Value Computed by CMake
ITKIntegratedTest_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Nonunit/IntegratedTest

//Value Computed by CMake
ITKIntegratedTest_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Nonunit/IntegratedTest

//Value Computed by CMake
ITKJPEG_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/JPEG

//Value Computed by CMake
ITKJPEG_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/JPEG

//Value Computed by CMake
ITKKLMRegionGrowing_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/KLMRegionGrowing

//Dependencies for the target
ITKKLMRegionGrowing_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKKLMRegionGrowing_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/KLMRegionGrowing

//Value Computed by CMake
ITKKWSys_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/KWSys

//Value Computed by CMake
ITKKWSys_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/KWSys

//Value Computed by CMake
ITKLabelMap_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/LabelMap

//Dependencies for the target
ITKLabelMap_LIB_DEPENDS:STATIC=general;ITKStatistics;

//Value Computed by CMake
ITKLabelMap_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/LabelMap

//Value Computed by CMake
ITKLabelVoting_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/LabelVoting

//Value Computed by CMake
ITKLabelVoting_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/LabelVoting

//Value Computed by CMake
ITKLevelSets_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/LevelSets

//Value Computed by CMake
ITKLevelSets_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/LevelSets

//Value Computed by CMake
ITKLevelSetsv4_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/LevelSetsv4

//Value Computed by CMake
ITKLevelSetsv4_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/LevelSetsv4

//Value Computed by CMake
ITKMarkovRandomFieldsClassifiers_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/MarkovRandomFieldsClassifiers

//Value Computed by CMake
ITKMarkovRandomFieldsClassifiers_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/MarkovRandomFieldsClassifiers

//Value Computed by CMake
ITKMathematicalMorphology_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/MathematicalMorphology

//Value Computed by CMake
ITKMathematicalMorphology_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/MathematicalMorphology

//Value Computed by CMake
ITKMesh_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/Mesh

//Dependencies for the target
ITKMesh_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKMesh_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/Mesh

//Value Computed by CMake
ITKMetaIO_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/MetaIO

//Dependencies for the target
ITKMetaIO_LIB_DEPENDS:STATIC=general;itkzlib;

//Value Computed by CMake
ITKMetaIO_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/MetaIO

//Value Computed by CMake
ITKMetricsv4_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/Metricsv4

//Value Computed by CMake
ITKMetricsv4_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/Metricsv4

//Value Computed by CMake
ITKNIFTI_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/NIFTI

//Value Computed by CMake
ITKNIFTI_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/NIFTI

//Value Computed by CMake
ITKNarrowBand_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/NarrowBand

//Value Computed by CMake
ITKNarrowBand_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/NarrowBand

//Value Computed by CMake
ITKNetlib_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/Netlib

//Value Computed by CMake
ITKNetlib_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/Netlib

//Value Computed by CMake
ITKNeuralNetworks_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/NeuralNetworks

//Value Computed by CMake
ITKNeuralNetworks_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/NeuralNetworks

//Value Computed by CMake
ITKNrrdIO_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/NrrdIO

//Dependencies for the target
ITKNrrdIO_LIB_DEPENDS:STATIC=general;itkzlib;

//Value Computed by CMake
ITKNrrdIO_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/NrrdIO

//Value Computed by CMake
ITKOptimizers_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/Optimizers

//Dependencies for the target
ITKOptimizers_LIB_DEPENDS:STATIC=general;ITKStatistics;

//Value Computed by CMake
ITKOptimizers_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/Optimizers

//Value Computed by CMake
ITKOptimizersv4_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/Optimizersv4

//Dependencies for the target
ITKOptimizersv4_LIB_DEPENDS:STATIC=general;ITKOptimizers;

//Value Computed by CMake
ITKOptimizersv4_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/Optimizersv4

//Value Computed by CMake
ITKPDEDeformableRegistration_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/PDEDeformable

//Value Computed by CMake
ITKPDEDeformableRegistration_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/PDEDeformable

//Value Computed by CMake
ITKPNG_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/PNG

//Value Computed by CMake
ITKPNG_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/PNG

//Value Computed by CMake
ITKPath_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/Path

//Dependencies for the target
ITKPath_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKPath_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/Path

//Value Computed by CMake
ITKPolynomials_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/Polynomials

//Dependencies for the target
ITKPolynomials_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKPolynomials_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/Polynomials

//Value Computed by CMake
ITKQuadEdgeMeshFiltering_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/QuadEdgeMeshFiltering

//Value Computed by CMake
ITKQuadEdgeMeshFiltering_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/QuadEdgeMeshFiltering

//Value Computed by CMake
ITKQuadEdgeMesh_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/QuadEdgeMesh

//Dependencies for the target
ITKQuadEdgeMesh_LIB_DEPENDS:STATIC=general;ITKMesh;

//Value Computed by CMake
ITKQuadEdgeMesh_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/QuadEdgeMesh

//Value Computed by CMake
ITKRegionGrowing_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/RegionGrowing

//Value Computed by CMake
ITKRegionGrowing_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/RegionGrowing

//Value Computed by CMake
ITKRegistrationCommon_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/Common

//Value Computed by CMake
ITKRegistrationCommon_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/Common

//Value Computed by CMake
ITKRegistrationMethodsv4_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/RegistrationMethodsv4

//Value Computed by CMake
ITKRegistrationMethodsv4_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/RegistrationMethodsv4

//Value Computed by CMake
ITKSignedDistanceFunction_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/SignedDistanceFunction

//Value Computed by CMake
ITKSignedDistanceFunction_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/SignedDistanceFunction

//Value Computed by CMake
ITKSmoothing_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/Smoothing

//Value Computed by CMake
ITKSmoothing_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/Smoothing

//Value Computed by CMake
ITKSpatialFunction_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/SpatialFunction

//Value Computed by CMake
ITKSpatialFunction_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/SpatialFunction

//Value Computed by CMake
ITKSpatialObjects_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/SpatialObjects

//Dependencies for the target
ITKSpatialObjects_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;general;ITKMesh;general;ITKIOImageBase;

//Value Computed by CMake
ITKSpatialObjects_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/SpatialObjects

//Value Computed by CMake
ITKStatistics_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/Statistics

//Dependencies for the target
ITKStatistics_LIB_DEPENDS:STATIC=general;ITKCommon;general;itkNetlibSlatec;

//Value Computed by CMake
ITKStatistics_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/Statistics

//Value Computed by CMake
ITKTIFF_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/TIFF

//Value Computed by CMake
ITKTIFF_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/TIFF

//Value Computed by CMake
ITKTestKernel_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/TestKernel

//Value Computed by CMake
ITKTestKernel_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/TestKernel

//Value Computed by CMake
ITKThresholding_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/Thresholding

//Value Computed by CMake
ITKThresholding_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/Thresholding

//Value Computed by CMake
ITKTransform_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/Transform

//Value Computed by CMake
ITKTransform_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/Transform

//Enable compatibility with ITK3.x when possible.
ITKV3_COMPATIBILITY:BOOL=OFF

//Value Computed by CMake
ITKVNLInstantiation_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNLInstantiation

//Dependencies for the target
ITKVNLInstantiation_LIB_DEPENDS:STATIC=general;itkvnl_algo;general;itkvnl;general;itkv3p_netlib;

//Value Computed by CMake
ITKVNLInstantiation_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNLInstantiation

//Value Computed by CMake
ITKVNL_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL

//Value Computed by CMake
ITKVNL_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL

//Value Computed by CMake
ITKVTK_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Bridge/VTK

//Dependencies for the target
ITKVTK_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKVTK_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Bridge/VTK

//Value Computed by CMake
ITKVideoCore_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Video/Core

//Dependencies for the target
ITKVideoCore_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKVideoCore_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Video/Core

//Value Computed by CMake
ITKVideoFiltering_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Video/Filtering

//Value Computed by CMake
ITKVideoFiltering_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Video/Filtering

//Value Computed by CMake
ITKVideoIO_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Video/IO

//Dependencies for the target
ITKVideoIO_LIB_DEPENDS:STATIC=general;ITKVideoCore;general;ITKIOImageBase;

//Value Computed by CMake
ITKVideoIO_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Video/IO

//Value Computed by CMake
ITKVoronoi_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/Voronoi

//Value Computed by CMake
ITKVoronoi_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/Voronoi

//Value Computed by CMake
ITKVtkGlue_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Bridge/VtkGlue

//Dependencies for the target
ITKVtkGlue_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKVTK;general;vtkRenderingOpenGL;general;vtkImagingHybrid;general;vtkIOImage;general;vtkCommonDataModel;general;vtkCommonMath;general;vtkCommonCore;general;vtksys;general;vtkCommonMisc;general;vtkCommonSystem;general;vtkCommonTransforms;general;vtkCommonExecutionModel;general;vtkDICOMParser;general;vtkIOCore;general;/usr/lib/libz.dylib;general;vtkmetaio;general;vtkjpeg;general;vtkpng;general;vtktiff;general;vtkImagingCore;general;vtkRenderingCore;general;vtkCommonColor;general;vtkFiltersExtraction;general;vtkFiltersCore;general;vtkFiltersGeneral;general;vtkCommonComputationalGeometry;general;vtkFiltersStatistics;general;vtkImagingFourier;general;vtkalglib;general;vtkFiltersGeometry;general;vtkFiltersSources;general;vtkRenderingFreeType;general;vtkfreetype;general;vtkftgl;general;vtkInteractionStyle;general;vtkImagingSources;

//Value Computed by CMake
ITKVtkGlue_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Bridge/VtkGlue

//Value Computed by CMake
ITKWatersheds_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/Watersheds

//Dependencies for the target
ITKWatersheds_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKWatersheds_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/Watersheds

//Value Computed by CMake
ITKZLIB_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/ZLIB

//Value Computed by CMake
ITKZLIB_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/ZLIB

//Value Computed by CMake
ITK_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild

//Build the tests of module dependencies.
ITK_BUILD_ALL_MODULES_FOR_TESTS:BOOL=OFF

//Build the default ITK modules.
ITK_BUILD_DEFAULT_MODULES:BOOL=ON

//Provide here the size of your RAM Memory in GigaBytes
ITK_COMPUTER_MEMORY_SIZE:STRING=1

//Run cppcheck for static code analysis
ITK_CPPCHECK_TEST:BOOL=OFF

//Doxygen will generate Microsoft HTML help
ITK_DOXYGEN_CHM:BOOL=OFF

//Doxygen will generate additional index files for Xcode 3
ITK_DOXYGEN_DOCSET:BOOL=OFF

//Doxygen will generate Eclipse help plugin
ITK_DOXYGEN_ECLIPSEHELP:BOOL=OFF

//Doxygen will generate HTML Output
ITK_DOXYGEN_HTML:BOOL=ON

//Doxygen will generate LaTeX output
ITK_DOXYGEN_LATEX:BOOL=OFF

//Doxygen will generate Qt Compressed Help
ITK_DOXYGEN_QHP:BOOL=OFF

//Doxygen will generate RTF output optimized for Word 97
ITK_DOXYGEN_RTF:BOOL=OFF

//Doxygen will generate XML output
ITK_DOXYGEN_XML:BOOL=OFF

//Support run-time loading of shared libraries
ITK_DYNAMIC_LOADING:BOOL=ON

//Do not download source code or data from the network
ITK_FORBID_DOWNLOADS:BOOL=OFF

//Remove all legacy code completely.
ITK_LEGACY_REMOVE:BOOL=OFF

//Silence all legacy code messages.
ITK_LEGACY_SILENT:BOOL=OFF

//Value Computed by CMake
ITK_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1

//When ON, ITK will use 64 bits integers to index pixels. This
// is needed for managing images larger than 4Gb in some platforms.
ITK_USE_64BITS_IDS:BOOL=ON

//Download and use BrainWeb data for advanced testing
ITK_USE_BRAINWEB_DATA:BOOL=OFF

//Turn on concept checking to give helpful errors at compile time
// if a type cannot be used as a template parameter.
ITK_USE_CONCEPT_CHECKING:BOOL=ON

//Use double precision fftw if found
ITK_USE_FFTWD:BOOL=OFF

//Use single precision fftw if found
ITK_USE_FFTWF:BOOL=OFF

//Use single precision for origin/spacing/directions in itk::Image
ITK_USE_FLOAT_SPACE_PRECISION:BOOL=OFF

//GPU acceleration via OpenCL
ITK_USE_GPU:BOOL=OFF

//Enable the use of KWStyle for checking coding style.
ITK_USE_KWSTYLE:BOOL=OFF

//Turn on Strict concept checking to give more stringent errors
// at compile time if a type cannot be used as a template parameter.
ITK_USE_STRICT_CONCEPT_CHECKING:BOOL=OFF

//Use an outside build of double-conversion
ITK_USE_SYSTEM_DOUBLECONVERSION:BOOL=OFF

//Use system-installed expat
ITK_USE_SYSTEM_EXPAT:BOOL=OFF

//Use an installed version of fftw
ITK_USE_SYSTEM_FFTW:BOOL=OFF

//Use an outside build of GDCM.
ITK_USE_SYSTEM_GDCM:BOOL=OFF

//Use an outside build of HDF5.
ITK_USE_SYSTEM_HDF5:BOOL=OFF

//Use an outside build of JPEG.
ITK_USE_SYSTEM_JPEG:BOOL=OFF

//Use the system's libraries by default.
//\nIf this is not set during the initial configuration, it will
// have no effect.
ITK_USE_SYSTEM_LIBRARIES:BOOL=OFF

//Use system-installed png
ITK_USE_SYSTEM_PNG:BOOL=OFF

//Use system SZIP. If OFF, SZIP is built as an external project.
ITK_USE_SYSTEM_SZIP:BOOL=OFF

//Use system-installed tiff
ITK_USE_SYSTEM_TIFF:BOOL=OFF

//Use an outside build of VXL.
ITK_USE_SYSTEM_VXL:BOOL=OFF

//Use system ZLIB. If OFF, ZLIB is built as an external project.
ITK_USE_SYSTEM_ZLIB:BOOL=OFF

//Build Java support (Currently not supported)
ITK_WRAP_JAVA:BOOL=OFF

//Build Perl support (Currently not supported)
ITK_WRAP_PERL:BOOL=OFF

//Build Python support
ITK_WRAP_PYTHON:BOOL=OFF

//Build Ruby support (Currently not supported)
ITK_WRAP_RUBY:BOOL=OFF

//Build Tcl support (Currently not supported)
ITK_WRAP_TCL:BOOL=OFF

//Dependencies for the target
ITKgiftiio_LIB_DEPENDS:STATIC=general;ITKEXPAT;general;ITKznz;general;ITKniftiio;

//Dependencies for the target
ITKniftiio_LIB_DEPENDS:STATIC=general;ITKznz;general;-lm;

//Value Computed by CMake
ITKv4ImageRegistration_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/RegistrationITKv4

//Value Computed by CMake
ITKv4ImageRegistration_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/RegistrationITKv4

//Dependencies for the target
ITKznz_LIB_DEPENDS:STATIC=general;itkzlib;

//Value Computed by CMake
ImageExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/DataRepresentation/Image

//Value Computed by CMake
ImageExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/DataRepresentation/Image

//Value Computed by CMake
ImageSegmentation_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/Segmentation

//Value Computed by CMake
ImageSegmentation_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/Segmentation

//Value Computed by CMake
IteratorExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/Iterators

//Value Computed by CMake
IteratorExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/Iterators

//Path to the KWStyle executable
KWSTYLE_EXECUTABLE:FILEPATH=KWSTYLE_EXECUTABLE-NOTFOUND

//The number of headers in a HeaderTest code.
MAXIMUM_NUMBER_OF_HEADERS:STRING=35

//Value Computed by CMake
MeshExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/DataRepresentation/Mesh

//Value Computed by CMake
MeshExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/DataRepresentation/Mesh

//AnalyzeObjectMapIO plugin for ITK. From Insight Journal article
// with handle: http://hdl.handle.net/1926/593
Module_AnalyzeObjectMapIO:BOOL=OFF

//This module contains wrapper code to convert ITK Image's to
//\n  NumPy array's and back.  For example:
//\n
//\n    import itk
//\n    ImageType = itk.Image[itk.F, 2]
//\n    image = ImageType.New()
//\n    array = itk.PyBuffer[ImageType].GetArrayFromImage(image)
//\n    image = itk.PyBuffer[ImageType].GetImageFromArray(array)
//\n
//\n  See http://insight-journal.org/browse/publication/85
//\n      http://hdl.handle.net/1926/188
Module_BridgeNumPy:BOOL=OFF

//This module contains a filter to compute higher order
//\n  accurate numerical derivatives and gradients from an input
// scalar image.
//\n  field from a displacement field image.
//\n  Higher Order Accurate Derivative and Gradient Calculation
// in ITK
//\n  http://www.insight-journal.org/browse/publication/775
//\n  http://hdl.handle.net/10380/3231
Module_HigherOrderAccurateGradient:BOOL=OFF

//FDFImageIO plugin for ITK. Authors Gleen Pierce/Nick Tustison/Kent
// Williams
Module_IOFDF:BOOL=OFF

//This module contains classes for reading and writing QuadEdgeMeshes
// using
//\n  the STL (STereoLithography)file format. http://hdl.handle.net/10380/3452
Module_IOSTL:BOOL=OFF

//The modules contains classes for reading spatial transform from
// DICOM
//\n  files. See http://www.insight-journal.org/browse/publication/923
//\n             http://hdl.handle.net/10380/3468
Module_IOTransformDCMTK:BOOL=OFF

//Request building ITKDCMTK
Module_ITKDCMTK:BOOL=OFF

//Request building ITKDeprecated
Module_ITKDeprecated:BOOL=OFF

//Request building ITKIODCMTK
Module_ITKIODCMTK:BOOL=OFF

//Request building ITKIOMINC
Module_ITKIOMINC:BOOL=OFF

//Request building ITKIOPhilipsREC
Module_ITKIOPhilipsREC:BOOL=OFF

//Request building ITKLevelSetsv4Visualization
Module_ITKLevelSetsv4Visualization:BOOL=OFF

//Request building ITKMINC
Module_ITKMINC:BOOL=OFF

//Request building ITKOpenJPEG
Module_ITKOpenJPEG:BOOL=OFF

//Request building ITKReview
Module_ITKReview:BOOL=OFF

//Request building ITKV3Compatibility
Module_ITKV3Compatibility:BOOL=OFF

//Request building ITKVideoBridgeOpenCV
Module_ITKVideoBridgeOpenCV:BOOL=OFF

//Request building ITKVideoBridgeVXL
Module_ITKVideoBridgeVXL:BOOL=OFF

//Request building ITKVtkGlue
Module_ITKVtkGlue:BOOL=ON

//Classes performing morphology efficiently on label images.
//\n  Label collisions are consistently handled, and
//\n  operations are efficient (approximately constant time wrt
//\n  structuring element size). Only circular/spherical/hyperspherical
//\n  structuring elements are supported.
//\n  http://www.insight-journal.org/browse/publication/228
//\n  http://hdl.handle.net/10380/3399
Module_LabelErodeDilate:BOOL=OFF

//Framework for determining the sizes of lesions in medical images.
Module_LesionSizingToolkit:BOOL=OFF

//MGHIO ImageIO plugin for ITK
Module_MGHIO:BOOL=OFF

//http://www.insight-journal.org/browse/publication/213
//\n
Module_MinimalPathExtraction:BOOL=OFF

//Classes performing morphology using parabolic functions.
//\n  Fast distance transforms and binary erosions/dilations/openings/closings
//\n  by spheres, sharpenings and grayscale operations.
//\n  http://www.insight-journal.org/browse/publication/228
//\n  http://hdl.handle.net/1926/1370
Module_ParabolicMorphology:BOOL=OFF

//SCIFIO (Bioformats) ImageIO plugin for ITK
Module_SCIFIO:BOOL=OFF

//A class to perform automatic skull-stripping for neuroimage analysis.
Module_SkullStrip:BOOL=OFF

//GPU and CPU Young & Van Vliet Recursive Gaussian Smoothing Filter:
// http://hdl.handle.net/10380/3425
Module_SmoothingRecursiveYvvGaussianFilter:BOOL=OFF

//This module builds the examples found at http://itk.org/ITKExamples/
Module_SphinxExamples:BOOL=OFF

//This module contains filter called
//\nitk::SplitComponentsImageFilter.  This filter generates component
// images from an
//\nitk::Image of, for example, itk::Vector, itk::CovariantVector,
// or
//\nitk::SymmetricSecondRankTensor. http://hdl.handle.net/10380/3230
Module_SplitComponents:BOOL=OFF

//Triangle and edge based QuadEdgeMesh subdivision filters.
//\n
//\nSee the following Insight Journal's publication:
//\n
//\n  Wanlin Zhu, "Triangle Mesh Subdivision"
//\n  http://www.insight-journal.org/browse/publication/831
//\n  http://hdl.handle.net/10380/3307
Module_SubdivisionQuadEdgeMeshFilter:BOOL=OFF

//A module to perform variational image registration. http://hdl.handle.net/10380/3460
Module_VariationalRegistration:BOOL=OFF

//A collection of examples that illustrate how to use ITK.
Module_WikiExamples:BOOL=OFF

//Value Computed by CMake
NIFTI_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/NIFTI/src/nifti

//Value Computed by CMake
NIFTI_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/NIFTI/src/nifti

//Value Computed by CMake
NumericsExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/Numerics

//Value Computed by CMake
NumericsExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/Numerics

//Path to a program.
PERL_EXECUTABLE:FILEPATH=/usr/bin/perl

//Path to a program.
PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python

//Value Computed by CMake
PathExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/DataRepresentation/Path

//Value Computed by CMake
PathExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/DataRepresentation/Path

//Value Computed by CMake
SpatialObjectsExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/SpatialObjects

//Value Computed by CMake
SpatialObjectsExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/SpatialObjects

//Value Computed by CMake
StatisticsExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/Statistics

//Value Computed by CMake
StatisticsExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/Statistics

//Use HIDDEN visibility support if available.
USE_COMPILER_HIDDEN_VISIBILITY:BOOL=ON

//Enable C++0x standard extensions
VCL_INCLUDE_CXX_0X:BOOL=OFF

//Whether vnl_vector/vnl_matrix accessor methods check index bounds.
VNL_CONFIG_CHECK_BOUNDS:BOOL=ON

//Enable Streaming SIMD Extensions 2 optimisations (hardware dependant).
// Currently broken. For use by VNL developers only.
VNL_CONFIG_ENABLE_SSE2:BOOL=OFF

//Enable Streaming SIMD Extensions 2 implementation of rounding
// (hardware dependant).
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//Whether backward-compatibility methods are provided by vnl.
VNL_CONFIG_LEGACY_METHODS:BOOL=OFF

//Whether thread-safe vnl implementations are used.
VNL_CONFIG_THREAD_SAFE:BOOL=ON

//v3p include files
VTHREEP_INCLUDE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/v3p

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VTHREEP_INSTALL_INCLUDE_DIR:STATIC=/usr/local/include/vxl/v3p

//The directory containing a CMake configuration file for VTK.
VTK_DIR:PATH=/Users/simpsonl/Software/VTKBuild

//Re-run the configuration tests?
VXL_UPDATE_CONFIGURATION:BOOL=OFF

//Path to a file.
X11_ICE_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_ICE_LIB:FILEPATH=/opt/X11/lib/libICE.dylib

//Path to a file.
X11_SM_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_SM_LIB:FILEPATH=/opt/X11/lib/libSM.dylib

//Path to a file.
X11_X11_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_X11_LIB:FILEPATH=/opt/X11/lib/libX11.dylib

//Path to a file.
X11_XRes_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_XRes_LIB:FILEPATH=/opt/X11/lib/libXRes.dylib

//Path to a file.
X11_XShm_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a file.
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//Path to a file.
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//Path to a library.
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//Path to a file.
X11_Xaccessrules_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a file.
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//Path to a file.
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//Path to a library.
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//Path to a file.
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//Path to a library.
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//Path to a file.
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//Path to a library.
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//Path to a file.
X11_Xdamage_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xdamage_LIB:FILEPATH=/opt/X11/lib/libXdamage.dylib

//Path to a file.
X11_Xdmcp_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xdmcp_LIB:FILEPATH=/opt/X11/lib/libXdmcp.dylib

//Path to a library.
X11_Xext_LIB:FILEPATH=/opt/X11/lib/libXext.dylib

//Path to a file.
X11_Xfixes_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xfixes_LIB:FILEPATH=/opt/X11/lib/libXfixes.dylib

//Path to a file.
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//Path to a library.
X11_Xft_LIB:FILEPATH=/opt/X11/lib/libXft.dylib

//Path to a file.
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//Path to a library.
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//Path to a file.
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//Path to a library.
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//Path to a file.
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//Path to a library.
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//Path to a file.
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//Path to a file.
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//Path to a library.
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//Path to a file.
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//Path to a file.
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//Path to a file.
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//Path to a library.
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//Path to a file.
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//Path to a library.
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//Path to a file.
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//Path to a library.
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//Path to a file.
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//Path to a library.
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//Path to a file.
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//Path to a library.
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//Path to a file.
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//Path to a file.
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//Path to a library.
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//Path to a file.
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//Path to a file.
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//Path to a library.
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//Path to a library.
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//Path to a library.
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//Path to a file.
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//Path to a file.
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//Path to a file.
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//Dependencies for the target
gdcmCommon_LIB_DEPENDS:STATIC=general;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/System/Library/Frameworks/CoreFoundation.framework;

//Dependencies for the target
gdcmDICT_LIB_DEPENDS:STATIC=general;gdcmDSED;general;gdcmIOD;

//Dependencies for the target
gdcmDSED_LIB_DEPENDS:STATIC=general;gdcmCommon;general;itkzlib;

//Dependencies for the target
gdcmIOD_LIB_DEPENDS:STATIC=general;gdcmDSED;general;gdcmCommon;general;ITKEXPAT;

//Dependencies for the target
gdcmMEXD_LIB_DEPENDS:STATIC=general;gdcmMSFF;general;gdcmDICT;general;gdcmDSED;general;gdcmIOD;general;gdcmsocketxx;

//Dependencies for the target
gdcmMSFF_LIB_DEPENDS:STATIC=general;gdcmIOD;general;gdcmDSED;general;gdcmDICT;general;gdcmjpeg8;general;gdcmjpeg12;general;gdcmjpeg16;general;gdcmopenjpeg;general;gdcmcharls;general;gdcmuuid;

//Dependencies for target
gdcmcharls_LIB_DEPENDS:STATIC=

//Dependencies for target
gdcmjpeg12_LIB_DEPENDS:STATIC=

//Dependencies for target
gdcmjpeg16_LIB_DEPENDS:STATIC=

//Dependencies for target
gdcmjpeg8_LIB_DEPENDS:STATIC=

//Dependencies for the target
gdcmopenjpeg_LIB_DEPENDS:STATIC=general;m;

//Dependencies for target
gdcmsocketxx_LIB_DEPENDS:STATIC=

//Dependencies for target
gdcmuuid_LIB_DEPENDS:STATIC=

//Value Computed by CMake
gifticlib_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/GIFTI/src/gifticlib

//Value Computed by CMake
gifticlib_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/GIFTI/src/gifticlib

//Dependencies for the target
itkNetlibSlatec_LIB_DEPENDS:STATIC=general;itkv3p_netlib;

//Value Computed by CMake
itkdicomparser_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/DICOMParser/src/DICOMParser

//Value Computed by CMake
itkdicomparser_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/DICOMParser/src/DICOMParser

//Dependencies for target
itkdouble-conversion_LIB_DEPENDS:STATIC=

//Dependencies for the target
itkhdf5_LIB_DEPENDS:STATIC=general;m;general;itkzlib;

//Dependencies for the target
itkhdf5_cpp_LIB_DEPENDS:STATIC=general;itkhdf5;

//Dependencies for target
itkjpeg_LIB_DEPENDS:STATIC=

//Dependencies for the target
itkpng_LIB_DEPENDS:STATIC=general;itkzlib;

//Value Computed by CMake
itksys_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/KWSys/src/KWSys

//Dependencies for target
itksys_LIB_DEPENDS:STATIC=

//Value Computed by CMake
itksys_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/KWSys/src/KWSys

//Dependencies for the target
itktestlib_LIB_DEPENDS:STATIC=general;itkvcl;

//Dependencies for the target
itktiff_LIB_DEPENDS:STATIC=general;itkzlib;general;itkjpeg;general;-lm;

//Dependencies for the target
itkv3p_lsqr_LIB_DEPENDS:STATIC=general;m;

//Dependencies for the target
itkv3p_netlib_LIB_DEPENDS:STATIC=general;m;

//Dependencies for the target
itkvcl_LIB_DEPENDS:STATIC=general;m;

//Dependencies for the target
itkvnl_LIB_DEPENDS:STATIC=general;itkvcl;

//Dependencies for the target
itkvnl_algo_LIB_DEPENDS:STATIC=general;itkv3p_netlib;general;itkvnl;general;itkv3p_lsqr;

//Dependencies for target
itkzlib_LIB_DEPENDS:STATIC=

//Value Computed by CMake
lsqr_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL/src/vxl/v3p/netlib/linalg

//Value Computed by CMake
lsqr_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/v3p/netlib/linalg

//Value Computed by CMake
netlib_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL/src/vxl/v3p/netlib

//Value Computed by CMake
netlib_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/v3p/netlib

//Value Computed by CMake
vcl_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL/src/vxl/vcl

//Value Computed by CMake
vcl_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/vcl

//Value Computed by CMake
vnl_algo_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL/src/vxl/core/vnl/algo

//Value Computed by CMake
vnl_algo_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/core/vnl/algo

//Value Computed by CMake
vthreep_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL/src/vxl/v3p

//Value Computed by CMake
vthreep_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/v3p

//Value Computed by CMake
vxl_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL/src/vxl

//Value Computed by CMake
vxl_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl

//Value Computed by CMake
vxl_config_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL/src/vxl/config/cmake/config

//Value Computed by CMake
vxl_config_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/config/cmake/config

//Value Computed by CMake
vxlcore_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL/src/vxl/core

//Value Computed by CMake
vxlcore_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/core


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COMPILER_HAS_HIDDEN_INLINE_VISIBILITY:INTERNAL=1
//Test COMPILER_HAS_HIDDEN_VISIBILITY
COMPILER_HAS_HIDDEN_VISIBILITY:INTERNAL=1
//Result of TRY_COMPILE
COMPILE_RESULT:INTERNAL=TRUE
//ADVANCED property for variable: CPACK_BINARY_BUNDLE
CPACK_BINARY_BUNDLE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_BINARY_DEB
CPACK_BINARY_DEB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_BINARY_DRAGNDROP
CPACK_BINARY_DRAGNDROP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_BINARY_IFW
CPACK_BINARY_IFW-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_BINARY_NSIS
CPACK_BINARY_NSIS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_BINARY_OSXX11
CPACK_BINARY_OSXX11-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_BINARY_PACKAGEMAKER
CPACK_BINARY_PACKAGEMAKER-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_BINARY_RPM
CPACK_BINARY_RPM-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_BINARY_STGZ
CPACK_BINARY_STGZ-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_BINARY_TBZ2
CPACK_BINARY_TBZ2-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_BINARY_TGZ
CPACK_BINARY_TGZ-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_BINARY_TXZ
CPACK_BINARY_TXZ-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_SOURCE_TBZ2
CPACK_SOURCE_TBZ2-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_SOURCE_TGZ
CPACK_SOURCE_TGZ-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_SOURCE_TXZ
CPACK_SOURCE_TXZ-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_SOURCE_TZ
CPACK_SOURCE_TZ-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPACK_SOURCE_ZIP
CPACK_SOURCE_ZIP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPPCHECK_EXECUTABLE
CPPCHECK_EXECUTABLE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: CPPCHECK_ROOT_DIR
CPPCHECK_ROOT_DIR-ADVANCED:INTERNAL=1
//Test CXX_HAS_WARNING-Wall
CXX_HAS_WARNING-Wall:INTERNAL=1
//Test CXX_HAS_WARNING-Wcast-align
CXX_HAS_WARNING-Wcast-align:INTERNAL=1
//Test CXX_HAS_WARNING-Wdisabled-optimization
CXX_HAS_WARNING-Wdisabled-optimization:INTERNAL=1
//Test CXX_HAS_WARNING-Wextra
CXX_HAS_WARNING-Wextra:INTERNAL=1
//Test CXX_HAS_WARNING-Winvalid-pch
CXX_HAS_WARNING-Winvalid-pch:INTERNAL=1
//Test CXX_HAS_WARNING-Wno-deprecated
CXX_HAS_WARNING-Wno-deprecated:INTERNAL=1
//Test CXX_HAS_WARNING-Wno-format-nonliteral
CXX_HAS_WARNING-Wno-format-nonliteral:INTERNAL=1
//Test CXX_HAS_WARNING-Wno-invalid-offsetof
CXX_HAS_WARNING-Wno-invalid-offsetof:INTERNAL=1
//Test CXX_HAS_WARNING-Wno-long-double
CXX_HAS_WARNING-Wno-long-double:INTERNAL=
//Test CXX_HAS_WARNING-Wno-strict-overflow
CXX_HAS_WARNING-Wno-strict-overflow:INTERNAL=1
//Test CXX_HAS_WARNING-Woverloaded-virtual
CXX_HAS_WARNING-Woverloaded-virtual:INTERNAL=1
//Test CXX_HAS_WARNING-Wpointer-arith
CXX_HAS_WARNING-Wpointer-arith:INTERNAL=1
//Test CXX_HAS_WARNING-Wshadow
CXX_HAS_WARNING-Wshadow:INTERNAL=1
//Test CXX_HAS_WARNING-Wstrict-null-sentinel
CXX_HAS_WARNING-Wstrict-null-sentinel:INTERNAL=
//Test CXX_HAS_WARNING-Wunused
CXX_HAS_WARNING-Wunused:INTERNAL=1
//Test CXX_HAS_WARNING-Wwrite-strings
CXX_HAS_WARNING-Wwrite-strings:INTERNAL=1
//Test CXX_HAS_WARNING-funit-at-a-time
CXX_HAS_WARNING-funit-at-a-time:INTERNAL=1
//Result of TRY_COMPILE
CXX_HAVE_OFFSETOF:INTERNAL=TRUE
//Test C_HAS_WARNING-Wall
C_HAS_WARNING-Wall:INTERNAL=1
//Test C_HAS_WARNING-Wcast-align
C_HAS_WARNING-Wcast-align:INTERNAL=1
//Test C_HAS_WARNING-Wdisabled-optimization
C_HAS_WARNING-Wdisabled-optimization:INTERNAL=1
//Test C_HAS_WARNING-Wextra
C_HAS_WARNING-Wextra:INTERNAL=1
//Test C_HAS_WARNING-Winvalid-pch
C_HAS_WARNING-Winvalid-pch:INTERNAL=1
//Test C_HAS_WARNING-Wno-format-nonliteral
C_HAS_WARNING-Wno-format-nonliteral:INTERNAL=1
//Test C_HAS_WARNING-Wno-long-double
C_HAS_WARNING-Wno-long-double:INTERNAL=
//Test C_HAS_WARNING-Wno-strict-overflow
C_HAS_WARNING-Wno-strict-overflow:INTERNAL=1
//Test C_HAS_WARNING-Wno-uninitialized
C_HAS_WARNING-Wno-uninitialized:INTERNAL=1
//Test C_HAS_WARNING-Wno-unused-parameter
C_HAS_WARNING-Wno-unused-parameter:INTERNAL=1
//Test C_HAS_WARNING-Wpointer-arith
C_HAS_WARNING-Wpointer-arith:INTERNAL=1
//Test C_HAS_WARNING-Wshadow
C_HAS_WARNING-Wshadow:INTERNAL=1
//Test C_HAS_WARNING-Wunused
C_HAS_WARNING-Wunused:INTERNAL=1
//Test C_HAS_WARNING-Wwrite-strings
C_HAS_WARNING-Wwrite-strings:INTERNAL=1
//Test C_HAS_WARNING-funit-at-a-time
C_HAS_WARNING-funit-at-a-time:INTERNAL=1
//Result of TRY_COMPILE
DEV_T_IS_SCALAR:INTERNAL=TRUE
//Result of TRY_RUN
DOUBLE_CONVERSION_CORRECT_DOUBLE_OPERATIONS:INTERNAL=1
//Result of TRY_COMPILE
DOUBLE_CORRECT_NEEDED_COMPILED:INTERNAL=TRUE
//ADVANCED property for variable: EXECINFO_LIB
EXECINFO_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ExternalData_OBJECT_STORES
ExternalData_OBJECT_STORES-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ExternalData_URL_TEMPLATES
ExternalData_URL_TEMPLATES-ADVANCED:INTERNAL=1
//Details about finding EXPAT
FIND_PACKAGE_MESSAGE_DETAILS_EXPAT:INTERNAL=[ITKEXPAT][/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/Expat/src/expat;/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/Expat/src/expat][v()]
//Details about finding Perl
FIND_PACKAGE_MESSAGE_DETAILS_Perl:INTERNAL=[/usr/bin/perl][v5.16.2()]
//Details about finding PythonInterp
FIND_PACKAGE_MESSAGE_DETAILS_PythonInterp:INTERNAL=[/usr/bin/python][v2.7.5()]
//Details about finding Threads
FIND_PACKAGE_MESSAGE_DETAILS_Threads:INTERNAL=[TRUE][v()]
//Details about finding X11
FIND_PACKAGE_MESSAGE_DETAILS_X11:INTERNAL=[/opt/X11/lib/libX11.dylib][/opt/X11/include]
//Details about finding ZLIB
FIND_PACKAGE_MESSAGE_DETAILS_ZLIB:INTERNAL=[itkzlib][/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/ZLIB/src;/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/ZLIB/src][v()]
//Preserve compatibility with GDCM 2.0 release
GDCMV2_0_COMPATIBILITY:INTERNAL=ON
//When set to ON, gdcm::Trace macros will dumps message (override
// NDEBUG settings)
GDCM_ALWAYS_TRACE_MACRO:INTERNAL=OFF
GDCM_CMAKE_DIR:INTERNAL=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/GDCM/src/gdcm/CMake
//Test GDCM_CXX_HAS_FUNCTION
GDCM_CXX_HAS_FUNCTION:INTERNAL=1
GDCM_DEBUG_POSTFIX:INTERNAL=
//Have includes sys/time.h;byteswap.h
GDCM_HAVE_BYTESWAP_FILE_H:INTERNAL=
//Have function gettimeofday
GDCM_HAVE_GETTIMEOFDAY:INTERNAL=1
//Have include inttypes.h
GDCM_HAVE_INTTYPES_H:INTERNAL=1
//Have include langinfo.h
GDCM_HAVE_LANGINFO_H:INTERNAL=1
//Have symbol nl_langinfo
GDCM_HAVE_NL_LANGINFO:INTERNAL=1
//Have include pthread.h
GDCM_HAVE_PTHREAD_H:INTERNAL=1
//Have include rpc.h
GDCM_HAVE_RPC_H:INTERNAL=
//Have symbol snprintf
GDCM_HAVE_SNPRINTF:INTERNAL=1
//Have include stdint.h
GDCM_HAVE_STDINT_H:INTERNAL=1
//Have symbol strcasecmp
GDCM_HAVE_STRCASECMP:INTERNAL=1
//Have symbol strncasecmp
GDCM_HAVE_STRNCASECMP:INTERNAL=1
//Have function strptime
GDCM_HAVE_STRPTIME:INTERNAL=1
//Have include ;sys/time.h
GDCM_HAVE_SYS_TIME_H:INTERNAL=1
//Test GDCM_HAVE_WCHAR_IFSTREAM
GDCM_HAVE_WCHAR_IFSTREAM:INTERNAL=
//Have includes sys/time.h;winsock.h
GDCM_HAVE_WINSOCK_H:INTERNAL=
//Have function _snprintf
GDCM_HAVE__SNPRINTF:INTERNAL=
//Have function _stricmp
GDCM_HAVE__STRICMP:INTERNAL=
//Have function _strnicmp
GDCM_HAVE__STRNICMP:INTERNAL=
GDCM_INSTALL_PACKAGE_DIR:INTERNAL=lib/gdcm-2.5
//Remove all legacy code completely.
GDCM_LEGACY_REMOVE:INTERNAL=OFF
//Silence all legacy code messages.
GDCM_LEGACY_SILENT:INTERNAL=OFF
//Handle broken DICOM
GDCM_SUPPORT_BROKEN_IMPLEMENTATION:INTERNAL=ON
//Path to a valid temp directory
GDCM_TEMP_DIRECTORY:INTERNAL=/Users/simpsonl/Software/ITKBuild/Testing/Temporary
GDCM_USE_JPEGLS:INTERNAL=ON
//Use kakadu lib, only turn it on if you know what you are doing.
GDCM_USE_KAKADU:INTERNAL=OFF
//Use openjpeg v2 version (advanced users only).
GDCM_USE_OPENJPEG_V2:INTERNAL=ON
//Use pvrg lib, only turn it on if you know what you are doing.
GDCM_USE_PVRG:INTERNAL=OFF
//Use system charls
GDCM_USE_SYSTEM_CHARLS:INTERNAL=OFF
//Use system expat
GDCM_USE_SYSTEM_EXPAT:INTERNAL=ON
//Use system json
GDCM_USE_SYSTEM_JSON:INTERNAL=OFF
//Use LibXml2
GDCM_USE_SYSTEM_LIBXML2:INTERNAL=OFF
//Use system ljpeg (ijg lib)
GDCM_USE_SYSTEM_LJPEG:INTERNAL=OFF
//Use system openjpeg
GDCM_USE_SYSTEM_OPENJPEG:INTERNAL=OFF
//Use system OpenSSL
GDCM_USE_SYSTEM_OPENSSL:INTERNAL=OFF
//Use system papyrus3
GDCM_USE_SYSTEM_PAPYRUS3:INTERNAL=OFF
//Use system podofo (pdf)
GDCM_USE_SYSTEM_PODOFO:INTERNAL=OFF
//Use system poppler (pdf)
GDCM_USE_SYSTEM_POPPLER:INTERNAL=OFF
//Use system socket++
GDCM_USE_SYSTEM_SOCKETXX:INTERNAL=OFF
//Use system uuid
GDCM_USE_SYSTEM_UUID:INTERNAL=OFF
//Use system zlib
GDCM_USE_SYSTEM_ZLIB:INTERNAL=ON
//wxWidgets bridge ?
GDCM_USE_WXWIDGETS:INTERNAL=OFF
//Do not change
GDCM_WRITE_ODD_LENGTH:INTERNAL=OFF
//Result of TRY_COMPILE
GETTIMEOFDAY_GIVES_TZ:INTERNAL=TRUE
//Other test 
H5_CXX_HAVE_OFFSETOF:INTERNAL=1
//Other test 
H5_DEV_T_IS_SCALAR:INTERNAL=1
//Checking IF overflows normally converting floating-point to integer
// values
H5_FP_TO_INTEGER_OVERFLOW_WORKS:INTERNAL=1
//Result of TRY_COMPILE
H5_FP_TO_INTEGER_OVERFLOW_WORKS_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_FP_TO_INTEGER_OVERFLOW_WORKS_RUN:INTERNAL=0
//Checking IF accurately roundup converting floating-point to unsigned
// long long values
H5_FP_TO_ULLONG_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
H5_FP_TO_ULLONG_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_FP_TO_ULLONG_ACCURATE_RUN:INTERNAL=0
//Checking IF right maximum converting floating-point to unsigned
// long long values
H5_FP_TO_ULLONG_RIGHT_MAXIMUM:INTERNAL=
//Result of TRY_COMPILE
H5_FP_TO_ULLONG_RIGHT_MAXIMUM_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_FP_TO_ULLONG_RIGHT_MAXIMUM_RUN:INTERNAL=1
//Other test 
H5_GETTIMEOFDAY_GIVES_TZ:INTERNAL=1
//Have function alarm
H5_HAVE_ALARM:INTERNAL=1
//Other test 
H5_HAVE_ATTRIBUTE:INTERNAL=1
//Other test 
H5_HAVE_C99_DESIGNATED_INITIALIZER:INTERNAL=1
//Other test 
H5_HAVE_C99_FUNC:INTERNAL=1
//Have symbol tzname
H5_HAVE_DECL_TZNAME:INTERNAL=1
//Have function difftime
H5_HAVE_DIFFTIME:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h;memory.h;dlfcn.h
H5_HAVE_DLFCN_H:INTERNAL=1
//Have includes pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h;memory.h;dlfcn.h;features.h
H5_HAVE_FEATURES_H:INTERNAL=
//Have function fork
H5_HAVE_FORK:INTERNAL=1
//Have function frexpf
H5_HAVE_FREXPF:INTERNAL=1
//Have function frexpl
H5_HAVE_FREXPL:INTERNAL=1
//Have function fseeko
H5_HAVE_FSEEKO:INTERNAL=1
//Have function fseeko64
H5_HAVE_FSEEKO64:INTERNAL=
//Have function fstat64
H5_HAVE_FSTAT64:INTERNAL=1
//Have function ftello
H5_HAVE_FTELLO:INTERNAL=1
//Have function ftello64
H5_HAVE_FTELLO64:INTERNAL=
//Other test 
H5_HAVE_FUNCTION:INTERNAL=1
//Have function gethostname
H5_HAVE_GETHOSTNAME:INTERNAL=1
//Have function getpwuid
H5_HAVE_GETPWUID:INTERNAL=1
//Have function getrusage
H5_HAVE_GETRUSAGE:INTERNAL=1
//H5_HAVE_GETTIMEOFDAY
H5_HAVE_GETTIMEOFDAY:INTERNAL=1
//Have includes ;globus/common.h
H5_HAVE_GLOBUS_COMMON_H:INTERNAL=
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h;memory.h;dlfcn.h;inttypes.h
H5_HAVE_INTTYPES_H:INTERNAL=1
//Have function ioctl
H5_HAVE_IOCTL:INTERNAL=1
//Have includes ;io.h
H5_HAVE_IO_H:INTERNAL=
//Have library m;
H5_HAVE_LIBM:INTERNAL=1
//Have library socket;m
H5_HAVE_LIBSOCKET:INTERNAL=
//Have library ucb;m
H5_HAVE_LIBUCB:INTERNAL=
//Have library ws2_32;m
H5_HAVE_LIBWS2_32:INTERNAL=
//Have library wsock32;m
H5_HAVE_LIBWSOCK32:INTERNAL=
//Have function longjmp
H5_HAVE_LONGJMP:INTERNAL=1
//Have function lstat
H5_HAVE_LSTAT:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h;memory.h
H5_HAVE_MEMORY_H:INTERNAL=1
//Have includes ;mfhdf.h
H5_HAVE_MFHDF_H:INTERNAL=
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h;memory.h;dlfcn.h;inttypes.h;netinet/in.h
H5_HAVE_NETINET_IN_H:INTERNAL=1
//Other test 
H5_HAVE_OFF64_T:INTERNAL=
//Have includes ;pdb.h
H5_HAVE_PDB_H:INTERNAL=
//Have include ;pthread.h
H5_HAVE_PTHREAD_H:INTERNAL=1
//Have function random
H5_HAVE_RANDOM:INTERNAL=1
//Have function rand_r
H5_HAVE_RAND_R:INTERNAL=1
//Have function setjmp
H5_HAVE_SETJMP:INTERNAL=1
//Have include pthread.h;setjmp.h
H5_HAVE_SETJMP_H:INTERNAL=1
//Have function setsysinfo
H5_HAVE_SETSYSINFO:INTERNAL=
//Have function sigaction
H5_HAVE_SIGACTION:INTERNAL=1
//Have function siglongjmp
H5_HAVE_SIGLONGJMP:INTERNAL=1
//Have function signal
H5_HAVE_SIGNAL:INTERNAL=1
//Have function sigprocmask
H5_HAVE_SIGPROCMASK:INTERNAL=1
//Have function sigsetjmp
H5_HAVE_SIGSETJMP:INTERNAL=1
//Have function snprintf
H5_HAVE_SNPRINTF:INTERNAL=1
//Other test 
H5_HAVE_SOCKLEN_T:INTERNAL=1
//Have function srandom
H5_HAVE_SRANDOM:INTERNAL=1
//Have includes pthread.h;setjmp.h;srbclient.h
H5_HAVE_SRBCLIENT_H:INTERNAL=
//Have function stat64
H5_HAVE_STAT64:INTERNAL=1
//Other test 
H5_HAVE_STAT_ST_BLOCKS:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h
H5_HAVE_STDDEF_H:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h
H5_HAVE_STDINT_H:INTERNAL=1
//Have include stdint.h
H5_HAVE_STDINT_H_CXX:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h
H5_HAVE_STDLIB_H:INTERNAL=1
//Have function strdup
H5_HAVE_STRDUP:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h
H5_HAVE_STRINGS_H:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h
H5_HAVE_STRING_H:INTERNAL=1
//Other test 
H5_HAVE_STRUCT_TIMEZONE:INTERNAL=1
//Other test 
H5_HAVE_STRUCT_TM_TM_ZONE:INTERNAL=1
//Have function symlink
H5_HAVE_SYMLINK:INTERNAL=1
//Have function system
H5_HAVE_SYSTEM:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h
H5_HAVE_SYS_IOCTL_H:INTERNAL=1
//Have includes pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/proc.h
H5_HAVE_SYS_PROC_H:INTERNAL=
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h
H5_HAVE_SYS_RESOURCE_H:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h
H5_HAVE_SYS_SOCKET_H:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h
H5_HAVE_SYS_STAT_H:INTERNAL=1
H5_HAVE_SYS_SYSINFO_H:INTERNAL=
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h
H5_HAVE_SYS_TIMEB_H:INTERNAL=1
//H5_HAVE_SYS_TIME_GETTIMEOFDAY
H5_HAVE_SYS_TIME_GETTIMEOFDAY:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h
H5_HAVE_SYS_TIME_H:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h
H5_HAVE_SYS_TYPES_H:INTERNAL=1
//Other test 
H5_HAVE_TIMEZONE:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h
H5_HAVE_TIME_H:INTERNAL=1
//Have symbol TIOCGETD
H5_HAVE_TIOCGETD:INTERNAL=1
//Have symbol TIOCGWINSZ
H5_HAVE_TIOCGWINSZ:INTERNAL=1
//Other test 
H5_HAVE_TM_GMTOFF:INTERNAL=1
//Other test 
H5_HAVE_TM_ZONE:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h
H5_HAVE_UNISTD_H:INTERNAL=1
//Have function vasprintf
H5_HAVE_VASPRINTF:INTERNAL=1
//Have function vsnprintf
H5_HAVE_VSNPRINTF:INTERNAL=1
//Have function waitpid
H5_HAVE_WAITPID:INTERNAL=1
//Have includes pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h;memory.h;dlfcn.h;inttypes.h;netinet/in.h;winsock2.h
H5_HAVE_WINSOCK_H:INTERNAL=
//Other test 
H5_INLINE_TEST___inline:INTERNAL=1
//Other test 
H5_INLINE_TEST___inline__:INTERNAL=1
//Other test 
H5_INLINE_TEST_inline:INTERNAL=1
//checking IF accurately converting from integers to long double
H5_INTEGER_TO_LDOUBLE_ACCURATE:INTERNAL=1
//checking IF converting from long double to integers is accurate
H5_LDOUBLE_TO_INTEGER_ACCURATE:INTERNAL=1
//Checking IF converting from long double to integers works
H5_LDOUBLE_TO_INTEGER_WORKS:INTERNAL=1
//Result of TRY_COMPILE
H5_LDOUBLE_TO_INTEGER_WORKS_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LDOUBLE_TO_INTEGER_WORKS_RUN:INTERNAL=0
//Checking IF correctly converting long double to (unsigned) long
// long values
H5_LDOUBLE_TO_LLONG_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
H5_LDOUBLE_TO_LLONG_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LDOUBLE_TO_LLONG_ACCURATE_RUN:INTERNAL=0
//Checking IF correctly converting long double to unsigned int
// values
H5_LDOUBLE_TO_UINT_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
H5_LDOUBLE_TO_UINT_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LDOUBLE_TO_UINT_ACCURATE_RUN:INTERNAL=0
//Checking IF compiling long long to floating-point typecasts work
H5_LLONG_TO_FP_CAST_WORKS:INTERNAL=1
//Checking IF correctly converting (unsigned) long long to long
// double values
H5_LLONG_TO_LDOUBLE_CORRECT:INTERNAL=1
//Result of TRY_COMPILE
H5_LLONG_TO_LDOUBLE_CORRECT_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LLONG_TO_LDOUBLE_CORRECT_RUN:INTERNAL=0
//Other test 
H5_LONE_COLON:INTERNAL=
//Checking IF alignment restrictions are strictly enforced
H5_NO_ALIGNMENT_RESTRICTIONS:INTERNAL=1
//Result of TRY_COMPILE
H5_NO_ALIGNMENT_RESTRICTIONS_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_NO_ALIGNMENT_RESTRICTIONS_RUN:INTERNAL=0
//Width for printf for type `long long' or `__int64', us. `ll
H5_PRINTF_LL_WIDTH:INTERNAL="ll"
//CHECK_TYPE_SIZE: sizeof(char)
H5_SIZEOF_CHAR:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(double)
H5_SIZEOF_DOUBLE:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(float)
H5_SIZEOF_FLOAT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int)
H5_SIZEOF_INT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int16_t)
H5_SIZEOF_INT16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(int32_t)
H5_SIZEOF_INT32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int64_t)
H5_SIZEOF_INT64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(int8_t)
H5_SIZEOF_INT8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int_fast16_t)
H5_SIZEOF_INT_FAST16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(int_fast32_t)
H5_SIZEOF_INT_FAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int_fast64_t)
H5_SIZEOF_INT_FAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(int_fast8_t)
H5_SIZEOF_INT_FAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int_least16_t)
H5_SIZEOF_INT_LEAST16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(int_least32_t)
H5_SIZEOF_INT_LEAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int_least64_t)
H5_SIZEOF_INT_LEAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(int_least8_t)
H5_SIZEOF_INT_LEAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(long double)
H5_SIZEOF_LONG_DOUBLE:INTERNAL=16
//CHECK_TYPE_SIZE: sizeof(long long)
H5_SIZEOF_LONG_LONG:INTERNAL=8
//SizeOf for off64_t
H5_SIZEOF_OFF64_T:INTERNAL=0
//CHECK_TYPE_SIZE: sizeof(off_t)
H5_SIZEOF_OFF_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(short)
H5_SIZEOF_SHORT:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(uint16_t)
H5_SIZEOF_UINT16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(uint32_t)
H5_SIZEOF_UINT32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint64_t)
H5_SIZEOF_UINT64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(uint8_t)
H5_SIZEOF_UINT8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(uint_fast16_t)
H5_SIZEOF_UINT_FAST16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(uint_fast32_t)
H5_SIZEOF_UINT_FAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint_fast64_t)
H5_SIZEOF_UINT_FAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(uint_fast8_t)
H5_SIZEOF_UINT_FAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(uint_least16_t)
H5_SIZEOF_UINT_LEAST16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(uint_least32_t)
H5_SIZEOF_UINT_LEAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint_least64_t)
H5_SIZEOF_UINT_LEAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(uint_least8_t)
H5_SIZEOF_UINT_LEAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(unsigned)
H5_SIZEOF_UNSIGNED:INTERNAL=4
//SizeOf for __int64
H5_SIZEOF___INT64:INTERNAL=0
//Other test 
H5_STDC_HEADERS:INTERNAL=1
//Other test 
H5_SYSTEM_SCOPE_THREADS:INTERNAL=1
//Other test 
H5_TIME_WITH_SYS_TIME:INTERNAL=1
//Checking IF compiling unsigned long long to floating-point typecasts
// work
H5_ULLONG_TO_FP_CAST_WORKS:INTERNAL=1
//Checking IF converting unsigned long long to long double with
// precision
H5_ULLONG_TO_LDOUBLE_PRECISION:INTERNAL=1
//Result of TRY_COMPILE
H5_ULLONG_TO_LDOUBLE_PRECISION_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_ULLONG_TO_LDOUBLE_PRECISION_RUN:INTERNAL=0
//Checking IF accurately converting unsigned long to float values
H5_ULONG_TO_FLOAT_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
H5_ULONG_TO_FLOAT_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_ULONG_TO_FLOAT_ACCURATE_RUN:INTERNAL=0
//Checking IF accurately converting unsigned long long to floating-point
// values
H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE:INTERNAL=
//Result of TRY_COMPILE
H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE_RUN:INTERNAL=1
//Other test 
H5_VSNPRINTF_WORKS:INTERNAL=1
//Have include assert.h
HAVE_ASSERT_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_ATTRIBUTE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_C99_DESIGNATED_INITIALIZER:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_C99_FUNC:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_CHAR:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_DOUBLE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_FLOAT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_UNSIGNED_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_VOID_P:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_WORDS_BIGENDIAN:INTERNAL=TRUE
//Have include dlfcn.h
HAVE_DLFCN_H:INTERNAL=1
//Have include emmintrin.h
HAVE_EMMINTRIN_H:INTERNAL=1
//Have include fcntl.h
HAVE_FCNTL_H:INTERNAL=1
//Have include fenv.h
HAVE_FENV_H:INTERNAL=1
//Have function floor
HAVE_FLOOR:INTERNAL=1
//Result of TRY_COMPILE
HAVE_FUNCTION:INTERNAL=TRUE
//Have function getopt
HAVE_GETOPT:INTERNAL=1
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_CHAR:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_DOUBLE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_FLOAT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_LONG_DOUBLE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_LONG_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_OFF64_T:INTERNAL=FALSE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_OFF_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UNSIGNED:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF___INT64:INTERNAL=FALSE
//Have includes ieeefp.h
HAVE_IEEEFP_H:INTERNAL=
//Have include stdlib.h;unistd.h;inttypes.h
HAVE_INTTYPES_H:INTERNAL=1
//Have function isascii
HAVE_ISASCII:INTERNAL=1
// 
HAVE_ITK_CPP_FUNCTION:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF_CHAR:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF___INT64:INTERNAL=FALSE
//Have include limits.h
HAVE_LIMITS_H:INTERNAL=1
//Have includes malloc.h
HAVE_MALLOC_H:INTERNAL=
//Have function memmove
HAVE_MEMMOVE:INTERNAL=1
//Have include memory.h
HAVE_MEMORY_H:INTERNAL=1
//Have function memset
HAVE_MEMSET:INTERNAL=1
//Have function mmap
HAVE_MMAP:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h;sys/socket.h;sys/sockio.h;net/if.h;netinet/in.h
HAVE_NETINET_IN_H:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h;sys/socket.h;sys/sockio.h;net/if.h;netinet/in.h;net/if_dl.h;net/if_arp.h
HAVE_NET_IF_ARP_H:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h;sys/socket.h;sys/sockio.h;net/if.h;netinet/in.h;net/if_dl.h
HAVE_NET_IF_DL_H:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h;sys/socket.h;sys/sockio.h;net/if.h
HAVE_NET_IF_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_OFF64_T:INTERNAL=FALSE
//Have function pow
HAVE_POW:INTERNAL=1
//Result of TRY_COMPILE
HAVE_QNANHIBIT_VALUE:INTERNAL=TRUE
//Have include search.h
HAVE_SEARCH_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_SIZEOF_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_SOCKLEN_T:INTERNAL=TRUE
//Have function sqrt
HAVE_SQRT:INTERNAL=1
//Result of TRY_COMPILE
HAVE_STAT_ST_BLOCKS:INTERNAL=TRUE
//Have include stddef.h
HAVE_STDDEF_H:INTERNAL=1
//Have include stdint.h
HAVE_STDINT_H:INTERNAL=1
//Have include stdlib.h
HAVE_STDLIB_H:INTERNAL=1
//Have function strcasecmp
HAVE_STRCASECMP:INTERNAL=1
//Have function strchr
HAVE_STRCHR:INTERNAL=1
//Have include strings.h
HAVE_STRINGS_H:INTERNAL=1
//Have include string.h
HAVE_STRING_H:INTERNAL=1
//Have function strrchr
HAVE_STRRCHR:INTERNAL=1
//Have function strstr
HAVE_STRSTR:INTERNAL=1
//Have function strtol
HAVE_STRTOL:INTERNAL=1
//Have function strtoul
HAVE_STRTOUL:INTERNAL=1
//Result of TRY_COMPILE
HAVE_STRUCT_TIMEZONE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_STRUCT_TM_TM_ZONE:INTERNAL=TRUE
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h
HAVE_SYS_FILE_H:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h
HAVE_SYS_IOCTL_H:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h;sys/socket.h
HAVE_SYS_SOCKET_H:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h;sys/socket.h;sys/sockio.h
HAVE_SYS_SOCKIO_H:INTERNAL=1
//Have include sys/stat.h
HAVE_SYS_STAT_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_SYS_TIME_GETTIMEOFDAY:INTERNAL=TRUE
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h
HAVE_SYS_TIME_H:INTERNAL=1
//Have include sys/types.h
HAVE_SYS_TYPES_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_TIMEZONE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_TIME_GETTIMEOFDAY:INTERNAL=FALSE
//Result of TRY_COMPILE
HAVE_TM_GMTOFF:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_TM_ZONE:INTERNAL=TRUE
//Have include unistd.h
HAVE_UNISTD_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_VXL_BIG_ENDIAN:INTERNAL=TRUE
//Have includes windows.h
HAVE_WINDOWS_H:INTERNAL=
//Result of TRY_COMPILE
HAVE_WORDS_BIGENDIAN:INTERNAL=TRUE
//Allow External Library Building
HDF5_ALLOW_EXTERNAL_SUPPORT:INTERNAL=OFF
//Build HDF5 C++ Library
HDF5_BUILD_CPP_LIB:INTERNAL=ON
//Build HIGH Level HDF5 Library
HDF5_BUILD_HL_LIB:INTERNAL=OFF
//Disable compiler warnings
HDF5_DISABLE_COMPILER_WARNINGS:INTERNAL=OFF
//Enable the function stack tracing (for developer debugging).
HDF5_ENABLE_CODESTACK:INTERNAL=OFF
//Enable code coverage for Libraries and Programs
HDF5_ENABLE_COVERAGE:INTERNAL=OFF
//Enable deprecated public API symbols
HDF5_ENABLE_DEPRECATED_SYMBOLS:INTERNAL=ON
//Enable GPFS hints for the MPI/POSIX file driver
HDF5_ENABLE_GPFS:INTERNAL=OFF
//Enable datasets larger than memory
HDF5_ENABLE_HSIZET:INTERNAL=ON
//Enable support for large (64-bit) files on Linux.
HDF5_ENABLE_LARGE_FILE:INTERNAL=ON
//Enable parallel build (requires MPI)
HDF5_ENABLE_PARALLEL:INTERNAL=OFF
//Use SZip Filter
HDF5_ENABLE_SZIP_SUPPORT:INTERNAL=OFF
//Enable Threadsafety
HDF5_ENABLE_THREADSAFE:INTERNAL=OFF
//Enable API tracing capability
HDF5_ENABLE_TRACE:INTERNAL=OFF
//Indicate that a memory checker is used
HDF5_ENABLE_USING_MEMCHECKER:INTERNAL=OFF
//Enable Zlib Filters
HDF5_ENABLE_Z_LIB_SUPPORT:INTERNAL=ON
//Securely clear file buffers before writing to file
HDF5_Enable_Clear_File_Buffers:INTERNAL=ON
//Instrument The library
HDF5_Enable_Instrument:INTERNAL=OFF
//Used to pass variables between directories
HDF5_LIBRARIES_TO_EXPORT:INTERNAL=itkhdf5;itkhdf5_cpp
//Enable metadata trace file collection
HDF5_METADATA_TRACE_FILE:INTERNAL=OFF
//CPACK - include external libraries
HDF5_PACKAGE_EXTLIBS:INTERNAL=OFF
//Result of TRY_COMPILE
HDF5_PRINTF_LL_TEST_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
HDF5_PRINTF_LL_TEST_RUN:INTERNAL=0
//Whether to perform strict file format checks
HDF5_STRICT_FORMAT_CHECKS:INTERNAL=OFF
//Use the HDF5 1.6.x API by default
HDF5_USE_16_API_DEFAULT:INTERNAL=OFF
//Use the FLETCHER32 Filter
HDF5_USE_FILTER_FLETCHER32:INTERNAL=ON
//Use the NBIT Filter
HDF5_USE_FILTER_NBIT:INTERNAL=ON
//Use the SCALEOFFSET Filter
HDF5_USE_FILTER_SCALEOFFSET:INTERNAL=ON
//Use the SHUFFLE Filter
HDF5_USE_FILTER_SHUFFLE:INTERNAL=ON
//Use the PACKED BITS feature in h5dump
HDF5_USE_H5DUMP_PACKED_BITS:INTERNAL=ON
//IF data accuracy is guaranteed during data conversions
HDF5_WANT_DATA_ACCURACY:INTERNAL=ON
//exception handling functions is checked during data conversions
HDF5_WANT_DCONV_EXCEPTION:INTERNAL=ON
//Use Legacy Names for Libraries and Programs
HDF_LEGACY_NAMING:INTERNAL=ON
//Result of TRY_COMPILE
INLINE_TEST___inline:INTERNAL=TRUE
//Result of TRY_COMPILE
INLINE_TEST___inline__:INTERNAL=TRUE
//Result of TRY_COMPILE
INLINE_TEST_inline:INTERNAL=TRUE
//Request building Bridge modules
ITKGroup_Bridge:INTERNAL=OFF
//Request building Compatibility modules
ITKGroup_Compatibility:INTERNAL=OFF
//Request building Core modules
ITKGroup_Core:INTERNAL=ON
//Request building Filtering modules
ITKGroup_Filtering:INTERNAL=OFF
//Request building IO modules
ITKGroup_IO:INTERNAL=OFF
//Request building Nonunit modules
ITKGroup_Nonunit:INTERNAL=OFF
//Request building Numerics modules
ITKGroup_Numerics:INTERNAL=OFF
//Request building Registration modules
ITKGroup_Registration:INTERNAL=OFF
//Request building Remote modules
ITKGroup_Remote:INTERNAL=OFF
//Request building Segmentation modules
ITKGroup_Segmentation:INTERNAL=OFF
//Request building ThirdParty modules
ITKGroup_ThirdParty:INTERNAL=OFF
//Request building Video modules
ITKGroup_Video:INTERNAL=OFF
//ADVANCED property for variable: ITK_BUILD_ALL_MODULES_FOR_TESTS
ITK_BUILD_ALL_MODULES_FOR_TESTS-ADVANCED:INTERNAL=1
//Test ITK_COMPILER_DOES_NOT_NEED_MSSE2_FLAG
ITK_COMPILER_DOES_NOT_NEED_MSSE2_FLAG:INTERNAL=1
//Result of TRY_COMPILE
ITK_COMPILER_HAS_BLOCKS:INTERNAL=TRUE
//Test ITK_COMPILER_SUPPORTS_SSE2_32
ITK_COMPILER_SUPPORTS_SSE2_32:INTERNAL=1
//Test ITK_COMPILER_SUPPORTS_SSE2_64
ITK_COMPILER_SUPPORTS_SSE2_64:INTERNAL=1
//ADVANCED property for variable: ITK_COMPUTER_MEMORY_SIZE
ITK_COMPUTER_MEMORY_SIZE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_CPPCHECK_TEST
ITK_CPPCHECK_TEST-ADVANCED:INTERNAL=1
//Result of TRY_COMPILE
ITK_CPP_FUNCTION:INTERNAL=TRUE
//ADVANCED property for variable: ITK_DOXYGEN_CHM
ITK_DOXYGEN_CHM-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_DOCSET
ITK_DOXYGEN_DOCSET-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_ECLIPSEHELP
ITK_DOXYGEN_ECLIPSEHELP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_HTML
ITK_DOXYGEN_HTML-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_LATEX
ITK_DOXYGEN_LATEX-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_QHP
ITK_DOXYGEN_QHP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_RTF
ITK_DOXYGEN_RTF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_XML
ITK_DOXYGEN_XML-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DYNAMIC_LOADING
ITK_DYNAMIC_LOADING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_FORBID_DOWNLOADS
ITK_FORBID_DOWNLOADS-ADVANCED:INTERNAL=1
//Remove code that will become legacy in future releases completely.
ITK_FUTURE_LEGACY_REMOVE:INTERNAL=0
//Result of TRY_COMPILE
ITK_HAS_CPP11_ALIGNAS:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_HAS_CPP11_TYPETRAITS:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_HAS_GNU_ATTRIBUTE_ALIGNED:INTERNAL=TRUE
//Have include tr1/type_traits
ITK_HAS_STLTR1_TR1_TYPE_TRAITS:INTERNAL=1
//Have include type_traits
ITK_HAS_STLTR1_TYPE_TRAITS:INTERNAL=
//For __sync atomic builtins.
ITK_HAVE_SYNC_BUILTINS:INTERNAL=1
//ADVANCED property for variable: ITK_LEGACY_REMOVE
ITK_LEGACY_REMOVE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_LEGACY_SILENT
ITK_LEGACY_SILENT-ADVANCED:INTERNAL=1
//Result of TRY_COMPILE
ITK_SUPPORTS_FDSTREAM_HPP:INTERNAL=TRUE
//Result of TRY_COMPILE
ITK_SUPPORTS_TEMPLATED_FRIEND_FUNCTION_WITH_EMPTY_BRACKETS:INTERNAL=TRUE
//Result of TRY_COMPILE
ITK_SUPPORTS_TEMPLATED_FRIEND_FUNCTION_WITH_NULL_STRING:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_SUPPORTS_TEMPLATED_FRIEND_FUNCTION_WITH_TEMPLATE_ARGUMENTS:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_SUPPORTS_WCHAR_T_FILENAME_CSTYLEIO:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_SUPPORTS_WCHAR_T_FILENAME_IOSTREAMS_CONSTRUCTORS:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_TEST_SYNC_BUILTINS_COMPILED:INTERNAL=TRUE
//ADVANCED property for variable: ITK_USE_64BITS_IDS
ITK_USE_64BITS_IDS-ADVANCED:INTERNAL=1
//MODIFIED property for variable: ITK_USE_64BITS_IDS
ITK_USE_64BITS_IDS-MODIFIED:INTERNAL=ON
//ADVANCED property for variable: ITK_USE_BRAINWEB_DATA
ITK_USE_BRAINWEB_DATA-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_CONCEPT_CHECKING
ITK_USE_CONCEPT_CHECKING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_FFTWD
ITK_USE_FFTWD-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_FFTWF
ITK_USE_FFTWF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_FLOAT_SPACE_PRECISION
ITK_USE_FLOAT_SPACE_PRECISION-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_GPU
ITK_USE_GPU-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_KWSTYLE
ITK_USE_KWSTYLE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_STRICT_CONCEPT_CHECKING
ITK_USE_STRICT_CONCEPT_CHECKING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_DOUBLECONVERSION
ITK_USE_SYSTEM_DOUBLECONVERSION-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_EXPAT
ITK_USE_SYSTEM_EXPAT-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_FFTW
ITK_USE_SYSTEM_FFTW-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_GDCM
ITK_USE_SYSTEM_GDCM-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_HDF5
ITK_USE_SYSTEM_HDF5-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_JPEG
ITK_USE_SYSTEM_JPEG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_LIBRARIES
ITK_USE_SYSTEM_LIBRARIES-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_PNG
ITK_USE_SYSTEM_PNG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_SZIP
ITK_USE_SYSTEM_SZIP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_TIFF
ITK_USE_SYSTEM_TIFF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_VXL
ITK_USE_SYSTEM_VXL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_ZLIB
ITK_USE_SYSTEM_ZLIB-ADVANCED:INTERNAL=1
//Build external languages support
ITK_WRAPPING:INTERNAL=OFF
//ADVANCED property for variable: ITK_WRAP_JAVA
ITK_WRAP_JAVA-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_WRAP_PERL
ITK_WRAP_PERL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_WRAP_RUBY
ITK_WRAP_RUBY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_WRAP_TCL
ITK_WRAP_TCL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: KWSTYLE_EXECUTABLE
KWSTYLE_EXECUTABLE-ADVANCED:INTERNAL=1
//Result of TRY_RUN
KWSYS_CHAR_IS_SIGNED:INTERNAL=0
//Result of TRY_COMPILE
KWSYS_CHAR_IS_SIGNED_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ARGUMENT_DEPENDENT_LOOKUP_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ATOLL_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ATOL_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_BACKTRACE_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_CSTDDEF_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_CSTDIO_COMPILED:INTERNAL=TRUE
//Have include cxxabi.h
KWSYS_CXX_HAS_CXXABIH:INTERNAL=1
//Result of TRY_COMPILE
KWSYS_CXX_HAS_CXXABI_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_DLADDR_COMPILED:INTERNAL=TRUE
//Have include dlfcn.h
KWSYS_CXX_HAS_DLFCNH:INTERNAL=1
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ENVIRON_IN_STDLIB_H_COMPILED:INTERNAL=FALSE
//Have include execinfo.h
KWSYS_CXX_HAS_EXECINFOH:INTERNAL=1
//Result of TRY_COMPILE
KWSYS_CXX_HAS_FULL_SPECIALIZATION_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_LONG_LONG_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_MEMBER_TEMPLATES_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_NULL_TEMPLATE_ARGS_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_RLIMIT64_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_SETENV_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_UNSETENV_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_UTIMENSAT_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_UTIMES_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS__ATOI64_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS___INT64_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
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//Result of TRY_COMPILE
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//Result of TRY_COMPILE
KWSYS_C_TYPE_MACROS_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_IOS_HAVE_BINARY_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
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//Result of TRY_COMPILE
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//Result of TRY_COMPILE
KWSYS_IOS_USE_SSTREAM_COMPILED:INTERNAL=TRUE
//Result of TRY_RUN
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//Result of TRY_COMPILE
KWSYS_LFS_WORKS_COMPILED:INTERNAL=TRUE
//CHECK_TYPE_SIZE: sizeof(char)
KWSYS_SIZEOF_CHAR:INTERNAL=1
//CHECK_TYPE_SIZE: __int64 unknown
KWSYS_SIZEOF___INT64:INTERNAL=
//Result of TRY_COMPILE
KWSYS_STAT_HAS_ST_MTIM_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_MAX_SIZE_ARGUMENT_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_OBJECTS_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_REBIND_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_TEMPLATE_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ITERATOR_TRAITS_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_WSTRING_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAVE_STD_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_STRING_HAVE_NEQ_CHAR_COMPILED:INTERNAL=TRUE
//Have include sys/types.h;ifaddrs.h
KWSYS_SYS_HAS_IFADDRS_H:INTERNAL=1
//Result of TRY_COMPILE
LONE_COLON:INTERNAL=FALSE
//ADVANCED property for variable: MAXIMUM_NUMBER_OF_HEADERS
MAXIMUM_NUMBER_OF_HEADERS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_AnalyzeObjectMapIO
Module_AnalyzeObjectMapIO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_BridgeNumPy
Module_BridgeNumPy-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_HigherOrderAccurateGradient
Module_HigherOrderAccurateGradient-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_IOFDF
Module_IOFDF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_IOSTL
Module_IOSTL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_IOTransformDCMTK
Module_IOTransformDCMTK-ADVANCED:INTERNAL=1
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Module_ITKAnisotropicSmoothing:INTERNAL=OFF
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Module_ITKAntiAlias:INTERNAL=OFF
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Module_ITKBiasCorrection:INTERNAL=OFF
//Request building ITKBinaryMathematicalMorphology
Module_ITKBinaryMathematicalMorphology:INTERNAL=OFF
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Module_ITKBioCell:INTERNAL=OFF
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Module_ITKClassifiers:INTERNAL=OFF
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Module_ITKColormap:INTERNAL=OFF
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Module_ITKCommon:INTERNAL=OFF
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Module_ITKConnectedComponents:INTERNAL=OFF
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Module_ITKConvolution:INTERNAL=OFF
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Module_ITKCurvatureFlow:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDCMTK
Module_ITKDCMTK-ADVANCED:INTERNAL=1
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Module_ITKDICOMParser:INTERNAL=OFF
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Module_ITKDeconvolution:INTERNAL=OFF
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Module_ITKDeformableMesh:INTERNAL=OFF
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Module_ITKDenoising:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDeprecated
Module_ITKDeprecated-ADVANCED:INTERNAL=1
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Module_ITKDiffusionTensorImage:INTERNAL=OFF
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Module_ITKDisplacementField:INTERNAL=OFF
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Module_ITKDistanceMap:INTERNAL=OFF
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Module_ITKDoubleConversion:INTERNAL=OFF
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Module_ITKEigen:INTERNAL=OFF
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Module_ITKExpat:INTERNAL=OFF
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Module_ITKFEM:INTERNAL=OFF
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Module_ITKFEMRegistration:INTERNAL=OFF
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Module_ITKFFT:INTERNAL=OFF
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Module_ITKFastMarching:INTERNAL=OFF
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Module_ITKFiniteDifference:INTERNAL=OFF
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Module_ITKGDCM:INTERNAL=OFF
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Module_ITKGIFTI:INTERNAL=OFF
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Module_ITKGPUCommon:INTERNAL=OFF
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Module_ITKGPUFiniteDifference:INTERNAL=OFF
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Module_ITKGPUImageFilterBase:INTERNAL=OFF
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Module_ITKGPUSmoothing:INTERNAL=OFF
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Module_ITKGPUThresholding:INTERNAL=OFF
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Module_ITKHDF5:INTERNAL=OFF
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Module_ITKIOBMP:INTERNAL=OFF
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Module_ITKIOBioRad:INTERNAL=OFF
//Request building ITKIOCSV
Module_ITKIOCSV:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIODCMTK
Module_ITKIODCMTK-ADVANCED:INTERNAL=1
//Request building ITKIOGDCM
Module_ITKIOGDCM:INTERNAL=OFF
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Module_ITKIOGE:INTERNAL=OFF
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Module_ITKIOGIPL:INTERNAL=OFF
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Module_ITKIOHDF5:INTERNAL=OFF
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Module_ITKIOIPL:INTERNAL=OFF
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Module_ITKIOImageBase:INTERNAL=OFF
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Module_ITKIOJPEG:INTERNAL=OFF
//Request building ITKIOLSM
Module_ITKIOLSM:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOMINC
Module_ITKIOMINC-ADVANCED:INTERNAL=1
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Module_ITKIOMRC:INTERNAL=OFF
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Module_ITKIOMesh:INTERNAL=OFF
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Module_ITKIOMeta:INTERNAL=OFF
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Module_ITKIONIFTI:INTERNAL=OFF
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Module_ITKIONRRD:INTERNAL=OFF
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Module_ITKIOPNG:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOPhilipsREC
Module_ITKIOPhilipsREC-ADVANCED:INTERNAL=1
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//Request building ITKLevelSetsv4
Module_ITKLevelSetsv4:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKLevelSetsv4Visualization
Module_ITKLevelSetsv4Visualization-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKMINC
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//ADVANCED property for variable: Module_ITKOpenJPEG
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//ADVANCED property for variable: Module_ITKVideoBridgeOpenCV
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//ADVANCED property for variable: Module_ITKVideoBridgeVXL
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//Request building ITKVoronoi
Module_ITKVoronoi:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVtkGlue
Module_ITKVtkGlue-ADVANCED:INTERNAL=1
//MODIFIED property for variable: Module_ITKVtkGlue
Module_ITKVtkGlue-MODIFIED:INTERNAL=ON
//Request building ITKWatersheds
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//Request building ITKZLIB
Module_ITKZLIB:INTERNAL=OFF
//ADVANCED property for variable: Module_LabelErodeDilate
Module_LabelErodeDilate-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_LesionSizingToolkit
Module_LesionSizingToolkit-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_MGHIO
Module_MGHIO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_MinimalPathExtraction
Module_MinimalPathExtraction-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ParabolicMorphology
Module_ParabolicMorphology-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SCIFIO
Module_SCIFIO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SkullStrip
Module_SkullStrip-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SmoothingRecursiveYvvGaussianFilter
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//ADVANCED property for variable: Module_SphinxExamples
Module_SphinxExamples-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SplitComponents
Module_SplitComponents-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SubdivisionQuadEdgeMeshFilter
Module_SubdivisionQuadEdgeMeshFilter-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_VariationalRegistration
Module_VariationalRegistration-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_WikiExamples
Module_WikiExamples-ADVANCED:INTERNAL=1
//Have library c
NOT_NEED_LIBNSL:INTERNAL=1
OPENJPEG_INSTALL_PACKAGE_DIR:INTERNAL=lib/gdcmopenjpeg-2.0
//ADVANCED property for variable: PERL_EXECUTABLE
PERL_EXECUTABLE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: PYTHON_EXECUTABLE
PYTHON_EXECUTABLE-ADVANCED:INTERNAL=1
//The 22nd bit of 32-bit floating-point quiet NaN.
QNANHIBIT:INTERNAL=1
//Result of TRY_RUN
QNANHIBIT_VALUE:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int)
SIZEOF_INT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(long)
SIZEOF_LONG:INTERNAL=8
//Have function strsignal
SOCKETXX_HAVE_STRSIGNAL:INTERNAL=1
//Result of TRY_COMPILE
STDC_HEADERS:INTERNAL=TRUE
//Result of TRY_COMPILE
SYSTEM_SCOPE_THREADS:INTERNAL=TRUE
//Result of TRY_COMPILE
TIME_WITH_SYS_TIME:INTERNAL=TRUE
//ADVANCED property for variable: USE_COMPILER_HIDDEN_VISIBILITY
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//VXL test 
VCL_ALLOWS_INLINE_INSTANTIATION:INTERNAL=1
//VXL test 
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//VXL test 
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//VXL test 
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//VXL test 
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//VXL test 
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//VXL test  (successful run)
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//Result of TRY_COMPILE
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//VXL test  (successful run)
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//Result of TRY_COMPILE
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//Have include algorithm
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//Have include complex
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//Have include csetjmp
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//Have include cstddef
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//Have include cstdio
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//Have include cstdlib
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//Have include ios
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//Have include iostream
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//Have include istream
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//Have include iterator
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//Have include limits
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//Have include list
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//Have include locale
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//Have include map
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//Have include numeric
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//Have include stack
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From matt.mccormick at kitware.com  Fri Nov  6 14:15:03 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 6 Nov 2015 14:15:03 -0500
Subject: [ITK] [ITK-users] Compile ITK for iPhone
In-Reply-To: <1446819343470-7588145.post@n2.nabble.com>
References: <1446685276695-7588136.post@n2.nabble.com>
 <1446819343470-7588145.post@n2.nabble.com>
Message-ID: <CALzTN-RRRvu0yPGVCvBFXpcaTWdA8u0DsTQmrGbSU-42NNiDaA@mail.gmail.com>

Hi Yassim,

It sounds like those changes are for ITKv3, and they were not merged
into ITK.  There also is not an iOS submission yet to the Nightly
Dashboard [1]. Following the principle "if it is not tested, it is
broken", other fixes are likely required.

On the plus side, recent ITKv4 has very good support for
cross-compiling.  See these post for cross-compiling instructions with
other tool chains:

  http://www.kitware.com/blog/home/post/912

Essentially,

1) Use the latest CMake.

2) Pass in a toolchain file with CMAKE_TOOLCHAIN_FILE.  Maybe this
project will work: [2]

3) Pass in a path to an emulator with CMAKE_CROSSCOMPILING_EMULATOR.
Maybe this project will work: [3]

Then, considering contributing any fixes upstream [4], and starting a
Nightly dashboard submission [5].

Please let use know how it goes.

Thanks,
Matt

[1] https://open.cdash.org/index.php?project=Insight#

[2] https://github.com/cristeab/ios-cmake

[3] https://github.com/phonegap/ios-sim

[4] https://cmake.org/Wiki/ITK/Git

[5] https://cmake.org/Wiki/ITK/Git/Dashboard

On Fri, Nov 6, 2015 at 9:15 AM, Yassmin <yassminabdallah at gmail.com> wrote:
> any recommendation please?
>
>
>
> --
> View this message in context: http://itk-insight-users.2283740.n2.nabble.com/Compile-ITK-for-iPhone-tp7588136p7588145.html
> Sent from the ITK Insight Users mailing list archive at Nabble.com.
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users

From simpsona at gmail.com  Fri Nov  6 17:33:09 2015
From: simpsona at gmail.com (Amber Simpson)
Date: Fri, 6 Nov 2015 17:33:09 -0500
Subject: [ITK] [ITK-users] problems installing ITK 4.8.1 on OS X 10.9.5
Message-ID: <CAMj5ekFHo5PmBRKLZ-k+9e29-6NkMwE=8UekmQYHnGbwrYfp8A@mail.gmail.com>

Hi All,

I'm having trouble compiling ITK, specifically itkvtkglue (see below),
using VTK 6.3.0 and CMake 3.4.0-rc3. CMakeCache.txt is attached. Any
suggestions?

Thanks,
Amber

--------------

[ 99%] Built target ITKRegionGrowing-all

[ 99%] Built target ITKRegistrationMethodsv4-all

[ 99%] Built target ITKSpatialFunction-all

[ 99%] Built target itkTestDriver

[ 99%] Built target ITKTestKernel-all

[ 99%] Built target ITKVTK

[ 99%] Built target ITKVTK-all

[ 99%] Built target ITKVideoCore

[ 99%] Built target ITKVideoCore-all

[ 99%] Built target ITKVideoFiltering-all

[100%] Built target ITKVideoIO

[100%] Built target ITKVideoIO-all

[100%] Built target ITKVoronoi-all

[100%] Building CXX object
Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/QuickView.cxx.o

*/Users/simpsonl/Software/ITK-4.8.1/Modules/Bridge/VtkGlue/src/QuickView.cxx:25:10:
**fatal error: **'vtkVersion.h' file not*

*      found*

#include "vtkVersion.h"

*         ^*

1 error generated.

make[2]: ***
[Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/QuickView.cxx.o]
Error 1

make[1]: *** [Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/all]
Error 2

make: *** [all] Error 2
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://public.kitware.com/pipermail/community/attachments/20151106/2348b514/attachment-0001.html>
-------------- next part --------------
# This is the CMakeCache file.
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# It was generated by CMake: /Applications/CMake.app/Contents/bin/cmake
# You can edit this file to change values found and used by cmake.
# If you do not want to change any of the values, simply exit the editor.
# If you do want to change a value, simply edit, save, and exit the editor.
# The syntax for the file is as follows:
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# TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!.
# VALUE is the current value for the KEY.

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# EXTERNAL cache entries
########################

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//Build the Examples directory.
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BUILD_TESTING:BOOL=OFF

//Path to a program.
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//CXX compiler
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//Install path prefix, prepended onto install directories.
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//Path to a program.
CMAKE_LINKER:FILEPATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld

//Path to a program.
CMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/make

//Flags used by the linker during the creation of modules.
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//Flags used by the linker during debug builds.
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//Flags used by the linker during release minsize builds.
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//Flags used by the linker during release builds.
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//Flags used by the linker during Release with Debug Info builds.
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//Path to a program.
CMAKE_NM:FILEPATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/nm

//Path to a program.
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//Path to a program.
CMAKE_OBJDUMP:FILEPATH=CMAKE_OBJDUMP-NOTFOUND

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//Minimum OS X version to target for deployment (at runtime); newer
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//Value Computed by CMake
CMAKE_PROJECT_NAME:STATIC=ITK

//Path to a program.
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//Flags used by the linker during release minsize builds.
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//Flags used by the linker during release builds.
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//Flags used by the linker during Release with Debug Info builds.
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//If set, runtime paths are not added when installing shared libraries,
// but are added when building.
CMAKE_SKIP_INSTALL_RPATH:BOOL=NO

//If set, runtime paths are not added when using shared libraries.
CMAKE_SKIP_RPATH:BOOL=NO

//Flags used by the linker during the creation of static libraries.
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//Flags used by the linker during debug builds.
CMAKE_STATIC_LINKER_FLAGS_DEBUG:STRING=

//Flags used by the linker during release minsize builds.
CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL:STRING=

//Flags used by the linker during release builds.
CMAKE_STATIC_LINKER_FLAGS_RELEASE:STRING=

//Flags used by the linker during Release with Debug Info builds.
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//Path to a program.
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//Path to a library.
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//Enable to build OSX bundles
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//Enable to build OSX Drag And Drop package
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//Enable to build IFW packages
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//Enable to build OSX X11 packages
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//Enable to build PackageMaker packages
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//Enable to build RPM packages
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//Enable to build STGZ packages
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//Enable to build TBZ2 packages
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//Enable to build TGZ packages
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//Enable to build TXZ packages
CPACK_BINARY_TXZ:BOOL=OFF

//Enable to build TBZ2 source packages
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//Enable to build TGZ source packages
CPACK_SOURCE_TGZ:BOOL=ON

//Enable to build TXZ source packages
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//Enable to build ZIP source packages
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//Path to a program.
CPPCHECK_EXECUTABLE:FILEPATH=CPPCHECK_EXECUTABLE-NOTFOUND

//Path to search for cppcheck
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//Test CXX_HAS_WARNING-Wformat=2
CXX_HAS_WARNING-Wformat:UNINITIALIZED=2:INTERNAL=1

//Test C_HAS_WARNING-Wformat=2
C_HAS_WARNING-Wformat:UNINITIALIZED=2:INTERNAL=1

//Path to a library.
EXECINFO_LIB:FILEPATH=EXECINFO_LIB-NOTFOUND

//Semicolon-separated list of local directories holding data objects
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//Additional URL templates for the ExternalData CMake script to
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//Value Computed by CMake
FilteringExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/Filtering

//Value Computed by CMake
FilteringExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/Filtering

//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
GDCMJPEG_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmjpeg

//Value Computed by CMake
GDCMOPENJPEG_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg-v2

//Value Computed by CMake
GDCMOPENJPEG_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg-v2

//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
GDCMUUID_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmuuid

//Value Computed by CMake
GDCMUUID_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmuuid

//Value Computed by CMake
GDCM_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/GDCM/src/gdcm

//Value Computed by CMake
GDCM_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/GDCM/src/gdcm

//Value Computed by CMake
HDF5_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/HDF5/src/itkhdf5

//Build with library install_name set to the installation path
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//Value Computed by CMake
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//Value Computed by CMake
HDF5_CPP_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/HDF5/src/itkhdf5/c++

//Value Computed by CMake
HDF5_CPP_SRC_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/HDF5/src/itkhdf5/c++/src

//Value Computed by CMake
HDF5_CPP_SRC_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/HDF5/src/itkhdf5/c++/src

//Value Computed by CMake
HDF5_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/HDF5/src/itkhdf5

//Value Computed by CMake
HDF5_SRC_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/HDF5/src/itkhdf5/src

//Value Computed by CMake
HDF5_SRC_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/HDF5/src/itkhdf5/src

//Value Computed by CMake
IOExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/IO

//Value Computed by CMake
IOExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/IO

//Value Computed by CMake
ITK-Convolution_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/Convolution

//Value Computed by CMake
ITK-Convolution_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/Convolution

//Value Computed by CMake
ITK-Deconvolution_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/Deconvolution

//Value Computed by CMake
ITK-Deconvolution_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/Deconvolution

//Value Computed by CMake
ITK3P_EXPAT_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/Expat/src/expat

//Value Computed by CMake
ITK3P_EXPAT_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/Expat/src/expat

//Value Computed by CMake
ITK3P_JPEG_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/JPEG/src/itkjpeg

//Value Computed by CMake
ITK3P_JPEG_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/JPEG/src/itkjpeg

//Value Computed by CMake
ITK3P_MetaIO_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/MetaIO/src/MetaIO/src

//Value Computed by CMake
ITK3P_MetaIO_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/MetaIO/src/MetaIO/src

//Value Computed by CMake
ITK3P_NrrdIO_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/NrrdIO/src/NrrdIO

//Value Computed by CMake
ITK3P_NrrdIO_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/NrrdIO/src/NrrdIO

//Value Computed by CMake
ITK3P_PNG_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/PNG/src/itkpng

//Value Computed by CMake
ITK3P_PNG_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/PNG/src/itkpng

//Value Computed by CMake
ITK3P_TIFF_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/TIFF/src/itktiff

//Value Computed by CMake
ITK3P_TIFF_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/TIFF/src/itktiff

//Value Computed by CMake
ITK3P_ZLIB_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/ZLIB/src/itkzlib

//Value Computed by CMake
ITK3P_ZLIB_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/ZLIB/src/itkzlib

//Value Computed by CMake
ITKAnisotropicSmoothing_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/AnisotropicSmoothing

//Value Computed by CMake
ITKAnisotropicSmoothing_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/AnisotropicSmoothing

//Value Computed by CMake
ITKAntiAlias_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/AntiAlias

//Value Computed by CMake
ITKAntiAlias_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/AntiAlias

//Value Computed by CMake
ITKBiasCorrection_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/BiasCorrection

//Dependencies for the target
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//Value Computed by CMake
ITKBiasCorrection_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/BiasCorrection

//Value Computed by CMake
ITKBinaryMathematicalMorphology_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/BinaryMathematicalMorphology

//Value Computed by CMake
ITKBinaryMathematicalMorphology_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/BinaryMathematicalMorphology

//Value Computed by CMake
ITKBioCell_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/BioCell

//Dependencies for the target
ITKBioCell_LIB_DEPENDS:STATIC=general;ITKMesh;

//Value Computed by CMake
ITKBioCell_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/BioCell

//Value Computed by CMake
ITKClassifiers_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/Classifiers

//Value Computed by CMake
ITKClassifiers_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/Classifiers

//Value Computed by CMake
ITKColormap_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/Colormap

//Value Computed by CMake
ITKColormap_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/Colormap

//Value Computed by CMake
ITKCommon_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/Common

//Dependencies for the target
ITKCommon_LIB_DEPENDS:STATIC=general;itksys;general;ITKVNLInstantiation;general;itkdouble-conversion;general;-lm;

//Value Computed by CMake
ITKCommon_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/Common

//Value Computed by CMake
ITKConnectedComponents_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/ConnectedComponents

//Value Computed by CMake
ITKConnectedComponents_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/ConnectedComponents

//Value Computed by CMake
ITKCurvatureFlow_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/CurvatureFlow

//Value Computed by CMake
ITKCurvatureFlow_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/CurvatureFlow

//Value Computed by CMake
ITKDICOMParser_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/DICOMParser

//Dependencies for target
ITKDICOMParser_LIB_DEPENDS:STATIC=

//Value Computed by CMake
ITKDICOMParser_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/DICOMParser

//Value Computed by CMake
ITKDeformableMesh_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/DeformableMesh

//Value Computed by CMake
ITKDeformableMesh_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/DeformableMesh

//Value Computed by CMake
ITKDenoising_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/Denoising

//Value Computed by CMake
ITKDenoising_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/Denoising

//Value Computed by CMake
ITKDiffusionTensorImage_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/DiffusionTensorImage

//Value Computed by CMake
ITKDiffusionTensorImage_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/DiffusionTensorImage

//Value Computed by CMake
ITKDisplacementField_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/DisplacementField

//Value Computed by CMake
ITKDisplacementField_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/DisplacementField

//Value Computed by CMake
ITKDistanceMap_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/DistanceMap

//Value Computed by CMake
ITKDistanceMap_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/DistanceMap

//Value Computed by CMake
ITKDoubleConversion_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/DoubleConversion

//Value Computed by CMake
ITKDoubleConversion_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/DoubleConversion

//Dependencies for target
ITKEXPAT_LIB_DEPENDS:STATIC=

//Value Computed by CMake
ITKEigen_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/Eigen

//Value Computed by CMake
ITKEigen_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/Eigen

//Value Computed by CMake
ITKExpat_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/Expat

//Value Computed by CMake
ITKExpat_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/Expat

//Value Computed by CMake
ITKFEMRegistration_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/FEM

//Value Computed by CMake
ITKFEMRegistration_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/FEM

//Value Computed by CMake
ITKFEM_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/FEM

//Dependencies for the target
ITKFEM_LIB_DEPENDS:STATIC=general;ITKMetaIO;general;ITKCommon;general;ITKStatistics;general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKOptimizers;

//Value Computed by CMake
ITKFEM_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/FEM

//Value Computed by CMake
ITKFFT_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/FFT

//Value Computed by CMake
ITKFFT_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/FFT

//Value Computed by CMake
ITKFastMarching_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/FastMarching

//Value Computed by CMake
ITKFastMarching_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/FastMarching

//Value Computed by CMake
ITKFiniteDifference_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/FiniteDifference

//Value Computed by CMake
ITKFiniteDifference_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/FiniteDifference

//Value Computed by CMake
ITKGDCM_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/GDCM

//Value Computed by CMake
ITKGDCM_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/GDCM

//Value Computed by CMake
ITKGIFTI_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/GIFTI

//Value Computed by CMake
ITKGIFTI_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/GIFTI

//Value Computed by CMake
ITKGPUAnisotropicSmoothing_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/GPUAnisotropicSmoothing

//Value Computed by CMake
ITKGPUAnisotropicSmoothing_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/GPUAnisotropicSmoothing

//Value Computed by CMake
ITKGPUCommon_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/GPUCommon

//Value Computed by CMake
ITKGPUCommon_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/GPUCommon

//Value Computed by CMake
ITKGPUFiniteDifference_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/GPUFiniteDifference

//Value Computed by CMake
ITKGPUFiniteDifference_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/GPUFiniteDifference

//Value Computed by CMake
ITKGPUImageFilterBase_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/GPUImageFilterBase

//Value Computed by CMake
ITKGPUImageFilterBase_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/GPUImageFilterBase

//Value Computed by CMake
ITKGPUPDEDeformable_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/GPUPDEDeformable

//Value Computed by CMake
ITKGPUPDEDeformable_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/GPUPDEDeformable

//Value Computed by CMake
ITKGPURegistrationCommon_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/GPUCommon

//Value Computed by CMake
ITKGPURegistrationCommon_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/GPUCommon

//Value Computed by CMake
ITKGPUSmoothing_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/GPUSmoothing

//Value Computed by CMake
ITKGPUSmoothing_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/GPUSmoothing

//Value Computed by CMake
ITKGPUThresholding_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/GPUThresholding

//Value Computed by CMake
ITKGPUThresholding_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/GPUThresholding

//Value Computed by CMake
ITKHDF5_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/HDF5

//Value Computed by CMake
ITKHDF5_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/HDF5

//Value Computed by CMake
ITKIOBMP_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/BMP

//Dependencies for the target
ITKIOBMP_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOBMP_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/BMP

//Value Computed by CMake
ITKIOBioRad_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/BioRad

//Dependencies for the target
ITKIOBioRad_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOBioRad_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/BioRad

//Value Computed by CMake
ITKIOCSV_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/CSV

//Dependencies for the target
ITKIOCSV_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOCSV_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/CSV

//Value Computed by CMake
ITKIOGDCM_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/GDCM

//Dependencies for the target
ITKIOGDCM_LIB_DEPENDS:STATIC=general;gdcmDICT;general;gdcmMSFF;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOGDCM_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/GDCM

//Value Computed by CMake
ITKIOGE_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/GE

//Dependencies for the target
ITKIOGE_LIB_DEPENDS:STATIC=general;ITKIOIPL;

//Value Computed by CMake
ITKIOGE_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/GE

//Value Computed by CMake
ITKIOGIPL_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/GIPL

//Dependencies for the target
ITKIOGIPL_LIB_DEPENDS:STATIC=general;ITKIOImageBase;general;itkzlib;

//Value Computed by CMake
ITKIOGIPL_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/GIPL

//Value Computed by CMake
ITKIOHDF5_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/HDF5

//Dependencies for the target
ITKIOHDF5_LIB_DEPENDS:STATIC=general;itkhdf5_cpp;general;itkhdf5;general;ITKIOImageBase;general;itkhdf5_cpp;general;itkhdf5;

//Value Computed by CMake
ITKIOHDF5_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/HDF5

//Value Computed by CMake
ITKIOIPL_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/IPL

//Dependencies for the target
ITKIOIPL_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOIPL_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/IPL

//Value Computed by CMake
ITKIOImageBase_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/ImageBase

//Dependencies for the target
ITKIOImageBase_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKIOImageBase_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/ImageBase

//Value Computed by CMake
ITKIOJPEG_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/JPEG

//Dependencies for the target
ITKIOJPEG_LIB_DEPENDS:STATIC=general;itkjpeg;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOJPEG_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/JPEG

//Value Computed by CMake
ITKIOLSM_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/LSM

//Dependencies for the target
ITKIOLSM_LIB_DEPENDS:STATIC=general;ITKIOTIFF;

//Value Computed by CMake
ITKIOLSM_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/LSM

//Value Computed by CMake
ITKIOMRC_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/MRC

//Dependencies for the target
ITKIOMRC_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOMRC_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/MRC

//Value Computed by CMake
ITKIOMesh_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/Mesh

//Dependencies for the target
ITKIOMesh_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKgiftiio;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOMesh_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/Mesh

//Value Computed by CMake
ITKIOMeta_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/Meta

//Dependencies for the target
ITKIOMeta_LIB_DEPENDS:STATIC=general;ITKMetaIO;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOMeta_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/Meta

//Value Computed by CMake
ITKIONIFTI_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/NIFTI

//Dependencies for the target
ITKIONIFTI_LIB_DEPENDS:STATIC=general;ITKznz;general;ITKniftiio;general;ITKIOImageBase;

//Value Computed by CMake
ITKIONIFTI_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/NIFTI

//Value Computed by CMake
ITKIONRRD_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/NRRD

//Dependencies for the target
ITKIONRRD_LIB_DEPENDS:STATIC=general;ITKNrrdIO;general;ITKIOImageBase;

//Value Computed by CMake
ITKIONRRD_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/NRRD

//Value Computed by CMake
ITKIOPNG_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/PNG

//Dependencies for the target
ITKIOPNG_LIB_DEPENDS:STATIC=general;itkpng;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOPNG_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/PNG

//Value Computed by CMake
ITKIORAW_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/RAW

//Value Computed by CMake
ITKIORAW_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/RAW

//Value Computed by CMake
ITKIOSiemens_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/Siemens

//Dependencies for the target
ITKIOSiemens_LIB_DEPENDS:STATIC=general;ITKIOIPL;general;ITKIOGE;

//Value Computed by CMake
ITKIOSiemens_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/Siemens

//Value Computed by CMake
ITKIOSpatialObjects_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/SpatialObjects

//Dependencies for the target
ITKIOSpatialObjects_LIB_DEPENDS:STATIC=general;ITKSpatialObjects;general;ITKIOXML;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOSpatialObjects_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/SpatialObjects

//Value Computed by CMake
ITKIOStimulate_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/Stimulate

//Dependencies for the target
ITKIOStimulate_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOStimulate_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/Stimulate

//Value Computed by CMake
ITKIOTIFF_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/TIFF

//Dependencies for the target
ITKIOTIFF_LIB_DEPENDS:STATIC=general;itktiff;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOTIFF_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/TIFF

//Value Computed by CMake
ITKIOTransformBase_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/TransformBase

//Dependencies for the target
ITKIOTransformBase_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKIOTransformBase_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/TransformBase

//Value Computed by CMake
ITKIOTransformHDF5_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/TransformHDF5

//Dependencies for the target
ITKIOTransformHDF5_LIB_DEPENDS:STATIC=general;ITKIOTransformBase;general;itkhdf5_cpp;general;itkhdf5;

//Value Computed by CMake
ITKIOTransformHDF5_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/TransformHDF5

//Value Computed by CMake
ITKIOTransformInsightLegacy_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/TransformInsightLegacy

//Dependencies for the target
ITKIOTransformInsightLegacy_LIB_DEPENDS:STATIC=general;ITKIOTransformBase;general;itkdouble-conversion;

//Value Computed by CMake
ITKIOTransformInsightLegacy_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/TransformInsightLegacy

//Value Computed by CMake
ITKIOTransformMatlab_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/TransformMatlab

//Dependencies for the target
ITKIOTransformMatlab_LIB_DEPENDS:STATIC=general;ITKIOTransformBase;

//Value Computed by CMake
ITKIOTransformMatlab_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/TransformMatlab

//Value Computed by CMake
ITKIOVTK_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/VTK

//Dependencies for the target
ITKIOVTK_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOVTK_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/VTK

//Value Computed by CMake
ITKIOXML_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/IO/XML

//Dependencies for the target
ITKIOXML_LIB_DEPENDS:STATIC=general;ITKEXPAT;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOXML_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/IO/XML

//Value Computed by CMake
ITKImageAdaptors_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/ImageAdaptors

//Value Computed by CMake
ITKImageAdaptors_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/ImageAdaptors

//Value Computed by CMake
ITKImageCompare_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageCompare

//Value Computed by CMake
ITKImageCompare_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageCompare

//Value Computed by CMake
ITKImageCompose_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageCompose

//Value Computed by CMake
ITKImageCompose_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageCompose

//Value Computed by CMake
ITKImageFeature_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageFeature

//Value Computed by CMake
ITKImageFeature_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageFeature

//Value Computed by CMake
ITKImageFilterBase_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageFilterBase

//Value Computed by CMake
ITKImageFilterBase_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageFilterBase

//Value Computed by CMake
ITKImageFunction_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/ImageFunction

//Value Computed by CMake
ITKImageFunction_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/ImageFunction

//Value Computed by CMake
ITKImageFusion_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageFusion

//Value Computed by CMake
ITKImageFusion_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageFusion

//Value Computed by CMake
ITKImageGradient_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageGradient

//Value Computed by CMake
ITKImageGradient_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageGradient

//Value Computed by CMake
ITKImageGrid_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageGrid

//Value Computed by CMake
ITKImageGrid_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageGrid

//Value Computed by CMake
ITKImageIntensity_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageIntensity

//Value Computed by CMake
ITKImageIntensity_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageIntensity

//Value Computed by CMake
ITKImageLabel_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageLabel

//Value Computed by CMake
ITKImageLabel_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageLabel

//Value Computed by CMake
ITKImageNoise_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageNoise

//Value Computed by CMake
ITKImageNoise_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageNoise

//Value Computed by CMake
ITKImageSources_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageSources

//Value Computed by CMake
ITKImageSources_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageSources

//Value Computed by CMake
ITKImageStatistics_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/ImageStatistics

//Value Computed by CMake
ITKImageStatistics_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/ImageStatistics

//Value Computed by CMake
ITKIntegratedTest_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Nonunit/IntegratedTest

//Value Computed by CMake
ITKIntegratedTest_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Nonunit/IntegratedTest

//Value Computed by CMake
ITKJPEG_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/JPEG

//Value Computed by CMake
ITKJPEG_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/JPEG

//Value Computed by CMake
ITKKLMRegionGrowing_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/KLMRegionGrowing

//Dependencies for the target
ITKKLMRegionGrowing_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKKLMRegionGrowing_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/KLMRegionGrowing

//Value Computed by CMake
ITKKWSys_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/KWSys

//Value Computed by CMake
ITKKWSys_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/KWSys

//Value Computed by CMake
ITKLabelMap_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/LabelMap

//Dependencies for the target
ITKLabelMap_LIB_DEPENDS:STATIC=general;ITKStatistics;

//Value Computed by CMake
ITKLabelMap_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/LabelMap

//Value Computed by CMake
ITKLabelVoting_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/LabelVoting

//Value Computed by CMake
ITKLabelVoting_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/LabelVoting

//Value Computed by CMake
ITKLevelSets_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/LevelSets

//Value Computed by CMake
ITKLevelSets_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/LevelSets

//Value Computed by CMake
ITKLevelSetsv4_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/LevelSetsv4

//Value Computed by CMake
ITKLevelSetsv4_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/LevelSetsv4

//Value Computed by CMake
ITKMarkovRandomFieldsClassifiers_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/MarkovRandomFieldsClassifiers

//Value Computed by CMake
ITKMarkovRandomFieldsClassifiers_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/MarkovRandomFieldsClassifiers

//Value Computed by CMake
ITKMathematicalMorphology_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/MathematicalMorphology

//Value Computed by CMake
ITKMathematicalMorphology_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/MathematicalMorphology

//Value Computed by CMake
ITKMesh_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/Mesh

//Dependencies for the target
ITKMesh_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKMesh_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/Mesh

//Value Computed by CMake
ITKMetaIO_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/MetaIO

//Dependencies for the target
ITKMetaIO_LIB_DEPENDS:STATIC=general;itkzlib;

//Value Computed by CMake
ITKMetaIO_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/MetaIO

//Value Computed by CMake
ITKMetricsv4_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/Metricsv4

//Value Computed by CMake
ITKMetricsv4_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/Metricsv4

//Value Computed by CMake
ITKNIFTI_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/NIFTI

//Value Computed by CMake
ITKNIFTI_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/NIFTI

//Value Computed by CMake
ITKNarrowBand_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/NarrowBand

//Value Computed by CMake
ITKNarrowBand_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/NarrowBand

//Value Computed by CMake
ITKNetlib_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/Netlib

//Value Computed by CMake
ITKNetlib_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/Netlib

//Value Computed by CMake
ITKNeuralNetworks_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/NeuralNetworks

//Value Computed by CMake
ITKNeuralNetworks_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/NeuralNetworks

//Value Computed by CMake
ITKNrrdIO_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/NrrdIO

//Dependencies for the target
ITKNrrdIO_LIB_DEPENDS:STATIC=general;itkzlib;

//Value Computed by CMake
ITKNrrdIO_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/NrrdIO

//Value Computed by CMake
ITKOptimizers_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/Optimizers

//Dependencies for the target
ITKOptimizers_LIB_DEPENDS:STATIC=general;ITKStatistics;

//Value Computed by CMake
ITKOptimizers_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/Optimizers

//Value Computed by CMake
ITKOptimizersv4_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/Optimizersv4

//Dependencies for the target
ITKOptimizersv4_LIB_DEPENDS:STATIC=general;ITKOptimizers;

//Value Computed by CMake
ITKOptimizersv4_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/Optimizersv4

//Value Computed by CMake
ITKPDEDeformableRegistration_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/PDEDeformable

//Value Computed by CMake
ITKPDEDeformableRegistration_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/PDEDeformable

//Value Computed by CMake
ITKPNG_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/PNG

//Value Computed by CMake
ITKPNG_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/PNG

//Value Computed by CMake
ITKPath_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/Path

//Dependencies for the target
ITKPath_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKPath_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/Path

//Value Computed by CMake
ITKPolynomials_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/Polynomials

//Dependencies for the target
ITKPolynomials_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKPolynomials_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/Polynomials

//Value Computed by CMake
ITKQuadEdgeMeshFiltering_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/QuadEdgeMeshFiltering

//Value Computed by CMake
ITKQuadEdgeMeshFiltering_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/QuadEdgeMeshFiltering

//Value Computed by CMake
ITKQuadEdgeMesh_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/QuadEdgeMesh

//Dependencies for the target
ITKQuadEdgeMesh_LIB_DEPENDS:STATIC=general;ITKMesh;

//Value Computed by CMake
ITKQuadEdgeMesh_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/QuadEdgeMesh

//Value Computed by CMake
ITKRegionGrowing_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/RegionGrowing

//Value Computed by CMake
ITKRegionGrowing_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/RegionGrowing

//Value Computed by CMake
ITKRegistrationCommon_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/Common

//Value Computed by CMake
ITKRegistrationCommon_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/Common

//Value Computed by CMake
ITKRegistrationMethodsv4_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Registration/RegistrationMethodsv4

//Value Computed by CMake
ITKRegistrationMethodsv4_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Registration/RegistrationMethodsv4

//Value Computed by CMake
ITKSignedDistanceFunction_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/SignedDistanceFunction

//Value Computed by CMake
ITKSignedDistanceFunction_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/SignedDistanceFunction

//Value Computed by CMake
ITKSmoothing_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/Smoothing

//Value Computed by CMake
ITKSmoothing_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/Smoothing

//Value Computed by CMake
ITKSpatialFunction_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/SpatialFunction

//Value Computed by CMake
ITKSpatialFunction_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/SpatialFunction

//Value Computed by CMake
ITKSpatialObjects_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/SpatialObjects

//Dependencies for the target
ITKSpatialObjects_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;general;ITKMesh;general;ITKIOImageBase;

//Value Computed by CMake
ITKSpatialObjects_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/SpatialObjects

//Value Computed by CMake
ITKStatistics_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Numerics/Statistics

//Dependencies for the target
ITKStatistics_LIB_DEPENDS:STATIC=general;ITKCommon;general;itkNetlibSlatec;

//Value Computed by CMake
ITKStatistics_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Numerics/Statistics

//Value Computed by CMake
ITKTIFF_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/TIFF

//Value Computed by CMake
ITKTIFF_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/TIFF

//Value Computed by CMake
ITKTestKernel_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/TestKernel

//Value Computed by CMake
ITKTestKernel_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/TestKernel

//Value Computed by CMake
ITKThresholding_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Filtering/Thresholding

//Value Computed by CMake
ITKThresholding_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Filtering/Thresholding

//Value Computed by CMake
ITKTransform_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Core/Transform

//Value Computed by CMake
ITKTransform_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Core/Transform

//Enable compatibility with ITK3.x when possible.
ITKV3_COMPATIBILITY:BOOL=OFF

//Value Computed by CMake
ITKVNLInstantiation_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNLInstantiation

//Dependencies for the target
ITKVNLInstantiation_LIB_DEPENDS:STATIC=general;itkvnl_algo;general;itkvnl;general;itkv3p_netlib;

//Value Computed by CMake
ITKVNLInstantiation_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNLInstantiation

//Value Computed by CMake
ITKVNL_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL

//Value Computed by CMake
ITKVNL_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL

//Value Computed by CMake
ITKVTK_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Bridge/VTK

//Dependencies for the target
ITKVTK_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKVTK_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Bridge/VTK

//Value Computed by CMake
ITKVideoCore_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Video/Core

//Dependencies for the target
ITKVideoCore_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKVideoCore_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Video/Core

//Value Computed by CMake
ITKVideoFiltering_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Video/Filtering

//Value Computed by CMake
ITKVideoFiltering_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Video/Filtering

//Value Computed by CMake
ITKVideoIO_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Video/IO

//Dependencies for the target
ITKVideoIO_LIB_DEPENDS:STATIC=general;ITKVideoCore;general;ITKIOImageBase;

//Value Computed by CMake
ITKVideoIO_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Video/IO

//Value Computed by CMake
ITKVoronoi_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/Voronoi

//Value Computed by CMake
ITKVoronoi_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/Voronoi

//Value Computed by CMake
ITKVtkGlue_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Bridge/VtkGlue

//Dependencies for the target
ITKVtkGlue_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKVTK;general;vtkRenderingOpenGL;general;vtkImagingHybrid;general;vtkIOImage;general;vtkCommonDataModel;general;vtkCommonMath;general;vtkCommonCore;general;vtksys;general;vtkCommonMisc;general;vtkCommonSystem;general;vtkCommonTransforms;general;vtkCommonExecutionModel;general;vtkDICOMParser;general;vtkIOCore;general;/usr/lib/libz.dylib;general;vtkmetaio;general;vtkjpeg;general;vtkpng;general;vtktiff;general;vtkImagingCore;general;vtkRenderingCore;general;vtkCommonColor;general;vtkFiltersExtraction;general;vtkFiltersCore;general;vtkFiltersGeneral;general;vtkCommonComputationalGeometry;general;vtkFiltersStatistics;general;vtkImagingFourier;general;vtkalglib;general;vtkFiltersGeometry;general;vtkFiltersSources;general;vtkRenderingFreeType;general;vtkfreetype;general;vtkftgl;general;vtkInteractionStyle;general;vtkImagingSources;

//Value Computed by CMake
ITKVtkGlue_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Bridge/VtkGlue

//Value Computed by CMake
ITKWatersheds_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/Segmentation/Watersheds

//Dependencies for the target
ITKWatersheds_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKWatersheds_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/Segmentation/Watersheds

//Value Computed by CMake
ITKZLIB_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/ZLIB

//Value Computed by CMake
ITKZLIB_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/ZLIB

//Value Computed by CMake
ITK_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild

//Build the tests of module dependencies.
ITK_BUILD_ALL_MODULES_FOR_TESTS:BOOL=OFF

//Build the default ITK modules.
ITK_BUILD_DEFAULT_MODULES:BOOL=ON

//Provide here the size of your RAM Memory in GigaBytes
ITK_COMPUTER_MEMORY_SIZE:STRING=1

//Run cppcheck for static code analysis
ITK_CPPCHECK_TEST:BOOL=OFF

//Doxygen will generate Microsoft HTML help
ITK_DOXYGEN_CHM:BOOL=OFF

//Doxygen will generate additional index files for Xcode 3
ITK_DOXYGEN_DOCSET:BOOL=OFF

//Doxygen will generate Eclipse help plugin
ITK_DOXYGEN_ECLIPSEHELP:BOOL=OFF

//Doxygen will generate HTML Output
ITK_DOXYGEN_HTML:BOOL=ON

//Doxygen will generate LaTeX output
ITK_DOXYGEN_LATEX:BOOL=OFF

//Doxygen will generate Qt Compressed Help
ITK_DOXYGEN_QHP:BOOL=OFF

//Doxygen will generate RTF output optimized for Word 97
ITK_DOXYGEN_RTF:BOOL=OFF

//Doxygen will generate XML output
ITK_DOXYGEN_XML:BOOL=OFF

//Support run-time loading of shared libraries
ITK_DYNAMIC_LOADING:BOOL=ON

//Do not download source code or data from the network
ITK_FORBID_DOWNLOADS:BOOL=OFF

//Remove all legacy code completely.
ITK_LEGACY_REMOVE:BOOL=OFF

//Silence all legacy code messages.
ITK_LEGACY_SILENT:BOOL=OFF

//Value Computed by CMake
ITK_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1

//When ON, ITK will use 64 bits integers to index pixels. This
// is needed for managing images larger than 4Gb in some platforms.
ITK_USE_64BITS_IDS:BOOL=ON

//Download and use BrainWeb data for advanced testing
ITK_USE_BRAINWEB_DATA:BOOL=OFF

//Turn on concept checking to give helpful errors at compile time
// if a type cannot be used as a template parameter.
ITK_USE_CONCEPT_CHECKING:BOOL=ON

//Use double precision fftw if found
ITK_USE_FFTWD:BOOL=OFF

//Use single precision fftw if found
ITK_USE_FFTWF:BOOL=OFF

//Use single precision for origin/spacing/directions in itk::Image
ITK_USE_FLOAT_SPACE_PRECISION:BOOL=OFF

//GPU acceleration via OpenCL
ITK_USE_GPU:BOOL=OFF

//Enable the use of KWStyle for checking coding style.
ITK_USE_KWSTYLE:BOOL=OFF

//Turn on Strict concept checking to give more stringent errors
// at compile time if a type cannot be used as a template parameter.
ITK_USE_STRICT_CONCEPT_CHECKING:BOOL=OFF

//Use an outside build of double-conversion
ITK_USE_SYSTEM_DOUBLECONVERSION:BOOL=OFF

//Use system-installed expat
ITK_USE_SYSTEM_EXPAT:BOOL=OFF

//Use an installed version of fftw
ITK_USE_SYSTEM_FFTW:BOOL=OFF

//Use an outside build of GDCM.
ITK_USE_SYSTEM_GDCM:BOOL=OFF

//Use an outside build of HDF5.
ITK_USE_SYSTEM_HDF5:BOOL=OFF

//Use an outside build of JPEG.
ITK_USE_SYSTEM_JPEG:BOOL=OFF

//Use the system's libraries by default.
//\nIf this is not set during the initial configuration, it will
// have no effect.
ITK_USE_SYSTEM_LIBRARIES:BOOL=OFF

//Use system-installed png
ITK_USE_SYSTEM_PNG:BOOL=OFF

//Use system SZIP. If OFF, SZIP is built as an external project.
ITK_USE_SYSTEM_SZIP:BOOL=OFF

//Use system-installed tiff
ITK_USE_SYSTEM_TIFF:BOOL=OFF

//Use an outside build of VXL.
ITK_USE_SYSTEM_VXL:BOOL=OFF

//Use system ZLIB. If OFF, ZLIB is built as an external project.
ITK_USE_SYSTEM_ZLIB:BOOL=OFF

//Build Java support (Currently not supported)
ITK_WRAP_JAVA:BOOL=OFF

//Build Perl support (Currently not supported)
ITK_WRAP_PERL:BOOL=OFF

//Build Python support
ITK_WRAP_PYTHON:BOOL=OFF

//Build Ruby support (Currently not supported)
ITK_WRAP_RUBY:BOOL=OFF

//Build Tcl support (Currently not supported)
ITK_WRAP_TCL:BOOL=OFF

//Dependencies for the target
ITKgiftiio_LIB_DEPENDS:STATIC=general;ITKEXPAT;general;ITKznz;general;ITKniftiio;

//Dependencies for the target
ITKniftiio_LIB_DEPENDS:STATIC=general;ITKznz;general;-lm;

//Value Computed by CMake
ITKv4ImageRegistration_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/RegistrationITKv4

//Value Computed by CMake
ITKv4ImageRegistration_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/RegistrationITKv4

//Dependencies for the target
ITKznz_LIB_DEPENDS:STATIC=general;itkzlib;

//Value Computed by CMake
ImageExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/DataRepresentation/Image

//Value Computed by CMake
ImageExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/DataRepresentation/Image

//Value Computed by CMake
ImageSegmentation_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/Segmentation

//Value Computed by CMake
ImageSegmentation_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/Segmentation

//Value Computed by CMake
IteratorExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/Iterators

//Value Computed by CMake
IteratorExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/Iterators

//Path to the KWStyle executable
KWSTYLE_EXECUTABLE:FILEPATH=KWSTYLE_EXECUTABLE-NOTFOUND

//The number of headers in a HeaderTest code.
MAXIMUM_NUMBER_OF_HEADERS:STRING=35

//Value Computed by CMake
MeshExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/DataRepresentation/Mesh

//Value Computed by CMake
MeshExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/DataRepresentation/Mesh

//AnalyzeObjectMapIO plugin for ITK. From Insight Journal article
// with handle: http://hdl.handle.net/1926/593
Module_AnalyzeObjectMapIO:BOOL=OFF

//This module contains wrapper code to convert ITK Image's to
//\n  NumPy array's and back.  For example:
//\n
//\n    import itk
//\n    ImageType = itk.Image[itk.F, 2]
//\n    image = ImageType.New()
//\n    array = itk.PyBuffer[ImageType].GetArrayFromImage(image)
//\n    image = itk.PyBuffer[ImageType].GetImageFromArray(array)
//\n
//\n  See http://insight-journal.org/browse/publication/85
//\n      http://hdl.handle.net/1926/188
Module_BridgeNumPy:BOOL=OFF

//This module contains a filter to compute higher order
//\n  accurate numerical derivatives and gradients from an input
// scalar image.
//\n  field from a displacement field image.
//\n  Higher Order Accurate Derivative and Gradient Calculation
// in ITK
//\n  http://www.insight-journal.org/browse/publication/775
//\n  http://hdl.handle.net/10380/3231
Module_HigherOrderAccurateGradient:BOOL=OFF

//FDFImageIO plugin for ITK. Authors Gleen Pierce/Nick Tustison/Kent
// Williams
Module_IOFDF:BOOL=OFF

//This module contains classes for reading and writing QuadEdgeMeshes
// using
//\n  the STL (STereoLithography)file format. http://hdl.handle.net/10380/3452
Module_IOSTL:BOOL=OFF

//The modules contains classes for reading spatial transform from
// DICOM
//\n  files. See http://www.insight-journal.org/browse/publication/923
//\n             http://hdl.handle.net/10380/3468
Module_IOTransformDCMTK:BOOL=OFF

//Request building ITKDCMTK
Module_ITKDCMTK:BOOL=OFF

//Request building ITKDeprecated
Module_ITKDeprecated:BOOL=OFF

//Request building ITKIODCMTK
Module_ITKIODCMTK:BOOL=OFF

//Request building ITKIOMINC
Module_ITKIOMINC:BOOL=OFF

//Request building ITKIOPhilipsREC
Module_ITKIOPhilipsREC:BOOL=OFF

//Request building ITKLevelSetsv4Visualization
Module_ITKLevelSetsv4Visualization:BOOL=OFF

//Request building ITKMINC
Module_ITKMINC:BOOL=OFF

//Request building ITKOpenJPEG
Module_ITKOpenJPEG:BOOL=OFF

//Request building ITKReview
Module_ITKReview:BOOL=OFF

//Request building ITKV3Compatibility
Module_ITKV3Compatibility:BOOL=OFF

//Request building ITKVideoBridgeOpenCV
Module_ITKVideoBridgeOpenCV:BOOL=OFF

//Request building ITKVideoBridgeVXL
Module_ITKVideoBridgeVXL:BOOL=OFF

//Request building ITKVtkGlue
Module_ITKVtkGlue:BOOL=ON

//Classes performing morphology efficiently on label images.
//\n  Label collisions are consistently handled, and
//\n  operations are efficient (approximately constant time wrt
//\n  structuring element size). Only circular/spherical/hyperspherical
//\n  structuring elements are supported.
//\n  http://www.insight-journal.org/browse/publication/228
//\n  http://hdl.handle.net/10380/3399
Module_LabelErodeDilate:BOOL=OFF

//Framework for determining the sizes of lesions in medical images.
Module_LesionSizingToolkit:BOOL=OFF

//MGHIO ImageIO plugin for ITK
Module_MGHIO:BOOL=OFF

//http://www.insight-journal.org/browse/publication/213
//\n
Module_MinimalPathExtraction:BOOL=OFF

//Classes performing morphology using parabolic functions.
//\n  Fast distance transforms and binary erosions/dilations/openings/closings
//\n  by spheres, sharpenings and grayscale operations.
//\n  http://www.insight-journal.org/browse/publication/228
//\n  http://hdl.handle.net/1926/1370
Module_ParabolicMorphology:BOOL=OFF

//SCIFIO (Bioformats) ImageIO plugin for ITK
Module_SCIFIO:BOOL=OFF

//A class to perform automatic skull-stripping for neuroimage analysis.
Module_SkullStrip:BOOL=OFF

//GPU and CPU Young & Van Vliet Recursive Gaussian Smoothing Filter:
// http://hdl.handle.net/10380/3425
Module_SmoothingRecursiveYvvGaussianFilter:BOOL=OFF

//This module builds the examples found at http://itk.org/ITKExamples/
Module_SphinxExamples:BOOL=OFF

//This module contains filter called
//\nitk::SplitComponentsImageFilter.  This filter generates component
// images from an
//\nitk::Image of, for example, itk::Vector, itk::CovariantVector,
// or
//\nitk::SymmetricSecondRankTensor. http://hdl.handle.net/10380/3230
Module_SplitComponents:BOOL=OFF

//Triangle and edge based QuadEdgeMesh subdivision filters.
//\n
//\nSee the following Insight Journal's publication:
//\n
//\n  Wanlin Zhu, "Triangle Mesh Subdivision"
//\n  http://www.insight-journal.org/browse/publication/831
//\n  http://hdl.handle.net/10380/3307
Module_SubdivisionQuadEdgeMeshFilter:BOOL=OFF

//A module to perform variational image registration. http://hdl.handle.net/10380/3460
Module_VariationalRegistration:BOOL=OFF

//A collection of examples that illustrate how to use ITK.
Module_WikiExamples:BOOL=OFF

//Value Computed by CMake
NIFTI_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/NIFTI/src/nifti

//Value Computed by CMake
NIFTI_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/NIFTI/src/nifti

//Value Computed by CMake
NumericsExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/Numerics

//Value Computed by CMake
NumericsExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/Numerics

//Path to a program.
PERL_EXECUTABLE:FILEPATH=/usr/bin/perl

//Path to a program.
PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python

//Value Computed by CMake
PathExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/DataRepresentation/Path

//Value Computed by CMake
PathExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/DataRepresentation/Path

//Value Computed by CMake
SpatialObjectsExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/SpatialObjects

//Value Computed by CMake
SpatialObjectsExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/SpatialObjects

//Value Computed by CMake
StatisticsExamples_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Examples/Statistics

//Value Computed by CMake
StatisticsExamples_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Examples/Statistics

//Use HIDDEN visibility support if available.
USE_COMPILER_HIDDEN_VISIBILITY:BOOL=ON

//Enable C++0x standard extensions
VCL_INCLUDE_CXX_0X:BOOL=OFF

//Whether vnl_vector/vnl_matrix accessor methods check index bounds.
VNL_CONFIG_CHECK_BOUNDS:BOOL=ON

//Enable Streaming SIMD Extensions 2 optimisations (hardware dependant).
// Currently broken. For use by VNL developers only.
VNL_CONFIG_ENABLE_SSE2:BOOL=OFF

//Enable Streaming SIMD Extensions 2 implementation of rounding
// (hardware dependant).
VNL_CONFIG_ENABLE_SSE2_ROUNDING:BOOL=ON

//Whether backward-compatibility methods are provided by vnl.
VNL_CONFIG_LEGACY_METHODS:BOOL=OFF

//Whether thread-safe vnl implementations are used.
VNL_CONFIG_THREAD_SAFE:BOOL=ON

//v3p include files
VTHREEP_INCLUDE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/v3p

//v3p include files
VTHREEP_INSTALL_INCLUDE_DIR:STATIC=/usr/local/include/vxl/v3p

//The directory containing a CMake configuration file for VTK.
VTK_DIR:PATH=/Users/simpsonl/Software/VTKBuild

//Re-run the configuration tests?
VXL_UPDATE_CONFIGURATION:BOOL=OFF

//Path to a file.
X11_ICE_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_ICE_LIB:FILEPATH=/opt/X11/lib/libICE.dylib

//Path to a file.
X11_SM_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_SM_LIB:FILEPATH=/opt/X11/lib/libSM.dylib

//Path to a file.
X11_X11_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_X11_LIB:FILEPATH=/opt/X11/lib/libX11.dylib

//Path to a file.
X11_XRes_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_XRes_LIB:FILEPATH=/opt/X11/lib/libXRes.dylib

//Path to a file.
X11_XShm_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a file.
X11_XSync_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a file.
X11_XTest_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_XTest_LIB:FILEPATH=/opt/X11/lib/libXtst.dylib

//Path to a file.
X11_Xaccessrules_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a file.
X11_Xaccessstr_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a file.
X11_Xau_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xau_LIB:FILEPATH=/opt/X11/lib/libXau.dylib

//Path to a file.
X11_Xcomposite_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xcomposite_LIB:FILEPATH=/opt/X11/lib/libXcomposite.dylib

//Path to a file.
X11_Xcursor_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xcursor_LIB:FILEPATH=/opt/X11/lib/libXcursor.dylib

//Path to a file.
X11_Xdamage_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xdamage_LIB:FILEPATH=/opt/X11/lib/libXdamage.dylib

//Path to a file.
X11_Xdmcp_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xdmcp_LIB:FILEPATH=/opt/X11/lib/libXdmcp.dylib

//Path to a library.
X11_Xext_LIB:FILEPATH=/opt/X11/lib/libXext.dylib

//Path to a file.
X11_Xfixes_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xfixes_LIB:FILEPATH=/opt/X11/lib/libXfixes.dylib

//Path to a file.
X11_Xft_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xft_LIB:FILEPATH=/opt/X11/lib/libXft.dylib

//Path to a file.
X11_Xi_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xi_LIB:FILEPATH=/opt/X11/lib/libXi.dylib

//Path to a file.
X11_Xinerama_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xinerama_LIB:FILEPATH=/opt/X11/lib/libXinerama.dylib

//Path to a file.
X11_Xinput_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xinput_LIB:FILEPATH=/opt/X11/lib/libXi.dylib

//Path to a file.
X11_Xkb_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a file.
X11_Xkbfile_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xkbfile_LIB:FILEPATH=/opt/X11/lib/libxkbfile.dylib

//Path to a file.
X11_Xkblib_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a file.
X11_Xlib_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a file.
X11_Xmu_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xmu_LIB:FILEPATH=/opt/X11/lib/libXmu.dylib

//Path to a file.
X11_Xpm_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xpm_LIB:FILEPATH=/opt/X11/lib/libXpm.dylib

//Path to a file.
X11_Xrandr_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xrandr_LIB:FILEPATH=/opt/X11/lib/libXrandr.dylib

//Path to a file.
X11_Xrender_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xrender_LIB:FILEPATH=/opt/X11/lib/libXrender.dylib

//Path to a file.
X11_Xscreensaver_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xscreensaver_LIB:FILEPATH=/opt/X11/lib/libXss.dylib

//Path to a file.
X11_Xshape_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a file.
X11_Xt_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xt_LIB:FILEPATH=/opt/X11/lib/libXt.dylib

//Path to a file.
X11_Xutil_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a file.
X11_Xv_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a library.
X11_Xv_LIB:FILEPATH=/opt/X11/lib/libXv.dylib

//Path to a library.
X11_Xxf86misc_LIB:FILEPATH=/opt/X11/lib/libXxf86misc.dylib

//Path to a library.
X11_Xxf86vm_LIB:FILEPATH=/opt/X11/lib/libXxf86vm.dylib

//Path to a file.
X11_dpms_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a file.
X11_xf86misc_INCLUDE_PATH:PATH=/opt/X11/include

//Path to a file.
X11_xf86vmode_INCLUDE_PATH:PATH=/opt/X11/include

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//Value Computed by CMake
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//Value Computed by CMake
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//Value Computed by CMake
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lsqr_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL/src/vxl/v3p/netlib/linalg

//Value Computed by CMake
lsqr_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/v3p/netlib/linalg

//Value Computed by CMake
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//Value Computed by CMake
netlib_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/v3p/netlib

//Value Computed by CMake
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//Value Computed by CMake
vcl_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/vcl

//Value Computed by CMake
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//Value Computed by CMake
vnl_algo_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/core/vnl/algo

//Value Computed by CMake
vthreep_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL/src/vxl/v3p

//Value Computed by CMake
vthreep_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/v3p

//Value Computed by CMake
vxl_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL/src/vxl

//Value Computed by CMake
vxl_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl

//Value Computed by CMake
vxl_config_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL/src/vxl/config/cmake/config

//Value Computed by CMake
vxl_config_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/config/cmake/config

//Value Computed by CMake
vxlcore_BINARY_DIR:STATIC=/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/VNL/src/vxl/core

//Value Computed by CMake
vxlcore_SOURCE_DIR:STATIC=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/VNL/src/vxl/core


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FIND_PACKAGE_MESSAGE_DETAILS_EXPAT:INTERNAL=[ITKEXPAT][/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/Expat/src/expat;/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/Expat/src/expat][v()]
//Details about finding Perl
FIND_PACKAGE_MESSAGE_DETAILS_Perl:INTERNAL=[/usr/bin/perl][v5.16.2()]
//Details about finding PythonInterp
FIND_PACKAGE_MESSAGE_DETAILS_PythonInterp:INTERNAL=[/usr/bin/python][v2.7.5()]
//Details about finding Threads
FIND_PACKAGE_MESSAGE_DETAILS_Threads:INTERNAL=[TRUE][v()]
//Details about finding X11
FIND_PACKAGE_MESSAGE_DETAILS_X11:INTERNAL=[/opt/X11/lib/libX11.dylib][/opt/X11/include]
//Details about finding ZLIB
FIND_PACKAGE_MESSAGE_DETAILS_ZLIB:INTERNAL=[itkzlib][/Users/simpsonl/Software/ITKBuild/Modules/ThirdParty/ZLIB/src;/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/ZLIB/src][v()]
//Preserve compatibility with GDCM 2.0 release
GDCMV2_0_COMPATIBILITY:INTERNAL=ON
//When set to ON, gdcm::Trace macros will dumps message (override
// NDEBUG settings)
GDCM_ALWAYS_TRACE_MACRO:INTERNAL=OFF
GDCM_CMAKE_DIR:INTERNAL=/Users/simpsonl/Software/ITK-4.8.1/Modules/ThirdParty/GDCM/src/gdcm/CMake
//Test GDCM_CXX_HAS_FUNCTION
GDCM_CXX_HAS_FUNCTION:INTERNAL=1
GDCM_DEBUG_POSTFIX:INTERNAL=
//Have includes sys/time.h;byteswap.h
GDCM_HAVE_BYTESWAP_FILE_H:INTERNAL=
//Have function gettimeofday
GDCM_HAVE_GETTIMEOFDAY:INTERNAL=1
//Have include inttypes.h
GDCM_HAVE_INTTYPES_H:INTERNAL=1
//Have include langinfo.h
GDCM_HAVE_LANGINFO_H:INTERNAL=1
//Have symbol nl_langinfo
GDCM_HAVE_NL_LANGINFO:INTERNAL=1
//Have include pthread.h
GDCM_HAVE_PTHREAD_H:INTERNAL=1
//Have include rpc.h
GDCM_HAVE_RPC_H:INTERNAL=
//Have symbol snprintf
GDCM_HAVE_SNPRINTF:INTERNAL=1
//Have include stdint.h
GDCM_HAVE_STDINT_H:INTERNAL=1
//Have symbol strcasecmp
GDCM_HAVE_STRCASECMP:INTERNAL=1
//Have symbol strncasecmp
GDCM_HAVE_STRNCASECMP:INTERNAL=1
//Have function strptime
GDCM_HAVE_STRPTIME:INTERNAL=1
//Have include ;sys/time.h
GDCM_HAVE_SYS_TIME_H:INTERNAL=1
//Test GDCM_HAVE_WCHAR_IFSTREAM
GDCM_HAVE_WCHAR_IFSTREAM:INTERNAL=
//Have includes sys/time.h;winsock.h
GDCM_HAVE_WINSOCK_H:INTERNAL=
//Have function _snprintf
GDCM_HAVE__SNPRINTF:INTERNAL=
//Have function _stricmp
GDCM_HAVE__STRICMP:INTERNAL=
//Have function _strnicmp
GDCM_HAVE__STRNICMP:INTERNAL=
GDCM_INSTALL_PACKAGE_DIR:INTERNAL=lib/gdcm-2.5
//Remove all legacy code completely.
GDCM_LEGACY_REMOVE:INTERNAL=OFF
//Silence all legacy code messages.
GDCM_LEGACY_SILENT:INTERNAL=OFF
//Handle broken DICOM
GDCM_SUPPORT_BROKEN_IMPLEMENTATION:INTERNAL=ON
//Path to a valid temp directory
GDCM_TEMP_DIRECTORY:INTERNAL=/Users/simpsonl/Software/ITKBuild/Testing/Temporary
GDCM_USE_JPEGLS:INTERNAL=ON
//Use kakadu lib, only turn it on if you know what you are doing.
GDCM_USE_KAKADU:INTERNAL=OFF
//Use openjpeg v2 version (advanced users only).
GDCM_USE_OPENJPEG_V2:INTERNAL=ON
//Use pvrg lib, only turn it on if you know what you are doing.
GDCM_USE_PVRG:INTERNAL=OFF
//Use system charls
GDCM_USE_SYSTEM_CHARLS:INTERNAL=OFF
//Use system expat
GDCM_USE_SYSTEM_EXPAT:INTERNAL=ON
//Use system json
GDCM_USE_SYSTEM_JSON:INTERNAL=OFF
//Use LibXml2
GDCM_USE_SYSTEM_LIBXML2:INTERNAL=OFF
//Use system ljpeg (ijg lib)
GDCM_USE_SYSTEM_LJPEG:INTERNAL=OFF
//Use system openjpeg
GDCM_USE_SYSTEM_OPENJPEG:INTERNAL=OFF
//Use system OpenSSL
GDCM_USE_SYSTEM_OPENSSL:INTERNAL=OFF
//Use system papyrus3
GDCM_USE_SYSTEM_PAPYRUS3:INTERNAL=OFF
//Use system podofo (pdf)
GDCM_USE_SYSTEM_PODOFO:INTERNAL=OFF
//Use system poppler (pdf)
GDCM_USE_SYSTEM_POPPLER:INTERNAL=OFF
//Use system socket++
GDCM_USE_SYSTEM_SOCKETXX:INTERNAL=OFF
//Use system uuid
GDCM_USE_SYSTEM_UUID:INTERNAL=OFF
//Use system zlib
GDCM_USE_SYSTEM_ZLIB:INTERNAL=ON
//wxWidgets bridge ?
GDCM_USE_WXWIDGETS:INTERNAL=OFF
//Do not change
GDCM_WRITE_ODD_LENGTH:INTERNAL=OFF
//Result of TRY_COMPILE
GETTIMEOFDAY_GIVES_TZ:INTERNAL=TRUE
//Other test 
H5_CXX_HAVE_OFFSETOF:INTERNAL=1
//Other test 
H5_DEV_T_IS_SCALAR:INTERNAL=1
//Checking IF overflows normally converting floating-point to integer
// values
H5_FP_TO_INTEGER_OVERFLOW_WORKS:INTERNAL=1
//Result of TRY_COMPILE
H5_FP_TO_INTEGER_OVERFLOW_WORKS_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_FP_TO_INTEGER_OVERFLOW_WORKS_RUN:INTERNAL=0
//Checking IF accurately roundup converting floating-point to unsigned
// long long values
H5_FP_TO_ULLONG_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
H5_FP_TO_ULLONG_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_FP_TO_ULLONG_ACCURATE_RUN:INTERNAL=0
//Checking IF right maximum converting floating-point to unsigned
// long long values
H5_FP_TO_ULLONG_RIGHT_MAXIMUM:INTERNAL=
//Result of TRY_COMPILE
H5_FP_TO_ULLONG_RIGHT_MAXIMUM_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_FP_TO_ULLONG_RIGHT_MAXIMUM_RUN:INTERNAL=1
//Other test 
H5_GETTIMEOFDAY_GIVES_TZ:INTERNAL=1
//Have function alarm
H5_HAVE_ALARM:INTERNAL=1
//Other test 
H5_HAVE_ATTRIBUTE:INTERNAL=1
//Other test 
H5_HAVE_C99_DESIGNATED_INITIALIZER:INTERNAL=1
//Other test 
H5_HAVE_C99_FUNC:INTERNAL=1
//Have symbol tzname
H5_HAVE_DECL_TZNAME:INTERNAL=1
//Have function difftime
H5_HAVE_DIFFTIME:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h;memory.h;dlfcn.h
H5_HAVE_DLFCN_H:INTERNAL=1
//Have includes pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h;memory.h;dlfcn.h;features.h
H5_HAVE_FEATURES_H:INTERNAL=
//Have function fork
H5_HAVE_FORK:INTERNAL=1
//Have function frexpf
H5_HAVE_FREXPF:INTERNAL=1
//Have function frexpl
H5_HAVE_FREXPL:INTERNAL=1
//Have function fseeko
H5_HAVE_FSEEKO:INTERNAL=1
//Have function fseeko64
H5_HAVE_FSEEKO64:INTERNAL=
//Have function fstat64
H5_HAVE_FSTAT64:INTERNAL=1
//Have function ftello
H5_HAVE_FTELLO:INTERNAL=1
//Have function ftello64
H5_HAVE_FTELLO64:INTERNAL=
//Other test 
H5_HAVE_FUNCTION:INTERNAL=1
//Have function gethostname
H5_HAVE_GETHOSTNAME:INTERNAL=1
//Have function getpwuid
H5_HAVE_GETPWUID:INTERNAL=1
//Have function getrusage
H5_HAVE_GETRUSAGE:INTERNAL=1
//H5_HAVE_GETTIMEOFDAY
H5_HAVE_GETTIMEOFDAY:INTERNAL=1
//Have includes ;globus/common.h
H5_HAVE_GLOBUS_COMMON_H:INTERNAL=
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h;memory.h;dlfcn.h;inttypes.h
H5_HAVE_INTTYPES_H:INTERNAL=1
//Have function ioctl
H5_HAVE_IOCTL:INTERNAL=1
//Have includes ;io.h
H5_HAVE_IO_H:INTERNAL=
//Have library m;
H5_HAVE_LIBM:INTERNAL=1
//Have library socket;m
H5_HAVE_LIBSOCKET:INTERNAL=
//Have library ucb;m
H5_HAVE_LIBUCB:INTERNAL=
//Have library ws2_32;m
H5_HAVE_LIBWS2_32:INTERNAL=
//Have library wsock32;m
H5_HAVE_LIBWSOCK32:INTERNAL=
//Have function longjmp
H5_HAVE_LONGJMP:INTERNAL=1
//Have function lstat
H5_HAVE_LSTAT:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h;memory.h
H5_HAVE_MEMORY_H:INTERNAL=1
//Have includes ;mfhdf.h
H5_HAVE_MFHDF_H:INTERNAL=
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h;memory.h;dlfcn.h;inttypes.h;netinet/in.h
H5_HAVE_NETINET_IN_H:INTERNAL=1
//Other test 
H5_HAVE_OFF64_T:INTERNAL=
//Have includes ;pdb.h
H5_HAVE_PDB_H:INTERNAL=
//Have include ;pthread.h
H5_HAVE_PTHREAD_H:INTERNAL=1
//Have function random
H5_HAVE_RANDOM:INTERNAL=1
//Have function rand_r
H5_HAVE_RAND_R:INTERNAL=1
//Have function setjmp
H5_HAVE_SETJMP:INTERNAL=1
//Have include pthread.h;setjmp.h
H5_HAVE_SETJMP_H:INTERNAL=1
//Have function setsysinfo
H5_HAVE_SETSYSINFO:INTERNAL=
//Have function sigaction
H5_HAVE_SIGACTION:INTERNAL=1
//Have function siglongjmp
H5_HAVE_SIGLONGJMP:INTERNAL=1
//Have function signal
H5_HAVE_SIGNAL:INTERNAL=1
//Have function sigprocmask
H5_HAVE_SIGPROCMASK:INTERNAL=1
//Have function sigsetjmp
H5_HAVE_SIGSETJMP:INTERNAL=1
//Have function snprintf
H5_HAVE_SNPRINTF:INTERNAL=1
//Other test 
H5_HAVE_SOCKLEN_T:INTERNAL=1
//Have function srandom
H5_HAVE_SRANDOM:INTERNAL=1
//Have includes pthread.h;setjmp.h;srbclient.h
H5_HAVE_SRBCLIENT_H:INTERNAL=
//Have function stat64
H5_HAVE_STAT64:INTERNAL=1
//Other test 
H5_HAVE_STAT_ST_BLOCKS:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h
H5_HAVE_STDDEF_H:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h
H5_HAVE_STDINT_H:INTERNAL=1
//Have include stdint.h
H5_HAVE_STDINT_H_CXX:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h
H5_HAVE_STDLIB_H:INTERNAL=1
//Have function strdup
H5_HAVE_STRDUP:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h
H5_HAVE_STRINGS_H:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h
H5_HAVE_STRING_H:INTERNAL=1
//Other test 
H5_HAVE_STRUCT_TIMEZONE:INTERNAL=1
//Other test 
H5_HAVE_STRUCT_TM_TM_ZONE:INTERNAL=1
//Have function symlink
H5_HAVE_SYMLINK:INTERNAL=1
//Have function system
H5_HAVE_SYSTEM:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h
H5_HAVE_SYS_IOCTL_H:INTERNAL=1
//Have includes pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/proc.h
H5_HAVE_SYS_PROC_H:INTERNAL=
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h
H5_HAVE_SYS_RESOURCE_H:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h
H5_HAVE_SYS_SOCKET_H:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h
H5_HAVE_SYS_STAT_H:INTERNAL=1
H5_HAVE_SYS_SYSINFO_H:INTERNAL=
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h
H5_HAVE_SYS_TIMEB_H:INTERNAL=1
//H5_HAVE_SYS_TIME_GETTIMEOFDAY
H5_HAVE_SYS_TIME_GETTIMEOFDAY:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h
H5_HAVE_SYS_TIME_H:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h
H5_HAVE_SYS_TYPES_H:INTERNAL=1
//Other test 
H5_HAVE_TIMEZONE:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h
H5_HAVE_TIME_H:INTERNAL=1
//Have symbol TIOCGETD
H5_HAVE_TIOCGETD:INTERNAL=1
//Have symbol TIOCGWINSZ
H5_HAVE_TIOCGWINSZ:INTERNAL=1
//Other test 
H5_HAVE_TM_GMTOFF:INTERNAL=1
//Other test 
H5_HAVE_TM_ZONE:INTERNAL=1
//Have include pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h
H5_HAVE_UNISTD_H:INTERNAL=1
//Have function vasprintf
H5_HAVE_VASPRINTF:INTERNAL=1
//Have function vsnprintf
H5_HAVE_VSNPRINTF:INTERNAL=1
//Have function waitpid
H5_HAVE_WAITPID:INTERNAL=1
//Have includes pthread.h;setjmp.h;stddef.h;stdint.h;string.h;strings.h;sys/ioctl.h;sys/resource.h;sys/socket.h;sys/stat.h;sys/time.h;time.h;sys/timeb.h;sys/types.h;unistd.h;stdlib.h;memory.h;dlfcn.h;inttypes.h;netinet/in.h;winsock2.h
H5_HAVE_WINSOCK_H:INTERNAL=
//Other test 
H5_INLINE_TEST___inline:INTERNAL=1
//Other test 
H5_INLINE_TEST___inline__:INTERNAL=1
//Other test 
H5_INLINE_TEST_inline:INTERNAL=1
//checking IF accurately converting from integers to long double
H5_INTEGER_TO_LDOUBLE_ACCURATE:INTERNAL=1
//checking IF converting from long double to integers is accurate
H5_LDOUBLE_TO_INTEGER_ACCURATE:INTERNAL=1
//Checking IF converting from long double to integers works
H5_LDOUBLE_TO_INTEGER_WORKS:INTERNAL=1
//Result of TRY_COMPILE
H5_LDOUBLE_TO_INTEGER_WORKS_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LDOUBLE_TO_INTEGER_WORKS_RUN:INTERNAL=0
//Checking IF correctly converting long double to (unsigned) long
// long values
H5_LDOUBLE_TO_LLONG_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
H5_LDOUBLE_TO_LLONG_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LDOUBLE_TO_LLONG_ACCURATE_RUN:INTERNAL=0
//Checking IF correctly converting long double to unsigned int
// values
H5_LDOUBLE_TO_UINT_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
H5_LDOUBLE_TO_UINT_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LDOUBLE_TO_UINT_ACCURATE_RUN:INTERNAL=0
//Checking IF compiling long long to floating-point typecasts work
H5_LLONG_TO_FP_CAST_WORKS:INTERNAL=1
//Checking IF correctly converting (unsigned) long long to long
// double values
H5_LLONG_TO_LDOUBLE_CORRECT:INTERNAL=1
//Result of TRY_COMPILE
H5_LLONG_TO_LDOUBLE_CORRECT_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LLONG_TO_LDOUBLE_CORRECT_RUN:INTERNAL=0
//Other test 
H5_LONE_COLON:INTERNAL=
//Checking IF alignment restrictions are strictly enforced
H5_NO_ALIGNMENT_RESTRICTIONS:INTERNAL=1
//Result of TRY_COMPILE
H5_NO_ALIGNMENT_RESTRICTIONS_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_NO_ALIGNMENT_RESTRICTIONS_RUN:INTERNAL=0
//Width for printf for type `long long' or `__int64', us. `ll
H5_PRINTF_LL_WIDTH:INTERNAL="ll"
//CHECK_TYPE_SIZE: sizeof(char)
H5_SIZEOF_CHAR:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(double)
H5_SIZEOF_DOUBLE:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(float)
H5_SIZEOF_FLOAT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int)
H5_SIZEOF_INT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int16_t)
H5_SIZEOF_INT16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(int32_t)
H5_SIZEOF_INT32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int64_t)
H5_SIZEOF_INT64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(int8_t)
H5_SIZEOF_INT8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int_fast16_t)
H5_SIZEOF_INT_FAST16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(int_fast32_t)
H5_SIZEOF_INT_FAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int_fast64_t)
H5_SIZEOF_INT_FAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(int_fast8_t)
H5_SIZEOF_INT_FAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int_least16_t)
H5_SIZEOF_INT_LEAST16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(int_least32_t)
H5_SIZEOF_INT_LEAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int_least64_t)
H5_SIZEOF_INT_LEAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(int_least8_t)
H5_SIZEOF_INT_LEAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(long double)
H5_SIZEOF_LONG_DOUBLE:INTERNAL=16
//CHECK_TYPE_SIZE: sizeof(long long)
H5_SIZEOF_LONG_LONG:INTERNAL=8
//SizeOf for off64_t
H5_SIZEOF_OFF64_T:INTERNAL=0
//CHECK_TYPE_SIZE: sizeof(off_t)
H5_SIZEOF_OFF_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(short)
H5_SIZEOF_SHORT:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(uint16_t)
H5_SIZEOF_UINT16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(uint32_t)
H5_SIZEOF_UINT32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint64_t)
H5_SIZEOF_UINT64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(uint8_t)
H5_SIZEOF_UINT8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(uint_fast16_t)
H5_SIZEOF_UINT_FAST16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(uint_fast32_t)
H5_SIZEOF_UINT_FAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint_fast64_t)
H5_SIZEOF_UINT_FAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(uint_fast8_t)
H5_SIZEOF_UINT_FAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(uint_least16_t)
H5_SIZEOF_UINT_LEAST16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(uint_least32_t)
H5_SIZEOF_UINT_LEAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint_least64_t)
H5_SIZEOF_UINT_LEAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(uint_least8_t)
H5_SIZEOF_UINT_LEAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(unsigned)
H5_SIZEOF_UNSIGNED:INTERNAL=4
//SizeOf for __int64
H5_SIZEOF___INT64:INTERNAL=0
//Other test 
H5_STDC_HEADERS:INTERNAL=1
//Other test 
H5_SYSTEM_SCOPE_THREADS:INTERNAL=1
//Other test 
H5_TIME_WITH_SYS_TIME:INTERNAL=1
//Checking IF compiling unsigned long long to floating-point typecasts
// work
H5_ULLONG_TO_FP_CAST_WORKS:INTERNAL=1
//Checking IF converting unsigned long long to long double with
// precision
H5_ULLONG_TO_LDOUBLE_PRECISION:INTERNAL=1
//Result of TRY_COMPILE
H5_ULLONG_TO_LDOUBLE_PRECISION_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_ULLONG_TO_LDOUBLE_PRECISION_RUN:INTERNAL=0
//Checking IF accurately converting unsigned long to float values
H5_ULONG_TO_FLOAT_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
H5_ULONG_TO_FLOAT_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_ULONG_TO_FLOAT_ACCURATE_RUN:INTERNAL=0
//Checking IF accurately converting unsigned long long to floating-point
// values
H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE:INTERNAL=
//Result of TRY_COMPILE
H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE_RUN:INTERNAL=1
//Other test 
H5_VSNPRINTF_WORKS:INTERNAL=1
//Have include assert.h
HAVE_ASSERT_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_ATTRIBUTE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_C99_DESIGNATED_INITIALIZER:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_C99_FUNC:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_CHAR:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_DOUBLE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_FLOAT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_UNSIGNED_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_VOID_P:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_WORDS_BIGENDIAN:INTERNAL=TRUE
//Have include dlfcn.h
HAVE_DLFCN_H:INTERNAL=1
//Have include emmintrin.h
HAVE_EMMINTRIN_H:INTERNAL=1
//Have include fcntl.h
HAVE_FCNTL_H:INTERNAL=1
//Have include fenv.h
HAVE_FENV_H:INTERNAL=1
//Have function floor
HAVE_FLOOR:INTERNAL=1
//Result of TRY_COMPILE
HAVE_FUNCTION:INTERNAL=TRUE
//Have function getopt
HAVE_GETOPT:INTERNAL=1
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_CHAR:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_DOUBLE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_FLOAT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_LONG_DOUBLE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_LONG_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_OFF64_T:INTERNAL=FALSE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_OFF_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UNSIGNED:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF___INT64:INTERNAL=FALSE
//Have includes ieeefp.h
HAVE_IEEEFP_H:INTERNAL=
//Have include stdlib.h;unistd.h;inttypes.h
HAVE_INTTYPES_H:INTERNAL=1
//Have function isascii
HAVE_ISASCII:INTERNAL=1
// 
HAVE_ITK_CPP_FUNCTION:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF_CHAR:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF___INT64:INTERNAL=FALSE
//Have include limits.h
HAVE_LIMITS_H:INTERNAL=1
//Have includes malloc.h
HAVE_MALLOC_H:INTERNAL=
//Have function memmove
HAVE_MEMMOVE:INTERNAL=1
//Have include memory.h
HAVE_MEMORY_H:INTERNAL=1
//Have function memset
HAVE_MEMSET:INTERNAL=1
//Have function mmap
HAVE_MMAP:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h;sys/socket.h;sys/sockio.h;net/if.h;netinet/in.h
HAVE_NETINET_IN_H:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h;sys/socket.h;sys/sockio.h;net/if.h;netinet/in.h;net/if_dl.h;net/if_arp.h
HAVE_NET_IF_ARP_H:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h;sys/socket.h;sys/sockio.h;net/if.h;netinet/in.h;net/if_dl.h
HAVE_NET_IF_DL_H:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h;sys/socket.h;sys/sockio.h;net/if.h
HAVE_NET_IF_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_OFF64_T:INTERNAL=FALSE
//Have function pow
HAVE_POW:INTERNAL=1
//Result of TRY_COMPILE
HAVE_QNANHIBIT_VALUE:INTERNAL=TRUE
//Have include search.h
HAVE_SEARCH_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_SIZEOF_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_SOCKLEN_T:INTERNAL=TRUE
//Have function sqrt
HAVE_SQRT:INTERNAL=1
//Result of TRY_COMPILE
HAVE_STAT_ST_BLOCKS:INTERNAL=TRUE
//Have include stddef.h
HAVE_STDDEF_H:INTERNAL=1
//Have include stdint.h
HAVE_STDINT_H:INTERNAL=1
//Have include stdlib.h
HAVE_STDLIB_H:INTERNAL=1
//Have function strcasecmp
HAVE_STRCASECMP:INTERNAL=1
//Have function strchr
HAVE_STRCHR:INTERNAL=1
//Have include strings.h
HAVE_STRINGS_H:INTERNAL=1
//Have include string.h
HAVE_STRING_H:INTERNAL=1
//Have function strrchr
HAVE_STRRCHR:INTERNAL=1
//Have function strstr
HAVE_STRSTR:INTERNAL=1
//Have function strtol
HAVE_STRTOL:INTERNAL=1
//Have function strtoul
HAVE_STRTOUL:INTERNAL=1
//Result of TRY_COMPILE
HAVE_STRUCT_TIMEZONE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_STRUCT_TM_TM_ZONE:INTERNAL=TRUE
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h
HAVE_SYS_FILE_H:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h
HAVE_SYS_IOCTL_H:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h;sys/socket.h
HAVE_SYS_SOCKET_H:INTERNAL=1
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h;sys/file.h;sys/socket.h;sys/sockio.h
HAVE_SYS_SOCKIO_H:INTERNAL=1
//Have include sys/stat.h
HAVE_SYS_STAT_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_SYS_TIME_GETTIMEOFDAY:INTERNAL=TRUE
//Have include stdlib.h;unistd.h;inttypes.h;sys/ioctl.h;sys/time.h
HAVE_SYS_TIME_H:INTERNAL=1
//Have include sys/types.h
HAVE_SYS_TYPES_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_TIMEZONE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_TIME_GETTIMEOFDAY:INTERNAL=FALSE
//Result of TRY_COMPILE
HAVE_TM_GMTOFF:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_TM_ZONE:INTERNAL=TRUE
//Have include unistd.h
HAVE_UNISTD_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_VXL_BIG_ENDIAN:INTERNAL=TRUE
//Have includes windows.h
HAVE_WINDOWS_H:INTERNAL=
//Result of TRY_COMPILE
HAVE_WORDS_BIGENDIAN:INTERNAL=TRUE
//Allow External Library Building
HDF5_ALLOW_EXTERNAL_SUPPORT:INTERNAL=OFF
//Build HDF5 C++ Library
HDF5_BUILD_CPP_LIB:INTERNAL=ON
//Build HIGH Level HDF5 Library
HDF5_BUILD_HL_LIB:INTERNAL=OFF
//Disable compiler warnings
HDF5_DISABLE_COMPILER_WARNINGS:INTERNAL=OFF
//Enable the function stack tracing (for developer debugging).
HDF5_ENABLE_CODESTACK:INTERNAL=OFF
//Enable code coverage for Libraries and Programs
HDF5_ENABLE_COVERAGE:INTERNAL=OFF
//Enable deprecated public API symbols
HDF5_ENABLE_DEPRECATED_SYMBOLS:INTERNAL=ON
//Enable GPFS hints for the MPI/POSIX file driver
HDF5_ENABLE_GPFS:INTERNAL=OFF
//Enable datasets larger than memory
HDF5_ENABLE_HSIZET:INTERNAL=ON
//Enable support for large (64-bit) files on Linux.
HDF5_ENABLE_LARGE_FILE:INTERNAL=ON
//Enable parallel build (requires MPI)
HDF5_ENABLE_PARALLEL:INTERNAL=OFF
//Use SZip Filter
HDF5_ENABLE_SZIP_SUPPORT:INTERNAL=OFF
//Enable Threadsafety
HDF5_ENABLE_THREADSAFE:INTERNAL=OFF
//Enable API tracing capability
HDF5_ENABLE_TRACE:INTERNAL=OFF
//Indicate that a memory checker is used
HDF5_ENABLE_USING_MEMCHECKER:INTERNAL=OFF
//Enable Zlib Filters
HDF5_ENABLE_Z_LIB_SUPPORT:INTERNAL=ON
//Securely clear file buffers before writing to file
HDF5_Enable_Clear_File_Buffers:INTERNAL=ON
//Instrument The library
HDF5_Enable_Instrument:INTERNAL=OFF
//Used to pass variables between directories
HDF5_LIBRARIES_TO_EXPORT:INTERNAL=itkhdf5;itkhdf5_cpp
//Enable metadata trace file collection
HDF5_METADATA_TRACE_FILE:INTERNAL=OFF
//CPACK - include external libraries
HDF5_PACKAGE_EXTLIBS:INTERNAL=OFF
//Result of TRY_COMPILE
HDF5_PRINTF_LL_TEST_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
HDF5_PRINTF_LL_TEST_RUN:INTERNAL=0
//Whether to perform strict file format checks
HDF5_STRICT_FORMAT_CHECKS:INTERNAL=OFF
//Use the HDF5 1.6.x API by default
HDF5_USE_16_API_DEFAULT:INTERNAL=OFF
//Use the FLETCHER32 Filter
HDF5_USE_FILTER_FLETCHER32:INTERNAL=ON
//Use the NBIT Filter
HDF5_USE_FILTER_NBIT:INTERNAL=ON
//Use the SCALEOFFSET Filter
HDF5_USE_FILTER_SCALEOFFSET:INTERNAL=ON
//Use the SHUFFLE Filter
HDF5_USE_FILTER_SHUFFLE:INTERNAL=ON
//Use the PACKED BITS feature in h5dump
HDF5_USE_H5DUMP_PACKED_BITS:INTERNAL=ON
//IF data accuracy is guaranteed during data conversions
HDF5_WANT_DATA_ACCURACY:INTERNAL=ON
//exception handling functions is checked during data conversions
HDF5_WANT_DCONV_EXCEPTION:INTERNAL=ON
//Use Legacy Names for Libraries and Programs
HDF_LEGACY_NAMING:INTERNAL=ON
//Result of TRY_COMPILE
INLINE_TEST___inline:INTERNAL=TRUE
//Result of TRY_COMPILE
INLINE_TEST___inline__:INTERNAL=TRUE
//Result of TRY_COMPILE
INLINE_TEST_inline:INTERNAL=TRUE
//Request building Bridge modules
ITKGroup_Bridge:INTERNAL=OFF
//Request building Compatibility modules
ITKGroup_Compatibility:INTERNAL=OFF
//Request building Core modules
ITKGroup_Core:INTERNAL=ON
//Request building Filtering modules
ITKGroup_Filtering:INTERNAL=OFF
//Request building IO modules
ITKGroup_IO:INTERNAL=OFF
//Request building Nonunit modules
ITKGroup_Nonunit:INTERNAL=OFF
//Request building Numerics modules
ITKGroup_Numerics:INTERNAL=OFF
//Request building Registration modules
ITKGroup_Registration:INTERNAL=OFF
//Request building Remote modules
ITKGroup_Remote:INTERNAL=OFF
//Request building Segmentation modules
ITKGroup_Segmentation:INTERNAL=OFF
//Request building ThirdParty modules
ITKGroup_ThirdParty:INTERNAL=OFF
//Request building Video modules
ITKGroup_Video:INTERNAL=OFF
//ADVANCED property for variable: ITK_BUILD_ALL_MODULES_FOR_TESTS
ITK_BUILD_ALL_MODULES_FOR_TESTS-ADVANCED:INTERNAL=1
//Test ITK_COMPILER_DOES_NOT_NEED_MSSE2_FLAG
ITK_COMPILER_DOES_NOT_NEED_MSSE2_FLAG:INTERNAL=1
//Result of TRY_COMPILE
ITK_COMPILER_HAS_BLOCKS:INTERNAL=TRUE
//Test ITK_COMPILER_SUPPORTS_SSE2_32
ITK_COMPILER_SUPPORTS_SSE2_32:INTERNAL=1
//Test ITK_COMPILER_SUPPORTS_SSE2_64
ITK_COMPILER_SUPPORTS_SSE2_64:INTERNAL=1
//ADVANCED property for variable: ITK_COMPUTER_MEMORY_SIZE
ITK_COMPUTER_MEMORY_SIZE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_CPPCHECK_TEST
ITK_CPPCHECK_TEST-ADVANCED:INTERNAL=1
//Result of TRY_COMPILE
ITK_CPP_FUNCTION:INTERNAL=TRUE
//ADVANCED property for variable: ITK_DOXYGEN_CHM
ITK_DOXYGEN_CHM-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_DOCSET
ITK_DOXYGEN_DOCSET-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_ECLIPSEHELP
ITK_DOXYGEN_ECLIPSEHELP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_HTML
ITK_DOXYGEN_HTML-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_LATEX
ITK_DOXYGEN_LATEX-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_QHP
ITK_DOXYGEN_QHP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_RTF
ITK_DOXYGEN_RTF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_XML
ITK_DOXYGEN_XML-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DYNAMIC_LOADING
ITK_DYNAMIC_LOADING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_FORBID_DOWNLOADS
ITK_FORBID_DOWNLOADS-ADVANCED:INTERNAL=1
//Remove code that will become legacy in future releases completely.
ITK_FUTURE_LEGACY_REMOVE:INTERNAL=0
//Result of TRY_COMPILE
ITK_HAS_CPP11_ALIGNAS:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_HAS_CPP11_TYPETRAITS:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_HAS_GNU_ATTRIBUTE_ALIGNED:INTERNAL=TRUE
//Have include tr1/type_traits
ITK_HAS_STLTR1_TR1_TYPE_TRAITS:INTERNAL=1
//Have include type_traits
ITK_HAS_STLTR1_TYPE_TRAITS:INTERNAL=
//For __sync atomic builtins.
ITK_HAVE_SYNC_BUILTINS:INTERNAL=1
//ADVANCED property for variable: ITK_LEGACY_REMOVE
ITK_LEGACY_REMOVE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_LEGACY_SILENT
ITK_LEGACY_SILENT-ADVANCED:INTERNAL=1
//Result of TRY_COMPILE
ITK_SUPPORTS_FDSTREAM_HPP:INTERNAL=TRUE
//Result of TRY_COMPILE
ITK_SUPPORTS_TEMPLATED_FRIEND_FUNCTION_WITH_EMPTY_BRACKETS:INTERNAL=TRUE
//Result of TRY_COMPILE
ITK_SUPPORTS_TEMPLATED_FRIEND_FUNCTION_WITH_NULL_STRING:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_SUPPORTS_TEMPLATED_FRIEND_FUNCTION_WITH_TEMPLATE_ARGUMENTS:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_SUPPORTS_WCHAR_T_FILENAME_CSTYLEIO:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_SUPPORTS_WCHAR_T_FILENAME_IOSTREAMS_CONSTRUCTORS:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_TEST_SYNC_BUILTINS_COMPILED:INTERNAL=TRUE
//ADVANCED property for variable: ITK_USE_64BITS_IDS
ITK_USE_64BITS_IDS-ADVANCED:INTERNAL=1
//MODIFIED property for variable: ITK_USE_64BITS_IDS
ITK_USE_64BITS_IDS-MODIFIED:INTERNAL=ON
//ADVANCED property for variable: ITK_USE_BRAINWEB_DATA
ITK_USE_BRAINWEB_DATA-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_CONCEPT_CHECKING
ITK_USE_CONCEPT_CHECKING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_FFTWD
ITK_USE_FFTWD-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_FFTWF
ITK_USE_FFTWF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_FLOAT_SPACE_PRECISION
ITK_USE_FLOAT_SPACE_PRECISION-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_GPU
ITK_USE_GPU-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_KWSTYLE
ITK_USE_KWSTYLE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_STRICT_CONCEPT_CHECKING
ITK_USE_STRICT_CONCEPT_CHECKING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_DOUBLECONVERSION
ITK_USE_SYSTEM_DOUBLECONVERSION-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_EXPAT
ITK_USE_SYSTEM_EXPAT-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_FFTW
ITK_USE_SYSTEM_FFTW-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_GDCM
ITK_USE_SYSTEM_GDCM-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_HDF5
ITK_USE_SYSTEM_HDF5-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_JPEG
ITK_USE_SYSTEM_JPEG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_LIBRARIES
ITK_USE_SYSTEM_LIBRARIES-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_PNG
ITK_USE_SYSTEM_PNG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_SZIP
ITK_USE_SYSTEM_SZIP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_TIFF
ITK_USE_SYSTEM_TIFF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_VXL
ITK_USE_SYSTEM_VXL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_ZLIB
ITK_USE_SYSTEM_ZLIB-ADVANCED:INTERNAL=1
//Build external languages support
ITK_WRAPPING:INTERNAL=OFF
//ADVANCED property for variable: ITK_WRAP_JAVA
ITK_WRAP_JAVA-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_WRAP_PERL
ITK_WRAP_PERL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_WRAP_RUBY
ITK_WRAP_RUBY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_WRAP_TCL
ITK_WRAP_TCL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: KWSTYLE_EXECUTABLE
KWSTYLE_EXECUTABLE-ADVANCED:INTERNAL=1
//Result of TRY_RUN
KWSYS_CHAR_IS_SIGNED:INTERNAL=0
//Result of TRY_COMPILE
KWSYS_CHAR_IS_SIGNED_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ARGUMENT_DEPENDENT_LOOKUP_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ATOLL_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ATOL_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_BACKTRACE_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_CSTDDEF_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_CSTDIO_COMPILED:INTERNAL=TRUE
//Have include cxxabi.h
KWSYS_CXX_HAS_CXXABIH:INTERNAL=1
//Result of TRY_COMPILE
KWSYS_CXX_HAS_CXXABI_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_DLADDR_COMPILED:INTERNAL=TRUE
//Have include dlfcn.h
KWSYS_CXX_HAS_DLFCNH:INTERNAL=1
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ENVIRON_IN_STDLIB_H_COMPILED:INTERNAL=FALSE
//Have include execinfo.h
KWSYS_CXX_HAS_EXECINFOH:INTERNAL=1
//Result of TRY_COMPILE
KWSYS_CXX_HAS_FULL_SPECIALIZATION_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_LONG_LONG_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_MEMBER_TEMPLATES_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_NULL_TEMPLATE_ARGS_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_RLIMIT64_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_SETENV_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_UNSETENV_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_UTIMENSAT_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_UTIMES_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS__ATOI64_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS___INT64_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_C_HAS_PTRDIFF_T_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_C_HAS_SSIZE_T_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_C_TYPE_MACROS_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_IOS_HAVE_BINARY_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_IOS_HAVE_STD_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_IOS_USE_ANSI_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_IOS_USE_SSTREAM_COMPILED:INTERNAL=TRUE
//Result of TRY_RUN
KWSYS_LFS_WORKS:INTERNAL=0
//Result of TRY_COMPILE
KWSYS_LFS_WORKS_COMPILED:INTERNAL=TRUE
//CHECK_TYPE_SIZE: sizeof(char)
KWSYS_SIZEOF_CHAR:INTERNAL=1
//CHECK_TYPE_SIZE: __int64 unknown
KWSYS_SIZEOF___INT64:INTERNAL=
//Result of TRY_COMPILE
KWSYS_STAT_HAS_ST_MTIM_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_MAX_SIZE_ARGUMENT_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_OBJECTS_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_REBIND_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_TEMPLATE_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ITERATOR_TRAITS_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_WSTRING_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAVE_STD_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_STRING_HAVE_NEQ_CHAR_COMPILED:INTERNAL=TRUE
//Have include sys/types.h;ifaddrs.h
KWSYS_SYS_HAS_IFADDRS_H:INTERNAL=1
//Result of TRY_COMPILE
LONE_COLON:INTERNAL=FALSE
//ADVANCED property for variable: MAXIMUM_NUMBER_OF_HEADERS
MAXIMUM_NUMBER_OF_HEADERS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_AnalyzeObjectMapIO
Module_AnalyzeObjectMapIO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_BridgeNumPy
Module_BridgeNumPy-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_HigherOrderAccurateGradient
Module_HigherOrderAccurateGradient-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_IOFDF
Module_IOFDF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_IOSTL
Module_IOSTL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_IOTransformDCMTK
Module_IOTransformDCMTK-ADVANCED:INTERNAL=1
//Request building ITKAnisotropicSmoothing
Module_ITKAnisotropicSmoothing:INTERNAL=OFF
//Request building ITKAntiAlias
Module_ITKAntiAlias:INTERNAL=OFF
//Request building ITKBiasCorrection
Module_ITKBiasCorrection:INTERNAL=OFF
//Request building ITKBinaryMathematicalMorphology
Module_ITKBinaryMathematicalMorphology:INTERNAL=OFF
//Request building ITKBioCell
Module_ITKBioCell:INTERNAL=OFF
//Request building ITKClassifiers
Module_ITKClassifiers:INTERNAL=OFF
//Request building ITKColormap
Module_ITKColormap:INTERNAL=OFF
//Request building ITKCommon
Module_ITKCommon:INTERNAL=OFF
//Request building ITKConnectedComponents
Module_ITKConnectedComponents:INTERNAL=OFF
//Request building ITKConvolution
Module_ITKConvolution:INTERNAL=OFF
//Request building ITKCurvatureFlow
Module_ITKCurvatureFlow:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDCMTK
Module_ITKDCMTK-ADVANCED:INTERNAL=1
//Request building ITKDICOMParser
Module_ITKDICOMParser:INTERNAL=OFF
//Request building ITKDeconvolution
Module_ITKDeconvolution:INTERNAL=OFF
//Request building ITKDeformableMesh
Module_ITKDeformableMesh:INTERNAL=OFF
//Request building ITKDenoising
Module_ITKDenoising:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDeprecated
Module_ITKDeprecated-ADVANCED:INTERNAL=1
//Request building ITKDiffusionTensorImage
Module_ITKDiffusionTensorImage:INTERNAL=OFF
//Request building ITKDisplacementField
Module_ITKDisplacementField:INTERNAL=OFF
//Request building ITKDistanceMap
Module_ITKDistanceMap:INTERNAL=OFF
//Request building ITKDoubleConversion
Module_ITKDoubleConversion:INTERNAL=OFF
//Request building ITKEigen
Module_ITKEigen:INTERNAL=OFF
//Request building ITKExpat
Module_ITKExpat:INTERNAL=OFF
//Request building ITKFEM
Module_ITKFEM:INTERNAL=OFF
//Request building ITKFEMRegistration
Module_ITKFEMRegistration:INTERNAL=OFF
//Request building ITKFFT
Module_ITKFFT:INTERNAL=OFF
//Request building ITKFastMarching
Module_ITKFastMarching:INTERNAL=OFF
//Request building ITKFiniteDifference
Module_ITKFiniteDifference:INTERNAL=OFF
//Request building ITKGDCM
Module_ITKGDCM:INTERNAL=OFF
//Request building ITKGIFTI
Module_ITKGIFTI:INTERNAL=OFF
//Request building ITKGPUAnisotropicSmoothing
Module_ITKGPUAnisotropicSmoothing:INTERNAL=OFF
//Request building ITKGPUCommon
Module_ITKGPUCommon:INTERNAL=OFF
//Request building ITKGPUFiniteDifference
Module_ITKGPUFiniteDifference:INTERNAL=OFF
//Request building ITKGPUImageFilterBase
Module_ITKGPUImageFilterBase:INTERNAL=OFF
//Request building ITKGPUPDEDeformableRegistration
Module_ITKGPUPDEDeformableRegistration:INTERNAL=OFF
//Request building ITKGPURegistrationCommon
Module_ITKGPURegistrationCommon:INTERNAL=OFF
//Request building ITKGPUSmoothing
Module_ITKGPUSmoothing:INTERNAL=OFF
//Request building ITKGPUThresholding
Module_ITKGPUThresholding:INTERNAL=OFF
//Request building ITKHDF5
Module_ITKHDF5:INTERNAL=OFF
//Request building ITKIOBMP
Module_ITKIOBMP:INTERNAL=OFF
//Request building ITKIOBioRad
Module_ITKIOBioRad:INTERNAL=OFF
//Request building ITKIOCSV
Module_ITKIOCSV:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIODCMTK
Module_ITKIODCMTK-ADVANCED:INTERNAL=1
//Request building ITKIOGDCM
Module_ITKIOGDCM:INTERNAL=OFF
//Request building ITKIOGE
Module_ITKIOGE:INTERNAL=OFF
//Request building ITKIOGIPL
Module_ITKIOGIPL:INTERNAL=OFF
//Request building ITKIOHDF5
Module_ITKIOHDF5:INTERNAL=OFF
//Request building ITKIOIPL
Module_ITKIOIPL:INTERNAL=OFF
//Request building ITKIOImageBase
Module_ITKIOImageBase:INTERNAL=OFF
//Request building ITKIOJPEG
Module_ITKIOJPEG:INTERNAL=OFF
//Request building ITKIOLSM
Module_ITKIOLSM:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOMINC
Module_ITKIOMINC-ADVANCED:INTERNAL=1
//Request building ITKIOMRC
Module_ITKIOMRC:INTERNAL=OFF
//Request building ITKIOMesh
Module_ITKIOMesh:INTERNAL=OFF
//Request building ITKIOMeta
Module_ITKIOMeta:INTERNAL=OFF
//Request building ITKIONIFTI
Module_ITKIONIFTI:INTERNAL=OFF
//Request building ITKIONRRD
Module_ITKIONRRD:INTERNAL=OFF
//Request building ITKIOPNG
Module_ITKIOPNG:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOPhilipsREC
Module_ITKIOPhilipsREC-ADVANCED:INTERNAL=1
//Request building ITKIORAW
Module_ITKIORAW:INTERNAL=OFF
//Request building ITKIOSiemens
Module_ITKIOSiemens:INTERNAL=OFF
//Request building ITKIOSpatialObjects
Module_ITKIOSpatialObjects:INTERNAL=OFF
//Request building ITKIOStimulate
Module_ITKIOStimulate:INTERNAL=OFF
//Request building ITKIOTIFF
Module_ITKIOTIFF:INTERNAL=OFF
//Request building ITKIOTransformBase
Module_ITKIOTransformBase:INTERNAL=OFF
//Request building ITKIOTransformHDF5
Module_ITKIOTransformHDF5:INTERNAL=OFF
//Request building ITKIOTransformInsightLegacy
Module_ITKIOTransformInsightLegacy:INTERNAL=OFF
//Request building ITKIOTransformMatlab
Module_ITKIOTransformMatlab:INTERNAL=OFF
//Request building ITKIOVTK
Module_ITKIOVTK:INTERNAL=OFF
//Request building ITKIOXML
Module_ITKIOXML:INTERNAL=OFF
//Request building ITKImageAdaptors
Module_ITKImageAdaptors:INTERNAL=OFF
//Request building ITKImageCompare
Module_ITKImageCompare:INTERNAL=OFF
//Request building ITKImageCompose
Module_ITKImageCompose:INTERNAL=OFF
//Request building ITKImageFeature
Module_ITKImageFeature:INTERNAL=OFF
//Request building ITKImageFilterBase
Module_ITKImageFilterBase:INTERNAL=OFF
//Request building ITKImageFunction
Module_ITKImageFunction:INTERNAL=OFF
//Request building ITKImageFusion
Module_ITKImageFusion:INTERNAL=OFF
//Request building ITKImageGradient
Module_ITKImageGradient:INTERNAL=OFF
//Request building ITKImageGrid
Module_ITKImageGrid:INTERNAL=OFF
//Request building ITKImageIntensity
Module_ITKImageIntensity:INTERNAL=OFF
//Request building ITKImageLabel
Module_ITKImageLabel:INTERNAL=OFF
//Request building ITKImageNoise
Module_ITKImageNoise:INTERNAL=OFF
//Request building ITKImageSources
Module_ITKImageSources:INTERNAL=OFF
//Request building ITKImageStatistics
Module_ITKImageStatistics:INTERNAL=OFF
//Request building ITKIntegratedTest
Module_ITKIntegratedTest:INTERNAL=OFF
//Request building ITKJPEG
Module_ITKJPEG:INTERNAL=OFF
//Request building ITKKLMRegionGrowing
Module_ITKKLMRegionGrowing:INTERNAL=OFF
//Request building ITKKWSys
Module_ITKKWSys:INTERNAL=OFF
//Request building ITKLabelMap
Module_ITKLabelMap:INTERNAL=OFF
//Request building ITKLabelVoting
Module_ITKLabelVoting:INTERNAL=OFF
//Request building ITKLevelSets
Module_ITKLevelSets:INTERNAL=OFF
//Request building ITKLevelSetsv4
Module_ITKLevelSetsv4:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKLevelSetsv4Visualization
Module_ITKLevelSetsv4Visualization-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKMINC
Module_ITKMINC-ADVANCED:INTERNAL=1
//Request building ITKMarkovRandomFieldsClassifiers
Module_ITKMarkovRandomFieldsClassifiers:INTERNAL=OFF
//Request building ITKMathematicalMorphology
Module_ITKMathematicalMorphology:INTERNAL=OFF
//Request building ITKMesh
Module_ITKMesh:INTERNAL=OFF
//Request building ITKMetaIO
Module_ITKMetaIO:INTERNAL=OFF
//Request building ITKMetricsv4
Module_ITKMetricsv4:INTERNAL=OFF
//Request building ITKNIFTI
Module_ITKNIFTI:INTERNAL=OFF
//Request building ITKNarrowBand
Module_ITKNarrowBand:INTERNAL=OFF
//Request building ITKNetlib
Module_ITKNetlib:INTERNAL=OFF
//Request building ITKNeuralNetworks
Module_ITKNeuralNetworks:INTERNAL=OFF
//Request building ITKNrrdIO
Module_ITKNrrdIO:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKOpenJPEG
Module_ITKOpenJPEG-ADVANCED:INTERNAL=1
//Request building ITKOptimizers
Module_ITKOptimizers:INTERNAL=OFF
//Request building ITKOptimizersv4
Module_ITKOptimizersv4:INTERNAL=OFF
//Request building ITKPDEDeformableRegistration
Module_ITKPDEDeformableRegistration:INTERNAL=OFF
//Request building ITKPNG
Module_ITKPNG:INTERNAL=OFF
//Request building ITKPath
Module_ITKPath:INTERNAL=OFF
//Request building ITKPolynomials
Module_ITKPolynomials:INTERNAL=OFF
//Request building ITKQuadEdgeMesh
Module_ITKQuadEdgeMesh:INTERNAL=OFF
//Request building ITKQuadEdgeMeshFiltering
Module_ITKQuadEdgeMeshFiltering:INTERNAL=OFF
//Request building ITKRegionGrowing
Module_ITKRegionGrowing:INTERNAL=OFF
//Request building ITKRegistrationCommon
Module_ITKRegistrationCommon:INTERNAL=OFF
//Request building ITKRegistrationMethodsv4
Module_ITKRegistrationMethodsv4:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKReview
Module_ITKReview-ADVANCED:INTERNAL=1
//Request building ITKSignedDistanceFunction
Module_ITKSignedDistanceFunction:INTERNAL=OFF
//Request building ITKSmoothing
Module_ITKSmoothing:INTERNAL=OFF
//Request building ITKSpatialFunction
Module_ITKSpatialFunction:INTERNAL=OFF
//Request building ITKSpatialObjects
Module_ITKSpatialObjects:INTERNAL=OFF
//Request building ITKStatistics
Module_ITKStatistics:INTERNAL=OFF
//Request building ITKTIFF
Module_ITKTIFF:INTERNAL=OFF
//Request building ITKTestKernel
Module_ITKTestKernel:INTERNAL=OFF
//Request building ITKThresholding
Module_ITKThresholding:INTERNAL=OFF
//Request building ITKTransform
Module_ITKTransform:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKV3Compatibility
Module_ITKV3Compatibility-ADVANCED:INTERNAL=1
//Request building ITKVNL
Module_ITKVNL:INTERNAL=OFF
//Request building ITKVNLInstantiation
Module_ITKVNLInstantiation:INTERNAL=OFF
//Request building ITKVTK
Module_ITKVTK:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVideoBridgeOpenCV
Module_ITKVideoBridgeOpenCV-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKVideoBridgeVXL
Module_ITKVideoBridgeVXL-ADVANCED:INTERNAL=1
//Request building ITKVideoCore
Module_ITKVideoCore:INTERNAL=OFF
//Request building ITKVideoFiltering
Module_ITKVideoFiltering:INTERNAL=OFF
//Request building ITKVideoIO
Module_ITKVideoIO:INTERNAL=OFF
//Request building ITKVoronoi
Module_ITKVoronoi:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVtkGlue
Module_ITKVtkGlue-ADVANCED:INTERNAL=1
//MODIFIED property for variable: Module_ITKVtkGlue
Module_ITKVtkGlue-MODIFIED:INTERNAL=ON
//Request building ITKWatersheds
Module_ITKWatersheds:INTERNAL=OFF
//Request building ITKZLIB
Module_ITKZLIB:INTERNAL=OFF
//ADVANCED property for variable: Module_LabelErodeDilate
Module_LabelErodeDilate-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_LesionSizingToolkit
Module_LesionSizingToolkit-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_MGHIO
Module_MGHIO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_MinimalPathExtraction
Module_MinimalPathExtraction-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ParabolicMorphology
Module_ParabolicMorphology-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SCIFIO
Module_SCIFIO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SkullStrip
Module_SkullStrip-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SmoothingRecursiveYvvGaussianFilter
Module_SmoothingRecursiveYvvGaussianFilter-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SphinxExamples
Module_SphinxExamples-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SplitComponents
Module_SplitComponents-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SubdivisionQuadEdgeMeshFilter
Module_SubdivisionQuadEdgeMeshFilter-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_VariationalRegistration
Module_VariationalRegistration-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_WikiExamples
Module_WikiExamples-ADVANCED:INTERNAL=1
//Have library c
NOT_NEED_LIBNSL:INTERNAL=1
OPENJPEG_INSTALL_PACKAGE_DIR:INTERNAL=lib/gdcmopenjpeg-2.0
//ADVANCED property for variable: PERL_EXECUTABLE
PERL_EXECUTABLE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: PYTHON_EXECUTABLE
PYTHON_EXECUTABLE-ADVANCED:INTERNAL=1
//The 22nd bit of 32-bit floating-point quiet NaN.
QNANHIBIT:INTERNAL=1
//Result of TRY_RUN
QNANHIBIT_VALUE:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int)
SIZEOF_INT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(long)
SIZEOF_LONG:INTERNAL=8
//Have function strsignal
SOCKETXX_HAVE_STRSIGNAL:INTERNAL=1
//Result of TRY_COMPILE
STDC_HEADERS:INTERNAL=TRUE
//Result of TRY_COMPILE
SYSTEM_SCOPE_THREADS:INTERNAL=TRUE
//Result of TRY_COMPILE
TIME_WITH_SYS_TIME:INTERNAL=TRUE
//ADVANCED property for variable: USE_COMPILER_HIDDEN_VISIBILITY
USE_COMPILER_HIDDEN_VISIBILITY-ADVANCED:INTERNAL=1
//VXL test 
VCL_ALLOWS_INLINE_INSTANTIATION:INTERNAL=1
//VXL test 
VCL_ALLOWS_NAMESPACE_STD:INTERNAL=1
//VXL test 
VCL_CANNOT_SPECIALIZE_CV:INTERNAL=1
//VXL test 
VCL_CAN_DO_COMPLETE_DEFAULT_TYPE_PARAMETER:INTERNAL=1
//VXL test 
VCL_CAN_DO_IMPLICIT_TEMPLATES:INTERNAL=1
//VXL test 
VCL_CAN_DO_NON_TYPE_FUNCTION_TEMPLATE_PARAMETER:INTERNAL=1
//VXL test 
VCL_CAN_DO_PARTIAL_SPECIALIZATION:INTERNAL=1
//VXL test 
VCL_CAN_DO_STATIC_TEMPLATE_MEMBER:INTERNAL=1
//VXL test 
VCL_CAN_DO_TEMPLATE_DEFAULT_TYPE_PARAMETER:INTERNAL=1
//VXL test  (successful run)
VCL_CHAR_IS_SIGNED:INTERNAL=1
//Result of TRY_COMPILE
VCL_CHAR_IS_SIGNED_COMPILED:INTERNAL=TRUE
//VXL test  (successful run)
VCL_COMPLEX_POW_WORKS:INTERNAL=1
//Result of TRY_COMPILE
VCL_COMPLEX_POW_WORKS_COMPILED:INTERNAL=TRUE
//Have include algorithm
VCL_CXX_HAS_HEADER_ALGORITHM:INTERNAL=1
//Have include bitset
VCL_CXX_HAS_HEADER_BITSET:INTERNAL=1
//Have include cassert
VCL_CXX_HAS_HEADER_CASSERT:INTERNAL=1
//Have include cctype
VCL_CXX_HAS_HEADER_CCTYPE:INTERNAL=1
//Have include cerrno
VCL_CXX_HAS_HEADER_CERRNO:INTERNAL=1
//Have include cfloat
VCL_CXX_HAS_HEADER_CFLOAT:INTERNAL=1
//Have include ciso646
VCL_CXX_HAS_HEADER_CISO646:INTERNAL=1
//Have include climits
VCL_CXX_HAS_HEADER_CLIMITS:INTERNAL=1
//Have include clocale
VCL_CXX_HAS_HEADER_CLOCALE:INTERNAL=1
//Have include cmath
VCL_CXX_HAS_HEADER_CMATH:INTERNAL=1
//Have include complex
VCL_CXX_HAS_HEADER_COMPLEX:INTERNAL=1
//Have include csetjmp
VCL_CXX_HAS_HEADER_CSETJMP:INTERNAL=1
//Have include csignal
VCL_CXX_HAS_HEADER_CSIGNAL:INTERNAL=1
//Have include cstdarg
VCL_CXX_HAS_HEADER_CSTDARG:INTERNAL=1
//Have include cstddef
VCL_CXX_HAS_HEADER_CSTDDEF:INTERNAL=1
//Have include cstdio
VCL_CXX_HAS_HEADER_CSTDIO:INTERNAL=1
//Have include cstdlib
VCL_CXX_HAS_HEADER_CSTDLIB:INTERNAL=1
//Have include cstring
VCL_CXX_HAS_HEADER_CSTRING:INTERNAL=1
//Have include ctime
VCL_CXX_HAS_HEADER_CTIME:INTERNAL=1
//Have include cwchar
VCL_CXX_HAS_HEADER_CWCHAR:INTERNAL=1
//Have include cwctype
VCL_CXX_HAS_HEADER_CWCTYPE:INTERNAL=1
//Have include deque
VCL_CXX_HAS_HEADER_DEQUE:INTERNAL=1
//Have include exception
VCL_CXX_HAS_HEADER_EXCEPTION:INTERNAL=1
//Have include fstream
VCL_CXX_HAS_HEADER_FSTREAM:INTERNAL=1
//Have include functional
VCL_CXX_HAS_HEADER_FUNCTIONAL:INTERNAL=1
//Have include iomanip
VCL_CXX_HAS_HEADER_IOMANIP:INTERNAL=1
//Have include ios
VCL_CXX_HAS_HEADER_IOS:INTERNAL=1
//Have include iosfwd
VCL_CXX_HAS_HEADER_IOSFWD:INTERNAL=1
//Have include iostream
VCL_CXX_HAS_HEADER_IOSTREAM:INTERNAL=1
//Have include iso646.h
VCL_CXX_HAS_HEADER_ISO646_H:INTERNAL=1
//Have include istream
VCL_CXX_HAS_HEADER_ISTREAM:INTERNAL=1
//Have include iterator
VCL_CXX_HAS_HEADER_ITERATOR:INTERNAL=1
//Have include limits
VCL_CXX_HAS_HEADER_LIMITS:INTERNAL=1
//Have include list
VCL_CXX_HAS_HEADER_LIST:INTERNAL=1
//Have include locale
VCL_CXX_HAS_HEADER_LOCALE:INTERNAL=1
//Have include map
VCL_CXX_HAS_HEADER_MAP:INTERNAL=1
//Have include memory
VCL_CXX_HAS_HEADER_MEMORY:INTERNAL=1
//Have include new
VCL_CXX_HAS_HEADER_NEW:INTERNAL=1
//Have include numeric
VCL_CXX_HAS_HEADER_NUMERIC:INTERNAL=1
//Have include ostream
VCL_CXX_HAS_HEADER_OSTREAM:INTERNAL=1
//Have include queue
VCL_CXX_HAS_HEADER_QUEUE:INTERNAL=1
//Have include set
VCL_CXX_HAS_HEADER_SET:INTERNAL=1
//Have include sstream
VCL_CXX_HAS_HEADER_SSTREAM:INTERNAL=1
//Have include stack
VCL_CXX_HAS_HEADER_STACK:INTERNAL=1
//Have include stdexcept
VCL_CXX_HAS_HEADER_STDEXCEPT:INTERNAL=1
//Have include streambuf
VCL_CXX_HAS_HEADER_STREAMBUF:INTERNAL=1
//Have include string
VCL_CXX_HAS_HEADER_STRING:INTERNAL=1
//Have include strstream
VCL_CXX_HAS_HEADER_STRSTREAM:INTERNAL=1
//Have include typeinfo
VCL_CXX_HAS_HEADER_TYPEINFO:INTERNAL=1
//Have include utility
VCL_CXX_HAS_HEADER_UTILITY:INTERNAL=1
//Have include valarray
VCL_CXX_HAS_HEADER_VALARRAY:INTERNAL=1
//Have include vector
VCL_CXX_HAS_HEADER_VECTOR:INTERNAL=1
//Have include tr1/memory
VCL_CXX_HAS_TR1:INTERNAL=1
//VXL test 
VCL_DEFAULT_VALUE:INTERNAL=1
//VXL test 
VCL_DEFINE_SPECIALIZATION:INTERNAL=1
//VXL test 
VCL_FOR_SCOPE_HACK:INTERNAL=1
//VXL test 
VCL_HAS_BOOL:INTERNAL=1
//VXL test 
VCL_HAS_DYNAMIC_CAST:INTERNAL=1
//VXL test 
VCL_HAS_EXCEPTIONS:INTERNAL=1
//VXL test 
VCL_HAS_EXPLICIT:INTERNAL=1
//VXL test 
VCL_HAS_EXPORT:INTERNAL=1
//VXL test  (successful run)
VCL_HAS_LFS:INTERNAL=1
//Result of TRY_COMPILE
VCL_HAS_LFS_COMPILED:INTERNAL=TRUE
//VXL test 
VCL_HAS_LONG_LONG:INTERNAL=1
//VXL test 
VCL_HAS_MEMBER_TEMPLATES:INTERNAL=1
//VXL test 
VCL_HAS_MUTABLE:INTERNAL=1
//VXL test 
VCL_HAS_NAMESPACES:INTERNAL=1
//VXL test 
VCL_HAS_RTTI:INTERNAL=1
//VXL test  (successful run)
VCL_HAS_SLICED_DESTRUCTOR_BUG:INTERNAL=1
//Result of TRY_COMPILE
VCL_HAS_SLICED_DESTRUCTOR_BUG_COMPILED:INTERNAL=TRUE
//Test  (failed to compile)
VCL_HAS_TEMPLATE_SYMBOLS:INTERNAL=0
//Result of TRY_COMPILE
VCL_HAS_TEMPLATE_SYMBOLS_COMPILED:INTERNAL=FALSE
//VXL test 
VCL_HAS_TYPENAME:INTERNAL=1
//VXL test  (successful run)
VCL_HAS_WORKING_STRINGSTREAM:INTERNAL=1
//Result of TRY_COMPILE
VCL_HAS_WORKING_STRINGSTREAM_COMPILED:INTERNAL=TRUE
//ADVANCED property for variable: VCL_INCLUDE_CXX_0X
VCL_INCLUDE_CXX_0X-ADVANCED:INTERNAL=1
//Have symbol std::shared_ptr<void>
VCL_MEMORY_HAS_SHARED_PTR:INTERNAL=
//VXL test 
VCL_NEEDS_INLINE_INSTANTIATION:INTERNAL=1
//Test 
VCL_NEEDS_NAMESPACE_STD:INTERNAL=0
//VXL test 
VCL_NEED_FRIEND_FOR_TEMPLATE_OVERLOAD:INTERNAL=1
//VXL test 
VCL_NO_STATIC_DATA_MEMBERS:INTERNAL=1
//Test 
VCL_NULL_TMPL_ARGS:INTERNAL=0
//VXL test  (successful run)
VCL_NUMERIC_LIMITS_HAS_INFINITY:INTERNAL=1
//Result of TRY_COMPILE
VCL_NUMERIC_LIMITS_HAS_INFINITY_COMPILED:INTERNAL=TRUE
//Test 
VCL_OVERLOAD_CAST:INTERNAL=0
//VXL test  (successful run)
VCL_PROCESSOR_HAS_INFINITY:INTERNAL=1
//Result of TRY_COMPILE
VCL_PROCESSOR_HAS_INFINITY_COMPILED:INTERNAL=TRUE
//Test 
VCL_STATIC_CONST_INIT_FLOAT:INTERNAL=0
//VXL test 
VCL_STATIC_CONST_INIT_INT:INTERNAL=1
//Test 
VCL_STATIC_CONST_INIT_NO_DEFN:INTERNAL=0
//VXL test 
VCL_SUNPRO_CLASS_SCOPE_HACK:INTERNAL=1
//VXL test 
VCL_TEMPLATE_MATCHES_TOO_OFTEN:INTERNAL=1
//Have symbol std::tr1::shared_ptr<void>
VCL_TR1_MEMORY_HAS_SHARED_PTR:INTERNAL=1
//ADVANCED property for variable: VNL_CONFIG_CHECK_BOUNDS
VNL_CONFIG_CHECK_BOUNDS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: VNL_CONFIG_ENABLE_SSE2
VNL_CONFIG_ENABLE_SSE2-ADVANCED:INTERNAL=1
//ADVANCED property for variable: VNL_CONFIG_ENABLE_SSE2_ROUNDING
VNL_CONFIG_ENABLE_SSE2_ROUNDING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: VNL_CONFIG_LEGACY_METHODS
VNL_CONFIG_LEGACY_METHODS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: VNL_CONFIG_THREAD_SAFE
VNL_CONFIG_THREAD_SAFE-ADVANCED:INTERNAL=1
//Result of TRY_COMPILE
VSNPRINTF_WORKS:INTERNAL=TRUE
//MODIFIED property for variable: VTK_DIR
VTK_DIR-MODIFIED:INTERNAL=ON
//VXL test 
VXL_APPLE_HAS_INLINE_ISNAND:INTERNAL=1
//Test 
VXL_APPLE_HAS_ISNAND:INTERNAL=0
//Result of TEST_BIG_ENDIAN
VXL_BIG_ENDIAN:INTERNAL=0
//VXL test result
VXL_BYTE:INTERNAL=char
//Serial number of last configuration
VXL_CONFIG_SERIAL_LAST:INTERNAL=2009-04-28-001
//Have symbol finite
VXL_C_MATH_HAS_FINITE:INTERNAL=1
//Have symbol finitef
VXL_C_MATH_HAS_FINITEF:INTERNAL=
//Have symbol finitel
VXL_C_MATH_HAS_FINITEL:INTERNAL=
//VXL test 
VXL_C_MATH_HAS_LROUND:INTERNAL=1
//Have symbol sqrtf
VXL_C_MATH_HAS_SQRTF:INTERNAL=1
//Test 
VXL_HAS_ALIGNED_MALLOC:INTERNAL=0
//VXL test result
VXL_HAS_BYTE:INTERNAL=1
//Test 
VXL_HAS_DBGHELP_H:INTERNAL=0
//Have include emmintrin.h
VXL_HAS_EMMINTRIN_H:INTERNAL=1
//Have include ieeefp.h
VXL_HAS_IEEEFP_H:INTERNAL=
//VXL test result
VXL_HAS_IEEE_128:INTERNAL=1
//VXL test result
VXL_HAS_IEEE_32:INTERNAL=1
//VXL test result
VXL_HAS_IEEE_64:INTERNAL=1
//VXL test result
VXL_HAS_IEEE_96:INTERNAL=0
//VXL test result
VXL_HAS_INT_16:INTERNAL=1
//VXL test result
VXL_HAS_INT_32:INTERNAL=1
//VXL test result
VXL_HAS_INT_64:INTERNAL=1
//VXL test result
VXL_HAS_INT_8:INTERNAL=1
//Test 
VXL_HAS_MINGW_ALIGNED_MALLOC:INTERNAL=0
//VXL test 
VXL_HAS_MM_MALLOC:INTERNAL=1
//Test 
VXL_HAS_POSIX_MEMALIGN:INTERNAL=0
//Have include pthread.h
VXL_HAS_PTHREAD_H:INTERNAL=1
//Have include semaphore.h
VXL_HAS_SEMAPHORE_H:INTERNAL=1
//VXL test  (successful run)
VXL_HAS_SSE2_HARDWARE_SUPPORT:INTERNAL=1
//Result of TRY_COMPILE
VXL_HAS_SSE2_HARDWARE_SUPPORT_COMPILED:INTERNAL=TRUE
//Have symbol finite
VXL_IEEEFP_HAS_FINITE:INTERNAL=
//VXL test result
VXL_IEEE_128:INTERNAL=long double
//VXL test result
VXL_IEEE_32:INTERNAL=float
//VXL test result
VXL_IEEE_64:INTERNAL=double
//VXL test result
VXL_IEEE_96:INTERNAL=void
//VXL test result
VXL_INT_16:INTERNAL=short
//VXL test result
VXL_INT_32:INTERNAL=int
//VXL test result
VXL_INT_64:INTERNAL=long
//VXL test result
VXL_INT_8:INTERNAL=char
//VXL test 
VXL_PIC_COMPATIBLE:INTERNAL=1
//Have symbol drand48
VXL_STDLIB_HAS_DRAND48:INTERNAL=1
//Have symbol lrand48
VXL_STDLIB_HAS_LRAND48:INTERNAL=1
//VXL test 
VXL_STDLIB_HAS_QSORT:INTERNAL=1
//Have symbol srand48
VXL_STDLIB_HAS_SRAND48:INTERNAL=1
//Have function getpid
VXL_UNISTD_HAS_GETPID:INTERNAL=1
//Have symbol intptr_t
VXL_UNISTD_HAS_INTPTR_T:INTERNAL=1
//Have function lchown
VXL_UNISTD_HAS_LCHOWN:INTERNAL=1
//Have function pread
VXL_UNISTD_HAS_PREAD:INTERNAL=1
//Have function pwrite
VXL_UNISTD_HAS_PWRITE:INTERNAL=1
//Have function tell
VXL_UNISTD_HAS_TELL:INTERNAL=
//Have function ualarm
VXL_UNISTD_HAS_UALARM:INTERNAL=1
//Have symbol useconds_t
VXL_UNISTD_HAS_USECONDS_T:INTERNAL=1
//Have function usleep
VXL_UNISTD_HAS_USLEEP:INTERNAL=1
//VXL test 
VXL_UNISTD_USLEEP_IS_VOID:INTERNAL=1
//ADVANCED property for variable: VXL_UPDATE_CONFIGURATION
VXL_UPDATE_CONFIGURATION-ADVANCED:INTERNAL=1
//Result of TEST_BIG_ENDIAN
WORDS_BIGENDIAN:INTERNAL=0
//ADVANCED property for variable: X11_ICE_INCLUDE_PATH
X11_ICE_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_ICE_LIB
X11_ICE_LIB-ADVANCED:INTERNAL=1
//Have library /opt/X11/lib/libX11.dylib;/opt/X11/lib/libXext.dylib
X11_LIB_X11_SOLO:INTERNAL=1
//ADVANCED property for variable: X11_SM_INCLUDE_PATH
X11_SM_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_SM_LIB
X11_SM_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_X11_INCLUDE_PATH
X11_X11_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_X11_LIB
X11_X11_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_XRes_INCLUDE_PATH
X11_XRes_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_XRes_LIB
X11_XRes_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_XShm_INCLUDE_PATH
X11_XShm_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_XSync_INCLUDE_PATH
X11_XSync_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_XTest_INCLUDE_PATH
X11_XTest_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_XTest_LIB
X11_XTest_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xaccessrules_INCLUDE_PATH
X11_Xaccessrules_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xaccessstr_INCLUDE_PATH
X11_Xaccessstr_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xau_INCLUDE_PATH
X11_Xau_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xau_LIB
X11_Xau_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xcomposite_INCLUDE_PATH
X11_Xcomposite_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xcomposite_LIB
X11_Xcomposite_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xcursor_INCLUDE_PATH
X11_Xcursor_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xcursor_LIB
X11_Xcursor_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xdamage_INCLUDE_PATH
X11_Xdamage_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xdamage_LIB
X11_Xdamage_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xdmcp_INCLUDE_PATH
X11_Xdmcp_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xdmcp_LIB
X11_Xdmcp_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xext_LIB
X11_Xext_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xfixes_INCLUDE_PATH
X11_Xfixes_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xfixes_LIB
X11_Xfixes_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xft_INCLUDE_PATH
X11_Xft_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xft_LIB
X11_Xft_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xi_INCLUDE_PATH
X11_Xi_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xi_LIB
X11_Xi_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xinerama_INCLUDE_PATH
X11_Xinerama_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xinerama_LIB
X11_Xinerama_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xinput_INCLUDE_PATH
X11_Xinput_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xinput_LIB
X11_Xinput_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xkb_INCLUDE_PATH
X11_Xkb_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xkbfile_INCLUDE_PATH
X11_Xkbfile_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xkbfile_LIB
X11_Xkbfile_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xkblib_INCLUDE_PATH
X11_Xkblib_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xlib_INCLUDE_PATH
X11_Xlib_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xmu_INCLUDE_PATH
X11_Xmu_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xmu_LIB
X11_Xmu_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xpm_INCLUDE_PATH
X11_Xpm_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xpm_LIB
X11_Xpm_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xrandr_INCLUDE_PATH
X11_Xrandr_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xrandr_LIB
X11_Xrandr_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xrender_INCLUDE_PATH
X11_Xrender_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xrender_LIB
X11_Xrender_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xscreensaver_INCLUDE_PATH
X11_Xscreensaver_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xscreensaver_LIB
X11_Xscreensaver_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xshape_INCLUDE_PATH
X11_Xshape_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xt_INCLUDE_PATH
X11_Xt_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xt_LIB
X11_Xt_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xutil_INCLUDE_PATH
X11_Xutil_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xv_INCLUDE_PATH
X11_Xv_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xv_LIB
X11_Xv_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xxf86misc_LIB
X11_Xxf86misc_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_Xxf86vm_LIB
X11_Xxf86vm_LIB-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_dpms_INCLUDE_PATH
X11_dpms_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_xf86misc_INCLUDE_PATH
X11_xf86misc_INCLUDE_PATH-ADVANCED:INTERNAL=1
//ADVANCED property for variable: X11_xf86vmode_INCLUDE_PATH
X11_xf86vmode_INCLUDE_PATH-ADVANCED:INTERNAL=1
//Result of TRY_COMPILE
_using_libcxx:INTERNAL=FALSE

-------------- next part --------------
_____________________________________
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From matt.mccormick at kitware.com  Fri Nov  6 18:48:09 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 6 Nov 2015 18:48:09 -0500
Subject: [ITK] problems installing ITK 4.8.1 on OS X 10.9.5
In-Reply-To: <CAMj5ekGNhyMqQJ66rcZ83XvJBG1NG+EqLubKqJ9UX+wMF6frtQ@mail.gmail.com>
References: <CAMj5ekGNhyMqQJ66rcZ83XvJBG1NG+EqLubKqJ9UX+wMF6frtQ@mail.gmail.com>
Message-ID: <CALzTN-QOrHdMGu3H6HZM4aG-xtf=1=z8QuQ4X=-GqB2KPZLEEQ@mail.gmail.com>

Hi Amber,

I could could not reproduce the build error with ITK 4.8.1 and VTK
6.3.0 on Mac OSX.  VTK is in my source tree at

  VTK/Common/Core/vtkVersion.h

Is this file present?

If you run

  make VERBOSE=1

is its directory included with a -I flag?

Thanks,
Matt

On Fri, Nov 6, 2015 at 1:38 PM, Amber Simpson <simpsona at gmail.com> wrote:
>
>
> Hi All,
>
> I'm having trouble compiling ITK, specifically itkvtkglue (see below), using
> VTK 6.3.0 and CMake 3.4.0-rc3. CMakeCache.txt is attached. Any suggestions?
>
> Thanks,
> Amber
>
>
> -----------------
>
>
> [ 99%] Built target ITKSpatialFunction-all
>
> [ 99%] Built target itkTestDriver
>
> [ 99%] Built target ITKTestKernel-all
>
> [ 99%] Built target ITKVTK
>
> [ 99%] Built target ITKVTK-all
>
> [ 99%] Built target ITKVideoCore
>
> [ 99%] Built target ITKVideoCore-all
>
> [ 99%] Built target ITKVideoFiltering-all
>
> [100%] Built target ITKVideoIO
>
> [100%] Built target ITKVideoIO-all
>
> [100%] Built target ITKVoronoi-all
>
> [100%] Building CXX object
> Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/QuickView.cxx.o
>
> /Users/simpsonl/Software/ITK-4.8.1/Modules/Bridge/VtkGlue/src/QuickView.cxx:25:10:
> fatal error: 'vtkVersion.h' file not
>
>       found
>
> #include "vtkVersion.h"
>
>          ^
>
> 1 error generated.
>
> make[2]: ***
> [Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/QuickView.cxx.o] Error
> 1
>
> make[1]: *** [Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/all]
> Error 2
>
> make: *** [all] Error 2
>
>
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>

From simpsona at gmail.com  Fri Nov  6 19:48:18 2015
From: simpsona at gmail.com (Amber Simpson)
Date: Fri, 6 Nov 2015 19:48:18 -0500
Subject: [ITK] problems installing ITK 4.8.1 on OS X 10.9.5
In-Reply-To: <CALzTN-QOrHdMGu3H6HZM4aG-xtf=1=z8QuQ4X=-GqB2KPZLEEQ@mail.gmail.com>
References: <CAMj5ekGNhyMqQJ66rcZ83XvJBG1NG+EqLubKqJ9UX+wMF6frtQ@mail.gmail.com>
 <CALzTN-QOrHdMGu3H6HZM4aG-xtf=1=z8QuQ4X=-GqB2KPZLEEQ@mail.gmail.com>
Message-ID: <CAMj5ekHGg9MoYzOC=hUsaQtOsMbqakMmaLpnoWPVsJ+hc_WNSw@mail.gmail.com>

Hi Matt,

The file is present in VTK but the directory is not included in the -l list
in ITK. Related, the incorrect include directory is shown (/include/vtk-6.3
instead of ~/VTKBuild/include/vtk-6.3) in the same listing. I'm not sure
where these are set.

Thanks for your help,

Amber

On Fri, Nov 6, 2015 at 6:48 PM, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Amber,
>
> I could could not reproduce the build error with ITK 4.8.1 and VTK
> 6.3.0 on Mac OSX.  VTK is in my source tree at
>
>   VTK/Common/Core/vtkVersion.h
>
> Is this file present?
>
> If you run
>
>   make VERBOSE=1
>
> is its directory included with a -I flag?
>
> Thanks,
> Matt
>
> On Fri, Nov 6, 2015 at 1:38 PM, Amber Simpson <simpsona at gmail.com> wrote:
> >
> >
> > Hi All,
> >
> > I'm having trouble compiling ITK, specifically itkvtkglue (see below),
> using
> > VTK 6.3.0 and CMake 3.4.0-rc3. CMakeCache.txt is attached. Any
> suggestions?
> >
> > Thanks,
> > Amber
> >
> >
> > -----------------
> >
> >
> > [ 99%] Built target ITKSpatialFunction-all
> >
> > [ 99%] Built target itkTestDriver
> >
> > [ 99%] Built target ITKTestKernel-all
> >
> > [ 99%] Built target ITKVTK
> >
> > [ 99%] Built target ITKVTK-all
> >
> > [ 99%] Built target ITKVideoCore
> >
> > [ 99%] Built target ITKVideoCore-all
> >
> > [ 99%] Built target ITKVideoFiltering-all
> >
> > [100%] Built target ITKVideoIO
> >
> > [100%] Built target ITKVideoIO-all
> >
> > [100%] Built target ITKVoronoi-all
> >
> > [100%] Building CXX object
> > Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/QuickView.cxx.o
> >
> >
> /Users/simpsonl/Software/ITK-4.8.1/Modules/Bridge/VtkGlue/src/QuickView.cxx:25:10:
> > fatal error: 'vtkVersion.h' file not
> >
> >       found
> >
> > #include "vtkVersion.h"
> >
> >          ^
> >
> > 1 error generated.
> >
> > make[2]: ***
> > [Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/QuickView.cxx.o]
> Error
> > 1
> >
> > make[1]: *** [Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/all]
> > Error 2
> >
> > make: *** [all] Error 2
> >
> >
> >
> > _______________________________________________
> > Community mailing list
> > Community at itk.org
> > http://public.kitware.com/mailman/listinfo/community
> >
>
-------------- next part --------------
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From yassminabdallah at gmail.com  Sat Nov  7 02:22:32 2015
From: yassminabdallah at gmail.com (Yassmin)
Date: Sat, 7 Nov 2015 00:22:32 -0700 (MST)
Subject: [ITK] [ITK-users] Compile ITK for iPhone
In-Reply-To: <CALzTN-RRRvu0yPGVCvBFXpcaTWdA8u0DsTQmrGbSU-42NNiDaA@mail.gmail.com>
References: <1446685276695-7588136.post@n2.nabble.com>
 <1446819343470-7588145.post@n2.nabble.com>
 <CALzTN-RRRvu0yPGVCvBFXpcaTWdA8u0DsTQmrGbSU-42NNiDaA@mail.gmail.com>
Message-ID: <1446880952822-7588149.post@n2.nabble.com>

Hello Matt,

Thanks a lot for your reply,

The CMake warning about MacOSX10.10.sdk does not exist solved by,

-First go to
"/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs"
to find out if the SDK is there or not, i found elder version 
MacOSX10.9.sdk. So after run "cmake -GXcode ITK-Source_Dir" and generate the
build files you have to change the CMakeCache.txt  "CMAKE_OSX_SYSROOT:PATH="
to your current SDK version and then run "cmake -GXcode ITK-Source_Dir"
again and the warning won't show.

-The "vnl_math.cxx" generated in the build.

-- But I face another problem with "vnl_math.cxx" when i added the "#define
finite(x) ? ? __inline_isfinited((double)x)" line as mention in the
tutorial,  error with "Expected expression" found and i can't run the
project.

Till now i can't figure out how to solve this "Expected expression" error.





--
View this message in context: http://itk-insight-users.2283740.n2.nabble.com/Compile-ITK-for-iPhone-tp7588136p7588149.html
Sent from the ITK Insight Users mailing list archive at Nabble.com.
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From matt.mccormick at kitware.com  Mon Nov  9 09:28:53 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 9 Nov 2015 09:28:53 -0500
Subject: [ITK] [ITK-dev] Patches for the 4.8.2 release
Message-ID: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>

Hi,

It is time to make the 4.8.2 release. The following patches are new on
the release branch since 4.8.1.  Is there anything missing?

Thanks,
Matt

Bradley Lowekamp (4):
      BUG: Avoid potential exception in itk::Object::UnRegister
      BUG: Avoid null deference in PrintSelf with default construction
      BUG: Use const pointer in Set method for constant ReferenceImage ivar
      BUG: Fix segfault when with empty IsolatedWatershed Threshold range

Davis Vigneault (3):
      COMP: Warnings in itkVTKImageExport when compiling with c++11
      DOC: Expanded Canny Edge Detection Example
      COMP: Warnings in FFTW Classes when compiling with c++11

Eugene Prilepin (1):
      BUG: Fix a template name formation in python wrappings

Hans Johnson (5):
      STYLE: Minor code style issues for MGHIO
      COMP: Update to version for WikiExamples
      ENH: Update Sphinx for ITK 4.8.0
      ENH: Update MGHIO to be shared lib
      BUG: Fix MGHIO to fix write failures

Hyun Jae Kang (4):
      BUG: Fix HDF5 CMake configuration with VS2015
      BUG: Remove std::cout calls from class
      BUG: itkVTKImageIO class does not handle blank lines in VTK file header.
      BUG: Fixed older XCode linking error

Matthew McCormick (8):
      COMP: Do not use C++11 alignas in itkAlignedTypedef.
      COMP: Remove unused argument in ConditionVariableNoThreads.
      DOC: Correct spelling of Continuous.
      COMP: Fix KernelTransform SetFixedParameters argument type.
      STYLE: Use prefix increment operator in ImageBase.
      COMP: Use ITK's pygccxml by correctly setting up the sys.path
      COMP: Set CMP0054 to new.

Michka Popoff (1):
      COMP: Disable incompatible modules when using Python 3 wrapping

Mikhail Isakov (1):
      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From matt.mccormick at kitware.com  Mon Nov  9 09:57:46 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 9 Nov 2015 09:57:46 -0500
Subject: [ITK] [ITK-dev] Patches for the 4.8.2 release
In-Reply-To: <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
Message-ID: <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>

Thanks!  Added.

On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
> We should consider this:
> http://review.source.kitware.com/#/c/20369/
>
> This helps with using VS2015 GUI.
>
>
> On Nov 9, 2015, at 9:28 AM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>
>> Hi,
>>
>> It is time to make the 4.8.2 release. The following patches are new on
>> the release branch since 4.8.1.  Is there anything missing?
>>
>> Thanks,
>> Matt
>>
>> Bradley Lowekamp (4):
>>      BUG: Avoid potential exception in itk::Object::UnRegister
>>      BUG: Avoid null deference in PrintSelf with default construction
>>      BUG: Use const pointer in Set method for constant ReferenceImage ivar
>>      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
>>
>> Davis Vigneault (3):
>>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>>      DOC: Expanded Canny Edge Detection Example
>>      COMP: Warnings in FFTW Classes when compiling with c++11
>>
>> Eugene Prilepin (1):
>>      BUG: Fix a template name formation in python wrappings
>>
>> Hans Johnson (5):
>>      STYLE: Minor code style issues for MGHIO
>>      COMP: Update to version for WikiExamples
>>      ENH: Update Sphinx for ITK 4.8.0
>>      ENH: Update MGHIO to be shared lib
>>      BUG: Fix MGHIO to fix write failures
>>
>> Hyun Jae Kang (4):
>>      BUG: Fix HDF5 CMake configuration with VS2015
>>      BUG: Remove std::cout calls from class
>>      BUG: itkVTKImageIO class does not handle blank lines in VTK file header.
>>      BUG: Fixed older XCode linking error
>>
>> Matthew McCormick (8):
>>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>      DOC: Correct spelling of Continuous.
>>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>      STYLE: Use prefix increment operator in ImageBase.
>>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>      COMP: Set CMP0054 to new.
>>
>> Michka Popoff (1):
>>      COMP: Disable incompatible modules when using Python 3 wrapping
>>
>> Mikhail Isakov (1):
>>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From ribaluigi at gmail.com  Mon Nov  9 10:12:42 2015
From: ribaluigi at gmail.com (Luigi Riba)
Date: Mon, 9 Nov 2015 16:12:42 +0100
Subject: [ITK]  amoeba optimizer
Message-ID: <CAJaJUhO9zcvi6hhPL4W5Hn-r7p4F+bbVbt71eEqk7Zdt8oCz4A@mail.gmail.com>

Dear all,

I am registering a couple of volumes with ITK 4 on windows 7 64 bit.

I am trying to use the AmoebaOptimizerV4.

Unfortunately, the method
optimizer->SetNumberOfIterations(numberOfIterations);
does not work and the registration continues after the numberOfIterations I
choose.
Is this known? Are there other methods in order to stop the registration
process?

Best,

Luigi
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From ribaluigi at gmail.com  Mon Nov  9 10:16:06 2015
From: ribaluigi at gmail.com (Luigi Riba)
Date: Mon, 9 Nov 2015 16:16:06 +0100
Subject: [ITK]  optimizer scales and weights
Message-ID: <CAJaJUhP=pxbAksqjoJ45GaTnOjBsrzHVRrcf1PajOGf9yBEKTg@mail.gmail.com>

Dear all,

I'm working on ITK 4 and, for the moment, I have always payed attention
only to the SetScales method for the optimizer.

Out of curiosity, what is the role of the SetWeights method? What are the
differences between SetWeights and SetScales? Shoud this two methods be
used in conjunction?

Thanks in advance for the help.

Best,
Luigi
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From ribaluigi at gmail.com  Mon Nov  9 10:24:12 2015
From: ribaluigi at gmail.com (Luigi Riba)
Date: Mon, 9 Nov 2015 16:24:12 +0100
Subject: [ITK]  registration - memory concerns
Message-ID: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>

Dear all,

I am registering a couple of volumes with ITK 4 on windows 7 64 bit.

I wrote a code based on the affine transformation, with the mean square
error metric and the RegularStepGradientDescentOptimizerv4. Unfortunately,
the memory usage is pretty high.

I have checked memory consumption with the itkMemoryProbe and, after
looking around on previous mailing list messages I have decided to try with
a gradient free optimizer like the Nelder-Mead one.

So I have rewrote the code using the AmoebaOptimizerV4 and I have continued
monitoring the memory consumption via MemoryProbe. Unfortunately, it seems
that nothing has changed. Is this working as expected? If this is the case,
do you have any suggestion to gave me in order to reduce the memory
consumption of the code?

Thanks in advance for the help.

Best,

Luigi
-------------- next part --------------
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From blowekamp at mail.nih.gov  Mon Nov  9 09:45:45 2015
From: blowekamp at mail.nih.gov (Bradley Lowekamp)
Date: Mon, 09 Nov 2015 09:45:45 -0500
Subject: [ITK] [ITK-dev] Patches for the 4.8.2 release
In-Reply-To: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
Message-ID: <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>

We should consider this:
http://review.source.kitware.com/#/c/20369/

This helps with using VS2015 GUI.


On Nov 9, 2015, at 9:28 AM, Matt McCormick <matt.mccormick at kitware.com> wrote:

> Hi,
> 
> It is time to make the 4.8.2 release. The following patches are new on
> the release branch since 4.8.1.  Is there anything missing?
> 
> Thanks,
> Matt
> 
> Bradley Lowekamp (4):
>      BUG: Avoid potential exception in itk::Object::UnRegister
>      BUG: Avoid null deference in PrintSelf with default construction
>      BUG: Use const pointer in Set method for constant ReferenceImage ivar
>      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
> 
> Davis Vigneault (3):
>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>      DOC: Expanded Canny Edge Detection Example
>      COMP: Warnings in FFTW Classes when compiling with c++11
> 
> Eugene Prilepin (1):
>      BUG: Fix a template name formation in python wrappings
> 
> Hans Johnson (5):
>      STYLE: Minor code style issues for MGHIO
>      COMP: Update to version for WikiExamples
>      ENH: Update Sphinx for ITK 4.8.0
>      ENH: Update MGHIO to be shared lib
>      BUG: Fix MGHIO to fix write failures
> 
> Hyun Jae Kang (4):
>      BUG: Fix HDF5 CMake configuration with VS2015
>      BUG: Remove std::cout calls from class
>      BUG: itkVTKImageIO class does not handle blank lines in VTK file header.
>      BUG: Fixed older XCode linking error
> 
> Matthew McCormick (8):
>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>      COMP: Remove unused argument in ConditionVariableNoThreads.
>      DOC: Correct spelling of Continuous.
>      COMP: Fix KernelTransform SetFixedParameters argument type.
>      STYLE: Use prefix increment operator in ImageBase.
>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>      COMP: Set CMP0054 to new.
> 
> Michka Popoff (1):
>      COMP: Disable incompatible modules when using Python 3 wrapping
> 
> Mikhail Isakov (1):
>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
> _______________________________________________
> Powered by www.kitware.com
> 
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
> 
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
> 
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
> 
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers

_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From dzenanz at gmail.com  Mon Nov  9 10:55:26 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Mon, 9 Nov 2015 10:55:26 -0500
Subject: [ITK] amoeba optimizer
In-Reply-To: <CAJaJUhO9zcvi6hhPL4W5Hn-r7p4F+bbVbt71eEqk7Zdt8oCz4A@mail.gmail.com>
References: <CAJaJUhO9zcvi6hhPL4W5Hn-r7p4F+bbVbt71eEqk7Zdt8oCz4A@mail.gmail.com>
Message-ID: <CAPf2UMT7K4_dPBHS9Kp+Rgymu0WNpD__K1z0J3s3r5i1ov9vpQ@mail.gmail.com>

Hi Luigi,

I think that Amoeba optimizer does not count some initial iterations
towards that limit. I use it for something and set iterations to 200, but
it stops at 216 iterations or something like that. Tracing the code (for
other reasons) I realized that its internal initialization procedure does
some iterations before the main loop.

Regards

On Mon, Nov 9, 2015 at 10:12 AM, Luigi Riba <ribaluigi at gmail.com> wrote:

> Dear all,
>
> I am registering a couple of volumes with ITK 4 on windows 7 64 bit.
>
> I am trying to use the AmoebaOptimizerV4.
>
> Unfortunately, the method
> optimizer->SetNumberOfIterations(numberOfIterations);
> does not work and the registration continues after the numberOfIterations
> I choose.
> Is this known? Are there other methods in order to stop the registration
> process?
>
> Best,
>
> Luigi
>
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
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From ribaluigi at gmail.com  Mon Nov  9 11:05:35 2015
From: ribaluigi at gmail.com (Luigi Riba)
Date: Mon, 9 Nov 2015 17:05:35 +0100
Subject: [ITK] amoeba optimizer
In-Reply-To: <CAPf2UMT7K4_dPBHS9Kp+Rgymu0WNpD__K1z0J3s3r5i1ov9vpQ@mail.gmail.com>
References: <CAJaJUhO9zcvi6hhPL4W5Hn-r7p4F+bbVbt71eEqk7Zdt8oCz4A@mail.gmail.com>
 <CAPf2UMT7K4_dPBHS9Kp+Rgymu0WNpD__K1z0J3s3r5i1ov9vpQ@mail.gmail.com>
Message-ID: <CAJaJUhO=9CHpX07oEa8--vVwrG=V+Rb2Cwz1jA04NzR==1rDcA@mail.gmail.com>

Hi D?enan,

thank you very much for your quick and informative reply.

This could explain my problem. In fact, my registration process took 28
iteration to complete instead of 10 and all of them took almost the same
time. Nevertheless, the optimizer knew the maximum number of iterations. In
fact, this is the message I've got at the end:
Optimizer stop condition: AmoebaOptimizerv4: Maximum number of iterations
exceeded. Number of iterations is 10

By the way, I think it could be worth to add this info to the
AmoebaOptimizer page description.

Best,

Luigi


2015-11-09 16:55 GMT+01:00 D?enan Zuki? <dzenanz at gmail.com>:

> Hi Luigi,
>
> I think that Amoeba optimizer does not count some initial iterations
> towards that limit. I use it for something and set iterations to 200, but
> it stops at 216 iterations or something like that. Tracing the code (for
> other reasons) I realized that its internal initialization procedure does
> some iterations before the main loop.
>
> Regards
>
> On Mon, Nov 9, 2015 at 10:12 AM, Luigi Riba <ribaluigi at gmail.com> wrote:
>
>> Dear all,
>>
>> I am registering a couple of volumes with ITK 4 on windows 7 64 bit.
>>
>> I am trying to use the AmoebaOptimizerV4.
>>
>> Unfortunately, the method
>> optimizer->SetNumberOfIterations(numberOfIterations);
>> does not work and the registration continues after the numberOfIterations
>> I choose.
>> Is this known? Are there other methods in order to stop the registration
>> process?
>>
>> Best,
>>
>> Luigi
>>
>>
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>>
>>
>
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From matt.mccormick at kitware.com  Mon Nov  9 11:18:10 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 9 Nov 2015 11:18:10 -0500
Subject: [ITK] optimizer scales and weights
In-Reply-To: <CAJaJUhP=pxbAksqjoJ45GaTnOjBsrzHVRrcf1PajOGf9yBEKTg@mail.gmail.com>
References: <CAJaJUhP=pxbAksqjoJ45GaTnOjBsrzHVRrcf1PajOGf9yBEKTg@mail.gmail.com>
Message-ID: <CALzTN-QdGp=PwQwMH6J8fTZR993c=meszzEXF1O4N+zvk1r4bg@mail.gmail.com>

Hi Luigi,

The SetScales and SetWeights have different purposes.  SetScales is
used to account for different parameters having a different impact on
motion -- for example, translation versus rotation parameters.
SetWeights can be used to keep one parameter constant, etc.  A more
detailed description can be found in the class documentation here:

  http://www.itk.org/Insight/Doxygen/html/classitk_1_1ObjectToObjectOptimizerBaseTemplate.html

HTH,
Matt

On Mon, Nov 9, 2015 at 10:16 AM, Luigi Riba <ribaluigi at gmail.com> wrote:
> Dear all,
>
> I'm working on ITK 4 and, for the moment, I have always payed attention only
> to the SetScales method for the optimizer.
>
> Out of curiosity, what is the role of the SetWeights method? What are the
> differences between SetWeights and SetScales? Shoud this two methods be used
> in conjunction?
>
> Thanks in advance for the help.
>
> Best,
> Luigi
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>

From matt.mccormick at kitware.com  Mon Nov  9 11:23:39 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 9 Nov 2015 11:23:39 -0500
Subject: [ITK] registration - memory concerns
In-Reply-To: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
Message-ID: <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>

Hi Luigi,

The type of optimizer should not have too large of an impact on memory
consumption.  Using a gradient-free optimizer may help slightly, but
try changing the pixel type of the input images or, if possible, the
parameter type of the transformation, from double to float.

HTH,
Matt

On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <ribaluigi at gmail.com> wrote:
> Dear all,
>
> I am registering a couple of volumes with ITK 4 on windows 7 64 bit.
>
> I wrote a code based on the affine transformation, with the mean square
> error metric and the RegularStepGradientDescentOptimizerv4. Unfortunately,
> the memory usage is pretty high.
>
> I have checked memory consumption with the itkMemoryProbe and, after looking
> around on previous mailing list messages I have decided to try with a
> gradient free optimizer like the Nelder-Mead one.
>
> So I have rewrote the code using the AmoebaOptimizerV4 and I have continued
> monitoring the memory consumption via MemoryProbe. Unfortunately, it seems
> that nothing has changed. Is this working as expected? If this is the case,
> do you have any suggestion to gave me in order to reduce the memory
> consumption of the code?
>
> Thanks in advance for the help.
>
> Best,
>
> Luigi
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>

From ribaluigi at gmail.com  Mon Nov  9 11:26:11 2015
From: ribaluigi at gmail.com (Luigi Riba)
Date: Mon, 9 Nov 2015 17:26:11 +0100
Subject: [ITK] registration - memory concerns
In-Reply-To: <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
 <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
Message-ID: <CAJaJUhN_Yts32Z5sg8W+mmKBpFge7obL-M-9EN3mZKqyk_+h6Q@mail.gmail.com>

Dear Matt,

thank you very much for the quick and informative reply.

I'll try your suggestion of changing the transformation parameters from
double to float.

Best,

Luigi

2015-11-09 17:23 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:

> Hi Luigi,
>
> The type of optimizer should not have too large of an impact on memory
> consumption.  Using a gradient-free optimizer may help slightly, but
> try changing the pixel type of the input images or, if possible, the
> parameter type of the transformation, from double to float.
>
> HTH,
> Matt
>
> On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <ribaluigi at gmail.com> wrote:
> > Dear all,
> >
> > I am registering a couple of volumes with ITK 4 on windows 7 64 bit.
> >
> > I wrote a code based on the affine transformation, with the mean square
> > error metric and the RegularStepGradientDescentOptimizerv4.
> Unfortunately,
> > the memory usage is pretty high.
> >
> > I have checked memory consumption with the itkMemoryProbe and, after
> looking
> > around on previous mailing list messages I have decided to try with a
> > gradient free optimizer like the Nelder-Mead one.
> >
> > So I have rewrote the code using the AmoebaOptimizerV4 and I have
> continued
> > monitoring the memory consumption via MemoryProbe. Unfortunately, it
> seems
> > that nothing has changed. Is this working as expected? If this is the
> case,
> > do you have any suggestion to gave me in order to reduce the memory
> > consumption of the code?
> >
> > Thanks in advance for the help.
> >
> > Best,
> >
> > Luigi
> >
> > _______________________________________________
> > Community mailing list
> > Community at itk.org
> > http://public.kitware.com/mailman/listinfo/community
> >
>
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From ribaluigi at gmail.com  Mon Nov  9 11:50:11 2015
From: ribaluigi at gmail.com (Luigi Riba)
Date: Mon, 9 Nov 2015 17:50:11 +0100
Subject: [ITK] optimizer scales and weights
In-Reply-To: <CALzTN-QdGp=PwQwMH6J8fTZR993c=meszzEXF1O4N+zvk1r4bg@mail.gmail.com>
References: <CAJaJUhP=pxbAksqjoJ45GaTnOjBsrzHVRrcf1PajOGf9yBEKTg@mail.gmail.com>
 <CALzTN-QdGp=PwQwMH6J8fTZR993c=meszzEXF1O4N+zvk1r4bg@mail.gmail.com>
Message-ID: <CAJaJUhPiiM7+s9ZB2-pPuT-OBtu083oyTXRL50zi1zW4Ro7UBA@mail.gmail.com>

Dear Matt,

thank you very much for the quick reply.

If I've got it correctly the scale parameters tell the optimizer in which
order of magnitude should move in every direction, while the weights are
just used in order to privilege convergence according to a certain number
of sub parameters.

I would rather ask you another question about the scales.  In the
ITK software guide "3.18.2 General heuristics for parameters" it is
suggested to  scale the translation parameters of the optimizer in he
following way
// optimizerScales[9] = 1.0 / (10 * movingSpacing[0] * movingSize[0])
// optimizerScales[10] = 1.0 / (10 * movingSpacing[1] * movingSize[1])
// optimizerScales[11] = 1.0 / (10 * movingSpacing[2] * movingSize[2])

Is this what is done by the SetScaleEstimator() method?

Best,

Luigi



2015-11-09 17:18 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:

> Hi Luigi,
>
> The SetScales and SetWeights have different purposes.  SetScales is
> used to account for different parameters having a different impact on
> motion -- for example, translation versus rotation parameters.
> SetWeights can be used to keep one parameter constant, etc.  A more
> detailed description can be found in the class documentation here:
>
>
> http://www.itk.org/Insight/Doxygen/html/classitk_1_1ObjectToObjectOptimizerBaseTemplate.html
>
> HTH,
> Matt
>
> On Mon, Nov 9, 2015 at 10:16 AM, Luigi Riba <ribaluigi at gmail.com> wrote:
> > Dear all,
> >
> > I'm working on ITK 4 and, for the moment, I have always payed attention
> only
> > to the SetScales method for the optimizer.
> >
> > Out of curiosity, what is the role of the SetWeights method? What are the
> > differences between SetWeights and SetScales? Shoud this two methods be
> used
> > in conjunction?
> >
> > Thanks in advance for the help.
> >
> > Best,
> > Luigi
> >
> > _______________________________________________
> > Community mailing list
> > Community at itk.org
> > http://public.kitware.com/mailman/listinfo/community
> >
>
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From blowekamp at mail.nih.gov  Mon Nov  9 11:27:42 2015
From: blowekamp at mail.nih.gov (Bradley Lowekamp)
Date: Mon, 09 Nov 2015 11:27:42 -0500
Subject: [ITK] amoeba optimizer
In-Reply-To: <CAJaJUhO=9CHpX07oEa8--vVwrG=V+Rb2Cwz1jA04NzR==1rDcA@mail.gmail.com>
References: <CAJaJUhO9zcvi6hhPL4W5Hn-r7p4F+bbVbt71eEqk7Zdt8oCz4A@mail.gmail.com>
 <CAPf2UMT7K4_dPBHS9Kp+Rgymu0WNpD__K1z0J3s3r5i1ov9vpQ@mail.gmail.com>
 <CAJaJUhO=9CHpX07oEa8--vVwrG=V+Rb2Cwz1jA04NzR==1rDcA@mail.gmail.com>
Message-ID: <85F3A691-3DE5-4B2B-A8F5-DC57DD4EB329@mail.nih.gov>

Hello,

I think there is some confusion between number of function evaluations and the current iteration with in the ITK to VNL wrapping. As I recall the iteration event occurs during an evaluation, not necessarily when the algorithm changed iteration.

Brad

On Nov 9, 2015, at 11:05 AM, Luigi Riba <ribaluigi at gmail.com> wrote:

> Hi D?enan,
> 
> thank you very much for your quick and informative reply. 
> 
> This could explain my problem. In fact, my registration process took 28 iteration to complete instead of 10 and all of them took almost the same time. Nevertheless, the optimizer knew the maximum number of iterations. In fact, this is the message I've got at the end:
> Optimizer stop condition: AmoebaOptimizerv4: Maximum number of iterations exceeded. Number of iterations is 10
> 
> By the way, I think it could be worth to add this info to the AmoebaOptimizer page description.
> 
> Best,
> 
> Luigi
> 
> 
> 2015-11-09 16:55 GMT+01:00 D?enan Zuki? <dzenanz at gmail.com>:
> Hi Luigi,
> 
> I think that Amoeba optimizer does not count some initial iterations towards that limit. I use it for something and set iterations to 200, but it stops at 216 iterations or something like that. Tracing the code (for other reasons) I realized that its internal initialization procedure does some iterations before the main loop.
> 
> Regards
> 
> On Mon, Nov 9, 2015 at 10:12 AM, Luigi Riba <ribaluigi at gmail.com> wrote:
> Dear all,
> 
> I am registering a couple of volumes with ITK 4 on windows 7 64 bit.
> 
> I am trying to use the AmoebaOptimizerV4.
> 
> Unfortunately, the method 
> optimizer->SetNumberOfIterations(numberOfIterations);
> does not work and the registration continues after the numberOfIterations I choose.
> Is this known? Are there other methods in order to stop the registration process?
> 
> Best,
> 
> Luigi
> 
> 
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
> 
> 
> 
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community

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From matt.mccormick at kitware.com  Mon Nov  9 12:52:51 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 9 Nov 2015 12:52:51 -0500
Subject: [ITK] optimizer scales and weights
In-Reply-To: <CAJaJUhPiiM7+s9ZB2-pPuT-OBtu083oyTXRL50zi1zW4Ro7UBA@mail.gmail.com>
References: <CAJaJUhP=pxbAksqjoJ45GaTnOjBsrzHVRrcf1PajOGf9yBEKTg@mail.gmail.com>
 <CALzTN-QdGp=PwQwMH6J8fTZR993c=meszzEXF1O4N+zvk1r4bg@mail.gmail.com>
 <CAJaJUhPiiM7+s9ZB2-pPuT-OBtu083oyTXRL50zi1zW4Ro7UBA@mail.gmail.com>
Message-ID: <CALzTN-TSOLWRch0=eT3j4crOfvAmTWE0nFgbZE9icM6Uiuyffw@mail.gmail.com>

Hi Luigi,

> If I've got it correctly the scale parameters tell the optimizer in which
> order of magnitude should move in every direction, while the weights are
> just used in order to privilege convergence according to a certain number of
> sub parameters.

Yes!


> I would rather ask you another question about the scales.  In the ITK
> software guide "3.18.2 General heuristics for parameters" it is suggested to
> scale the translation parameters of the optimizer in he following way
> // optimizerScales[9] = 1.0 / (10 * movingSpacing[0] * movingSize[0])
> // optimizerScales[10] = 1.0 / (10 * movingSpacing[1] * movingSize[1])
> // optimizerScales[11] = 1.0 / (10 * movingSpacing[2] * movingSize[2])
>
> Is this what is done by the SetScaleEstimator() method?

There are a few options for the ScalesEstimator; see the inheritance
diagram here:

  http://www.itk.org/Insight/Doxygen/html/classitk_1_1RegistrationParameterScalesEstimator.html

which basically follow the Software Guide recommendation, but they are
better in that they are more automatic, sophisticated, and
data-driven.

Thanks,
Matt

From skalexander at gmail.com  Mon Nov  9 15:18:40 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Mon, 09 Nov 2015 20:18:40 +0000
Subject: [ITK] [ITK-dev] Patches for the 4.8.2 release
In-Reply-To: <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
Message-ID: <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>

We found this today (patch attached).   If 4.8.2 is right around the
corner, can you consider it for inclusion.  If time isn't so short, I'll
submit the usual way....

cheers,
Simon


On Mon, 9 Nov 2015 at 09:57 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Thanks!  Added.
>
> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp <blowekamp at mail.nih.gov>
> wrote:
> > We should consider this:
> > http://review.source.kitware.com/#/c/20369/
> >
> > This helps with using VS2015 GUI.
> >
> >
> > On Nov 9, 2015, at 9:28 AM, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
> >
> >> Hi,
> >>
> >> It is time to make the 4.8.2 release. The following patches are new on
> >> the release branch since 4.8.1.  Is there anything missing?
> >>
> >> Thanks,
> >> Matt
> >>
> >> Bradley Lowekamp (4):
> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >>      BUG: Avoid null deference in PrintSelf with default construction
> >>      BUG: Use const pointer in Set method for constant ReferenceImage
> ivar
> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
> >>
> >> Davis Vigneault (3):
> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
> >>      DOC: Expanded Canny Edge Detection Example
> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >>
> >> Eugene Prilepin (1):
> >>      BUG: Fix a template name formation in python wrappings
> >>
> >> Hans Johnson (5):
> >>      STYLE: Minor code style issues for MGHIO
> >>      COMP: Update to version for WikiExamples
> >>      ENH: Update Sphinx for ITK 4.8.0
> >>      ENH: Update MGHIO to be shared lib
> >>      BUG: Fix MGHIO to fix write failures
> >>
> >> Hyun Jae Kang (4):
> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >>      BUG: Remove std::cout calls from class
> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> header.
> >>      BUG: Fixed older XCode linking error
> >>
> >> Matthew McCormick (8):
> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >>      DOC: Correct spelling of Continuous.
> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
> >>      STYLE: Use prefix increment operator in ImageBase.
> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
> >>      COMP: Set CMP0054 to new.
> >>
> >> Michka Popoff (1):
> >>      COMP: Disable incompatible modules when using Python 3 wrapping
> >>
> >> Mikhail Isakov (1):
> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
> >> _______________________________________________
> >> Powered by www.kitware.com
> >>
> >> Visit other Kitware open-source projects at
> >> http://www.kitware.com/opensource/opensource.html
> >>
> >> Kitware offers ITK Training Courses, for more information visit:
> >> http://kitware.com/products/protraining.php
> >>
> >> Please keep messages on-topic and check the ITK FAQ at:
> >> http://www.itk.org/Wiki/ITK_FAQ
> >>
> >> Follow this link to subscribe/unsubscribe:
> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
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From dzenanz at gmail.com  Mon Nov  9 15:54:04 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Mon, 9 Nov 2015 15:54:04 -0500
Subject: [ITK] [ITK-dev]   Patches for the 4.8.2 release
In-Reply-To: <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
Message-ID: <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>

Better submit the usual way. I doubt Matt will include it without the usual
testing. Add me and Matt as reviewers.

Regards,
D?enan

On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander <skalexander at gmail.com>
wrote:

> We found this today (patch attached).   If 4.8.2 is right around the
> corner, can you consider it for inclusion.  If time isn't so short, I'll
> submit the usual way....
>
> cheers,
> Simon
>
>
>
> On Mon, 9 Nov 2015 at 09:57 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>
>> Thanks!  Added.
>>
>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp <blowekamp at mail.nih.gov>
>> wrote:
>> > We should consider this:
>> > http://review.source.kitware.com/#/c/20369/
>> >
>> > This helps with using VS2015 GUI.
>> >
>> >
>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick <matt.mccormick at kitware.com>
>> wrote:
>> >
>> >> Hi,
>> >>
>> >> It is time to make the 4.8.2 release. The following patches are new on
>> >> the release branch since 4.8.1.  Is there anything missing?
>> >>
>> >> Thanks,
>> >> Matt
>> >>
>> >> Bradley Lowekamp (4):
>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >>      BUG: Avoid null deference in PrintSelf with default construction
>> >>      BUG: Use const pointer in Set method for constant ReferenceImage
>> ivar
>> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>> range
>> >>
>> >> Davis Vigneault (3):
>> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>> >>      DOC: Expanded Canny Edge Detection Example
>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >>
>> >> Eugene Prilepin (1):
>> >>      BUG: Fix a template name formation in python wrappings
>> >>
>> >> Hans Johnson (5):
>> >>      STYLE: Minor code style issues for MGHIO
>> >>      COMP: Update to version for WikiExamples
>> >>      ENH: Update Sphinx for ITK 4.8.0
>> >>      ENH: Update MGHIO to be shared lib
>> >>      BUG: Fix MGHIO to fix write failures
>> >>
>> >> Hyun Jae Kang (4):
>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>> >>      BUG: Remove std::cout calls from class
>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
>> header.
>> >>      BUG: Fixed older XCode linking error
>> >>
>> >> Matthew McCormick (8):
>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >>      DOC: Correct spelling of Continuous.
>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>> >>      STYLE: Use prefix increment operator in ImageBase.
>> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >>      COMP: Set CMP0054 to new.
>> >>
>> >> Michka Popoff (1):
>> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>> >>
>> >> Mikhail Isakov (1):
>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
>> >> _______________________________________________
>> >> Powered by www.kitware.com
>> >>
>> >> Visit other Kitware open-source projects at
>> >> http://www.kitware.com/opensource/opensource.html
>> >>
>> >> Kitware offers ITK Training Courses, for more information visit:
>> >> http://kitware.com/products/protraining.php
>> >>
>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >>
>> >> Follow this link to subscribe/unsubscribe:
>> >> http://public.kitware.com/mailman/listinfo/insight-developers
>> >
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>>
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
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_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
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Please keep messages on-topic and check the ITK FAQ at:
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From matt.mccormick at kitware.com  Mon Nov  9 16:19:05 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 9 Nov 2015 16:19:05 -0500
Subject: [ITK] [ITK-dev]   Patches for the 4.8.2 release
In-Reply-To: <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
Message-ID: <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>

Thanks for the patch, Simon! Yes, we can wait until this patch is
merged to make the release. As Dzenan recommends, please submit the
patch to Gerrit with a verification for
itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.

Thanks,
Matt

On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:
> Better submit the usual way. I doubt Matt will include it without the usual
> testing. Add me and Matt as reviewers.
>
> Regards,
> D?enan
>
> On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
>>
>> We found this today (patch attached).   If 4.8.2 is right around the
>> corner, can you consider it for inclusion.  If time isn't so short, I'll
>> submit the usual way....
>>
>> cheers,
>> Simon
>>
>>
>>
>> On Mon, 9 Nov 2015 at 09:57 Matt McCormick <matt.mccormick at kitware.com>
>> wrote:
>>>
>>> Thanks!  Added.
>>>
>>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp <blowekamp at mail.nih.gov>
>>> wrote:
>>> > We should consider this:
>>> > http://review.source.kitware.com/#/c/20369/
>>> >
>>> > This helps with using VS2015 GUI.
>>> >
>>> >
>>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick <matt.mccormick at kitware.com>
>>> > wrote:
>>> >
>>> >> Hi,
>>> >>
>>> >> It is time to make the 4.8.2 release. The following patches are new on
>>> >> the release branch since 4.8.1.  Is there anything missing?
>>> >>
>>> >> Thanks,
>>> >> Matt
>>> >>
>>> >> Bradley Lowekamp (4):
>>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>> >>      BUG: Avoid null deference in PrintSelf with default construction
>>> >>      BUG: Use const pointer in Set method for constant ReferenceImage
>>> >> ivar
>>> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>>> >> range
>>> >>
>>> >> Davis Vigneault (3):
>>> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>>> >>      DOC: Expanded Canny Edge Detection Example
>>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>> >>
>>> >> Eugene Prilepin (1):
>>> >>      BUG: Fix a template name formation in python wrappings
>>> >>
>>> >> Hans Johnson (5):
>>> >>      STYLE: Minor code style issues for MGHIO
>>> >>      COMP: Update to version for WikiExamples
>>> >>      ENH: Update Sphinx for ITK 4.8.0
>>> >>      ENH: Update MGHIO to be shared lib
>>> >>      BUG: Fix MGHIO to fix write failures
>>> >>
>>> >> Hyun Jae Kang (4):
>>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>> >>      BUG: Remove std::cout calls from class
>>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
>>> >> header.
>>> >>      BUG: Fixed older XCode linking error
>>> >>
>>> >> Matthew McCormick (8):
>>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>> >>      DOC: Correct spelling of Continuous.
>>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>> >>      STYLE: Use prefix increment operator in ImageBase.
>>> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>> >>      COMP: Set CMP0054 to new.
>>> >>
>>> >> Michka Popoff (1):
>>> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>>> >>
>>> >> Mikhail Isakov (1):
>>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
>>> >> image
>>> >> _______________________________________________
>>> >> Powered by www.kitware.com
>>> >>
>>> >> Visit other Kitware open-source projects at
>>> >> http://www.kitware.com/opensource/opensource.html
>>> >>
>>> >> Kitware offers ITK Training Courses, for more information visit:
>>> >> http://kitware.com/products/protraining.php
>>> >>
>>> >> Please keep messages on-topic and check the ITK FAQ at:
>>> >> http://www.itk.org/Wiki/ITK_FAQ
>>> >>
>>> >> Follow this link to subscribe/unsubscribe:
>>> >> http://public.kitware.com/mailman/listinfo/insight-developers
>>> >
>>> _______________________________________________
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://kitware.com/products/protraining.php
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>
>>
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>>
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>>
>
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From skalexander at gmail.com  Mon Nov  9 16:40:40 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Mon, 09 Nov 2015 21:40:40 +0000
Subject: [ITK] [ITK-dev]   Patches for the 4.8.2 release
In-Reply-To: <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
Message-ID: <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>

Ok, I'll dig up my notes on how to do that and submit it shortly. Should
this be done against trunk or a release branch ?

On Mon, 9 Nov 2015 at 16:19 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Thanks for the patch, Simon! Yes, we can wait until this patch is
> merged to make the release. As Dzenan recommends, please submit the
> patch to Gerrit with a verification for
> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
>
> Thanks,
> Matt
>
> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:
> > Better submit the usual way. I doubt Matt will include it without the
> usual
> > testing. Add me and Matt as reviewers.
> >
> > Regards,
> > D?enan
> >
> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander <skalexander at gmail.com>
> > wrote:
> >>
> >> We found this today (patch attached).   If 4.8.2 is right around the
> >> corner, can you consider it for inclusion.  If time isn't so short, I'll
> >> submit the usual way....
> >>
> >> cheers,
> >> Simon
> >>
> >>
> >>
> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick <matt.mccormick at kitware.com>
> >> wrote:
> >>>
> >>> Thanks!  Added.
> >>>
> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp <
> blowekamp at mail.nih.gov>
> >>> wrote:
> >>> > We should consider this:
> >>> > http://review.source.kitware.com/#/c/20369/
> >>> >
> >>> > This helps with using VS2015 GUI.
> >>> >
> >>> >
> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick <
> matt.mccormick at kitware.com>
> >>> > wrote:
> >>> >
> >>> >> Hi,
> >>> >>
> >>> >> It is time to make the 4.8.2 release. The following patches are new
> on
> >>> >> the release branch since 4.8.1.  Is there anything missing?
> >>> >>
> >>> >> Thanks,
> >>> >> Matt
> >>> >>
> >>> >> Bradley Lowekamp (4):
> >>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >>> >>      BUG: Avoid null deference in PrintSelf with default
> construction
> >>> >>      BUG: Use const pointer in Set method for constant
> ReferenceImage
> >>> >> ivar
> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
> >>> >> range
> >>> >>
> >>> >> Davis Vigneault (3):
> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
> >>> >>      DOC: Expanded Canny Edge Detection Example
> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >>> >>
> >>> >> Eugene Prilepin (1):
> >>> >>      BUG: Fix a template name formation in python wrappings
> >>> >>
> >>> >> Hans Johnson (5):
> >>> >>      STYLE: Minor code style issues for MGHIO
> >>> >>      COMP: Update to version for WikiExamples
> >>> >>      ENH: Update Sphinx for ITK 4.8.0
> >>> >>      ENH: Update MGHIO to be shared lib
> >>> >>      BUG: Fix MGHIO to fix write failures
> >>> >>
> >>> >> Hyun Jae Kang (4):
> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >>> >>      BUG: Remove std::cout calls from class
> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
> file
> >>> >> header.
> >>> >>      BUG: Fixed older XCode linking error
> >>> >>
> >>> >> Matthew McCormick (8):
> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >>> >>      DOC: Correct spelling of Continuous.
> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
> >>> >>      STYLE: Use prefix increment operator in ImageBase.
> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
> >>> >>      COMP: Set CMP0054 to new.
> >>> >>
> >>> >> Michka Popoff (1):
> >>> >>      COMP: Disable incompatible modules when using Python 3 wrapping
> >>> >>
> >>> >> Mikhail Isakov (1):
> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
> >>> >> image
> >>> >> _______________________________________________
> >>> >> Powered by www.kitware.com
> >>> >>
> >>> >> Visit other Kitware open-source projects at
> >>> >> http://www.kitware.com/opensource/opensource.html
> >>> >>
> >>> >> Kitware offers ITK Training Courses, for more information visit:
> >>> >> http://kitware.com/products/protraining.php
> >>> >>
> >>> >> Please keep messages on-topic and check the ITK FAQ at:
> >>> >> http://www.itk.org/Wiki/ITK_FAQ
> >>> >>
> >>> >> Follow this link to subscribe/unsubscribe:
> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >>> >
> >>> _______________________________________________
> >>> Powered by www.kitware.com
> >>>
> >>> Visit other Kitware open-source projects at
> >>> http://www.kitware.com/opensource/opensource.html
> >>>
> >>> Kitware offers ITK Training Courses, for more information visit:
> >>> http://kitware.com/products/protraining.php
> >>>
> >>> Please keep messages on-topic and check the ITK FAQ at:
> >>> http://www.itk.org/Wiki/ITK_FAQ
> >>>
> >>> Follow this link to subscribe/unsubscribe:
> >>> http://public.kitware.com/mailman/listinfo/insight-developers
> >>
> >>
> >> _______________________________________________
> >> Powered by www.kitware.com
> >>
> >> Visit other Kitware open-source projects at
> >> http://www.kitware.com/opensource/opensource.html
> >>
> >> Kitware offers ITK Training Courses, for more information visit:
> >> http://kitware.com/products/protraining.php
> >>
> >> Please keep messages on-topic and check the ITK FAQ at:
> >> http://www.itk.org/Wiki/ITK_FAQ
> >>
> >> Follow this link to subscribe/unsubscribe:
> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >>
> >> _______________________________________________
> >> Community mailing list
> >> Community at itk.org
> >> http://public.kitware.com/mailman/listinfo/community
> >>
> >
>
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_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From matt.mccormick at kitware.com  Mon Nov  9 17:08:01 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 9 Nov 2015 17:08:01 -0500
Subject: [ITK] [ITK-dev]   Patches for the 4.8.2 release
In-Reply-To: <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
Message-ID: <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>

Great!

Instructions can be found here:

  http://www.itk.org/Wiki/ITK/Git

Please branch off of the "release" branch.

Thanks,
Matt

On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander <skalexander at gmail.com> wrote:
> Ok, I'll dig up my notes on how to do that and submit it shortly. Should
> this be done against trunk or a release branch ?
>
> On Mon, 9 Nov 2015 at 16:19 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Thanks for the patch, Simon! Yes, we can wait until this patch is
>> merged to make the release. As Dzenan recommends, please submit the
>> patch to Gerrit with a verification for
>> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
>>
>> Thanks,
>> Matt
>>
>> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:
>> > Better submit the usual way. I doubt Matt will include it without the
>> > usual
>> > testing. Add me and Matt as reviewers.
>> >
>> > Regards,
>> > D?enan
>> >
>> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander <skalexander at gmail.com>
>> > wrote:
>> >>
>> >> We found this today (patch attached).   If 4.8.2 is right around the
>> >> corner, can you consider it for inclusion.  If time isn't so short,
>> >> I'll
>> >> submit the usual way....
>> >>
>> >> cheers,
>> >> Simon
>> >>
>> >>
>> >>
>> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick <matt.mccormick at kitware.com>
>> >> wrote:
>> >>>
>> >>> Thanks!  Added.
>> >>>
>> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
>> >>> <blowekamp at mail.nih.gov>
>> >>> wrote:
>> >>> > We should consider this:
>> >>> > http://review.source.kitware.com/#/c/20369/
>> >>> >
>> >>> > This helps with using VS2015 GUI.
>> >>> >
>> >>> >
>> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
>> >>> > <matt.mccormick at kitware.com>
>> >>> > wrote:
>> >>> >
>> >>> >> Hi,
>> >>> >>
>> >>> >> It is time to make the 4.8.2 release. The following patches are new
>> >>> >> on
>> >>> >> the release branch since 4.8.1.  Is there anything missing?
>> >>> >>
>> >>> >> Thanks,
>> >>> >> Matt
>> >>> >>
>> >>> >> Bradley Lowekamp (4):
>> >>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >>> >>      BUG: Avoid null deference in PrintSelf with default
>> >>> >> construction
>> >>> >>      BUG: Use const pointer in Set method for constant
>> >>> >> ReferenceImage
>> >>> >> ivar
>> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>> >>> >> range
>> >>> >>
>> >>> >> Davis Vigneault (3):
>> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>> >>> >>      DOC: Expanded Canny Edge Detection Example
>> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >>> >>
>> >>> >> Eugene Prilepin (1):
>> >>> >>      BUG: Fix a template name formation in python wrappings
>> >>> >>
>> >>> >> Hans Johnson (5):
>> >>> >>      STYLE: Minor code style issues for MGHIO
>> >>> >>      COMP: Update to version for WikiExamples
>> >>> >>      ENH: Update Sphinx for ITK 4.8.0
>> >>> >>      ENH: Update MGHIO to be shared lib
>> >>> >>      BUG: Fix MGHIO to fix write failures
>> >>> >>
>> >>> >> Hyun Jae Kang (4):
>> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>> >>> >>      BUG: Remove std::cout calls from class
>> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>> >>> >> file
>> >>> >> header.
>> >>> >>      BUG: Fixed older XCode linking error
>> >>> >>
>> >>> >> Matthew McCormick (8):
>> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >>> >>      DOC: Correct spelling of Continuous.
>> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>> >>> >>      STYLE: Use prefix increment operator in ImageBase.
>> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >>> >>      COMP: Set CMP0054 to new.
>> >>> >>
>> >>> >> Michka Popoff (1):
>> >>> >>      COMP: Disable incompatible modules when using Python 3
>> >>> >> wrapping
>> >>> >>
>> >>> >> Mikhail Isakov (1):
>> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
>> >>> >> image
>> >>> >> _______________________________________________
>> >>> >> Powered by www.kitware.com
>> >>> >>
>> >>> >> Visit other Kitware open-source projects at
>> >>> >> http://www.kitware.com/opensource/opensource.html
>> >>> >>
>> >>> >> Kitware offers ITK Training Courses, for more information visit:
>> >>> >> http://kitware.com/products/protraining.php
>> >>> >>
>> >>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >>> >>
>> >>> >> Follow this link to subscribe/unsubscribe:
>> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
>> >>> >
>> >>> _______________________________________________
>> >>> Powered by www.kitware.com
>> >>>
>> >>> Visit other Kitware open-source projects at
>> >>> http://www.kitware.com/opensource/opensource.html
>> >>>
>> >>> Kitware offers ITK Training Courses, for more information visit:
>> >>> http://kitware.com/products/protraining.php
>> >>>
>> >>> Please keep messages on-topic and check the ITK FAQ at:
>> >>> http://www.itk.org/Wiki/ITK_FAQ
>> >>>
>> >>> Follow this link to subscribe/unsubscribe:
>> >>> http://public.kitware.com/mailman/listinfo/insight-developers
>> >>
>> >>
>> >> _______________________________________________
>> >> Powered by www.kitware.com
>> >>
>> >> Visit other Kitware open-source projects at
>> >> http://www.kitware.com/opensource/opensource.html
>> >>
>> >> Kitware offers ITK Training Courses, for more information visit:
>> >> http://kitware.com/products/protraining.php
>> >>
>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >>
>> >> Follow this link to subscribe/unsubscribe:
>> >> http://public.kitware.com/mailman/listinfo/insight-developers
>> >>
>> >> _______________________________________________
>> >> Community mailing list
>> >> Community at itk.org
>> >> http://public.kitware.com/mailman/listinfo/community
>> >>
>> >
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From skalexander at gmail.com  Mon Nov  9 17:16:44 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Mon, 09 Nov 2015 22:16:44 +0000
Subject: [ITK] [ITK-dev]   Patches for the 4.8.2 release
In-Reply-To: <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
Message-ID: <CAJFNcCQFK9HGv0wO7+9zK_xZqjRNJD6nCr37GnCgVoC2jheiPw@mail.gmail.com>

Ok, I'll try and do this tomorrow AM.

Unless I'm missing something, currently the test code does not test the
"closest point" output at all - if we are to add a useful case we'll have
to construct an example where the correct set of of barycentric co-ords
exist to exercise that branch.

On Mon, 9 Nov 2015 at 17:08 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Great!
>
> Instructions can be found here:
>
>   http://www.itk.org/Wiki/ITK/Git
>
> Please branch off of the "release" branch.
>
> Thanks,
> Matt
>
> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
> > Ok, I'll dig up my notes on how to do that and submit it shortly. Should
> > this be done against trunk or a release branch ?
> >
> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick <matt.mccormick at kitware.com>
> > wrote:
> >>
> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
> >> merged to make the release. As Dzenan recommends, please submit the
> >> patch to Gerrit with a verification for
> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
> >>
> >> Thanks,
> >> Matt
> >>
> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:
> >> > Better submit the usual way. I doubt Matt will include it without the
> >> > usual
> >> > testing. Add me and Matt as reviewers.
> >> >
> >> > Regards,
> >> > D?enan
> >> >
> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander <
> skalexander at gmail.com>
> >> > wrote:
> >> >>
> >> >> We found this today (patch attached).   If 4.8.2 is right around the
> >> >> corner, can you consider it for inclusion.  If time isn't so short,
> >> >> I'll
> >> >> submit the usual way....
> >> >>
> >> >> cheers,
> >> >> Simon
> >> >>
> >> >>
> >> >>
> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick <
> matt.mccormick at kitware.com>
> >> >> wrote:
> >> >>>
> >> >>> Thanks!  Added.
> >> >>>
> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
> >> >>> <blowekamp at mail.nih.gov>
> >> >>> wrote:
> >> >>> > We should consider this:
> >> >>> > http://review.source.kitware.com/#/c/20369/
> >> >>> >
> >> >>> > This helps with using VS2015 GUI.
> >> >>> >
> >> >>> >
> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
> >> >>> > <matt.mccormick at kitware.com>
> >> >>> > wrote:
> >> >>> >
> >> >>> >> Hi,
> >> >>> >>
> >> >>> >> It is time to make the 4.8.2 release. The following patches are
> new
> >> >>> >> on
> >> >>> >> the release branch since 4.8.1.  Is there anything missing?
> >> >>> >>
> >> >>> >> Thanks,
> >> >>> >> Matt
> >> >>> >>
> >> >>> >> Bradley Lowekamp (4):
> >> >>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
> >> >>> >> construction
> >> >>> >>      BUG: Use const pointer in Set method for constant
> >> >>> >> ReferenceImage
> >> >>> >> ivar
> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
> Threshold
> >> >>> >> range
> >> >>> >>
> >> >>> >> Davis Vigneault (3):
> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with
> c++11
> >> >>> >>      DOC: Expanded Canny Edge Detection Example
> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >> >>> >>
> >> >>> >> Eugene Prilepin (1):
> >> >>> >>      BUG: Fix a template name formation in python wrappings
> >> >>> >>
> >> >>> >> Hans Johnson (5):
> >> >>> >>      STYLE: Minor code style issues for MGHIO
> >> >>> >>      COMP: Update to version for WikiExamples
> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
> >> >>> >>      ENH: Update MGHIO to be shared lib
> >> >>> >>      BUG: Fix MGHIO to fix write failures
> >> >>> >>
> >> >>> >> Hyun Jae Kang (4):
> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >> >>> >>      BUG: Remove std::cout calls from class
> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
> >> >>> >> file
> >> >>> >> header.
> >> >>> >>      BUG: Fixed older XCode linking error
> >> >>> >>
> >> >>> >> Matthew McCormick (8):
> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >> >>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >> >>> >>      DOC: Correct spelling of Continuous.
> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
> sys.path
> >> >>> >>      COMP: Set CMP0054 to new.
> >> >>> >>
> >> >>> >> Michka Popoff (1):
> >> >>> >>      COMP: Disable incompatible modules when using Python 3
> >> >>> >> wrapping
> >> >>> >>
> >> >>> >> Mikhail Isakov (1):
> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
> >> >>> >> image
> >> >>> >> _______________________________________________
> >> >>> >> Powered by www.kitware.com
> >> >>> >>
> >> >>> >> Visit other Kitware open-source projects at
> >> >>> >> http://www.kitware.com/opensource/opensource.html
> >> >>> >>
> >> >>> >> Kitware offers ITK Training Courses, for more information visit:
> >> >>> >> http://kitware.com/products/protraining.php
> >> >>> >>
> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >>> >>
> >> >>> >> Follow this link to subscribe/unsubscribe:
> >> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >>> >
> >> >>> _______________________________________________
> >> >>> Powered by www.kitware.com
> >> >>>
> >> >>> Visit other Kitware open-source projects at
> >> >>> http://www.kitware.com/opensource/opensource.html
> >> >>>
> >> >>> Kitware offers ITK Training Courses, for more information visit:
> >> >>> http://kitware.com/products/protraining.php
> >> >>>
> >> >>> Please keep messages on-topic and check the ITK FAQ at:
> >> >>> http://www.itk.org/Wiki/ITK_FAQ
> >> >>>
> >> >>> Follow this link to subscribe/unsubscribe:
> >> >>> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >>
> >> >>
> >> >> _______________________________________________
> >> >> Powered by www.kitware.com
> >> >>
> >> >> Visit other Kitware open-source projects at
> >> >> http://www.kitware.com/opensource/opensource.html
> >> >>
> >> >> Kitware offers ITK Training Courses, for more information visit:
> >> >> http://kitware.com/products/protraining.php
> >> >>
> >> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >>
> >> >> Follow this link to subscribe/unsubscribe:
> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >>
> >> >> _______________________________________________
> >> >> Community mailing list
> >> >> Community at itk.org
> >> >> http://public.kitware.com/mailman/listinfo/community
> >> >>
> >> >
>
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_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
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From gaoyi.cn at gmail.com  Tue Nov 10 09:21:47 2015
From: gaoyi.cn at gmail.com (Yi Gao)
Date: Tue, 10 Nov 2015 09:21:47 -0500
Subject: [ITK] [ITK-users] Problem with configure with 4.8.1 and gcc 5
In-Reply-To: <1792052.Ej4RIIi5E6@hinata>
References: <1792052.Ej4RIIi5E6@hinata>
Message-ID: <CAC+uqGEjJgtdF9FyNiTA4J3c9ZGW8F8ub4HVYELYtuPgt99+rA@mail.gmail.com>

Dear Alfonso and All,

1. I got the same error with ITK 4.8.1 gcc 4.8.5 under CentOS 6.5 with
cmake binary 3.3 and 3.4rc3.

2. On another machine with Mint 17.2, ITK 4.8.1, gcc 4.8.4, cmake 3.3,
everything is fine.

I made a minimal test cmakelists to run the testBigEndian function in cmake
and that works, but when that's in the ITK cmakelists somewhere goes wrong.

After trying different things for several hours, my solution to the 1st
problem was: use ITK 4.7.2 and everything is fine (going back to ITK 4.6
works for me too).

I also noticed that ITK 4.8.1 is much smaller than 4.7 (>200M down to 16M).
This a dramatic change in size.

Best,
yi

On Tue, Oct 6, 2015 at 10:20 AM, Alfonso Castro <alfonso.castro at udc.es>
wrote:

> Hi.
>
> I tried to compiled in OpenSuSE Tumbleweed ITK 4.8.1 but I obtained an
> error
> in configure:
>
>  CMake Error at /usr/share/cmake/Modules/TestBigEndian.cmake:51 (message):
>    no suitable type found
>  Call Stack (most recent call first):
>    Modules/ThirdParty/VNL/src/vxl/config/cmake/config/CMakeLists.txt:285
> (TEST_BIG_ENDIAN)
>
> However, the configuration and compile are without a problem using clang.
>
> The info of gcc version is:
>
> Using built-in specs.
> COLLECT_GCC=gcc
> COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/5/lto-wrapper
> Target: x86_64-suse-linux
> Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --
> mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-
> languages=c,c++,objc,fortran,obj-c++,java,ada,go --enable-checking=release
> --
> with-gxx-include-dir=/usr/include/c++/5 --enable-ssp --disable-libssp --
> disable-libvtv --enable-libmpx --disable-plugin --with-bugurl=http://
> bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --with-
> slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-
> allocator=new --disable-libstdcxx-pch
> --enable-version-specific-runtime-libs
> --enable-linker-build-id --enable-linux-futex --program-suffix=-5
> --without-
> system-libunwind --enable-multilib --with-arch-32=i586 --with-tune=generic
> --
> build=x86_64-suse-linux --host=x86_64-suse-linux
> Thread model: posix
> gcc version 5.1.1 20150713 [gcc-5-branch revision 225736] (SUSE Linux)
>
> VTK 6.3 compile without a problem using gcc 5.
>
> The info of clang version is:
>
> clang version 3.7.0 (tags/RELEASE_370/final 246586)
> Target: x86_64-suse-linux
> Thread model: posix
> Found candidate GCC installation:
> /usr/bin/../lib64/gcc/x86_64-suse-linux/4.8
> Found candidate GCC installation: /usr/bin/../lib64/gcc/x86_64-suse-linux/5
> Found candidate GCC installation: /usr/lib64/gcc/x86_64-suse-linux/4.8
> Found candidate GCC installation: /usr/lib64/gcc/x86_64-suse-linux/5
> Selected GCC installation: /usr/bin/../lib64/gcc/x86_64-suse-linux/5
> Candidate multilib: .;@m64
> Selected multilib: .;@m64
>
> Thanks in advance.
>
> Alfonso Castro
> Faculty of Computer Science
> University of A Coruna
>
>
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>





-- 
Yi Gao, Ph.D.
Assistant Professor
Department of Biomedical Informatics
Departments of Computer Science and Applied Mathematics & Statistics
Stony Brook University | The  State University of New York
Stony Brook, New York, 11794
631-632-9540
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_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users

From ribaluigi at gmail.com  Tue Nov 10 09:36:50 2015
From: ribaluigi at gmail.com (Luigi Riba)
Date: Tue, 10 Nov 2015 15:36:50 +0100
Subject: [ITK] registration - memory concerns
In-Reply-To: <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
 <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
Message-ID: <CAJaJUhNMdRhM4JUvbk2RnbJSbn2CQm2c1q+B+S8VqVNzPh6-qw@mail.gmail.com>

Dear Matt,

I have tried following your suggestion but, unfortunately, it didn't work
out.

In particular:

   1. I read a pair of uint16 images;
   2. I cast them to float pixel type via the CastImageFilter;
   3. I change the TInternalComputationValueType for the metric, the
   optimizer, the transform and the registration doing something like:

const unsigned int Dimension = 3;

typedef float PixelType;

typedef unsigned short IOPixelType;
>
typedef itk::Image<IOPixelType, Dimension> IOImageType;

typedef itk::Image<PixelType, Dimension> ImageType;

typedef itk::AffineTransform<float, Dimension > TransformType;

typedef itk::RegularStepGradientDescentOptimizerv4<float> OptimizerType;

typedef itk::MeanSquaresImageToImageMetricv4<ImageType,
> ImageType,ImageType,float> MetricType;

typedef itk::ImageRegistrationMethodv4<ImageType, ImageType, TransformType>
> RegistrationType;

typedef itk::ResampleImageFilter<IOImageType, IOImageType, float,float>
> ResampleFilterType;





I have put one memory probe before the registration procedure and one
afterwards of it. In the "double" case and in the "float" case I've seen
the same memory consumption.

Am I missing something? Are there other things I should change in my code?

Thanks again for the support,
Luigi



2015-11-09 17:23 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:

> Hi Luigi,
>
> The type of optimizer should not have too large of an impact on memory
> consumption.  Using a gradient-free optimizer may help slightly, but
> try changing the pixel type of the input images or, if possible, the
> parameter type of the transformation, from double to float.
>
> HTH,
> Matt
>
> On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <ribaluigi at gmail.com> wrote:
> > Dear all,
> >
> > I am registering a couple of volumes with ITK 4 on windows 7 64 bit.
> >
> > I wrote a code based on the affine transformation, with the mean square
> > error metric and the RegularStepGradientDescentOptimizerv4.
> Unfortunately,
> > the memory usage is pretty high.
> >
> > I have checked memory consumption with the itkMemoryProbe and, after
> looking
> > around on previous mailing list messages I have decided to try with a
> > gradient free optimizer like the Nelder-Mead one.
> >
> > So I have rewrote the code using the AmoebaOptimizerV4 and I have
> continued
> > monitoring the memory consumption via MemoryProbe. Unfortunately, it
> seems
> > that nothing has changed. Is this working as expected? If this is the
> case,
> > do you have any suggestion to gave me in order to reduce the memory
> > consumption of the code?
> >
> > Thanks in advance for the help.
> >
> > Best,
> >
> > Luigi
> >
> > _______________________________________________
> > Community mailing list
> > Community at itk.org
> > http://public.kitware.com/mailman/listinfo/community
> >
>
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From matimontg at gmail.com  Tue Nov 10 09:45:33 2015
From: matimontg at gmail.com (Matias Montroull)
Date: Tue, 10 Nov 2015 14:45:33 +0000
Subject: [ITK] registration - memory concerns
In-Reply-To: <CAJaJUhNMdRhM4JUvbk2RnbJSbn2CQm2c1q+B+S8VqVNzPh6-qw@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
 <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
 <CAJaJUhNMdRhM4JUvbk2RnbJSbn2CQm2c1q+B+S8VqVNzPh6-qw@mail.gmail.com>
Message-ID: <CAKKNfuKdPXKPKK2ovrY9pywnJ87DV9Puy+HEHNBoBMTP8ybTGw@mail.gmail.com>

try this:
typedef  signed short  PixelType;


El mar., 10 de nov. de 2015 a la(s) 11:36 a. m., Luigi Riba <
ribaluigi at gmail.com> escribi?:

> Dear Matt,
>
> I have tried following your suggestion but, unfortunately, it didn't work
> out.
>
> In particular:
>
>    1. I read a pair of uint16 images;
>    2. I cast them to float pixel type via the CastImageFilter;
>    3. I change the TInternalComputationValueType for the metric, the
>    optimizer, the transform and the registration doing something like:
>
> const unsigned int Dimension = 3;
>
> typedef float PixelType;
>
> typedef unsigned short IOPixelType;
>>
> typedef itk::Image<IOPixelType, Dimension> IOImageType;
>
> typedef itk::Image<PixelType, Dimension> ImageType;
>
> typedef itk::AffineTransform<float, Dimension > TransformType;
>
> typedef itk::RegularStepGradientDescentOptimizerv4<float> OptimizerType;
>
> typedef itk::MeanSquaresImageToImageMetricv4<ImageType,
>> ImageType,ImageType,float> MetricType;
>
> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>> TransformType> RegistrationType;
>
> typedef itk::ResampleImageFilter<IOImageType, IOImageType, float,float>
>> ResampleFilterType;
>
>
>
>
>
> I have put one memory probe before the registration procedure and one
> afterwards of it. In the "double" case and in the "float" case I've seen
> the same memory consumption.
>
> Am I missing something? Are there other things I should change in my code?
>
> Thanks again for the support,
> Luigi
>
>
>
> 2015-11-09 17:23 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:
>
>> Hi Luigi,
>>
>> The type of optimizer should not have too large of an impact on memory
>> consumption.  Using a gradient-free optimizer may help slightly, but
>> try changing the pixel type of the input images or, if possible, the
>> parameter type of the transformation, from double to float.
>>
>> HTH,
>> Matt
>>
>> On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <ribaluigi at gmail.com> wrote:
>> > Dear all,
>> >
>> > I am registering a couple of volumes with ITK 4 on windows 7 64 bit.
>> >
>> > I wrote a code based on the affine transformation, with the mean square
>> > error metric and the RegularStepGradientDescentOptimizerv4.
>> Unfortunately,
>> > the memory usage is pretty high.
>> >
>> > I have checked memory consumption with the itkMemoryProbe and, after
>> looking
>> > around on previous mailing list messages I have decided to try with a
>> > gradient free optimizer like the Nelder-Mead one.
>> >
>> > So I have rewrote the code using the AmoebaOptimizerV4 and I have
>> continued
>> > monitoring the memory consumption via MemoryProbe. Unfortunately, it
>> seems
>> > that nothing has changed. Is this working as expected? If this is the
>> case,
>> > do you have any suggestion to gave me in order to reduce the memory
>> > consumption of the code?
>> >
>> > Thanks in advance for the help.
>> >
>> > Best,
>> >
>> > Luigi
>> >
>> > _______________________________________________
>> > Community mailing list
>> > Community at itk.org
>> > http://public.kitware.com/mailman/listinfo/community
>> >
>>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
-- 
Matias
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From simpsona at gmail.com  Tue Nov 10 11:02:33 2015
From: simpsona at gmail.com (Amber Simpson)
Date: Tue, 10 Nov 2015 11:02:33 -0500
Subject: [ITK] problems installing ITK 4.8.1 on OS X 10.9.5
In-Reply-To: <CAMj5ekHGg9MoYzOC=hUsaQtOsMbqakMmaLpnoWPVsJ+hc_WNSw@mail.gmail.com>
References: <CAMj5ekGNhyMqQJ66rcZ83XvJBG1NG+EqLubKqJ9UX+wMF6frtQ@mail.gmail.com>
 <CALzTN-QOrHdMGu3H6HZM4aG-xtf=1=z8QuQ4X=-GqB2KPZLEEQ@mail.gmail.com>
 <CAMj5ekHGg9MoYzOC=hUsaQtOsMbqakMmaLpnoWPVsJ+hc_WNSw@mail.gmail.com>
Message-ID: <CAMj5ekGzY2O1EwfDJyapVi1cs=21nUeB0ymiWapj36snx-KVdg@mail.gmail.com>

Hi Matt & Everyone,

I wanted to followup to let you know that I resolved the problem by
reverting from CMake 3.4.0-rc3 to 3.3.2. I tried other versions of ITK/VTK
(including the nightly build) with the same errors. As soon as I reverted
to a different CMake, no problems at all.

Thanks,
Amber

On Fri, Nov 6, 2015 at 7:48 PM, Amber Simpson <simpsona at gmail.com> wrote:

> Hi Matt,
>
> The file is present in VTK but the directory is not included in the -l
> list in ITK. Related, the incorrect include directory is shown
> (/include/vtk-6.3 instead of ~/VTKBuild/include/vtk-6.3) in the same
> listing. I'm not sure where these are set.
>
> Thanks for your help,
>
> Amber
>
> On Fri, Nov 6, 2015 at 6:48 PM, Matt McCormick <matt.mccormick at kitware.com
> > wrote:
>
>> Hi Amber,
>>
>> I could could not reproduce the build error with ITK 4.8.1 and VTK
>> 6.3.0 on Mac OSX.  VTK is in my source tree at
>>
>>   VTK/Common/Core/vtkVersion.h
>>
>> Is this file present?
>>
>> If you run
>>
>>   make VERBOSE=1
>>
>> is its directory included with a -I flag?
>>
>> Thanks,
>> Matt
>>
>> On Fri, Nov 6, 2015 at 1:38 PM, Amber Simpson <simpsona at gmail.com> wrote:
>> >
>> >
>> > Hi All,
>> >
>> > I'm having trouble compiling ITK, specifically itkvtkglue (see below),
>> using
>> > VTK 6.3.0 and CMake 3.4.0-rc3. CMakeCache.txt is attached. Any
>> suggestions?
>> >
>> > Thanks,
>> > Amber
>> >
>> >
>> > -----------------
>> >
>> >
>> > [ 99%] Built target ITKSpatialFunction-all
>> >
>> > [ 99%] Built target itkTestDriver
>> >
>> > [ 99%] Built target ITKTestKernel-all
>> >
>> > [ 99%] Built target ITKVTK
>> >
>> > [ 99%] Built target ITKVTK-all
>> >
>> > [ 99%] Built target ITKVideoCore
>> >
>> > [ 99%] Built target ITKVideoCore-all
>> >
>> > [ 99%] Built target ITKVideoFiltering-all
>> >
>> > [100%] Built target ITKVideoIO
>> >
>> > [100%] Built target ITKVideoIO-all
>> >
>> > [100%] Built target ITKVoronoi-all
>> >
>> > [100%] Building CXX object
>> > Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/QuickView.cxx.o
>> >
>> >
>> /Users/simpsonl/Software/ITK-4.8.1/Modules/Bridge/VtkGlue/src/QuickView.cxx:25:10:
>> > fatal error: 'vtkVersion.h' file not
>> >
>> >       found
>> >
>> > #include "vtkVersion.h"
>> >
>> >          ^
>> >
>> > 1 error generated.
>> >
>> > make[2]: ***
>> > [Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/QuickView.cxx.o]
>> Error
>> > 1
>> >
>> > make[1]: *** [Modules/Bridge/VtkGlue/src/CMakeFiles/ITKVtkGlue.dir/all]
>> > Error 2
>> >
>> > make: *** [all] Error 2
>> >
>> >
>> >
>> > _______________________________________________
>> > Community mailing list
>> > Community at itk.org
>> > http://public.kitware.com/mailman/listinfo/community
>> >
>>
>
>
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From skalexander at gmail.com  Tue Nov 10 11:35:48 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Tue, 10 Nov 2015 16:35:48 +0000
Subject: [ITK] [ITK-dev]   Patches for the 4.8.2 release
In-Reply-To: <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
Message-ID: <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>

Ok, I have a patch ready off the release branch.

I don't think I have push access for gerrit though, is there a way to just
start a review from a patch that I am missing in the linked docs?

On Mon, 9 Nov 2015 at 17:08 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Great!
>
> Instructions can be found here:
>
>   http://www.itk.org/Wiki/ITK/Git
>
> Please branch off of the "release" branch.
>
> Thanks,
> Matt
>
> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
> > Ok, I'll dig up my notes on how to do that and submit it shortly. Should
> > this be done against trunk or a release branch ?
> >
> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick <matt.mccormick at kitware.com>
> > wrote:
> >>
> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
> >> merged to make the release. As Dzenan recommends, please submit the
> >> patch to Gerrit with a verification for
> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
> >>
> >> Thanks,
> >> Matt
> >>
> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:
> >> > Better submit the usual way. I doubt Matt will include it without the
> >> > usual
> >> > testing. Add me and Matt as reviewers.
> >> >
> >> > Regards,
> >> > D?enan
> >> >
> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander <
> skalexander at gmail.com>
> >> > wrote:
> >> >>
> >> >> We found this today (patch attached).   If 4.8.2 is right around the
> >> >> corner, can you consider it for inclusion.  If time isn't so short,
> >> >> I'll
> >> >> submit the usual way....
> >> >>
> >> >> cheers,
> >> >> Simon
> >> >>
> >> >>
> >> >>
> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick <
> matt.mccormick at kitware.com>
> >> >> wrote:
> >> >>>
> >> >>> Thanks!  Added.
> >> >>>
> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
> >> >>> <blowekamp at mail.nih.gov>
> >> >>> wrote:
> >> >>> > We should consider this:
> >> >>> > http://review.source.kitware.com/#/c/20369/
> >> >>> >
> >> >>> > This helps with using VS2015 GUI.
> >> >>> >
> >> >>> >
> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
> >> >>> > <matt.mccormick at kitware.com>
> >> >>> > wrote:
> >> >>> >
> >> >>> >> Hi,
> >> >>> >>
> >> >>> >> It is time to make the 4.8.2 release. The following patches are
> new
> >> >>> >> on
> >> >>> >> the release branch since 4.8.1.  Is there anything missing?
> >> >>> >>
> >> >>> >> Thanks,
> >> >>> >> Matt
> >> >>> >>
> >> >>> >> Bradley Lowekamp (4):
> >> >>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
> >> >>> >> construction
> >> >>> >>      BUG: Use const pointer in Set method for constant
> >> >>> >> ReferenceImage
> >> >>> >> ivar
> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
> Threshold
> >> >>> >> range
> >> >>> >>
> >> >>> >> Davis Vigneault (3):
> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with
> c++11
> >> >>> >>      DOC: Expanded Canny Edge Detection Example
> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >> >>> >>
> >> >>> >> Eugene Prilepin (1):
> >> >>> >>      BUG: Fix a template name formation in python wrappings
> >> >>> >>
> >> >>> >> Hans Johnson (5):
> >> >>> >>      STYLE: Minor code style issues for MGHIO
> >> >>> >>      COMP: Update to version for WikiExamples
> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
> >> >>> >>      ENH: Update MGHIO to be shared lib
> >> >>> >>      BUG: Fix MGHIO to fix write failures
> >> >>> >>
> >> >>> >> Hyun Jae Kang (4):
> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >> >>> >>      BUG: Remove std::cout calls from class
> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
> >> >>> >> file
> >> >>> >> header.
> >> >>> >>      BUG: Fixed older XCode linking error
> >> >>> >>
> >> >>> >> Matthew McCormick (8):
> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >> >>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >> >>> >>      DOC: Correct spelling of Continuous.
> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
> sys.path
> >> >>> >>      COMP: Set CMP0054 to new.
> >> >>> >>
> >> >>> >> Michka Popoff (1):
> >> >>> >>      COMP: Disable incompatible modules when using Python 3
> >> >>> >> wrapping
> >> >>> >>
> >> >>> >> Mikhail Isakov (1):
> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
> >> >>> >> image
> >> >>> >> _______________________________________________
> >> >>> >> Powered by www.kitware.com
> >> >>> >>
> >> >>> >> Visit other Kitware open-source projects at
> >> >>> >> http://www.kitware.com/opensource/opensource.html
> >> >>> >>
> >> >>> >> Kitware offers ITK Training Courses, for more information visit:
> >> >>> >> http://kitware.com/products/protraining.php
> >> >>> >>
> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >>> >>
> >> >>> >> Follow this link to subscribe/unsubscribe:
> >> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >>> >
> >> >>> _______________________________________________
> >> >>> Powered by www.kitware.com
> >> >>>
> >> >>> Visit other Kitware open-source projects at
> >> >>> http://www.kitware.com/opensource/opensource.html
> >> >>>
> >> >>> Kitware offers ITK Training Courses, for more information visit:
> >> >>> http://kitware.com/products/protraining.php
> >> >>>
> >> >>> Please keep messages on-topic and check the ITK FAQ at:
> >> >>> http://www.itk.org/Wiki/ITK_FAQ
> >> >>>
> >> >>> Follow this link to subscribe/unsubscribe:
> >> >>> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >>
> >> >>
> >> >> _______________________________________________
> >> >> Powered by www.kitware.com
> >> >>
> >> >> Visit other Kitware open-source projects at
> >> >> http://www.kitware.com/opensource/opensource.html
> >> >>
> >> >> Kitware offers ITK Training Courses, for more information visit:
> >> >> http://kitware.com/products/protraining.php
> >> >>
> >> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >>
> >> >> Follow this link to subscribe/unsubscribe:
> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >>
> >> >> _______________________________________________
> >> >> Community mailing list
> >> >> Community at itk.org
> >> >> http://public.kitware.com/mailman/listinfo/community
> >> >>
> >> >
>
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_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From matt.mccormick at kitware.com  Tue Nov 10 11:59:11 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 10 Nov 2015 11:59:11 -0500
Subject: [ITK] [ITK-dev]   Patches for the 4.8.2 release
In-Reply-To: <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
 <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>
Message-ID: <CALzTN-SHd-D3K5D1Zt9k8gLuEtPRyLBTCY8aWrA3V7aN6XXXGA@mail.gmail.com>

Hi Simon,

Great!

You should be able to sign up for Gerrit, then add your SSH key to
your account and push.  Instructions are here:

  https://cmake.org/Wiki/ITK/Git/Account#Gerrit

Please let us know if you have any issues.

Thanks,
Matt

On Tue, Nov 10, 2015 at 11:35 AM, Simon Alexander <skalexander at gmail.com> wrote:
> Ok, I have a patch ready off the release branch.
>
> I don't think I have push access for gerrit though, is there a way to just
> start a review from a patch that I am missing in the linked docs?
>
> On Mon, 9 Nov 2015 at 17:08 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Great!
>>
>> Instructions can be found here:
>>
>>   http://www.itk.org/Wiki/ITK/Git
>>
>> Please branch off of the "release" branch.
>>
>> Thanks,
>> Matt
>>
>> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>> > Ok, I'll dig up my notes on how to do that and submit it shortly. Should
>> > this be done against trunk or a release branch ?
>> >
>> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick <matt.mccormick at kitware.com>
>> > wrote:
>> >>
>> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
>> >> merged to make the release. As Dzenan recommends, please submit the
>> >> patch to Gerrit with a verification for
>> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
>> >>
>> >> Thanks,
>> >> Matt
>> >>
>> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:
>> >> > Better submit the usual way. I doubt Matt will include it without the
>> >> > usual
>> >> > testing. Add me and Matt as reviewers.
>> >> >
>> >> > Regards,
>> >> > D?enan
>> >> >
>> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander
>> >> > <skalexander at gmail.com>
>> >> > wrote:
>> >> >>
>> >> >> We found this today (patch attached).   If 4.8.2 is right around the
>> >> >> corner, can you consider it for inclusion.  If time isn't so short,
>> >> >> I'll
>> >> >> submit the usual way....
>> >> >>
>> >> >> cheers,
>> >> >> Simon
>> >> >>
>> >> >>
>> >> >>
>> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick
>> >> >> <matt.mccormick at kitware.com>
>> >> >> wrote:
>> >> >>>
>> >> >>> Thanks!  Added.
>> >> >>>
>> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
>> >> >>> <blowekamp at mail.nih.gov>
>> >> >>> wrote:
>> >> >>> > We should consider this:
>> >> >>> > http://review.source.kitware.com/#/c/20369/
>> >> >>> >
>> >> >>> > This helps with using VS2015 GUI.
>> >> >>> >
>> >> >>> >
>> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
>> >> >>> > <matt.mccormick at kitware.com>
>> >> >>> > wrote:
>> >> >>> >
>> >> >>> >> Hi,
>> >> >>> >>
>> >> >>> >> It is time to make the 4.8.2 release. The following patches are
>> >> >>> >> new
>> >> >>> >> on
>> >> >>> >> the release branch since 4.8.1.  Is there anything missing?
>> >> >>> >>
>> >> >>> >> Thanks,
>> >> >>> >> Matt
>> >> >>> >>
>> >> >>> >> Bradley Lowekamp (4):
>> >> >>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
>> >> >>> >> construction
>> >> >>> >>      BUG: Use const pointer in Set method for constant
>> >> >>> >> ReferenceImage
>> >> >>> >> ivar
>> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
>> >> >>> >> Threshold
>> >> >>> >> range
>> >> >>> >>
>> >> >>> >> Davis Vigneault (3):
>> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with
>> >> >>> >> c++11
>> >> >>> >>      DOC: Expanded Canny Edge Detection Example
>> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >> >>> >>
>> >> >>> >> Eugene Prilepin (1):
>> >> >>> >>      BUG: Fix a template name formation in python wrappings
>> >> >>> >>
>> >> >>> >> Hans Johnson (5):
>> >> >>> >>      STYLE: Minor code style issues for MGHIO
>> >> >>> >>      COMP: Update to version for WikiExamples
>> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
>> >> >>> >>      ENH: Update MGHIO to be shared lib
>> >> >>> >>      BUG: Fix MGHIO to fix write failures
>> >> >>> >>
>> >> >>> >> Hyun Jae Kang (4):
>> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>> >> >>> >>      BUG: Remove std::cout calls from class
>> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>> >> >>> >> file
>> >> >>> >> header.
>> >> >>> >>      BUG: Fixed older XCode linking error
>> >> >>> >>
>> >> >>> >> Matthew McCormick (8):
>> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >> >>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >> >>> >>      DOC: Correct spelling of Continuous.
>> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
>> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
>> >> >>> >> sys.path
>> >> >>> >>      COMP: Set CMP0054 to new.
>> >> >>> >>
>> >> >>> >> Michka Popoff (1):
>> >> >>> >>      COMP: Disable incompatible modules when using Python 3
>> >> >>> >> wrapping
>> >> >>> >>
>> >> >>> >> Mikhail Isakov (1):
>> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>> >> >>> >> baseline
>> >> >>> >> image
>> >> >>> >> _______________________________________________
>> >> >>> >> Powered by www.kitware.com
>> >> >>> >>
>> >> >>> >> Visit other Kitware open-source projects at
>> >> >>> >> http://www.kitware.com/opensource/opensource.html
>> >> >>> >>
>> >> >>> >> Kitware offers ITK Training Courses, for more information visit:
>> >> >>> >> http://kitware.com/products/protraining.php
>> >> >>> >>
>> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >> >>> >>
>> >> >>> >> Follow this link to subscribe/unsubscribe:
>> >> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
>> >> >>> >
>> >> >>> _______________________________________________
>> >> >>> Powered by www.kitware.com
>> >> >>>
>> >> >>> Visit other Kitware open-source projects at
>> >> >>> http://www.kitware.com/opensource/opensource.html
>> >> >>>
>> >> >>> Kitware offers ITK Training Courses, for more information visit:
>> >> >>> http://kitware.com/products/protraining.php
>> >> >>>
>> >> >>> Please keep messages on-topic and check the ITK FAQ at:
>> >> >>> http://www.itk.org/Wiki/ITK_FAQ
>> >> >>>
>> >> >>> Follow this link to subscribe/unsubscribe:
>> >> >>> http://public.kitware.com/mailman/listinfo/insight-developers
>> >> >>
>> >> >>
>> >> >> _______________________________________________
>> >> >> Powered by www.kitware.com
>> >> >>
>> >> >> Visit other Kitware open-source projects at
>> >> >> http://www.kitware.com/opensource/opensource.html
>> >> >>
>> >> >> Kitware offers ITK Training Courses, for more information visit:
>> >> >> http://kitware.com/products/protraining.php
>> >> >>
>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>> >> >>
>> >> >> Follow this link to subscribe/unsubscribe:
>> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
>> >> >>
>> >> >> _______________________________________________
>> >> >> Community mailing list
>> >> >> Community at itk.org
>> >> >> http://public.kitware.com/mailman/listinfo/community
>> >> >>
>> >> >
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From skalexander at gmail.com  Tue Nov 10 12:13:02 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Tue, 10 Nov 2015 17:13:02 +0000
Subject: [ITK] [ITK-dev]   Patches for the 4.8.2 release
In-Reply-To: <CALzTN-SHd-D3K5D1Zt9k8gLuEtPRyLBTCY8aWrA3V7aN6XXXGA@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
 <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>
 <CALzTN-SHd-D3K5D1Zt9k8gLuEtPRyLBTCY8aWrA3V7aN6XXXGA@mail.gmail.com>
Message-ID: <CAJFNcCRLyXzCFOW9FR5YXYdGS8iRnGfDSLvkDCT+A3aDS4Afgg@mail.gmail.com>

I had already done that, the problem was elsewhere but I have now sorted it.

Issue is 20301.

I added Matt as reviewer but couldn't find Dzenan in the system.



On Tue, 10 Nov 2015 at 11:59 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Simon,
>
> Great!
>
> You should be able to sign up for Gerrit, then add your SSH key to
> your account and push.  Instructions are here:
>
>   https://cmake.org/Wiki/ITK/Git/Account#Gerrit
>
> Please let us know if you have any issues.
>
> Thanks,
> Matt
>
> On Tue, Nov 10, 2015 at 11:35 AM, Simon Alexander <skalexander at gmail.com>
> wrote:
> > Ok, I have a patch ready off the release branch.
> >
> > I don't think I have push access for gerrit though, is there a way to
> just
> > start a review from a patch that I am missing in the linked docs?
> >
> > On Mon, 9 Nov 2015 at 17:08 Matt McCormick <matt.mccormick at kitware.com>
> > wrote:
> >>
> >> Great!
> >>
> >> Instructions can be found here:
> >>
> >>   http://www.itk.org/Wiki/ITK/Git
> >>
> >> Please branch off of the "release" branch.
> >>
> >> Thanks,
> >> Matt
> >>
> >> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander <skalexander at gmail.com>
> >> wrote:
> >> > Ok, I'll dig up my notes on how to do that and submit it shortly.
> Should
> >> > this be done against trunk or a release branch ?
> >> >
> >> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick <
> matt.mccormick at kitware.com>
> >> > wrote:
> >> >>
> >> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
> >> >> merged to make the release. As Dzenan recommends, please submit the
> >> >> patch to Gerrit with a verification for
> >> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
> >> >>
> >> >> Thanks,
> >> >> Matt
> >> >>
> >> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com>
> wrote:
> >> >> > Better submit the usual way. I doubt Matt will include it without
> the
> >> >> > usual
> >> >> > testing. Add me and Matt as reviewers.
> >> >> >
> >> >> > Regards,
> >> >> > D?enan
> >> >> >
> >> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander
> >> >> > <skalexander at gmail.com>
> >> >> > wrote:
> >> >> >>
> >> >> >> We found this today (patch attached).   If 4.8.2 is right around
> the
> >> >> >> corner, can you consider it for inclusion.  If time isn't so
> short,
> >> >> >> I'll
> >> >> >> submit the usual way....
> >> >> >>
> >> >> >> cheers,
> >> >> >> Simon
> >> >> >>
> >> >> >>
> >> >> >>
> >> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick
> >> >> >> <matt.mccormick at kitware.com>
> >> >> >> wrote:
> >> >> >>>
> >> >> >>> Thanks!  Added.
> >> >> >>>
> >> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
> >> >> >>> <blowekamp at mail.nih.gov>
> >> >> >>> wrote:
> >> >> >>> > We should consider this:
> >> >> >>> > http://review.source.kitware.com/#/c/20369/
> >> >> >>> >
> >> >> >>> > This helps with using VS2015 GUI.
> >> >> >>> >
> >> >> >>> >
> >> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
> >> >> >>> > <matt.mccormick at kitware.com>
> >> >> >>> > wrote:
> >> >> >>> >
> >> >> >>> >> Hi,
> >> >> >>> >>
> >> >> >>> >> It is time to make the 4.8.2 release. The following patches
> are
> >> >> >>> >> new
> >> >> >>> >> on
> >> >> >>> >> the release branch since 4.8.1.  Is there anything missing?
> >> >> >>> >>
> >> >> >>> >> Thanks,
> >> >> >>> >> Matt
> >> >> >>> >>
> >> >> >>> >> Bradley Lowekamp (4):
> >> >> >>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
> >> >> >>> >> construction
> >> >> >>> >>      BUG: Use const pointer in Set method for constant
> >> >> >>> >> ReferenceImage
> >> >> >>> >> ivar
> >> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
> >> >> >>> >> Threshold
> >> >> >>> >> range
> >> >> >>> >>
> >> >> >>> >> Davis Vigneault (3):
> >> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with
> >> >> >>> >> c++11
> >> >> >>> >>      DOC: Expanded Canny Edge Detection Example
> >> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >> >> >>> >>
> >> >> >>> >> Eugene Prilepin (1):
> >> >> >>> >>      BUG: Fix a template name formation in python wrappings
> >> >> >>> >>
> >> >> >>> >> Hans Johnson (5):
> >> >> >>> >>      STYLE: Minor code style issues for MGHIO
> >> >> >>> >>      COMP: Update to version for WikiExamples
> >> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
> >> >> >>> >>      ENH: Update MGHIO to be shared lib
> >> >> >>> >>      BUG: Fix MGHIO to fix write failures
> >> >> >>> >>
> >> >> >>> >> Hyun Jae Kang (4):
> >> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >> >> >>> >>      BUG: Remove std::cout calls from class
> >> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in
> VTK
> >> >> >>> >> file
> >> >> >>> >> header.
> >> >> >>> >>      BUG: Fixed older XCode linking error
> >> >> >>> >>
> >> >> >>> >> Matthew McCormick (8):
> >> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >> >> >>> >>      COMP: Remove unused argument in
> ConditionVariableNoThreads.
> >> >> >>> >>      DOC: Correct spelling of Continuous.
> >> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument
> type.
> >> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
> >> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
> >> >> >>> >> sys.path
> >> >> >>> >>      COMP: Set CMP0054 to new.
> >> >> >>> >>
> >> >> >>> >> Michka Popoff (1):
> >> >> >>> >>      COMP: Disable incompatible modules when using Python 3
> >> >> >>> >> wrapping
> >> >> >>> >>
> >> >> >>> >> Mikhail Isakov (1):
> >> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no
> >> >> >>> >> baseline
> >> >> >>> >> image
> >> >> >>> >> _______________________________________________
> >> >> >>> >> Powered by www.kitware.com
> >> >> >>> >>
> >> >> >>> >> Visit other Kitware open-source projects at
> >> >> >>> >> http://www.kitware.com/opensource/opensource.html
> >> >> >>> >>
> >> >> >>> >> Kitware offers ITK Training Courses, for more information
> visit:
> >> >> >>> >> http://kitware.com/products/protraining.php
> >> >> >>> >>
> >> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >> >>> >>
> >> >> >>> >> Follow this link to subscribe/unsubscribe:
> >> >> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >> >>> >
> >> >> >>> _______________________________________________
> >> >> >>> Powered by www.kitware.com
> >> >> >>>
> >> >> >>> Visit other Kitware open-source projects at
> >> >> >>> http://www.kitware.com/opensource/opensource.html
> >> >> >>>
> >> >> >>> Kitware offers ITK Training Courses, for more information visit:
> >> >> >>> http://kitware.com/products/protraining.php
> >> >> >>>
> >> >> >>> Please keep messages on-topic and check the ITK FAQ at:
> >> >> >>> http://www.itk.org/Wiki/ITK_FAQ
> >> >> >>>
> >> >> >>> Follow this link to subscribe/unsubscribe:
> >> >> >>> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >> >>
> >> >> >>
> >> >> >> _______________________________________________
> >> >> >> Powered by www.kitware.com
> >> >> >>
> >> >> >> Visit other Kitware open-source projects at
> >> >> >> http://www.kitware.com/opensource/opensource.html
> >> >> >>
> >> >> >> Kitware offers ITK Training Courses, for more information visit:
> >> >> >> http://kitware.com/products/protraining.php
> >> >> >>
> >> >> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >> >>
> >> >> >> Follow this link to subscribe/unsubscribe:
> >> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >> >> >>
> >> >> >> _______________________________________________
> >> >> >> Community mailing list
> >> >> >> Community at itk.org
> >> >> >> http://public.kitware.com/mailman/listinfo/community
> >> >> >>
> >> >> >
>
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_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From skalexander at gmail.com  Tue Nov 10 12:13:52 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Tue, 10 Nov 2015 17:13:52 +0000
Subject: [ITK] [ITK-dev]   Patches for the 4.8.2 release
In-Reply-To: <CAJFNcCRLyXzCFOW9FR5YXYdGS8iRnGfDSLvkDCT+A3aDS4Afgg@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
 <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>
 <CALzTN-SHd-D3K5D1Zt9k8gLuEtPRyLBTCY8aWrA3V7aN6XXXGA@mail.gmail.com>
 <CAJFNcCRLyXzCFOW9FR5YXYdGS8iRnGfDSLvkDCT+A3aDS4Afgg@mail.gmail.com>
Message-ID: <CAJFNcCRy4ecqQssKhvWmdfEQ89oiMNoqE6vPBjyAPKjgdwyY5g@mail.gmail.com>

sorry, issue is 20381

On Tue, 10 Nov 2015 at 12:13 Simon Alexander <skalexander at gmail.com> wrote:

> I had already done that, the problem was elsewhere but I have now sorted
> it.
>
> Issue is 20301.
>
> I added Matt as reviewer but couldn't find Dzenan in the system.
>
>
>
> On Tue, 10 Nov 2015 at 11:59 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>
>> Hi Simon,
>>
>> Great!
>>
>> You should be able to sign up for Gerrit, then add your SSH key to
>> your account and push.  Instructions are here:
>>
>>   https://cmake.org/Wiki/ITK/Git/Account#Gerrit
>>
>> Please let us know if you have any issues.
>>
>> Thanks,
>> Matt
>>
>> On Tue, Nov 10, 2015 at 11:35 AM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>> > Ok, I have a patch ready off the release branch.
>> >
>> > I don't think I have push access for gerrit though, is there a way to
>> just
>> > start a review from a patch that I am missing in the linked docs?
>> >
>> > On Mon, 9 Nov 2015 at 17:08 Matt McCormick <matt.mccormick at kitware.com>
>> > wrote:
>> >>
>> >> Great!
>> >>
>> >> Instructions can be found here:
>> >>
>> >>   http://www.itk.org/Wiki/ITK/Git
>> >>
>> >> Please branch off of the "release" branch.
>> >>
>> >> Thanks,
>> >> Matt
>> >>
>> >> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander <skalexander at gmail.com
>> >
>> >> wrote:
>> >> > Ok, I'll dig up my notes on how to do that and submit it shortly.
>> Should
>> >> > this be done against trunk or a release branch ?
>> >> >
>> >> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick <
>> matt.mccormick at kitware.com>
>> >> > wrote:
>> >> >>
>> >> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
>> >> >> merged to make the release. As Dzenan recommends, please submit the
>> >> >> patch to Gerrit with a verification for
>> >> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
>> >> >>
>> >> >> Thanks,
>> >> >> Matt
>> >> >>
>> >> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com>
>> wrote:
>> >> >> > Better submit the usual way. I doubt Matt will include it without
>> the
>> >> >> > usual
>> >> >> > testing. Add me and Matt as reviewers.
>> >> >> >
>> >> >> > Regards,
>> >> >> > D?enan
>> >> >> >
>> >> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander
>> >> >> > <skalexander at gmail.com>
>> >> >> > wrote:
>> >> >> >>
>> >> >> >> We found this today (patch attached).   If 4.8.2 is right around
>> the
>> >> >> >> corner, can you consider it for inclusion.  If time isn't so
>> short,
>> >> >> >> I'll
>> >> >> >> submit the usual way....
>> >> >> >>
>> >> >> >> cheers,
>> >> >> >> Simon
>> >> >> >>
>> >> >> >>
>> >> >> >>
>> >> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick
>> >> >> >> <matt.mccormick at kitware.com>
>> >> >> >> wrote:
>> >> >> >>>
>> >> >> >>> Thanks!  Added.
>> >> >> >>>
>> >> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
>> >> >> >>> <blowekamp at mail.nih.gov>
>> >> >> >>> wrote:
>> >> >> >>> > We should consider this:
>> >> >> >>> > http://review.source.kitware.com/#/c/20369/
>> >> >> >>> >
>> >> >> >>> > This helps with using VS2015 GUI.
>> >> >> >>> >
>> >> >> >>> >
>> >> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
>> >> >> >>> > <matt.mccormick at kitware.com>
>> >> >> >>> > wrote:
>> >> >> >>> >
>> >> >> >>> >> Hi,
>> >> >> >>> >>
>> >> >> >>> >> It is time to make the 4.8.2 release. The following patches
>> are
>> >> >> >>> >> new
>> >> >> >>> >> on
>> >> >> >>> >> the release branch since 4.8.1.  Is there anything missing?
>> >> >> >>> >>
>> >> >> >>> >> Thanks,
>> >> >> >>> >> Matt
>> >> >> >>> >>
>> >> >> >>> >> Bradley Lowekamp (4):
>> >> >> >>> >>      BUG: Avoid potential exception in
>> itk::Object::UnRegister
>> >> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
>> >> >> >>> >> construction
>> >> >> >>> >>      BUG: Use const pointer in Set method for constant
>> >> >> >>> >> ReferenceImage
>> >> >> >>> >> ivar
>> >> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
>> >> >> >>> >> Threshold
>> >> >> >>> >> range
>> >> >> >>> >>
>> >> >> >>> >> Davis Vigneault (3):
>> >> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with
>> >> >> >>> >> c++11
>> >> >> >>> >>      DOC: Expanded Canny Edge Detection Example
>> >> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >> >> >>> >>
>> >> >> >>> >> Eugene Prilepin (1):
>> >> >> >>> >>      BUG: Fix a template name formation in python wrappings
>> >> >> >>> >>
>> >> >> >>> >> Hans Johnson (5):
>> >> >> >>> >>      STYLE: Minor code style issues for MGHIO
>> >> >> >>> >>      COMP: Update to version for WikiExamples
>> >> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
>> >> >> >>> >>      ENH: Update MGHIO to be shared lib
>> >> >> >>> >>      BUG: Fix MGHIO to fix write failures
>> >> >> >>> >>
>> >> >> >>> >> Hyun Jae Kang (4):
>> >> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>> >> >> >>> >>      BUG: Remove std::cout calls from class
>> >> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in
>> VTK
>> >> >> >>> >> file
>> >> >> >>> >> header.
>> >> >> >>> >>      BUG: Fixed older XCode linking error
>> >> >> >>> >>
>> >> >> >>> >> Matthew McCormick (8):
>> >> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >> >> >>> >>      COMP: Remove unused argument in
>> ConditionVariableNoThreads.
>> >> >> >>> >>      DOC: Correct spelling of Continuous.
>> >> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument
>> type.
>> >> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
>> >> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
>> >> >> >>> >> sys.path
>> >> >> >>> >>      COMP: Set CMP0054 to new.
>> >> >> >>> >>
>> >> >> >>> >> Michka Popoff (1):
>> >> >> >>> >>      COMP: Disable incompatible modules when using Python 3
>> >> >> >>> >> wrapping
>> >> >> >>> >>
>> >> >> >>> >> Mikhail Isakov (1):
>> >> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>> >> >> >>> >> baseline
>> >> >> >>> >> image
>> >> >> >>> >> _______________________________________________
>> >> >> >>> >> Powered by www.kitware.com
>> >> >> >>> >>
>> >> >> >>> >> Visit other Kitware open-source projects at
>> >> >> >>> >> http://www.kitware.com/opensource/opensource.html
>> >> >> >>> >>
>> >> >> >>> >> Kitware offers ITK Training Courses, for more information
>> visit:
>> >> >> >>> >> http://kitware.com/products/protraining.php
>> >> >> >>> >>
>> >> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >> >> >>> >>
>> >> >> >>> >> Follow this link to subscribe/unsubscribe:
>> >> >> >>> >>
>> http://public.kitware.com/mailman/listinfo/insight-developers
>> >> >> >>> >
>> >> >> >>> _______________________________________________
>> >> >> >>> Powered by www.kitware.com
>> >> >> >>>
>> >> >> >>> Visit other Kitware open-source projects at
>> >> >> >>> http://www.kitware.com/opensource/opensource.html
>> >> >> >>>
>> >> >> >>> Kitware offers ITK Training Courses, for more information visit:
>> >> >> >>> http://kitware.com/products/protraining.php
>> >> >> >>>
>> >> >> >>> Please keep messages on-topic and check the ITK FAQ at:
>> >> >> >>> http://www.itk.org/Wiki/ITK_FAQ
>> >> >> >>>
>> >> >> >>> Follow this link to subscribe/unsubscribe:
>> >> >> >>> http://public.kitware.com/mailman/listinfo/insight-developers
>> >> >> >>
>> >> >> >>
>> >> >> >> _______________________________________________
>> >> >> >> Powered by www.kitware.com
>> >> >> >>
>> >> >> >> Visit other Kitware open-source projects at
>> >> >> >> http://www.kitware.com/opensource/opensource.html
>> >> >> >>
>> >> >> >> Kitware offers ITK Training Courses, for more information visit:
>> >> >> >> http://kitware.com/products/protraining.php
>> >> >> >>
>> >> >> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> >> >> http://www.itk.org/Wiki/ITK_FAQ
>> >> >> >>
>> >> >> >> Follow this link to subscribe/unsubscribe:
>> >> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
>> >> >> >>
>> >> >> >> _______________________________________________
>> >> >> >> Community mailing list
>> >> >> >> Community at itk.org
>> >> >> >> http://public.kitware.com/mailman/listinfo/community
>> >> >> >>
>> >> >> >
>>
>
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_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From brad.king at kitware.com  Tue Nov 10 13:13:30 2015
From: brad.king at kitware.com (Brad King)
Date: Tue, 10 Nov 2015 13:13:30 -0500
Subject: [ITK] problems installing ITK 4.8.1 on OS X 10.9.5
In-Reply-To: <CAMj5ekGzY2O1EwfDJyapVi1cs=21nUeB0ymiWapj36snx-KVdg@mail.gmail.com>
References: <CAMj5ekGNhyMqQJ66rcZ83XvJBG1NG+EqLubKqJ9UX+wMF6frtQ@mail.gmail.com>
 <CALzTN-QOrHdMGu3H6HZM4aG-xtf=1=z8QuQ4X=-GqB2KPZLEEQ@mail.gmail.com>
 <CAMj5ekHGg9MoYzOC=hUsaQtOsMbqakMmaLpnoWPVsJ+hc_WNSw@mail.gmail.com>
 <CAMj5ekGzY2O1EwfDJyapVi1cs=21nUeB0ymiWapj36snx-KVdg@mail.gmail.com>
Message-ID: <564233CA.5060406@kitware.com>

On 11/10/2015 11:02 AM, Amber Simpson wrote:
> I resolved the problem by reverting from CMake 3.4.0-rc3 to 3.3.2

Thanks for reporting this.  I'd like to track down this possible
regression in CMake.  I'm not able to reproduce the problem as
reported.

> On Fri, Nov 6, 2015 at 7:48 PM, Amber Simpson wrote:
> 
>> The file is present in VTK but the directory is not included in
>> the -l list in ITK. Related, the incorrect include directory is
>> shown (/include/vtk-6.3 instead of ~/VTKBuild/include/vtk-6.3)
>> in the same listing. I'm not sure where these are set.

Is ~/VTKBuild the top of the build tree or of the install tree of VTK?
In the ITK CMakeCache.txt you posted you point VTK_DIR at ~/VTKBuild.
In a normal VTK build tree that directory would contain VTKConfig.cmake
but not include/vtk-6.3 (because the source tree will be used for the
include directories).  The include/vtk-6.3 directory only appears in
an install tree, in which case VTKConfig.cmake would be in a different
location.

What commands are you using to build/install VTK?

Thanks,
-Brad

From matt.mccormick at kitware.com  Tue Nov 10 13:31:28 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 10 Nov 2015 13:31:28 -0500
Subject: [ITK] [ITK-dev]   Patches for the 4.8.2 release
In-Reply-To: <CAJFNcCRy4ecqQssKhvWmdfEQ89oiMNoqE6vPBjyAPKjgdwyY5g@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
 <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>
 <CALzTN-SHd-D3K5D1Zt9k8gLuEtPRyLBTCY8aWrA3V7aN6XXXGA@mail.gmail.com>
 <CAJFNcCRLyXzCFOW9FR5YXYdGS8iRnGfDSLvkDCT+A3aDS4Afgg@mail.gmail.com>
 <CAJFNcCRy4ecqQssKhvWmdfEQ89oiMNoqE6vPBjyAPKjgdwyY5g@mail.gmail.com>
Message-ID: <CALzTN-RZFtHZ_ATYh_qLAvne+9pgf2sr1Rc2jSqFz1D2Su357w@mail.gmail.com>

Excellent, thank you Simon.

The patch has been merged into the master branch.  We will merge it
into the release branch tomorrow if no issues show up on the Nightly
dashboard:

  https://open.cdash.org/index.php?project=Insight

Thanks,
Matt

On Tue, Nov 10, 2015 at 12:13 PM, Simon Alexander <skalexander at gmail.com> wrote:
> sorry, issue is 20381
>
> On Tue, 10 Nov 2015 at 12:13 Simon Alexander <skalexander at gmail.com> wrote:
>>
>> I had already done that, the problem was elsewhere but I have now sorted
>> it.
>>
>> Issue is 20301.
>>
>> I added Matt as reviewer but couldn't find Dzenan in the system.
>>
>>
>>
>> On Tue, 10 Nov 2015 at 11:59 Matt McCormick <matt.mccormick at kitware.com>
>> wrote:
>>>
>>> Hi Simon,
>>>
>>> Great!
>>>
>>> You should be able to sign up for Gerrit, then add your SSH key to
>>> your account and push.  Instructions are here:
>>>
>>>   https://cmake.org/Wiki/ITK/Git/Account#Gerrit
>>>
>>> Please let us know if you have any issues.
>>>
>>> Thanks,
>>> Matt
>>>
>>> On Tue, Nov 10, 2015 at 11:35 AM, Simon Alexander <skalexander at gmail.com>
>>> wrote:
>>> > Ok, I have a patch ready off the release branch.
>>> >
>>> > I don't think I have push access for gerrit though, is there a way to
>>> > just
>>> > start a review from a patch that I am missing in the linked docs?
>>> >
>>> > On Mon, 9 Nov 2015 at 17:08 Matt McCormick <matt.mccormick at kitware.com>
>>> > wrote:
>>> >>
>>> >> Great!
>>> >>
>>> >> Instructions can be found here:
>>> >>
>>> >>   http://www.itk.org/Wiki/ITK/Git
>>> >>
>>> >> Please branch off of the "release" branch.
>>> >>
>>> >> Thanks,
>>> >> Matt
>>> >>
>>> >> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander
>>> >> <skalexander at gmail.com>
>>> >> wrote:
>>> >> > Ok, I'll dig up my notes on how to do that and submit it shortly.
>>> >> > Should
>>> >> > this be done against trunk or a release branch ?
>>> >> >
>>> >> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick
>>> >> > <matt.mccormick at kitware.com>
>>> >> > wrote:
>>> >> >>
>>> >> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
>>> >> >> merged to make the release. As Dzenan recommends, please submit the
>>> >> >> patch to Gerrit with a verification for
>>> >> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
>>> >> >>
>>> >> >> Thanks,
>>> >> >> Matt
>>> >> >>
>>> >> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com>
>>> >> >> wrote:
>>> >> >> > Better submit the usual way. I doubt Matt will include it without
>>> >> >> > the
>>> >> >> > usual
>>> >> >> > testing. Add me and Matt as reviewers.
>>> >> >> >
>>> >> >> > Regards,
>>> >> >> > D?enan
>>> >> >> >
>>> >> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander
>>> >> >> > <skalexander at gmail.com>
>>> >> >> > wrote:
>>> >> >> >>
>>> >> >> >> We found this today (patch attached).   If 4.8.2 is right around
>>> >> >> >> the
>>> >> >> >> corner, can you consider it for inclusion.  If time isn't so
>>> >> >> >> short,
>>> >> >> >> I'll
>>> >> >> >> submit the usual way....
>>> >> >> >>
>>> >> >> >> cheers,
>>> >> >> >> Simon
>>> >> >> >>
>>> >> >> >>
>>> >> >> >>
>>> >> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick
>>> >> >> >> <matt.mccormick at kitware.com>
>>> >> >> >> wrote:
>>> >> >> >>>
>>> >> >> >>> Thanks!  Added.
>>> >> >> >>>
>>> >> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
>>> >> >> >>> <blowekamp at mail.nih.gov>
>>> >> >> >>> wrote:
>>> >> >> >>> > We should consider this:
>>> >> >> >>> > http://review.source.kitware.com/#/c/20369/
>>> >> >> >>> >
>>> >> >> >>> > This helps with using VS2015 GUI.
>>> >> >> >>> >
>>> >> >> >>> >
>>> >> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
>>> >> >> >>> > <matt.mccormick at kitware.com>
>>> >> >> >>> > wrote:
>>> >> >> >>> >
>>> >> >> >>> >> Hi,
>>> >> >> >>> >>
>>> >> >> >>> >> It is time to make the 4.8.2 release. The following patches
>>> >> >> >>> >> are
>>> >> >> >>> >> new
>>> >> >> >>> >> on
>>> >> >> >>> >> the release branch since 4.8.1.  Is there anything missing?
>>> >> >> >>> >>
>>> >> >> >>> >> Thanks,
>>> >> >> >>> >> Matt
>>> >> >> >>> >>
>>> >> >> >>> >> Bradley Lowekamp (4):
>>> >> >> >>> >>      BUG: Avoid potential exception in
>>> >> >> >>> >> itk::Object::UnRegister
>>> >> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
>>> >> >> >>> >> construction
>>> >> >> >>> >>      BUG: Use const pointer in Set method for constant
>>> >> >> >>> >> ReferenceImage
>>> >> >> >>> >> ivar
>>> >> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>> >> >> >>> >> Threshold
>>> >> >> >>> >> range
>>> >> >> >>> >>
>>> >> >> >>> >> Davis Vigneault (3):
>>> >> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>> >> >> >>> >> c++11
>>> >> >> >>> >>      DOC: Expanded Canny Edge Detection Example
>>> >> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with
>>> >> >> >>> >> c++11
>>> >> >> >>> >>
>>> >> >> >>> >> Eugene Prilepin (1):
>>> >> >> >>> >>      BUG: Fix a template name formation in python wrappings
>>> >> >> >>> >>
>>> >> >> >>> >> Hans Johnson (5):
>>> >> >> >>> >>      STYLE: Minor code style issues for MGHIO
>>> >> >> >>> >>      COMP: Update to version for WikiExamples
>>> >> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
>>> >> >> >>> >>      ENH: Update MGHIO to be shared lib
>>> >> >> >>> >>      BUG: Fix MGHIO to fix write failures
>>> >> >> >>> >>
>>> >> >> >>> >> Hyun Jae Kang (4):
>>> >> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>> >> >> >>> >>      BUG: Remove std::cout calls from class
>>> >> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>> >> >> >>> >> VTK
>>> >> >> >>> >> file
>>> >> >> >>> >> header.
>>> >> >> >>> >>      BUG: Fixed older XCode linking error
>>> >> >> >>> >>
>>> >> >> >>> >> Matthew McCormick (8):
>>> >> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>> >> >> >>> >>      COMP: Remove unused argument in
>>> >> >> >>> >> ConditionVariableNoThreads.
>>> >> >> >>> >>      DOC: Correct spelling of Continuous.
>>> >> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument
>>> >> >> >>> >> type.
>>> >> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
>>> >> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>> >> >> >>> >> sys.path
>>> >> >> >>> >>      COMP: Set CMP0054 to new.
>>> >> >> >>> >>
>>> >> >> >>> >> Michka Popoff (1):
>>> >> >> >>> >>      COMP: Disable incompatible modules when using Python 3
>>> >> >> >>> >> wrapping
>>> >> >> >>> >>
>>> >> >> >>> >> Mikhail Isakov (1):
>>> >> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>> >> >> >>> >> baseline
>>> >> >> >>> >> image
>>> >> >> >>> >> _______________________________________________
>>> >> >> >>> >> Powered by www.kitware.com
>>> >> >> >>> >>
>>> >> >> >>> >> Visit other Kitware open-source projects at
>>> >> >> >>> >> http://www.kitware.com/opensource/opensource.html
>>> >> >> >>> >>
>>> >> >> >>> >> Kitware offers ITK Training Courses, for more information
>>> >> >> >>> >> visit:
>>> >> >> >>> >> http://kitware.com/products/protraining.php
>>> >> >> >>> >>
>>> >> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
>>> >> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
>>> >> >> >>> >>
>>> >> >> >>> >> Follow this link to subscribe/unsubscribe:
>>> >> >> >>> >>
>>> >> >> >>> >> http://public.kitware.com/mailman/listinfo/insight-developers
>>> >> >> >>> >
>>> >> >> >>> _______________________________________________
>>> >> >> >>> Powered by www.kitware.com
>>> >> >> >>>
>>> >> >> >>> Visit other Kitware open-source projects at
>>> >> >> >>> http://www.kitware.com/opensource/opensource.html
>>> >> >> >>>
>>> >> >> >>> Kitware offers ITK Training Courses, for more information
>>> >> >> >>> visit:
>>> >> >> >>> http://kitware.com/products/protraining.php
>>> >> >> >>>
>>> >> >> >>> Please keep messages on-topic and check the ITK FAQ at:
>>> >> >> >>> http://www.itk.org/Wiki/ITK_FAQ
>>> >> >> >>>
>>> >> >> >>> Follow this link to subscribe/unsubscribe:
>>> >> >> >>> http://public.kitware.com/mailman/listinfo/insight-developers
>>> >> >> >>
>>> >> >> >>
>>> >> >> >> _______________________________________________
>>> >> >> >> Powered by www.kitware.com
>>> >> >> >>
>>> >> >> >> Visit other Kitware open-source projects at
>>> >> >> >> http://www.kitware.com/opensource/opensource.html
>>> >> >> >>
>>> >> >> >> Kitware offers ITK Training Courses, for more information visit:
>>> >> >> >> http://kitware.com/products/protraining.php
>>> >> >> >>
>>> >> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>> >> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>> >> >> >>
>>> >> >> >> Follow this link to subscribe/unsubscribe:
>>> >> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
>>> >> >> >>
>>> >> >> >> _______________________________________________
>>> >> >> >> Community mailing list
>>> >> >> >> Community at itk.org
>>> >> >> >> http://public.kitware.com/mailman/listinfo/community
>>> >> >> >>
>>> >> >> >
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From skalexander at gmail.com  Tue Nov 10 13:42:03 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Tue, 10 Nov 2015 18:42:03 +0000
Subject: [ITK] [ITK-dev]   Patches for the 4.8.2 release
In-Reply-To: <CALzTN-RZFtHZ_ATYh_qLAvne+9pgf2sr1Rc2jSqFz1D2Su357w@mail.gmail.com>
References: <CALzTN-T2xyJi0kQo-VZ=7ZHTWqEcVt3LobOwF0BGPjz_ocJghQ@mail.gmail.com>
 <B5ED7D42-6B31-4C55-B731-EB14B480F43F@mail.nih.gov>
 <CALzTN-SFDSmpoGi6gqNhExewf9vc8YPGpQmcqq78OgxD+LO7Vg@mail.gmail.com>
 <CAJFNcCRVbov_0TeAAZVjOoGS3fxhoo=d5rRzSOHneGNbm9L+Zg@mail.gmail.com>
 <CAPf2UMTnHCp6YUK53XSXquZD38jYSi5naJMN2YtobdrT6MVj6w@mail.gmail.com>
 <CALzTN-QSJ8+=PpgNcqXG1pH7ThVi_ZdS6enaNThi+g3Ao5=Dbg@mail.gmail.com>
 <CAJFNcCSqoD7cgUTz2YWbRdeRbvPLNZdfAqNfvaeQTVH-RDUXcQ@mail.gmail.com>
 <CALzTN-SDgLoo=nJkJDX-UVaAj-=_HRF+4GZsX1GhFLLBqtkSPg@mail.gmail.com>
 <CAJFNcCRpUFEWAPL5wM7rfVoeVH68hvJpYGdsa+AcZ+SvdKCciQ@mail.gmail.com>
 <CALzTN-SHd-D3K5D1Zt9k8gLuEtPRyLBTCY8aWrA3V7aN6XXXGA@mail.gmail.com>
 <CAJFNcCRLyXzCFOW9FR5YXYdGS8iRnGfDSLvkDCT+A3aDS4Afgg@mail.gmail.com>
 <CAJFNcCRy4ecqQssKhvWmdfEQ89oiMNoqE6vPBjyAPKjgdwyY5g@mail.gmail.com>
 <CALzTN-RZFtHZ_ATYh_qLAvne+9pgf2sr1Rc2jSqFz1D2Su357w@mail.gmail.com>
Message-ID: <CAJFNcCS7exinFnkH-gwRHShkk2XXN+S20gYcLXZdk8f+Z0wvpw@mail.gmail.com>

Thanks, all.

On Tue, 10 Nov 2015 at 13:31 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Excellent, thank you Simon.
>
> The patch has been merged into the master branch.  We will merge it
> into the release branch tomorrow if no issues show up on the Nightly
> dashboard:
>
>   https://open.cdash.org/index.php?project=Insight
>
> Thanks,
> Matt
>
> On Tue, Nov 10, 2015 at 12:13 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
> > sorry, issue is 20381
> >
> > On Tue, 10 Nov 2015 at 12:13 Simon Alexander <skalexander at gmail.com>
> wrote:
> >>
> >> I had already done that, the problem was elsewhere but I have now sorted
> >> it.
> >>
> >> Issue is 20301.
> >>
> >> I added Matt as reviewer but couldn't find Dzenan in the system.
> >>
> >>
> >>
> >> On Tue, 10 Nov 2015 at 11:59 Matt McCormick <matt.mccormick at kitware.com
> >
> >> wrote:
> >>>
> >>> Hi Simon,
> >>>
> >>> Great!
> >>>
> >>> You should be able to sign up for Gerrit, then add your SSH key to
> >>> your account and push.  Instructions are here:
> >>>
> >>>   https://cmake.org/Wiki/ITK/Git/Account#Gerrit
> >>>
> >>> Please let us know if you have any issues.
> >>>
> >>> Thanks,
> >>> Matt
> >>>
> >>> On Tue, Nov 10, 2015 at 11:35 AM, Simon Alexander <
> skalexander at gmail.com>
> >>> wrote:
> >>> > Ok, I have a patch ready off the release branch.
> >>> >
> >>> > I don't think I have push access for gerrit though, is there a way to
> >>> > just
> >>> > start a review from a patch that I am missing in the linked docs?
> >>> >
> >>> > On Mon, 9 Nov 2015 at 17:08 Matt McCormick <
> matt.mccormick at kitware.com>
> >>> > wrote:
> >>> >>
> >>> >> Great!
> >>> >>
> >>> >> Instructions can be found here:
> >>> >>
> >>> >>   http://www.itk.org/Wiki/ITK/Git
> >>> >>
> >>> >> Please branch off of the "release" branch.
> >>> >>
> >>> >> Thanks,
> >>> >> Matt
> >>> >>
> >>> >> On Mon, Nov 9, 2015 at 4:40 PM, Simon Alexander
> >>> >> <skalexander at gmail.com>
> >>> >> wrote:
> >>> >> > Ok, I'll dig up my notes on how to do that and submit it shortly.
> >>> >> > Should
> >>> >> > this be done against trunk or a release branch ?
> >>> >> >
> >>> >> > On Mon, 9 Nov 2015 at 16:19 Matt McCormick
> >>> >> > <matt.mccormick at kitware.com>
> >>> >> > wrote:
> >>> >> >>
> >>> >> >> Thanks for the patch, Simon! Yes, we can wait until this patch is
> >>> >> >> merged to make the release. As Dzenan recommends, please submit
> the
> >>> >> >> patch to Gerrit with a verification for
> >>> >> >> itk::TriangleCell::EvaluatePosition in itkTriangleCellTest.cxx.
> >>> >> >>
> >>> >> >> Thanks,
> >>> >> >> Matt
> >>> >> >>
> >>> >> >> On Mon, Nov 9, 2015 at 3:54 PM, D?enan Zuki? <dzenanz at gmail.com>
> >>> >> >> wrote:
> >>> >> >> > Better submit the usual way. I doubt Matt will include it
> without
> >>> >> >> > the
> >>> >> >> > usual
> >>> >> >> > testing. Add me and Matt as reviewers.
> >>> >> >> >
> >>> >> >> > Regards,
> >>> >> >> > D?enan
> >>> >> >> >
> >>> >> >> > On Mon, Nov 9, 2015 at 3:18 PM, Simon Alexander
> >>> >> >> > <skalexander at gmail.com>
> >>> >> >> > wrote:
> >>> >> >> >>
> >>> >> >> >> We found this today (patch attached).   If 4.8.2 is right
> around
> >>> >> >> >> the
> >>> >> >> >> corner, can you consider it for inclusion.  If time isn't so
> >>> >> >> >> short,
> >>> >> >> >> I'll
> >>> >> >> >> submit the usual way....
> >>> >> >> >>
> >>> >> >> >> cheers,
> >>> >> >> >> Simon
> >>> >> >> >>
> >>> >> >> >>
> >>> >> >> >>
> >>> >> >> >> On Mon, 9 Nov 2015 at 09:57 Matt McCormick
> >>> >> >> >> <matt.mccormick at kitware.com>
> >>> >> >> >> wrote:
> >>> >> >> >>>
> >>> >> >> >>> Thanks!  Added.
> >>> >> >> >>>
> >>> >> >> >>> On Mon, Nov 9, 2015 at 9:45 AM, Bradley Lowekamp
> >>> >> >> >>> <blowekamp at mail.nih.gov>
> >>> >> >> >>> wrote:
> >>> >> >> >>> > We should consider this:
> >>> >> >> >>> > http://review.source.kitware.com/#/c/20369/
> >>> >> >> >>> >
> >>> >> >> >>> > This helps with using VS2015 GUI.
> >>> >> >> >>> >
> >>> >> >> >>> >
> >>> >> >> >>> > On Nov 9, 2015, at 9:28 AM, Matt McCormick
> >>> >> >> >>> > <matt.mccormick at kitware.com>
> >>> >> >> >>> > wrote:
> >>> >> >> >>> >
> >>> >> >> >>> >> Hi,
> >>> >> >> >>> >>
> >>> >> >> >>> >> It is time to make the 4.8.2 release. The following
> patches
> >>> >> >> >>> >> are
> >>> >> >> >>> >> new
> >>> >> >> >>> >> on
> >>> >> >> >>> >> the release branch since 4.8.1.  Is there anything
> missing?
> >>> >> >> >>> >>
> >>> >> >> >>> >> Thanks,
> >>> >> >> >>> >> Matt
> >>> >> >> >>> >>
> >>> >> >> >>> >> Bradley Lowekamp (4):
> >>> >> >> >>> >>      BUG: Avoid potential exception in
> >>> >> >> >>> >> itk::Object::UnRegister
> >>> >> >> >>> >>      BUG: Avoid null deference in PrintSelf with default
> >>> >> >> >>> >> construction
> >>> >> >> >>> >>      BUG: Use const pointer in Set method for constant
> >>> >> >> >>> >> ReferenceImage
> >>> >> >> >>> >> ivar
> >>> >> >> >>> >>      BUG: Fix segfault when with empty IsolatedWatershed
> >>> >> >> >>> >> Threshold
> >>> >> >> >>> >> range
> >>> >> >> >>> >>
> >>> >> >> >>> >> Davis Vigneault (3):
> >>> >> >> >>> >>      COMP: Warnings in itkVTKImageExport when compiling
> with
> >>> >> >> >>> >> c++11
> >>> >> >> >>> >>      DOC: Expanded Canny Edge Detection Example
> >>> >> >> >>> >>      COMP: Warnings in FFTW Classes when compiling with
> >>> >> >> >>> >> c++11
> >>> >> >> >>> >>
> >>> >> >> >>> >> Eugene Prilepin (1):
> >>> >> >> >>> >>      BUG: Fix a template name formation in python
> wrappings
> >>> >> >> >>> >>
> >>> >> >> >>> >> Hans Johnson (5):
> >>> >> >> >>> >>      STYLE: Minor code style issues for MGHIO
> >>> >> >> >>> >>      COMP: Update to version for WikiExamples
> >>> >> >> >>> >>      ENH: Update Sphinx for ITK 4.8.0
> >>> >> >> >>> >>      ENH: Update MGHIO to be shared lib
> >>> >> >> >>> >>      BUG: Fix MGHIO to fix write failures
> >>> >> >> >>> >>
> >>> >> >> >>> >> Hyun Jae Kang (4):
> >>> >> >> >>> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >>> >> >> >>> >>      BUG: Remove std::cout calls from class
> >>> >> >> >>> >>      BUG: itkVTKImageIO class does not handle blank lines
> in
> >>> >> >> >>> >> VTK
> >>> >> >> >>> >> file
> >>> >> >> >>> >> header.
> >>> >> >> >>> >>      BUG: Fixed older XCode linking error
> >>> >> >> >>> >>
> >>> >> >> >>> >> Matthew McCormick (8):
> >>> >> >> >>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >>> >> >> >>> >>      COMP: Remove unused argument in
> >>> >> >> >>> >> ConditionVariableNoThreads.
> >>> >> >> >>> >>      DOC: Correct spelling of Continuous.
> >>> >> >> >>> >>      COMP: Fix KernelTransform SetFixedParameters argument
> >>> >> >> >>> >> type.
> >>> >> >> >>> >>      STYLE: Use prefix increment operator in ImageBase.
> >>> >> >> >>> >>      COMP: Use ITK's pygccxml by correctly setting up the
> >>> >> >> >>> >> sys.path
> >>> >> >> >>> >>      COMP: Set CMP0054 to new.
> >>> >> >> >>> >>
> >>> >> >> >>> >> Michka Popoff (1):
> >>> >> >> >>> >>      COMP: Disable incompatible modules when using Python
> 3
> >>> >> >> >>> >> wrapping
> >>> >> >> >>> >>
> >>> >> >> >>> >> Mikhail Isakov (1):
> >>> >> >> >>> >>      BUG: DiffusionTensor3DReconstruction segfault if no
> >>> >> >> >>> >> baseline
> >>> >> >> >>> >> image
> >>> >> >> >>> >> _______________________________________________
> >>> >> >> >>> >> Powered by www.kitware.com
> >>> >> >> >>> >>
> >>> >> >> >>> >> Visit other Kitware open-source projects at
> >>> >> >> >>> >> http://www.kitware.com/opensource/opensource.html
> >>> >> >> >>> >>
> >>> >> >> >>> >> Kitware offers ITK Training Courses, for more information
> >>> >> >> >>> >> visit:
> >>> >> >> >>> >> http://kitware.com/products/protraining.php
> >>> >> >> >>> >>
> >>> >> >> >>> >> Please keep messages on-topic and check the ITK FAQ at:
> >>> >> >> >>> >> http://www.itk.org/Wiki/ITK_FAQ
> >>> >> >> >>> >>
> >>> >> >> >>> >> Follow this link to subscribe/unsubscribe:
> >>> >> >> >>> >>
> >>> >> >> >>> >>
> http://public.kitware.com/mailman/listinfo/insight-developers
> >>> >> >> >>> >
> >>> >> >> >>> _______________________________________________
> >>> >> >> >>> Powered by www.kitware.com
> >>> >> >> >>>
> >>> >> >> >>> Visit other Kitware open-source projects at
> >>> >> >> >>> http://www.kitware.com/opensource/opensource.html
> >>> >> >> >>>
> >>> >> >> >>> Kitware offers ITK Training Courses, for more information
> >>> >> >> >>> visit:
> >>> >> >> >>> http://kitware.com/products/protraining.php
> >>> >> >> >>>
> >>> >> >> >>> Please keep messages on-topic and check the ITK FAQ at:
> >>> >> >> >>> http://www.itk.org/Wiki/ITK_FAQ
> >>> >> >> >>>
> >>> >> >> >>> Follow this link to subscribe/unsubscribe:
> >>> >> >> >>>
> http://public.kitware.com/mailman/listinfo/insight-developers
> >>> >> >> >>
> >>> >> >> >>
> >>> >> >> >> _______________________________________________
> >>> >> >> >> Powered by www.kitware.com
> >>> >> >> >>
> >>> >> >> >> Visit other Kitware open-source projects at
> >>> >> >> >> http://www.kitware.com/opensource/opensource.html
> >>> >> >> >>
> >>> >> >> >> Kitware offers ITK Training Courses, for more information
> visit:
> >>> >> >> >> http://kitware.com/products/protraining.php
> >>> >> >> >>
> >>> >> >> >> Please keep messages on-topic and check the ITK FAQ at:
> >>> >> >> >> http://www.itk.org/Wiki/ITK_FAQ
> >>> >> >> >>
> >>> >> >> >> Follow this link to subscribe/unsubscribe:
> >>> >> >> >> http://public.kitware.com/mailman/listinfo/insight-developers
> >>> >> >> >>
> >>> >> >> >> _______________________________________________
> >>> >> >> >> Community mailing list
> >>> >> >> >> Community at itk.org
> >>> >> >> >> http://public.kitware.com/mailman/listinfo/community
> >>> >> >> >>
> >>> >> >> >
>
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From matimontg at gmail.com  Tue Nov 10 15:18:48 2015
From: matimontg at gmail.com (Matias Montroull)
Date: Tue, 10 Nov 2015 20:18:48 +0000
Subject: [ITK] [ITK-users] Pointset registration
Message-ID: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>

Hi,

I have 2 sets of points (one is points on an image and another one is
points on a NDI tracker) and I need to obtain the transformation matrix.
What would be the best method? I'm currently using a Solver but I'd like to
implement this using ITK and better if it is SimpleITK.

Thank you!

Matias.
-- 
Matias
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From dzenanz at gmail.com  Tue Nov 10 16:15:49 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Tue, 10 Nov 2015 16:15:49 -0500
Subject: [ITK] [ITK-users] Pointset registration
In-Reply-To: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
Message-ID: <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>

Have you seen these two examples:
http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html

HTH

On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull <matimontg at gmail.com>
wrote:

> Hi,
>
> I have 2 sets of points (one is points on an image and another one is
> points on a NDI tracker) and I need to obtain the transformation matrix.
> What would be the best method? I'm currently using a Solver but I'd like to
> implement this using ITK and better if it is SimpleITK.
>
> Thank you!
>
> Matias.
> --
> Matias
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
>
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From matt.mccormick at kitware.com  Tue Nov 10 17:31:48 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 10 Nov 2015 17:31:48 -0500
Subject: [ITK] [ITK-users] Problem with configure with 4.8.1 and gcc 5
In-Reply-To: <CAC+uqGEjJgtdF9FyNiTA4J3c9ZGW8F8ub4HVYELYtuPgt99+rA@mail.gmail.com>
References: <1792052.Ej4RIIi5E6@hinata>
 <CAC+uqGEjJgtdF9FyNiTA4J3c9ZGW8F8ub4HVYELYtuPgt99+rA@mail.gmail.com>
Message-ID: <CALzTN-SBtY5KJfO5pSjaueRdpgBGEwQ4Stg5j3eHVQym5s3nnA@mail.gmail.com>

Hi Yi and Alfonso,

Thanks for discussing the issue.

This error is due to faulty detection of the gold linker.  Please
review this patch, which addresses the issue:

  http://review.source.kitware.com/#/c/20384/

This will fix the detection of the gold linker, and avoid trying to
use it.  As a workaround, you can also install the package that
provides the gold linker.  For example, on Opensuse Tumbleweed (h/t
Ricardo Ortiz)

  zypper install binutils-gold

The gold linker results in faster build times.

Regarding the ITK 4.8 archive sizes, the smaller library source code
is intentional; the majority of the content was test data, which was
moved to a separate archive, InsightData-4.8.0.

Thanks,
Matt

On Tue, Nov 10, 2015 at 9:21 AM, Yi Gao <gaoyi.cn at gmail.com> wrote:
> Dear Alfonso and All,
>
> 1. I got the same error with ITK 4.8.1 gcc 4.8.5 under CentOS 6.5 with cmake
> binary 3.3 and 3.4rc3.
>
> 2. On another machine with Mint 17.2, ITK 4.8.1, gcc 4.8.4, cmake 3.3,
> everything is fine.
>
> I made a minimal test cmakelists to run the testBigEndian function in cmake
> and that works, but when that's in the ITK cmakelists somewhere goes wrong.
>
> After trying different things for several hours, my solution to the 1st
> problem was: use ITK 4.7.2 and everything is fine (going back to ITK 4.6
> works for me too).
>
> I also noticed that ITK 4.8.1 is much smaller than 4.7 (>200M down to 16M).
> This a dramatic change in size.
>
> Best,
> yi
>
> On Tue, Oct 6, 2015 at 10:20 AM, Alfonso Castro <alfonso.castro at udc.es>
> wrote:
>>
>> Hi.
>>
>> I tried to compiled in OpenSuSE Tumbleweed ITK 4.8.1 but I obtained an
>> error
>> in configure:
>>
>>  CMake Error at /usr/share/cmake/Modules/TestBigEndian.cmake:51 (message):
>>    no suitable type found
>>  Call Stack (most recent call first):
>>    Modules/ThirdParty/VNL/src/vxl/config/cmake/config/CMakeLists.txt:285
>> (TEST_BIG_ENDIAN)
>>
>> However, the configuration and compile are without a problem using clang.
>>
>> The info of gcc version is:
>>
>> Using built-in specs.
>> COLLECT_GCC=gcc
>> COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/5/lto-wrapper
>> Target: x86_64-suse-linux
>> Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --
>> mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64
>> --enable-
>> languages=c,c++,objc,fortran,obj-c++,java,ada,go --enable-checking=release
>> --
>> with-gxx-include-dir=/usr/include/c++/5 --enable-ssp --disable-libssp --
>> disable-libvtv --enable-libmpx --disable-plugin --with-bugurl=http://
>> bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --with-
>> slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit
>> --enable-libstdcxx-
>> allocator=new --disable-libstdcxx-pch
>> --enable-version-specific-runtime-libs
>> --enable-linker-build-id --enable-linux-futex --program-suffix=-5
>> --without-
>> system-libunwind --enable-multilib --with-arch-32=i586 --with-tune=generic
>> --
>> build=x86_64-suse-linux --host=x86_64-suse-linux
>> Thread model: posix
>> gcc version 5.1.1 20150713 [gcc-5-branch revision 225736] (SUSE Linux)
>>
>> VTK 6.3 compile without a problem using gcc 5.
>>
>> The info of clang version is:
>>
>> clang version 3.7.0 (tags/RELEASE_370/final 246586)
>> Target: x86_64-suse-linux
>> Thread model: posix
>> Found candidate GCC installation:
>> /usr/bin/../lib64/gcc/x86_64-suse-linux/4.8
>> Found candidate GCC installation:
>> /usr/bin/../lib64/gcc/x86_64-suse-linux/5
>> Found candidate GCC installation: /usr/lib64/gcc/x86_64-suse-linux/4.8
>> Found candidate GCC installation: /usr/lib64/gcc/x86_64-suse-linux/5
>> Selected GCC installation: /usr/bin/../lib64/gcc/x86_64-suse-linux/5
>> Candidate multilib: .;@m64
>> Selected multilib: .;@m64
>>
>> Thanks in advance.
>>
>> Alfonso Castro
>> Faculty of Computer Science
>> University of A Coruna
>>
>>
>>
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-users
>
>
>
>
>
>
> --
> Yi Gao, Ph.D.
> Assistant Professor
> Department of Biomedical Informatics
> Departments of Computer Science and Applied Mathematics & Statistics
> Stony Brook University | The  State University of New York
> Stony Brook, New York, 11794
> 631-632-9540
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
_____________________________________
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From mlt.khawla at gmail.com  Wed Nov 11 03:33:17 2015
From: mlt.khawla at gmail.com (Daoued23)
Date: Wed, 11 Nov 2015 01:33:17 -0700 (MST)
Subject: [ITK] [ITK-users] itk::BinaryThinningImageFilter3D
Message-ID: <1447230797460-36449.post@n7.nabble.com>

Hello everyone,

I want to get an Hybrid Skeleton. So I started by testing itk's filter
"itk::BinaryThinningImageFilter3D" to obtain the curve skeleton, but it
doesn't seem to work. Here is my code.

#include "itkImage.h"
#include "itkImageFileReader.h"
#include "itkImageFileWriter.h"

#include "itkConnectedThresholdImageFilter.h"
#include "itkImageRegionIterator.h"
#include "itkBinaryThinningImageFilter3D.h"

#include <iostream>
#include <stdlib.h>  
using namespace std;

int main(int argc, char* argv[])
{
  // Verify the number of parameters in the command line
  if( argc <= 2 )
  {
    std::cerr << "Usage: " << std::endl;
    std::cerr << argv[0] << " inputImageFile outputImageFile" << std::endl;
    return EXIT_FAILURE;
  }
  char* infilename  = argv[1];
  char* outfilename = argv[2];

  const   unsigned int Dimension = 3;
  typedef signed short PixelType;   
  typedef itk::Image< PixelType, Dimension > ImageType;

  // Read image
  typedef itk::ImageFileReader< ImageType > ReaderType;
  ReaderType::Pointer reader = ReaderType::New();
  reader->SetFileName( infilename );
  try
  {
    reader->Update();
  }
  catch (itk::ExceptionObject &ex)
  {
    std::cout << ex << std::endl;
    return EXIT_FAILURE;
  }
  cout << infilename << " sucessfully read." << endl;

  // Define the thinning filter
  typedef itk::BinaryThinningImageFilter3D< ImageType, ImageType >
ThinningFilterType;
  ThinningFilterType::Pointer thinningFilter = ThinningFilterType::New();
  thinningFilter->SetInput( reader->GetOutput() );
  thinningFilter->Update();

  // output to file
  typedef itk::ImageFileWriter< ImageType > WriterType;
  WriterType::Pointer writer = WriterType::New();
  writer->SetInput( thinningFilter->GetOutput() );
  writer->SetFileName( outfilename );

  try
  {
    writer->Update();
  }
  catch (itk::ExceptionObject &ex)
  {
    std::cout << ex << std::endl;
    return EXIT_FAILURE;
  }
  cout << outfilename << " sucessfully written." << endl;

  cout << "Program terminated normally." << endl;
  return EXIT_SUCCESS;
}


And here is the volume I get in return, the initial volume is a region of
trabecular bone of size 30x30x30 voxels.
<http://itk-users.7.n7.nabble.com/file/n36449/thinningitk.png> 



--
View this message in context: http://itk-users.7.n7.nabble.com/itk-BinaryThinningImageFilter3D-tp36449.html
Sent from the ITK - Users mailing list archive at Nabble.com.
_____________________________________
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From matt.mccormick at kitware.com  Wed Nov 11 07:45:28 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 11 Nov 2015 07:45:28 -0500
Subject: [ITK] [ITK-users] itk::BinaryThinningImageFilter3D
In-Reply-To: <1447230797460-36449.post@n7.nabble.com>
References: <1447230797460-36449.post@n7.nabble.com>
Message-ID: <CALzTN-QBNy-rhwcK==3ZMJZcLRvRtWnvfJmGu8KLgLn-cFuBEQ@mail.gmail.com>

Hello,

>From the screenshot, it is unclear whether the thinning worked or not
-- it would be better to visualize in 3D instead of 2D planes.

HTH,
Matt

On Wed, Nov 11, 2015 at 3:33 AM, Daoued23 <mlt.khawla at gmail.com> wrote:
> Hello everyone,
>
> I want to get an Hybrid Skeleton. So I started by testing itk's filter
> "itk::BinaryThinningImageFilter3D" to obtain the curve skeleton, but it
> doesn't seem to work. Here is my code.
>
> #include "itkImage.h"
> #include "itkImageFileReader.h"
> #include "itkImageFileWriter.h"
>
> #include "itkConnectedThresholdImageFilter.h"
> #include "itkImageRegionIterator.h"
> #include "itkBinaryThinningImageFilter3D.h"
>
> #include <iostream>
> #include <stdlib.h>
> using namespace std;
>
> int main(int argc, char* argv[])
> {
>   // Verify the number of parameters in the command line
>   if( argc <= 2 )
>   {
>     std::cerr << "Usage: " << std::endl;
>     std::cerr << argv[0] << " inputImageFile outputImageFile" << std::endl;
>     return EXIT_FAILURE;
>   }
>   char* infilename  = argv[1];
>   char* outfilename = argv[2];
>
>   const   unsigned int Dimension = 3;
>   typedef signed short PixelType;
>   typedef itk::Image< PixelType, Dimension > ImageType;
>
>   // Read image
>   typedef itk::ImageFileReader< ImageType > ReaderType;
>   ReaderType::Pointer reader = ReaderType::New();
>   reader->SetFileName( infilename );
>   try
>   {
>     reader->Update();
>   }
>   catch (itk::ExceptionObject &ex)
>   {
>     std::cout << ex << std::endl;
>     return EXIT_FAILURE;
>   }
>   cout << infilename << " sucessfully read." << endl;
>
>   // Define the thinning filter
>   typedef itk::BinaryThinningImageFilter3D< ImageType, ImageType >
> ThinningFilterType;
>   ThinningFilterType::Pointer thinningFilter = ThinningFilterType::New();
>   thinningFilter->SetInput( reader->GetOutput() );
>   thinningFilter->Update();
>
>   // output to file
>   typedef itk::ImageFileWriter< ImageType > WriterType;
>   WriterType::Pointer writer = WriterType::New();
>   writer->SetInput( thinningFilter->GetOutput() );
>   writer->SetFileName( outfilename );
>
>   try
>   {
>     writer->Update();
>   }
>   catch (itk::ExceptionObject &ex)
>   {
>     std::cout << ex << std::endl;
>     return EXIT_FAILURE;
>   }
>   cout << outfilename << " sucessfully written." << endl;
>
>   cout << "Program terminated normally." << endl;
>   return EXIT_SUCCESS;
> }
>
>
> And here is the volume I get in return, the initial volume is a region of
> trabecular bone of size 30x30x30 voxels.
> <http://itk-users.7.n7.nabble.com/file/n36449/thinningitk.png>
>
>
>
> --
> View this message in context: http://itk-users.7.n7.nabble.com/itk-BinaryThinningImageFilter3D-tp36449.html
> Sent from the ITK - Users mailing list archive at Nabble.com.
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
_____________________________________
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From franciscolopezdelafranca at gmail.com  Wed Nov 11 08:01:40 2015
From: franciscolopezdelafranca at gmail.com (Francisco Lopez de la Franca)
Date: Wed, 11 Nov 2015 14:01:40 +0100
Subject: [ITK] [ITK-users] itk::BinaryThinningImageFilter3D
In-Reply-To: <CALzTN-QBNy-rhwcK==3ZMJZcLRvRtWnvfJmGu8KLgLn-cFuBEQ@mail.gmail.com>
References: <1447230797460-36449.post@n7.nabble.com>
 <CALzTN-QBNy-rhwcK==3ZMJZcLRvRtWnvfJmGu8KLgLn-cFuBEQ@mail.gmail.com>
Message-ID: <CAJqi3E+kKumx7P97cu5bZb2Xav=E2cMiUz-UM-ufSDnW67PeYQ@mail.gmail.com>

Hi,
I've used this filter with 3D MRI images with more resolution that
daoud23's, and my results were correct. I used 3D Slicer to visualize the
3D images and the result were interesting.
I hope this helps.
Regards.

2015-11-11 13:45 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:

> Hello,
>
> From the screenshot, it is unclear whether the thinning worked or not
> -- it would be better to visualize in 3D instead of 2D planes.
>
> HTH,
> Matt
>
> On Wed, Nov 11, 2015 at 3:33 AM, Daoued23 <mlt.khawla at gmail.com> wrote:
> > Hello everyone,
> >
> > I want to get an Hybrid Skeleton. So I started by testing itk's filter
> > "itk::BinaryThinningImageFilter3D" to obtain the curve skeleton, but it
> > doesn't seem to work. Here is my code.
> >
> > #include "itkImage.h"
> > #include "itkImageFileReader.h"
> > #include "itkImageFileWriter.h"
> >
> > #include "itkConnectedThresholdImageFilter.h"
> > #include "itkImageRegionIterator.h"
> > #include "itkBinaryThinningImageFilter3D.h"
> >
> > #include <iostream>
> > #include <stdlib.h>
> > using namespace std;
> >
> > int main(int argc, char* argv[])
> > {
> >   // Verify the number of parameters in the command line
> >   if( argc <= 2 )
> >   {
> >     std::cerr << "Usage: " << std::endl;
> >     std::cerr << argv[0] << " inputImageFile outputImageFile" <<
> std::endl;
> >     return EXIT_FAILURE;
> >   }
> >   char* infilename  = argv[1];
> >   char* outfilename = argv[2];
> >
> >   const   unsigned int Dimension = 3;
> >   typedef signed short PixelType;
> >   typedef itk::Image< PixelType, Dimension > ImageType;
> >
> >   // Read image
> >   typedef itk::ImageFileReader< ImageType > ReaderType;
> >   ReaderType::Pointer reader = ReaderType::New();
> >   reader->SetFileName( infilename );
> >   try
> >   {
> >     reader->Update();
> >   }
> >   catch (itk::ExceptionObject &ex)
> >   {
> >     std::cout << ex << std::endl;
> >     return EXIT_FAILURE;
> >   }
> >   cout << infilename << " sucessfully read." << endl;
> >
> >   // Define the thinning filter
> >   typedef itk::BinaryThinningImageFilter3D< ImageType, ImageType >
> > ThinningFilterType;
> >   ThinningFilterType::Pointer thinningFilter = ThinningFilterType::New();
> >   thinningFilter->SetInput( reader->GetOutput() );
> >   thinningFilter->Update();
> >
> >   // output to file
> >   typedef itk::ImageFileWriter< ImageType > WriterType;
> >   WriterType::Pointer writer = WriterType::New();
> >   writer->SetInput( thinningFilter->GetOutput() );
> >   writer->SetFileName( outfilename );
> >
> >   try
> >   {
> >     writer->Update();
> >   }
> >   catch (itk::ExceptionObject &ex)
> >   {
> >     std::cout << ex << std::endl;
> >     return EXIT_FAILURE;
> >   }
> >   cout << outfilename << " sucessfully written." << endl;
> >
> >   cout << "Program terminated normally." << endl;
> >   return EXIT_SUCCESS;
> > }
> >
> >
> > And here is the volume I get in return, the initial volume is a region of
> > trabecular bone of size 30x30x30 voxels.
> > <http://itk-users.7.n7.nabble.com/file/n36449/thinningitk.png>
> >
> >
> >
> > --
> > View this message in context:
> http://itk-users.7.n7.nabble.com/itk-BinaryThinningImageFilter3D-tp36449.html
> > Sent from the ITK - Users mailing list archive at Nabble.com.
> > _____________________________________
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Kitware offers ITK Training Courses, for more information visit:
> > http://www.kitware.com/products/protraining.php
> >
> > Please keep messages on-topic and check the ITK FAQ at:
> > http://www.itk.org/Wiki/ITK_FAQ
> >
> > Follow this link to subscribe/unsubscribe:
> > http://public.kitware.com/mailman/listinfo/insight-users
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
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From matimontg at gmail.com  Wed Nov 11 14:51:58 2015
From: matimontg at gmail.com (Matias Montroull)
Date: Wed, 11 Nov 2015 19:51:58 +0000
Subject: [ITK] [ITK-users] Pointset registration
In-Reply-To: <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
 <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
Message-ID: <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>

Hi D?enan, thanks for the suggestion, I tried that example and I think I'm
missign something as my disk drive became crazy.
I basically created 2 txt files with a set of 4 points each in this format:
-0.585938;92.406328;38.200
44.7654;52.73442;61.000
-53.5;49.218792;68.200
-1.757814;81.445382;70.600

second file has the same format but different numbers of course.

Is there anything wrong with how I entered the point sets in both files?

As you can see it is 3 points per line separated by this character ";"

Thanks,

Matias.


El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., D?enan Zuki? <
dzenanz at gmail.com> escribi?:

> Have you seen these two examples:
>
> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
>
> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
>
> HTH
>
> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull <matimontg at gmail.com>
> wrote:
>
>> Hi,
>>
>> I have 2 sets of points (one is points on an image and another one is
>> points on a NDI tracker) and I need to obtain the transformation matrix.
>> What would be the best method? I'm currently using a Solver but I'd like to
>> implement this using ITK and better if it is SimpleITK.
>>
>> Thank you!
>>
>> Matias.
>> --
>> Matias
>>
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-users
>>
>>
> --
Matias
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From dzenanz at gmail.com  Wed Nov 11 14:59:47 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 11 Nov 2015 14:59:47 -0500
Subject: [ITK] [ITK-users] Pointset registration
In-Reply-To: <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
 <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
 <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>
Message-ID: <CAPf2UMQEx0O=Wk2FU0SvZzThHQDC0L-E5O1kng6Kf+G1+JVfKw@mail.gmail.com>

By looking at the code, the numbers should be separated by space, not
semicolon. Can you try that?

HTH

On Wed, Nov 11, 2015 at 2:51 PM, Matias Montroull <matimontg at gmail.com>
wrote:

> Hi D?enan, thanks for the suggestion, I tried that example and I think
> I'm missign something as my disk drive became crazy.
> I basically created 2 txt files with a set of 4 points each in this format:
> -0.585938;92.406328;38.200
> 44.7654;52.73442;61.000
> -53.5;49.218792;68.200
> -1.757814;81.445382;70.600
>
> second file has the same format but different numbers of course.
>
> Is there anything wrong with how I entered the point sets in both files?
>
> As you can see it is 3 points per line separated by this character ";"
>
> Thanks,
>
> Matias.
>
>
> El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., D?enan Zuki? <
> dzenanz at gmail.com> escribi?:
>
>> Have you seen these two examples:
>>
>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
>>
>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
>>
>> HTH
>>
>> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull <matimontg at gmail.com>
>> wrote:
>>
>>> Hi,
>>>
>>> I have 2 sets of points (one is points on an image and another one is
>>> points on a NDI tracker) and I need to obtain the transformation matrix.
>>> What would be the best method? I'm currently using a Solver but I'd like to
>>> implement this using ITK and better if it is SimpleITK.
>>>
>>> Thank you!
>>>
>>> Matias.
>>> --
>>> Matias
>>>
>>> _____________________________________
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://www.kitware.com/products/protraining.php
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>
>>>
>> --
> Matias
>
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From matimontg at gmail.com  Wed Nov 11 15:02:43 2015
From: matimontg at gmail.com (Matias Montroull)
Date: Wed, 11 Nov 2015 20:02:43 +0000
Subject: [ITK] [ITK-users] Pointset registration
In-Reply-To: <CAPf2UMQEx0O=Wk2FU0SvZzThHQDC0L-E5O1kng6Kf+G1+JVfKw@mail.gmail.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
 <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
 <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>
 <CAPf2UMQEx0O=Wk2FU0SvZzThHQDC0L-E5O1kng6Kf+G1+JVfKw@mail.gmail.com>
Message-ID: <CAKKNfuL7Qp+3PEpXYp1G9Bqzp==WXTJG+Dzw5z0yTHYbFyeOgQ@mail.gmail.com>

that worked! Thanks for the advise, I was under the impression that points
needed to be separated by ";"
Thanks again

El mi?., 11 de nov. de 2015 a la(s) 5:00 p. m., D?enan Zuki? <
dzenanz at gmail.com> escribi?:

> By looking at the code, the numbers should be separated by space, not
> semicolon. Can you try that?
>
> HTH
>
> On Wed, Nov 11, 2015 at 2:51 PM, Matias Montroull <matimontg at gmail.com>
> wrote:
>
>> Hi D?enan, thanks for the suggestion, I tried that example and I think
>> I'm missign something as my disk drive became crazy.
>> I basically created 2 txt files with a set of 4 points each in this
>> format:
>> -0.585938;92.406328;38.200
>> 44.7654;52.73442;61.000
>> -53.5;49.218792;68.200
>> -1.757814;81.445382;70.600
>>
>> second file has the same format but different numbers of course.
>>
>> Is there anything wrong with how I entered the point sets in both files?
>>
>> As you can see it is 3 points per line separated by this character ";"
>>
>> Thanks,
>>
>> Matias.
>>
>>
>> El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., D?enan Zuki? <
>> dzenanz at gmail.com> escribi?:
>>
>>> Have you seen these two examples:
>>>
>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
>>>
>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
>>>
>>> HTH
>>>
>>> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull <matimontg at gmail.com>
>>> wrote:
>>>
>>>> Hi,
>>>>
>>>> I have 2 sets of points (one is points on an image and another one is
>>>> points on a NDI tracker) and I need to obtain the transformation matrix.
>>>> What would be the best method? I'm currently using a Solver but I'd like to
>>>> implement this using ITK and better if it is SimpleITK.
>>>>
>>>> Thank you!
>>>>
>>>> Matias.
>>>> --
>>>> Matias
>>>>
>>>> _____________________________________
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>> http://www.kitware.com/products/protraining.php
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>>
>>>>
>>> --
>> Matias
>>
>
> --
Matias
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From matimontg at gmail.com  Wed Nov 11 15:03:59 2015
From: matimontg at gmail.com (Matias Montroull)
Date: Wed, 11 Nov 2015 20:03:59 +0000
Subject: [ITK] [ITK-users] Pointset registration
In-Reply-To: <CAKKNfuL7Qp+3PEpXYp1G9Bqzp==WXTJG+Dzw5z0yTHYbFyeOgQ@mail.gmail.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
 <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
 <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>
 <CAPf2UMQEx0O=Wk2FU0SvZzThHQDC0L-E5O1kng6Kf+G1+JVfKw@mail.gmail.com>
 <CAKKNfuL7Qp+3PEpXYp1G9Bqzp==WXTJG+Dzw5z0yTHYbFyeOgQ@mail.gmail.com>
Message-ID: <CAKKNfuKUH1vXq0UGSQ0a1sYWeQx=hcZnELvbvBeMpoDp2gCb-w@mail.gmail.com>

by the way, where in the code is the space separator specified?

El mi?., 11 de nov. de 2015 a la(s) 5:02 p. m., Matias Montroull <
matimontg at gmail.com> escribi?:

> that worked! Thanks for the advise, I was under the impression that points
> needed to be separated by ";"
> Thanks again
>
> El mi?., 11 de nov. de 2015 a la(s) 5:00 p. m., D?enan Zuki? <
> dzenanz at gmail.com> escribi?:
>
>> By looking at the code, the numbers should be separated by space, not
>> semicolon. Can you try that?
>>
>> HTH
>>
>> On Wed, Nov 11, 2015 at 2:51 PM, Matias Montroull <matimontg at gmail.com>
>> wrote:
>>
>>> Hi D?enan, thanks for the suggestion, I tried that example and I think
>>> I'm missign something as my disk drive became crazy.
>>> I basically created 2 txt files with a set of 4 points each in this
>>> format:
>>> -0.585938;92.406328;38.200
>>> 44.7654;52.73442;61.000
>>> -53.5;49.218792;68.200
>>> -1.757814;81.445382;70.600
>>>
>>> second file has the same format but different numbers of course.
>>>
>>> Is there anything wrong with how I entered the point sets in both files?
>>>
>>> As you can see it is 3 points per line separated by this character ";"
>>>
>>> Thanks,
>>>
>>> Matias.
>>>
>>>
>>> El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., D?enan Zuki? <
>>> dzenanz at gmail.com> escribi?:
>>>
>>>> Have you seen these two examples:
>>>>
>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
>>>>
>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
>>>>
>>>> HTH
>>>>
>>>> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull <matimontg at gmail.com>
>>>> wrote:
>>>>
>>>>> Hi,
>>>>>
>>>>> I have 2 sets of points (one is points on an image and another one is
>>>>> points on a NDI tracker) and I need to obtain the transformation matrix.
>>>>> What would be the best method? I'm currently using a Solver but I'd like to
>>>>> implement this using ITK and better if it is SimpleITK.
>>>>>
>>>>> Thank you!
>>>>>
>>>>> Matias.
>>>>> --
>>>>> Matias
>>>>>
>>>>> _____________________________________
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>> http://www.kitware.com/products/protraining.php
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>
>>>>>
>>>> --
>>> Matias
>>>
>>
>> --
> Matias
>
-- 
Matias
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Powered by www.kitware.com

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Kitware offers ITK Training Courses, for more information visit:
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From dzenanz at gmail.com  Wed Nov 11 15:51:33 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 11 Nov 2015 15:51:33 -0500
Subject: [ITK] [ITK-users] Pointset registration
In-Reply-To: <CAKKNfuKUH1vXq0UGSQ0a1sYWeQx=hcZnELvbvBeMpoDp2gCb-w@mail.gmail.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
 <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
 <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>
 <CAPf2UMQEx0O=Wk2FU0SvZzThHQDC0L-E5O1kng6Kf+G1+JVfKw@mail.gmail.com>
 <CAKKNfuL7Qp+3PEpXYp1G9Bqzp==WXTJG+Dzw5z0yTHYbFyeOgQ@mail.gmail.com>
 <CAKKNfuKUH1vXq0UGSQ0a1sYWeQx=hcZnELvbvBeMpoDp2gCb-w@mail.gmail.com>
Message-ID: <CAPf2UMQT8Ni8rOUD8JpsyN6c5B0p58trT_GfHD2kjBHcohb5Gg@mail.gmail.com>

Nowhere, which means it's the >> operator's standard white-space separators
(spaces, tabs, newlines).

On Wed, Nov 11, 2015 at 3:03 PM, Matias Montroull <matimontg at gmail.com>
wrote:

> by the way, where in the code is the space separator specified?
>
> El mi?., 11 de nov. de 2015 a la(s) 5:02 p. m., Matias Montroull <
> matimontg at gmail.com> escribi?:
>
>> that worked! Thanks for the advise, I was under the impression that
>> points needed to be separated by ";"
>> Thanks again
>>
>> El mi?., 11 de nov. de 2015 a la(s) 5:00 p. m., D?enan Zuki? <
>> dzenanz at gmail.com> escribi?:
>>
>>> By looking at the code, the numbers should be separated by space, not
>>> semicolon. Can you try that?
>>>
>>> HTH
>>>
>>> On Wed, Nov 11, 2015 at 2:51 PM, Matias Montroull <matimontg at gmail.com>
>>> wrote:
>>>
>>>> Hi D?enan, thanks for the suggestion, I tried that example and I think
>>>> I'm missign something as my disk drive became crazy.
>>>> I basically created 2 txt files with a set of 4 points each in this
>>>> format:
>>>> -0.585938;92.406328;38.200
>>>> 44.7654;52.73442;61.000
>>>> -53.5;49.218792;68.200
>>>> -1.757814;81.445382;70.600
>>>>
>>>> second file has the same format but different numbers of course.
>>>>
>>>> Is there anything wrong with how I entered the point sets in both files?
>>>>
>>>> As you can see it is 3 points per line separated by this character ";"
>>>>
>>>> Thanks,
>>>>
>>>> Matias.
>>>>
>>>>
>>>> El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., D?enan Zuki? <
>>>> dzenanz at gmail.com> escribi?:
>>>>
>>>>> Have you seen these two examples:
>>>>>
>>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
>>>>>
>>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
>>>>>
>>>>> HTH
>>>>>
>>>>> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull <matimontg at gmail.com
>>>>> > wrote:
>>>>>
>>>>>> Hi,
>>>>>>
>>>>>> I have 2 sets of points (one is points on an image and another one is
>>>>>> points on a NDI tracker) and I need to obtain the transformation matrix.
>>>>>> What would be the best method? I'm currently using a Solver but I'd like to
>>>>>> implement this using ITK and better if it is SimpleITK.
>>>>>>
>>>>>> Thank you!
>>>>>>
>>>>>> Matias.
>>>>>> --
>>>>>> Matias
>>>>>>
>>>>>> _____________________________________
>>>>>> Powered by www.kitware.com
>>>>>>
>>>>>> Visit other Kitware open-source projects at
>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>
>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>> http://www.kitware.com/products/protraining.php
>>>>>>
>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>
>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>
>>>>>>
>>>>> --
>>>> Matias
>>>>
>>>
>>> --
>> Matias
>>
> --
> Matias
>
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Kitware offers ITK Training Courses, for more information visit:
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From matimontg at gmail.com  Wed Nov 11 16:38:20 2015
From: matimontg at gmail.com (Matias Montroull)
Date: Wed, 11 Nov 2015 21:38:20 +0000
Subject: [ITK] [ITK-users] Pointset registration
In-Reply-To: <CAPf2UMQT8Ni8rOUD8JpsyN6c5B0p58trT_GfHD2kjBHcohb5Gg@mail.gmail.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
 <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
 <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>
 <CAPf2UMQEx0O=Wk2FU0SvZzThHQDC0L-E5O1kng6Kf+G1+JVfKw@mail.gmail.com>
 <CAKKNfuL7Qp+3PEpXYp1G9Bqzp==WXTJG+Dzw5z0yTHYbFyeOgQ@mail.gmail.com>
 <CAKKNfuKUH1vXq0UGSQ0a1sYWeQx=hcZnELvbvBeMpoDp2gCb-w@mail.gmail.com>
 <CAPf2UMQT8Ni8rOUD8JpsyN6c5B0p58trT_GfHD2kjBHcohb5Gg@mail.gmail.com>
Message-ID: <CAKKNfu+EsosxWk7OOH_MZ1rM9XgoK0ntXnjZgmDV2KDJYQf+cA@mail.gmail.com>

Thanks.

Here's another question, it seems I need 12 points to perform the
registration and obtain the matrix, now, the results I'm getting are not
very good. We have the algorithm programmed manually (not using ITK) and
when we compare the results are different (way too different).
I just pulled the example and modified to 3 dimensions and changed the
translationtransform to an affine transform. Is there an example using
Affine that I can check? I'm thinking is not just changing the transform,
there may be other variables I need to tweak..
Matias.

El mi?., 11 de nov. de 2015 a la(s) 5:51 p. m., D?enan Zuki? <
dzenanz at gmail.com> escribi?:

> Nowhere, which means it's the >> operator's standard white-space
> separators (spaces, tabs, newlines).
>
> On Wed, Nov 11, 2015 at 3:03 PM, Matias Montroull <matimontg at gmail.com>
> wrote:
>
>> by the way, where in the code is the space separator specified?
>>
>> El mi?., 11 de nov. de 2015 a la(s) 5:02 p. m., Matias Montroull <
>> matimontg at gmail.com> escribi?:
>>
>>> that worked! Thanks for the advise, I was under the impression that
>>> points needed to be separated by ";"
>>> Thanks again
>>>
>>> El mi?., 11 de nov. de 2015 a la(s) 5:00 p. m., D?enan Zuki? <
>>> dzenanz at gmail.com> escribi?:
>>>
>>>> By looking at the code, the numbers should be separated by space, not
>>>> semicolon. Can you try that?
>>>>
>>>> HTH
>>>>
>>>> On Wed, Nov 11, 2015 at 2:51 PM, Matias Montroull <matimontg at gmail.com>
>>>> wrote:
>>>>
>>>>> Hi D?enan, thanks for the suggestion, I tried that example and I
>>>>> think I'm missign something as my disk drive became crazy.
>>>>> I basically created 2 txt files with a set of 4 points each in this
>>>>> format:
>>>>> -0.585938;92.406328;38.200
>>>>> 44.7654;52.73442;61.000
>>>>> -53.5;49.218792;68.200
>>>>> -1.757814;81.445382;70.600
>>>>>
>>>>> second file has the same format but different numbers of course.
>>>>>
>>>>> Is there anything wrong with how I entered the point sets in both
>>>>> files?
>>>>>
>>>>> As you can see it is 3 points per line separated by this character ";"
>>>>>
>>>>> Thanks,
>>>>>
>>>>> Matias.
>>>>>
>>>>>
>>>>> El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., D?enan Zuki? <
>>>>> dzenanz at gmail.com> escribi?:
>>>>>
>>>>>> Have you seen these two examples:
>>>>>>
>>>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
>>>>>>
>>>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
>>>>>>
>>>>>> HTH
>>>>>>
>>>>>> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull <
>>>>>> matimontg at gmail.com> wrote:
>>>>>>
>>>>>>> Hi,
>>>>>>>
>>>>>>> I have 2 sets of points (one is points on an image and another one
>>>>>>> is points on a NDI tracker) and I need to obtain the transformation matrix.
>>>>>>> What would be the best method? I'm currently using a Solver but I'd like to
>>>>>>> implement this using ITK and better if it is SimpleITK.
>>>>>>>
>>>>>>> Thank you!
>>>>>>>
>>>>>>> Matias.
>>>>>>> --
>>>>>>> Matias
>>>>>>>
>>>>>>> _____________________________________
>>>>>>> Powered by www.kitware.com
>>>>>>>
>>>>>>> Visit other Kitware open-source projects at
>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>
>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>> http://www.kitware.com/products/protraining.php
>>>>>>>
>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>
>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>
>>>>>>>
>>>>>> --
>>>>> Matias
>>>>>
>>>>
>>>> --
>>> Matias
>>>
>> --
>> Matias
>>
>
> --
Matias
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_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
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Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
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From matt.mccormick at kitware.com  Wed Nov 11 16:43:11 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 11 Nov 2015 16:43:11 -0500
Subject: [ITK] [ITK-users] Pointset registration
In-Reply-To: <CAKKNfu+EsosxWk7OOH_MZ1rM9XgoK0ntXnjZgmDV2KDJYQf+cA@mail.gmail.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
 <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
 <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>
 <CAPf2UMQEx0O=Wk2FU0SvZzThHQDC0L-E5O1kng6Kf+G1+JVfKw@mail.gmail.com>
 <CAKKNfuL7Qp+3PEpXYp1G9Bqzp==WXTJG+Dzw5z0yTHYbFyeOgQ@mail.gmail.com>
 <CAKKNfuKUH1vXq0UGSQ0a1sYWeQx=hcZnELvbvBeMpoDp2gCb-w@mail.gmail.com>
 <CAPf2UMQT8Ni8rOUD8JpsyN6c5B0p58trT_GfHD2kjBHcohb5Gg@mail.gmail.com>
 <CAKKNfu+EsosxWk7OOH_MZ1rM9XgoK0ntXnjZgmDV2KDJYQf+cA@mail.gmail.com>
Message-ID: <CALzTN-Te0orET64uAAg9nfx8Nv4doyimQVowSbE31S89E+5WuA@mail.gmail.com>

Hi Matias,

Can the datasets be shared?

Thanks,
Matt

On Wed, Nov 11, 2015 at 4:38 PM, Matias Montroull <matimontg at gmail.com> wrote:
> Thanks.
>
> Here's another question, it seems I need 12 points to perform the
> registration and obtain the matrix, now, the results I'm getting are not
> very good. We have the algorithm programmed manually (not using ITK) and
> when we compare the results are different (way too different).
> I just pulled the example and modified to 3 dimensions and changed the
> translationtransform to an affine transform. Is there an example using
> Affine that I can check? I'm thinking is not just changing the transform,
> there may be other variables I need to tweak..
> Matias.
>
> El mi?., 11 de nov. de 2015 a la(s) 5:51 p. m., D?enan Zuki?
> <dzenanz at gmail.com> escribi?:
>>
>> Nowhere, which means it's the >> operator's standard white-space
>> separators (spaces, tabs, newlines).
>>
>> On Wed, Nov 11, 2015 at 3:03 PM, Matias Montroull <matimontg at gmail.com>
>> wrote:
>>>
>>> by the way, where in the code is the space separator specified?
>>>
>>> El mi?., 11 de nov. de 2015 a la(s) 5:02 p. m., Matias Montroull
>>> <matimontg at gmail.com> escribi?:
>>>>
>>>> that worked! Thanks for the advise, I was under the impression that
>>>> points needed to be separated by ";"
>>>> Thanks again
>>>>
>>>> El mi?., 11 de nov. de 2015 a la(s) 5:00 p. m., D?enan Zuki?
>>>> <dzenanz at gmail.com> escribi?:
>>>>>
>>>>> By looking at the code, the numbers should be separated by space, not
>>>>> semicolon. Can you try that?
>>>>>
>>>>> HTH
>>>>>
>>>>> On Wed, Nov 11, 2015 at 2:51 PM, Matias Montroull <matimontg at gmail.com>
>>>>> wrote:
>>>>>>
>>>>>> Hi D?enan, thanks for the suggestion, I tried that example and I think
>>>>>> I'm missign something as my disk drive became crazy.
>>>>>> I basically created 2 txt files with a set of 4 points each in this
>>>>>> format:
>>>>>> -0.585938;92.406328;38.200
>>>>>> 44.7654;52.73442;61.000
>>>>>> -53.5;49.218792;68.200
>>>>>> -1.757814;81.445382;70.600
>>>>>>
>>>>>> second file has the same format but different numbers of course.
>>>>>>
>>>>>> Is there anything wrong with how I entered the point sets in both
>>>>>> files?
>>>>>>
>>>>>> As you can see it is 3 points per line separated by this character ";"
>>>>>>
>>>>>> Thanks,
>>>>>>
>>>>>> Matias.
>>>>>>
>>>>>>
>>>>>> El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., D?enan Zuki?
>>>>>> <dzenanz at gmail.com> escribi?:
>>>>>>>
>>>>>>> Have you seen these two examples:
>>>>>>>
>>>>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
>>>>>>>
>>>>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
>>>>>>>
>>>>>>> HTH
>>>>>>>
>>>>>>> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull
>>>>>>> <matimontg at gmail.com> wrote:
>>>>>>>>
>>>>>>>> Hi,
>>>>>>>>
>>>>>>>> I have 2 sets of points (one is points on an image and another one
>>>>>>>> is points on a NDI tracker) and I need to obtain the transformation matrix.
>>>>>>>> What would be the best method? I'm currently using a Solver but I'd like to
>>>>>>>> implement this using ITK and better if it is SimpleITK.
>>>>>>>>
>>>>>>>> Thank you!
>>>>>>>>
>>>>>>>> Matias.
>>>>>>>> --
>>>>>>>> Matias
>>>>>>>>
>>>>>>>> _____________________________________
>>>>>>>> Powered by www.kitware.com
>>>>>>>>
>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>
>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>> http://www.kitware.com/products/protraining.php
>>>>>>>>
>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>
>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>>
>>>>>>>
>>>>>> --
>>>>>> Matias
>>>>>
>>>>>
>>>> --
>>>> Matias
>>>
>>> --
>>> Matias
>>
>>
> --
> Matias
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From matimontg at gmail.com  Wed Nov 11 16:57:50 2015
From: matimontg at gmail.com (Matias Montroull)
Date: Wed, 11 Nov 2015 21:57:50 +0000
Subject: [ITK] [ITK-users] Pointset registration
In-Reply-To: <CALzTN-Te0orET64uAAg9nfx8Nv4doyimQVowSbE31S89E+5WuA@mail.gmail.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
 <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
 <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>
 <CAPf2UMQEx0O=Wk2FU0SvZzThHQDC0L-E5O1kng6Kf+G1+JVfKw@mail.gmail.com>
 <CAKKNfuL7Qp+3PEpXYp1G9Bqzp==WXTJG+Dzw5z0yTHYbFyeOgQ@mail.gmail.com>
 <CAKKNfuKUH1vXq0UGSQ0a1sYWeQx=hcZnELvbvBeMpoDp2gCb-w@mail.gmail.com>
 <CAPf2UMQT8Ni8rOUD8JpsyN6c5B0p58trT_GfHD2kjBHcohb5Gg@mail.gmail.com>
 <CAKKNfu+EsosxWk7OOH_MZ1rM9XgoK0ntXnjZgmDV2KDJYQf+cA@mail.gmail.com>
 <CALzTN-Te0orET64uAAg9nfx8Nv4doyimQVowSbE31S89E+5WuA@mail.gmail.com>
Message-ID: <CAKKNfuKpVkNxqezooafd96sZvAwz8pkebGNJ=WJ3N5Q6igTfEg@mail.gmail.com>

Yes, here it goes..

you will notice there are points that I had to repeat, the original dataset
was 4 points on each file and I was getting warnings: * Number of
unknowns(12) greater than number of data (4)*

"puntosfijos.txt" is the fixed pointsets
"puntosflotantes.txt" is the moving pointset..

Thanks for your help.

Matias.

El mi?., 11 de nov. de 2015 a la(s) 6:43 p. m., Matt McCormick <
matt.mccormick at kitware.com> escribi?:

> Hi Matias,
>
> Can the datasets be shared?
>
> Thanks,
> Matt
>
> On Wed, Nov 11, 2015 at 4:38 PM, Matias Montroull <matimontg at gmail.com>
> wrote:
> > Thanks.
> >
> > Here's another question, it seems I need 12 points to perform the
> > registration and obtain the matrix, now, the results I'm getting are not
> > very good. We have the algorithm programmed manually (not using ITK) and
> > when we compare the results are different (way too different).
> > I just pulled the example and modified to 3 dimensions and changed the
> > translationtransform to an affine transform. Is there an example using
> > Affine that I can check? I'm thinking is not just changing the transform,
> > there may be other variables I need to tweak..
> > Matias.
> >
> > El mi?., 11 de nov. de 2015 a la(s) 5:51 p. m., D?enan Zuki?
> > <dzenanz at gmail.com> escribi?:
> >>
> >> Nowhere, which means it's the >> operator's standard white-space
> >> separators (spaces, tabs, newlines).
> >>
> >> On Wed, Nov 11, 2015 at 3:03 PM, Matias Montroull <matimontg at gmail.com>
> >> wrote:
> >>>
> >>> by the way, where in the code is the space separator specified?
> >>>
> >>> El mi?., 11 de nov. de 2015 a la(s) 5:02 p. m., Matias Montroull
> >>> <matimontg at gmail.com> escribi?:
> >>>>
> >>>> that worked! Thanks for the advise, I was under the impression that
> >>>> points needed to be separated by ";"
> >>>> Thanks again
> >>>>
> >>>> El mi?., 11 de nov. de 2015 a la(s) 5:00 p. m., D?enan Zuki?
> >>>> <dzenanz at gmail.com> escribi?:
> >>>>>
> >>>>> By looking at the code, the numbers should be separated by space, not
> >>>>> semicolon. Can you try that?
> >>>>>
> >>>>> HTH
> >>>>>
> >>>>> On Wed, Nov 11, 2015 at 2:51 PM, Matias Montroull <
> matimontg at gmail.com>
> >>>>> wrote:
> >>>>>>
> >>>>>> Hi D?enan, thanks for the suggestion, I tried that example and I
> think
> >>>>>> I'm missign something as my disk drive became crazy.
> >>>>>> I basically created 2 txt files with a set of 4 points each in this
> >>>>>> format:
> >>>>>> -0.585938;92.406328;38.200
> >>>>>> 44.7654;52.73442;61.000
> >>>>>> -53.5;49.218792;68.200
> >>>>>> -1.757814;81.445382;70.600
> >>>>>>
> >>>>>> second file has the same format but different numbers of course.
> >>>>>>
> >>>>>> Is there anything wrong with how I entered the point sets in both
> >>>>>> files?
> >>>>>>
> >>>>>> As you can see it is 3 points per line separated by this character
> ";"
> >>>>>>
> >>>>>> Thanks,
> >>>>>>
> >>>>>> Matias.
> >>>>>>
> >>>>>>
> >>>>>> El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., D?enan Zuki?
> >>>>>> <dzenanz at gmail.com> escribi?:
> >>>>>>>
> >>>>>>> Have you seen these two examples:
> >>>>>>>
> >>>>>>>
> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
> >>>>>>>
> >>>>>>>
> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
> >>>>>>>
> >>>>>>> HTH
> >>>>>>>
> >>>>>>> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull
> >>>>>>> <matimontg at gmail.com> wrote:
> >>>>>>>>
> >>>>>>>> Hi,
> >>>>>>>>
> >>>>>>>> I have 2 sets of points (one is points on an image and another one
> >>>>>>>> is points on a NDI tracker) and I need to obtain the
> transformation matrix.
> >>>>>>>> What would be the best method? I'm currently using a Solver but
> I'd like to
> >>>>>>>> implement this using ITK and better if it is SimpleITK.
> >>>>>>>>
> >>>>>>>> Thank you!
> >>>>>>>>
> >>>>>>>> Matias.
> >>>>>>>> --
> >>>>>>>> Matias
> >>>>>>>>
> >>>>>>>> _____________________________________
> >>>>>>>> Powered by www.kitware.com
> >>>>>>>>
> >>>>>>>> Visit other Kitware open-source projects at
> >>>>>>>> http://www.kitware.com/opensource/opensource.html
> >>>>>>>>
> >>>>>>>> Kitware offers ITK Training Courses, for more information visit:
> >>>>>>>> http://www.kitware.com/products/protraining.php
> >>>>>>>>
> >>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
> >>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
> >>>>>>>>
> >>>>>>>> Follow this link to subscribe/unsubscribe:
> >>>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
> >>>>>>>>
> >>>>>>>
> >>>>>> --
> >>>>>> Matias
> >>>>>
> >>>>>
> >>>> --
> >>>> Matias
> >>>
> >>> --
> >>> Matias
> >>
> >>
> > --
> > Matias
> >
> > _____________________________________
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Kitware offers ITK Training Courses, for more information visit:
> > http://www.kitware.com/products/protraining.php
> >
> > Please keep messages on-topic and check the ITK FAQ at:
> > http://www.itk.org/Wiki/ITK_FAQ
> >
> > Follow this link to subscribe/unsubscribe:
> > http://public.kitware.com/mailman/listinfo/insight-users
> >
>
-- 
Matias
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98.76754713842602 -256.97936380336666 101.46049315138942
105.01858859113306 -252.46016294961202 71.16100389714318
82.61727929896919 -202.51250681287785 49.81482122398683
73.36814616883537 -306.35996767973201 54.41328717734619
98.76754713842602 -256.97936380336666 101.46049315138942
105.01858859113306 -252.46016294961202 71.16100389714318
82.61727929896919 -202.51250681287785 49.81482122398683
73.36814616883537 -306.35996767973201 54.41328717734619
98.76754713842602 -256.97936380336666 101.46049315138942
105.01858859113306 -252.46016294961202 71.16100389714318
82.61727929896919 -202.51250681287785 49.81482122398683
73.36814616883537 -306.35996767973201 54.41328717734619
-------------- next part --------------
-0.585938 92.406328 38.200
44.7654 52.73442 61.000
-53.5 49.218792 68.200
-1.757814 81.445382 70.600
-0.585938 92.406328 38.200
44.7654 52.73442 61.000
-53.5 49.218792 68.200
-1.757814 81.445382 70.600
-0.585938 92.406328 38.200
44.7654 52.73442 61.000
-53.5 49.218792 68.200
-1.757814 81.445382 70.600
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From dzenanz at gmail.com  Wed Nov 11 17:02:56 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 11 Nov 2015 17:02:56 -0500
Subject: [ITK] [ITK-users] Pointset registration
In-Reply-To: <CAKKNfuKpVkNxqezooafd96sZvAwz8pkebGNJ=WJ3N5Q6igTfEg@mail.gmail.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
 <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
 <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>
 <CAPf2UMQEx0O=Wk2FU0SvZzThHQDC0L-E5O1kng6Kf+G1+JVfKw@mail.gmail.com>
 <CAKKNfuL7Qp+3PEpXYp1G9Bqzp==WXTJG+Dzw5z0yTHYbFyeOgQ@mail.gmail.com>
 <CAKKNfuKUH1vXq0UGSQ0a1sYWeQx=hcZnELvbvBeMpoDp2gCb-w@mail.gmail.com>
 <CAPf2UMQT8Ni8rOUD8JpsyN6c5B0p58trT_GfHD2kjBHcohb5Gg@mail.gmail.com>
 <CAKKNfu+EsosxWk7OOH_MZ1rM9XgoK0ntXnjZgmDV2KDJYQf+cA@mail.gmail.com>
 <CALzTN-Te0orET64uAAg9nfx8Nv4doyimQVowSbE31S89E+5WuA@mail.gmail.com>
 <CAKKNfuKpVkNxqezooafd96sZvAwz8pkebGNJ=WJ3N5Q6igTfEg@mail.gmail.com>
Message-ID: <CAPf2UMRjEyF2JzHwF_XR+WsrTSmXtKx8TzFVKwUkuoVO+jpg+A@mail.gmail.com>

One possible reason for lousy result are duplicate points. Can you replace
all this duplication with one more good point (so you have 5)?

On Wed, Nov 11, 2015 at 4:57 PM, Matias Montroull <matimontg at gmail.com>
wrote:

> Yes, here it goes..
>
> you will notice there are points that I had to repeat, the original
> dataset was 4 points on each file and I was getting warnings: * Number of
> unknowns(12) greater than number of data (4)*
>
> "puntosfijos.txt" is the fixed pointsets
> "puntosflotantes.txt" is the moving pointset..
>
> Thanks for your help.
>
> Matias.
>
> El mi?., 11 de nov. de 2015 a la(s) 6:43 p. m., Matt McCormick <
> matt.mccormick at kitware.com> escribi?:
>
>> Hi Matias,
>>
>> Can the datasets be shared?
>>
>> Thanks,
>> Matt
>>
>> On Wed, Nov 11, 2015 at 4:38 PM, Matias Montroull <matimontg at gmail.com>
>> wrote:
>> > Thanks.
>> >
>> > Here's another question, it seems I need 12 points to perform the
>> > registration and obtain the matrix, now, the results I'm getting are not
>> > very good. We have the algorithm programmed manually (not using ITK) and
>> > when we compare the results are different (way too different).
>> > I just pulled the example and modified to 3 dimensions and changed the
>> > translationtransform to an affine transform. Is there an example using
>> > Affine that I can check? I'm thinking is not just changing the
>> transform,
>> > there may be other variables I need to tweak..
>> > Matias.
>> >
>> > El mi?., 11 de nov. de 2015 a la(s) 5:51 p. m., D?enan Zuki?
>> > <dzenanz at gmail.com> escribi?:
>> >>
>> >> Nowhere, which means it's the >> operator's standard white-space
>> >> separators (spaces, tabs, newlines).
>> >>
>> >> On Wed, Nov 11, 2015 at 3:03 PM, Matias Montroull <matimontg at gmail.com
>> >
>> >> wrote:
>> >>>
>> >>> by the way, where in the code is the space separator specified?
>> >>>
>> >>> El mi?., 11 de nov. de 2015 a la(s) 5:02 p. m., Matias Montroull
>> >>> <matimontg at gmail.com> escribi?:
>> >>>>
>> >>>> that worked! Thanks for the advise, I was under the impression that
>> >>>> points needed to be separated by ";"
>> >>>> Thanks again
>> >>>>
>> >>>> El mi?., 11 de nov. de 2015 a la(s) 5:00 p. m., D?enan Zuki?
>> >>>> <dzenanz at gmail.com> escribi?:
>> >>>>>
>> >>>>> By looking at the code, the numbers should be separated by space,
>> not
>> >>>>> semicolon. Can you try that?
>> >>>>>
>> >>>>> HTH
>> >>>>>
>> >>>>> On Wed, Nov 11, 2015 at 2:51 PM, Matias Montroull <
>> matimontg at gmail.com>
>> >>>>> wrote:
>> >>>>>>
>> >>>>>> Hi D?enan, thanks for the suggestion, I tried that example and I
>> think
>> >>>>>> I'm missign something as my disk drive became crazy.
>> >>>>>> I basically created 2 txt files with a set of 4 points each in this
>> >>>>>> format:
>> >>>>>> -0.585938;92.406328;38.200
>> >>>>>> 44.7654;52.73442;61.000
>> >>>>>> -53.5;49.218792;68.200
>> >>>>>> -1.757814;81.445382;70.600
>> >>>>>>
>> >>>>>> second file has the same format but different numbers of course.
>> >>>>>>
>> >>>>>> Is there anything wrong with how I entered the point sets in both
>> >>>>>> files?
>> >>>>>>
>> >>>>>> As you can see it is 3 points per line separated by this character
>> ";"
>> >>>>>>
>> >>>>>> Thanks,
>> >>>>>>
>> >>>>>> Matias.
>> >>>>>>
>> >>>>>>
>> >>>>>> El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., D?enan Zuki?
>> >>>>>> <dzenanz at gmail.com> escribi?:
>> >>>>>>>
>> >>>>>>> Have you seen these two examples:
>> >>>>>>>
>> >>>>>>>
>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
>> >>>>>>>
>> >>>>>>>
>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
>> >>>>>>>
>> >>>>>>> HTH
>> >>>>>>>
>> >>>>>>> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull
>> >>>>>>> <matimontg at gmail.com> wrote:
>> >>>>>>>>
>> >>>>>>>> Hi,
>> >>>>>>>>
>> >>>>>>>> I have 2 sets of points (one is points on an image and another
>> one
>> >>>>>>>> is points on a NDI tracker) and I need to obtain the
>> transformation matrix.
>> >>>>>>>> What would be the best method? I'm currently using a Solver but
>> I'd like to
>> >>>>>>>> implement this using ITK and better if it is SimpleITK.
>> >>>>>>>>
>> >>>>>>>> Thank you!
>> >>>>>>>>
>> >>>>>>>> Matias.
>> >>>>>>>> --
>> >>>>>>>> Matias
>> >>>>>>>>
>> >>>>>>>> _____________________________________
>> >>>>>>>> Powered by www.kitware.com
>> >>>>>>>>
>> >>>>>>>> Visit other Kitware open-source projects at
>> >>>>>>>> http://www.kitware.com/opensource/opensource.html
>> >>>>>>>>
>> >>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>> >>>>>>>> http://www.kitware.com/products/protraining.php
>> >>>>>>>>
>> >>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>> >>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>> >>>>>>>>
>> >>>>>>>> Follow this link to subscribe/unsubscribe:
>> >>>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>> >>>>>>>>
>> >>>>>>>
>> >>>>>> --
>> >>>>>> Matias
>> >>>>>
>> >>>>>
>> >>>> --
>> >>>> Matias
>> >>>
>> >>> --
>> >>> Matias
>> >>
>> >>
>> > --
>> > Matias
>> >
>> > _____________________________________
>> > Powered by www.kitware.com
>> >
>> > Visit other Kitware open-source projects at
>> > http://www.kitware.com/opensource/opensource.html
>> >
>> > Kitware offers ITK Training Courses, for more information visit:
>> > http://www.kitware.com/products/protraining.php
>> >
>> > Please keep messages on-topic and check the ITK FAQ at:
>> > http://www.itk.org/Wiki/ITK_FAQ
>> >
>> > Follow this link to subscribe/unsubscribe:
>> > http://public.kitware.com/mailman/listinfo/insight-users
>> >
>>
> --
> Matias
>
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From matimontg at gmail.com  Wed Nov 11 17:15:39 2015
From: matimontg at gmail.com (Matias Montroull)
Date: Wed, 11 Nov 2015 22:15:39 +0000
Subject: [ITK] [ITK-users]   Pointset registration
In-Reply-To: <DM2PR07MB3500C847ED01886EB7FBE7BD8130@DM2PR07MB350.namprd07.prod.outlook.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
 <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
 <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>
 <CAPf2UMQEx0O=Wk2FU0SvZzThHQDC0L-E5O1kng6Kf+G1+JVfKw@mail.gmail.com>
 <CAKKNfuL7Qp+3PEpXYp1G9Bqzp==WXTJG+Dzw5z0yTHYbFyeOgQ@mail.gmail.com>
 <CAKKNfuKUH1vXq0UGSQ0a1sYWeQx=hcZnELvbvBeMpoDp2gCb-w@mail.gmail.com>
 <CAPf2UMQT8Ni8rOUD8JpsyN6c5B0p58trT_GfHD2kjBHcohb5Gg@mail.gmail.com>
 <CAKKNfu+EsosxWk7OOH_MZ1rM9XgoK0ntXnjZgmDV2KDJYQf+cA@mail.gmail.com>
 <CALzTN-Te0orET64uAAg9nfx8Nv4doyimQVowSbE31S89E+5WuA@mail.gmail.com>
 <CAKKNfuKpVkNxqezooafd96sZvAwz8pkebGNJ=WJ3N5Q6igTfEg@mail.gmail.com>
 <DM2PR07MB3500C847ED01886EB7FBE7BD8130@DM2PR07MB350.namprd07.prod.outlook.com>
Message-ID: <CAKKNfuKcdzgszyt2Q0Vw3=_8f06nn0At9rsbtCf3M_nsoJ0F-g@mail.gmail.com>

Thanks, it is indeed the case you describe.. Is there an ITK example I can
use as reference to implement the landmarkbasedtransform?
Matias.

El mi?., 11 de nov. de 2015 a la(s) 7:09 p. m., Andras Lasso <
lasso at queensu.ca> escribi?:

> It seems that you want to do a simple landmark registration (you touch
> exactly the same points with the stylus, in the same order, as you defined
> in the image). If this is the case, then you should not use ICP but
> itk::LandmarkBasedTransformInitializer (with optional preprocessing step
> to determine the scale), as it is done in this Slicer module:
>
>
> https://github.com/Slicer/Slicer/blob/master/Modules/CLI/FiducialRegistration/FiducialRegistration.cxx
>
>
>
> Andras
>
>
>
>
>
> *From:* Community [mailto:community-bounces at itk.org] *On Behalf Of *Matias
> Montroull
> *Sent:* Wednesday, November 11, 2015 4:58 PM
> *To:* Matt McCormick <matt.mccormick at kitware.com>
> *Cc:* insight-users at itk.org Users <insight-users at itk.org>
> *Subject:* Re: [ITK] [ITK-users] Pointset registration
>
>
>
> Yes, here it goes..
>
>
>
> you will notice there are points that I had to repeat, the original
> dataset was 4 points on each file and I was getting warnings: * Number of
> unknowns(12) greater than number of data (4)*
>
>
>
> "puntosfijos.txt" is the fixed pointsets
>
> "puntosflotantes.txt" is the moving pointset..
>
>
>
> Thanks for your help.
>
>
>
> Matias.
>
>
>
> El mi?., 11 de nov. de 2015 a la(s) 6:43 p. m., Matt McCormick <
> matt.mccormick at kitware.com> escribi?:
>
> Hi Matias,
>
> Can the datasets be shared?
>
> Thanks,
> Matt
>
> On Wed, Nov 11, 2015 at 4:38 PM, Matias Montroull <matimontg at gmail.com>
> wrote:
> > Thanks.
> >
> > Here's another question, it seems I need 12 points to perform the
> > registration and obtain the matrix, now, the results I'm getting are not
> > very good. We have the algorithm programmed manually (not using ITK) and
> > when we compare the results are different (way too different).
> > I just pulled the example and modified to 3 dimensions and changed the
> > translationtransform to an affine transform. Is there an example using
> > Affine that I can check? I'm thinking is not just changing the transform,
> > there may be other variables I need to tweak..
> > Matias.
> >
> > El mi?., 11 de nov. de 2015 a la(s) 5:51 p. m., D?enan Zuki?
> > <dzenanz at gmail.com> escribi?:
> >>
> >> Nowhere, which means it's the >> operator's standard white-space
> >> separators (spaces, tabs, newlines).
> >>
> >> On Wed, Nov 11, 2015 at 3:03 PM, Matias Montroull <matimontg at gmail.com>
> >> wrote:
> >>>
> >>> by the way, where in the code is the space separator specified?
> >>>
> >>> El mi?., 11 de nov. de 2015 a la(s) 5:02 p. m., Matias Montroull
> >>> <matimontg at gmail.com> escribi?:
> >>>>
> >>>> that worked! Thanks for the advise, I was under the impression that
> >>>> points needed to be separated by ";"
> >>>> Thanks again
> >>>>
> >>>> El mi?., 11 de nov. de 2015 a la(s) 5:00 p. m., D?enan Zuki?
> >>>> <dzenanz at gmail.com> escribi?:
> >>>>>
> >>>>> By looking at the code, the numbers should be separated by space, not
> >>>>> semicolon. Can you try that?
> >>>>>
> >>>>> HTH
> >>>>>
> >>>>> On Wed, Nov 11, 2015 at 2:51 PM, Matias Montroull <
> matimontg at gmail.com>
> >>>>> wrote:
> >>>>>>
> >>>>>> Hi D?enan, thanks for the suggestion, I tried that example and I
> think
> >>>>>> I'm missign something as my disk drive became crazy.
> >>>>>> I basically created 2 txt files with a set of 4 points each in this
> >>>>>> format:
> >>>>>> -0.585938;92.406328;38.200
> >>>>>> 44.7654;52.73442;61.000
> >>>>>> -53.5;49.218792;68.200
> >>>>>> -1.757814;81.445382;70.600
> >>>>>>
> >>>>>> second file has the same format but different numbers of course.
> >>>>>>
> >>>>>> Is there anything wrong with how I entered the point sets in both
> >>>>>> files?
> >>>>>>
> >>>>>> As you can see it is 3 points per line separated by this character
> ";"
> >>>>>>
> >>>>>> Thanks,
> >>>>>>
> >>>>>> Matias.
> >>>>>>
> >>>>>>
> >>>>>> El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., D?enan Zuki?
> >>>>>> <dzenanz at gmail.com> escribi?:
> >>>>>>>
> >>>>>>> Have you seen these two examples:
> >>>>>>>
> >>>>>>>
> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
> >>>>>>>
> >>>>>>>
> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
> >>>>>>>
> >>>>>>> HTH
> >>>>>>>
> >>>>>>> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull
> >>>>>>> <matimontg at gmail.com> wrote:
> >>>>>>>>
> >>>>>>>> Hi,
> >>>>>>>>
> >>>>>>>> I have 2 sets of points (one is points on an image and another one
> >>>>>>>> is points on a NDI tracker) and I need to obtain the
> transformation matrix.
> >>>>>>>> What would be the best method? I'm currently using a Solver but
> I'd like to
> >>>>>>>> implement this using ITK and better if it is SimpleITK.
> >>>>>>>>
> >>>>>>>> Thank you!
> >>>>>>>>
> >>>>>>>> Matias.
> >>>>>>>> --
> >>>>>>>> Matias
> >>>>>>>>
> >>>>>>>> _____________________________________
> >>>>>>>> Powered by www.kitware.com
> >>>>>>>>
> >>>>>>>> Visit other Kitware open-source projects at
> >>>>>>>> http://www.kitware.com/opensource/opensource.html
> >>>>>>>>
> >>>>>>>> Kitware offers ITK Training Courses, for more information visit:
> >>>>>>>> http://www.kitware.com/products/protraining.php
> >>>>>>>>
> >>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
> >>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
> >>>>>>>>
> >>>>>>>> Follow this link to subscribe/unsubscribe:
> >>>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
> >>>>>>>>
> >>>>>>>
> >>>>>> --
> >>>>>> Matias
> >>>>>
> >>>>>
> >>>> --
> >>>> Matias
> >>>
> >>> --
> >>> Matias
> >>
> >>
> > --
> > Matias
> >
> > _____________________________________
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Kitware offers ITK Training Courses, for more information visit:
> > http://www.kitware.com/products/protraining.php
> >
> > Please keep messages on-topic and check the ITK FAQ at:
> > http://www.itk.org/Wiki/ITK_FAQ
> >
> > Follow this link to subscribe/unsubscribe:
> > http://public.kitware.com/mailman/listinfo/insight-users
> >
>
> --
>
> Matias
>
-- 
Matias
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From matt.mccormick at kitware.com  Wed Nov 11 17:23:25 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 11 Nov 2015 17:23:25 -0500
Subject: [ITK] [ITK-users]   Pointset registration
In-Reply-To: <CAKKNfuKcdzgszyt2Q0Vw3=_8f06nn0At9rsbtCf3M_nsoJ0F-g@mail.gmail.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
 <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
 <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>
 <CAPf2UMQEx0O=Wk2FU0SvZzThHQDC0L-E5O1kng6Kf+G1+JVfKw@mail.gmail.com>
 <CAKKNfuL7Qp+3PEpXYp1G9Bqzp==WXTJG+Dzw5z0yTHYbFyeOgQ@mail.gmail.com>
 <CAKKNfuKUH1vXq0UGSQ0a1sYWeQx=hcZnELvbvBeMpoDp2gCb-w@mail.gmail.com>
 <CAPf2UMQT8Ni8rOUD8JpsyN6c5B0p58trT_GfHD2kjBHcohb5Gg@mail.gmail.com>
 <CAKKNfu+EsosxWk7OOH_MZ1rM9XgoK0ntXnjZgmDV2KDJYQf+cA@mail.gmail.com>
 <CALzTN-Te0orET64uAAg9nfx8Nv4doyimQVowSbE31S89E+5WuA@mail.gmail.com>
 <CAKKNfuKpVkNxqezooafd96sZvAwz8pkebGNJ=WJ3N5Q6igTfEg@mail.gmail.com>
 <DM2PR07MB3500C847ED01886EB7FBE7BD8130@DM2PR07MB350.namprd07.prod.outlook.com>
 <CAKKNfuKcdzgszyt2Q0Vw3=_8f06nn0At9rsbtCf3M_nsoJ0F-g@mail.gmail.com>
Message-ID: <CALzTN-SjMQsPF2utyd-pJ7Sy9ZC+eL_OtHhwO86XVAd=YdC5Lg@mail.gmail.com>

Hi Matias,

The examples for each class are linked in the class doxygen page [1].
There is a Wiki example for the LandmarkBasedTransformInitializer [2].

HTH,
Matt

[1] http://www.itk.org/Insight/Doxygen/html/classitk_1_1LandmarkBasedTransformInitializer.html

[2] http://www.itk.org/Insight/Doxygen/html/WikiExamples_2Registration_2LandmarkBasedTransformInitializer_8cxx-example.html#_a3

On Wed, Nov 11, 2015 at 5:15 PM, Matias Montroull <matimontg at gmail.com> wrote:
> Thanks, it is indeed the case you describe.. Is there an ITK example I can
> use as reference to implement the landmarkbasedtransform?
> Matias.
>
> El mi?., 11 de nov. de 2015 a la(s) 7:09 p. m., Andras Lasso
> <lasso at queensu.ca> escribi?:
>>
>> It seems that you want to do a simple landmark registration (you touch
>> exactly the same points with the stylus, in the same order, as you defined
>> in the image). If this is the case, then you should not use ICP but
>> itk::LandmarkBasedTransformInitializer (with optional preprocessing step to
>> determine the scale), as it is done in this Slicer module:
>>
>>
>> https://github.com/Slicer/Slicer/blob/master/Modules/CLI/FiducialRegistration/FiducialRegistration.cxx
>>
>>
>>
>> Andras
>>
>>
>>
>>
>>
>> From: Community [mailto:community-bounces at itk.org] On Behalf Of Matias
>> Montroull
>> Sent: Wednesday, November 11, 2015 4:58 PM
>> To: Matt McCormick <matt.mccormick at kitware.com>
>> Cc: insight-users at itk.org Users <insight-users at itk.org>
>> Subject: Re: [ITK] [ITK-users] Pointset registration
>>
>>
>>
>> Yes, here it goes..
>>
>>
>>
>> you will notice there are points that I had to repeat, the original
>> dataset was 4 points on each file and I was getting warnings:  Number of
>> unknowns(12) greater than number of data (4)
>>
>>
>>
>> "puntosfijos.txt" is the fixed pointsets
>>
>> "puntosflotantes.txt" is the moving pointset..
>>
>>
>>
>> Thanks for your help.
>>
>>
>>
>> Matias.
>>
>>
>>
>> El mi?., 11 de nov. de 2015 a la(s) 6:43 p. m., Matt McCormick
>> <matt.mccormick at kitware.com> escribi?:
>>
>> Hi Matias,
>>
>> Can the datasets be shared?
>>
>> Thanks,
>> Matt
>>
>> On Wed, Nov 11, 2015 at 4:38 PM, Matias Montroull <matimontg at gmail.com>
>> wrote:
>> > Thanks.
>> >
>> > Here's another question, it seems I need 12 points to perform the
>> > registration and obtain the matrix, now, the results I'm getting are not
>> > very good. We have the algorithm programmed manually (not using ITK) and
>> > when we compare the results are different (way too different).
>> > I just pulled the example and modified to 3 dimensions and changed the
>> > translationtransform to an affine transform. Is there an example using
>> > Affine that I can check? I'm thinking is not just changing the
>> > transform,
>> > there may be other variables I need to tweak..
>> > Matias.
>> >
>> > El mi?., 11 de nov. de 2015 a la(s) 5:51 p. m., D?enan Zuki?
>> > <dzenanz at gmail.com> escribi?:
>> >>
>> >> Nowhere, which means it's the >> operator's standard white-space
>> >> separators (spaces, tabs, newlines).
>> >>
>> >> On Wed, Nov 11, 2015 at 3:03 PM, Matias Montroull <matimontg at gmail.com>
>> >> wrote:
>> >>>
>> >>> by the way, where in the code is the space separator specified?
>> >>>
>> >>> El mi?., 11 de nov. de 2015 a la(s) 5:02 p. m., Matias Montroull
>> >>> <matimontg at gmail.com> escribi?:
>> >>>>
>> >>>> that worked! Thanks for the advise, I was under the impression that
>> >>>> points needed to be separated by ";"
>> >>>> Thanks again
>> >>>>
>> >>>> El mi?., 11 de nov. de 2015 a la(s) 5:00 p. m., D?enan Zuki?
>> >>>> <dzenanz at gmail.com> escribi?:
>> >>>>>
>> >>>>> By looking at the code, the numbers should be separated by space,
>> >>>>> not
>> >>>>> semicolon. Can you try that?
>> >>>>>
>> >>>>> HTH
>> >>>>>
>> >>>>> On Wed, Nov 11, 2015 at 2:51 PM, Matias Montroull
>> >>>>> <matimontg at gmail.com>
>> >>>>> wrote:
>> >>>>>>
>> >>>>>> Hi D?enan, thanks for the suggestion, I tried that example and I
>> >>>>>> think
>> >>>>>> I'm missign something as my disk drive became crazy.
>> >>>>>> I basically created 2 txt files with a set of 4 points each in this
>> >>>>>> format:
>> >>>>>> -0.585938;92.406328;38.200
>> >>>>>> 44.7654;52.73442;61.000
>> >>>>>> -53.5;49.218792;68.200
>> >>>>>> -1.757814;81.445382;70.600
>> >>>>>>
>> >>>>>> second file has the same format but different numbers of course.
>> >>>>>>
>> >>>>>> Is there anything wrong with how I entered the point sets in both
>> >>>>>> files?
>> >>>>>>
>> >>>>>> As you can see it is 3 points per line separated by this character
>> >>>>>> ";"
>> >>>>>>
>> >>>>>> Thanks,
>> >>>>>>
>> >>>>>> Matias.
>> >>>>>>
>> >>>>>>
>> >>>>>> El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., D?enan Zuki?
>> >>>>>> <dzenanz at gmail.com> escribi?:
>> >>>>>>>
>> >>>>>>> Have you seen these two examples:
>> >>>>>>>
>> >>>>>>>
>> >>>>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
>> >>>>>>>
>> >>>>>>>
>> >>>>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
>> >>>>>>>
>> >>>>>>> HTH
>> >>>>>>>
>> >>>>>>> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull
>> >>>>>>> <matimontg at gmail.com> wrote:
>> >>>>>>>>
>> >>>>>>>> Hi,
>> >>>>>>>>
>> >>>>>>>> I have 2 sets of points (one is points on an image and another
>> >>>>>>>> one
>> >>>>>>>> is points on a NDI tracker) and I need to obtain the
>> >>>>>>>> transformation matrix.
>> >>>>>>>> What would be the best method? I'm currently using a Solver but
>> >>>>>>>> I'd like to
>> >>>>>>>> implement this using ITK and better if it is SimpleITK.
>> >>>>>>>>
>> >>>>>>>> Thank you!
>> >>>>>>>>
>> >>>>>>>> Matias.
>> >>>>>>>> --
>> >>>>>>>> Matias
>> >>>>>>>>
>> >>>>>>>> _____________________________________
>> >>>>>>>> Powered by www.kitware.com
>> >>>>>>>>
>> >>>>>>>> Visit other Kitware open-source projects at
>> >>>>>>>> http://www.kitware.com/opensource/opensource.html
>> >>>>>>>>
>> >>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>> >>>>>>>> http://www.kitware.com/products/protraining.php
>> >>>>>>>>
>> >>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>> >>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>> >>>>>>>>
>> >>>>>>>> Follow this link to subscribe/unsubscribe:
>> >>>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>> >>>>>>>>
>> >>>>>>>
>> >>>>>> --
>> >>>>>> Matias
>> >>>>>
>> >>>>>
>> >>>> --
>> >>>> Matias
>> >>>
>> >>> --
>> >>> Matias
>> >>
>> >>
>> > --
>> > Matias
>> >
>> > _____________________________________
>> > Powered by www.kitware.com
>> >
>> > Visit other Kitware open-source projects at
>> > http://www.kitware.com/opensource/opensource.html
>> >
>> > Kitware offers ITK Training Courses, for more information visit:
>> > http://www.kitware.com/products/protraining.php
>> >
>> > Please keep messages on-topic and check the ITK FAQ at:
>> > http://www.itk.org/Wiki/ITK_FAQ
>> >
>> > Follow this link to subscribe/unsubscribe:
>> > http://public.kitware.com/mailman/listinfo/insight-users
>> >
>>
>> --
>>
>> Matias
>
> --
> Matias
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From dzenanz at gmail.com  Wed Nov 11 17:26:52 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 11 Nov 2015 17:26:52 -0500
Subject: [ITK] [ITK-users]   Pointset registration
In-Reply-To: <CALzTN-SjMQsPF2utyd-pJ7Sy9ZC+eL_OtHhwO86XVAd=YdC5Lg@mail.gmail.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
 <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
 <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>
 <CAPf2UMQEx0O=Wk2FU0SvZzThHQDC0L-E5O1kng6Kf+G1+JVfKw@mail.gmail.com>
 <CAKKNfuL7Qp+3PEpXYp1G9Bqzp==WXTJG+Dzw5z0yTHYbFyeOgQ@mail.gmail.com>
 <CAKKNfuKUH1vXq0UGSQ0a1sYWeQx=hcZnELvbvBeMpoDp2gCb-w@mail.gmail.com>
 <CAPf2UMQT8Ni8rOUD8JpsyN6c5B0p58trT_GfHD2kjBHcohb5Gg@mail.gmail.com>
 <CAKKNfu+EsosxWk7OOH_MZ1rM9XgoK0ntXnjZgmDV2KDJYQf+cA@mail.gmail.com>
 <CALzTN-Te0orET64uAAg9nfx8Nv4doyimQVowSbE31S89E+5WuA@mail.gmail.com>
 <CAKKNfuKpVkNxqezooafd96sZvAwz8pkebGNJ=WJ3N5Q6igTfEg@mail.gmail.com>
 <DM2PR07MB3500C847ED01886EB7FBE7BD8130@DM2PR07MB350.namprd07.prod.outlook.com>
 <CAKKNfuKcdzgszyt2Q0Vw3=_8f06nn0At9rsbtCf3M_nsoJ0F-g@mail.gmail.com>
 <CALzTN-SjMQsPF2utyd-pJ7Sy9ZC+eL_OtHhwO86XVAd=YdC5Lg@mail.gmail.com>
Message-ID: <CAPf2UMQJDaeKLHTDiPiw=zQPT-2XccULuiv3HCTrJygeXkgxYw@mail.gmail.com>

You could also try going straight to a numeric library, using singular
value decomposition
<http://eigen.tuxfamily.org/dox/classEigen_1_1JacobiSVD.html> to find your
3x4 transformation matrix. PointsVector*Matrix=AnotherPointsVector. It
could hardly get any simpler for a numeric library.

HTH

On Wed, Nov 11, 2015 at 5:23 PM, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Matias,
>
> The examples for each class are linked in the class doxygen page [1].
> There is a Wiki example for the LandmarkBasedTransformInitializer [2].
>
> HTH,
> Matt
>
> [1]
> http://www.itk.org/Insight/Doxygen/html/classitk_1_1LandmarkBasedTransformInitializer.html
>
> [2]
> http://www.itk.org/Insight/Doxygen/html/WikiExamples_2Registration_2LandmarkBasedTransformInitializer_8cxx-example.html#_a3
>
> On Wed, Nov 11, 2015 at 5:15 PM, Matias Montroull <matimontg at gmail.com>
> wrote:
> > Thanks, it is indeed the case you describe.. Is there an ITK example I
> can
> > use as reference to implement the landmarkbasedtransform?
> > Matias.
> >
> > El mi?., 11 de nov. de 2015 a la(s) 7:09 p. m., Andras Lasso
> > <lasso at queensu.ca> escribi?:
> >>
> >> It seems that you want to do a simple landmark registration (you touch
> >> exactly the same points with the stylus, in the same order, as you
> defined
> >> in the image). If this is the case, then you should not use ICP but
> >> itk::LandmarkBasedTransformInitializer (with optional preprocessing
> step to
> >> determine the scale), as it is done in this Slicer module:
> >>
> >>
> >>
> https://github.com/Slicer/Slicer/blob/master/Modules/CLI/FiducialRegistration/FiducialRegistration.cxx
> >>
> >>
> >>
> >> Andras
> >>
> >>
> >>
> >>
> >>
> >> From: Community [mailto:community-bounces at itk.org] On Behalf Of Matias
> >> Montroull
> >> Sent: Wednesday, November 11, 2015 4:58 PM
> >> To: Matt McCormick <matt.mccormick at kitware.com>
> >> Cc: insight-users at itk.org Users <insight-users at itk.org>
> >> Subject: Re: [ITK] [ITK-users] Pointset registration
> >>
> >>
> >>
> >> Yes, here it goes..
> >>
> >>
> >>
> >> you will notice there are points that I had to repeat, the original
> >> dataset was 4 points on each file and I was getting warnings:  Number of
> >> unknowns(12) greater than number of data (4)
> >>
> >>
> >>
> >> "puntosfijos.txt" is the fixed pointsets
> >>
> >> "puntosflotantes.txt" is the moving pointset..
> >>
> >>
> >>
> >> Thanks for your help.
> >>
> >>
> >>
> >> Matias.
> >>
> >>
> >>
> >> El mi?., 11 de nov. de 2015 a la(s) 6:43 p. m., Matt McCormick
> >> <matt.mccormick at kitware.com> escribi?:
> >>
> >> Hi Matias,
> >>
> >> Can the datasets be shared?
> >>
> >> Thanks,
> >> Matt
> >>
> >> On Wed, Nov 11, 2015 at 4:38 PM, Matias Montroull <matimontg at gmail.com>
> >> wrote:
> >> > Thanks.
> >> >
> >> > Here's another question, it seems I need 12 points to perform the
> >> > registration and obtain the matrix, now, the results I'm getting are
> not
> >> > very good. We have the algorithm programmed manually (not using ITK)
> and
> >> > when we compare the results are different (way too different).
> >> > I just pulled the example and modified to 3 dimensions and changed the
> >> > translationtransform to an affine transform. Is there an example using
> >> > Affine that I can check? I'm thinking is not just changing the
> >> > transform,
> >> > there may be other variables I need to tweak..
> >> > Matias.
> >> >
> >> > El mi?., 11 de nov. de 2015 a la(s) 5:51 p. m., D?enan Zuki?
> >> > <dzenanz at gmail.com> escribi?:
> >> >>
> >> >> Nowhere, which means it's the >> operator's standard white-space
> >> >> separators (spaces, tabs, newlines).
> >> >>
> >> >> On Wed, Nov 11, 2015 at 3:03 PM, Matias Montroull <
> matimontg at gmail.com>
> >> >> wrote:
> >> >>>
> >> >>> by the way, where in the code is the space separator specified?
> >> >>>
> >> >>> El mi?., 11 de nov. de 2015 a la(s) 5:02 p. m., Matias Montroull
> >> >>> <matimontg at gmail.com> escribi?:
> >> >>>>
> >> >>>> that worked! Thanks for the advise, I was under the impression that
> >> >>>> points needed to be separated by ";"
> >> >>>> Thanks again
> >> >>>>
> >> >>>> El mi?., 11 de nov. de 2015 a la(s) 5:00 p. m., D?enan Zuki?
> >> >>>> <dzenanz at gmail.com> escribi?:
> >> >>>>>
> >> >>>>> By looking at the code, the numbers should be separated by space,
> >> >>>>> not
> >> >>>>> semicolon. Can you try that?
> >> >>>>>
> >> >>>>> HTH
> >> >>>>>
> >> >>>>> On Wed, Nov 11, 2015 at 2:51 PM, Matias Montroull
> >> >>>>> <matimontg at gmail.com>
> >> >>>>> wrote:
> >> >>>>>>
> >> >>>>>> Hi D?enan, thanks for the suggestion, I tried that example and I
> >> >>>>>> think
> >> >>>>>> I'm missign something as my disk drive became crazy.
> >> >>>>>> I basically created 2 txt files with a set of 4 points each in
> this
> >> >>>>>> format:
> >> >>>>>> -0.585938;92.406328;38.200
> >> >>>>>> 44.7654;52.73442;61.000
> >> >>>>>> -53.5;49.218792;68.200
> >> >>>>>> -1.757814;81.445382;70.600
> >> >>>>>>
> >> >>>>>> second file has the same format but different numbers of course.
> >> >>>>>>
> >> >>>>>> Is there anything wrong with how I entered the point sets in both
> >> >>>>>> files?
> >> >>>>>>
> >> >>>>>> As you can see it is 3 points per line separated by this
> character
> >> >>>>>> ";"
> >> >>>>>>
> >> >>>>>> Thanks,
> >> >>>>>>
> >> >>>>>> Matias.
> >> >>>>>>
> >> >>>>>>
> >> >>>>>> El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., D?enan Zuki?
> >> >>>>>> <dzenanz at gmail.com> escribi?:
> >> >>>>>>>
> >> >>>>>>> Have you seen these two examples:
> >> >>>>>>>
> >> >>>>>>>
> >> >>>>>>>
> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
> >> >>>>>>>
> >> >>>>>>>
> >> >>>>>>>
> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
> >> >>>>>>>
> >> >>>>>>> HTH
> >> >>>>>>>
> >> >>>>>>> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull
> >> >>>>>>> <matimontg at gmail.com> wrote:
> >> >>>>>>>>
> >> >>>>>>>> Hi,
> >> >>>>>>>>
> >> >>>>>>>> I have 2 sets of points (one is points on an image and another
> >> >>>>>>>> one
> >> >>>>>>>> is points on a NDI tracker) and I need to obtain the
> >> >>>>>>>> transformation matrix.
> >> >>>>>>>> What would be the best method? I'm currently using a Solver but
> >> >>>>>>>> I'd like to
> >> >>>>>>>> implement this using ITK and better if it is SimpleITK.
> >> >>>>>>>>
> >> >>>>>>>> Thank you!
> >> >>>>>>>>
> >> >>>>>>>> Matias.
> >> >>>>>>>> --
> >> >>>>>>>> Matias
> >> >>>>>>>>
> >> >>>>>>>> _____________________________________
> >> >>>>>>>> Powered by www.kitware.com
> >> >>>>>>>>
> >> >>>>>>>> Visit other Kitware open-source projects at
> >> >>>>>>>> http://www.kitware.com/opensource/opensource.html
> >> >>>>>>>>
> >> >>>>>>>> Kitware offers ITK Training Courses, for more information
> visit:
> >> >>>>>>>> http://www.kitware.com/products/protraining.php
> >> >>>>>>>>
> >> >>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
> >> >>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
> >> >>>>>>>>
> >> >>>>>>>> Follow this link to subscribe/unsubscribe:
> >> >>>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
> >> >>>>>>>>
> >> >>>>>>>
> >> >>>>>> --
> >> >>>>>> Matias
> >> >>>>>
> >> >>>>>
> >> >>>> --
> >> >>>> Matias
> >> >>>
> >> >>> --
> >> >>> Matias
> >> >>
> >> >>
> >> > --
> >> > Matias
> >> >
> >> > _____________________________________
> >> > Powered by www.kitware.com
> >> >
> >> > Visit other Kitware open-source projects at
> >> > http://www.kitware.com/opensource/opensource.html
> >> >
> >> > Kitware offers ITK Training Courses, for more information visit:
> >> > http://www.kitware.com/products/protraining.php
> >> >
> >> > Please keep messages on-topic and check the ITK FAQ at:
> >> > http://www.itk.org/Wiki/ITK_FAQ
> >> >
> >> > Follow this link to subscribe/unsubscribe:
> >> > http://public.kitware.com/mailman/listinfo/insight-users
> >> >
> >>
> >> --
> >>
> >> Matias
> >
> > --
> > Matias
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
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_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
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Kitware offers ITK Training Courses, for more information visit:
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From lasso at queensu.ca  Wed Nov 11 17:09:01 2015
From: lasso at queensu.ca (Andras Lasso)
Date: Wed, 11 Nov 2015 22:09:01 +0000
Subject: [ITK] [ITK-users]   Pointset registration
In-Reply-To: <CAKKNfuKpVkNxqezooafd96sZvAwz8pkebGNJ=WJ3N5Q6igTfEg@mail.gmail.com>
References: <CAKKNfuLX=6ntsiFc_iXTpHGr2cGdOfNpjZZMacMjF6BuYoy-7Q@mail.gmail.com>
 <CAPf2UMRbSffEF0GFYs6n9nmgMOShCnbMAksXDWrYBGKFHnuSmQ@mail.gmail.com>
 <CAKKNfu+NXaRcAWJOgJUA+1GEiaG_whSRAFqYhB26O2m2LLqsVg@mail.gmail.com>
 <CAPf2UMQEx0O=Wk2FU0SvZzThHQDC0L-E5O1kng6Kf+G1+JVfKw@mail.gmail.com>
 <CAKKNfuL7Qp+3PEpXYp1G9Bqzp==WXTJG+Dzw5z0yTHYbFyeOgQ@mail.gmail.com>
 <CAKKNfuKUH1vXq0UGSQ0a1sYWeQx=hcZnELvbvBeMpoDp2gCb-w@mail.gmail.com>
 <CAPf2UMQT8Ni8rOUD8JpsyN6c5B0p58trT_GfHD2kjBHcohb5Gg@mail.gmail.com>
 <CAKKNfu+EsosxWk7OOH_MZ1rM9XgoK0ntXnjZgmDV2KDJYQf+cA@mail.gmail.com>
 <CALzTN-Te0orET64uAAg9nfx8Nv4doyimQVowSbE31S89E+5WuA@mail.gmail.com>
 <CAKKNfuKpVkNxqezooafd96sZvAwz8pkebGNJ=WJ3N5Q6igTfEg@mail.gmail.com>
Message-ID: <DM2PR07MB3500C847ED01886EB7FBE7BD8130@DM2PR07MB350.namprd07.prod.outlook.com>

It seems that you want to do a simple landmark registration (you touch exactly the same points with the stylus, in the same order, as you defined in the image). If this is the case, then you should not use ICP but itk::LandmarkBasedTransformInitializer (with optional preprocessing step to determine the scale), as it is done in this Slicer module:
https://github.com/Slicer/Slicer/blob/master/Modules/CLI/FiducialRegistration/FiducialRegistration.cxx

Andras


From: Community [mailto:community-bounces at itk.org] On Behalf Of Matias Montroull
Sent: Wednesday, November 11, 2015 4:58 PM
To: Matt McCormick <matt.mccormick at kitware.com>
Cc: insight-users at itk.org Users <insight-users at itk.org>
Subject: Re: [ITK] [ITK-users] Pointset registration

Yes, here it goes..

you will notice there are points that I had to repeat, the original dataset was 4 points on each file and I was getting warnings:  Number of unknowns(12) greater than number of data (4)

"puntosfijos.txt" is the fixed pointsets
"puntosflotantes.txt" is the moving pointset..

Thanks for your help.

Matias.

El mi?., 11 de nov. de 2015 a la(s) 6:43 p. m., Matt McCormick <matt.mccormick at kitware.com<mailto:matt.mccormick at kitware.com>> escribi?:
Hi Matias,

Can the datasets be shared?

Thanks,
Matt

On Wed, Nov 11, 2015 at 4:38 PM, Matias Montroull <matimontg at gmail.com<mailto:matimontg at gmail.com>> wrote:
> Thanks.
>
> Here's another question, it seems I need 12 points to perform the
> registration and obtain the matrix, now, the results I'm getting are not
> very good. We have the algorithm programmed manually (not using ITK) and
> when we compare the results are different (way too different).
> I just pulled the example and modified to 3 dimensions and changed the
> translationtransform to an affine transform. Is there an example using
> Affine that I can check? I'm thinking is not just changing the transform,
> there may be other variables I need to tweak..
> Matias.
>
> El mi?., 11 de nov. de 2015 a la(s) 5:51 p. m., D?enan Zuki?
> <dzenanz at gmail.com<mailto:dzenanz at gmail.com>> escribi?:
>>
>> Nowhere, which means it's the >> operator's standard white-space
>> separators (spaces, tabs, newlines).
>>
>> On Wed, Nov 11, 2015 at 3:03 PM, Matias Montroull <matimontg at gmail.com<mailto:matimontg at gmail.com>>
>> wrote:
>>>
>>> by the way, where in the code is the space separator specified?
>>>
>>> El mi?., 11 de nov. de 2015 a la(s) 5:02 p. m., Matias Montroull
>>> <matimontg at gmail.com<mailto:matimontg at gmail.com>> escribi?:
>>>>
>>>> that worked! Thanks for the advise, I was under the impression that
>>>> points needed to be separated by ";"
>>>> Thanks again
>>>>
>>>> El mi?., 11 de nov. de 2015 a la(s) 5:00 p. m., D?enan Zuki?
>>>> <dzenanz at gmail.com<mailto:dzenanz at gmail.com>> escribi?:
>>>>>
>>>>> By looking at the code, the numbers should be separated by space, not
>>>>> semicolon. Can you try that?
>>>>>
>>>>> HTH
>>>>>
>>>>> On Wed, Nov 11, 2015 at 2:51 PM, Matias Montroull <matimontg at gmail.com<mailto:matimontg at gmail.com>>
>>>>> wrote:
>>>>>>
>>>>>> Hi D?enan, thanks for the suggestion, I tried that example and I think
>>>>>> I'm missign something as my disk drive became crazy.
>>>>>> I basically created 2 txt files with a set of 4 points each in this
>>>>>> format:
>>>>>> -0.585938;92.406328;38.200
>>>>>> 44.7654;52.73442;61.000
>>>>>> -53.5;49.218792;68.200
>>>>>> -1.757814;81.445382;70.600
>>>>>>
>>>>>> second file has the same format but different numbers of course.
>>>>>>
>>>>>> Is there anything wrong with how I entered the point sets in both
>>>>>> files?
>>>>>>
>>>>>> As you can see it is 3 points per line separated by this character ";"
>>>>>>
>>>>>> Thanks,
>>>>>>
>>>>>> Matias.
>>>>>>
>>>>>>
>>>>>> El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., D?enan Zuki?
>>>>>> <dzenanz at gmail.com<mailto:dzenanz at gmail.com>> escribi?:
>>>>>>>
>>>>>>> Have you seen these two examples:
>>>>>>>
>>>>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
>>>>>>>
>>>>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
>>>>>>>
>>>>>>> HTH
>>>>>>>
>>>>>>> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull
>>>>>>> <matimontg at gmail.com<mailto:matimontg at gmail.com>> wrote:
>>>>>>>>
>>>>>>>> Hi,
>>>>>>>>
>>>>>>>> I have 2 sets of points (one is points on an image and another one
>>>>>>>> is points on a NDI tracker) and I need to obtain the transformation matrix.
>>>>>>>> What would be the best method? I'm currently using a Solver but I'd like to
>>>>>>>> implement this using ITK and better if it is SimpleITK.
>>>>>>>>
>>>>>>>> Thank you!
>>>>>>>>
>>>>>>>> Matias.
>>>>>>>> --
>>>>>>>> Matias
>>>>>>>>
>>>>>>>> _____________________________________
>>>>>>>> Powered by www.kitware.com<http://www.kitware.com>
>>>>>>>>
>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>
>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>> http://www.kitware.com/products/protraining.php
>>>>>>>>
>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>
>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>>
>>>>>>>
>>>>>> --
>>>>>> Matias
>>>>>
>>>>>
>>>> --
>>>> Matias
>>>
>>> --
>>> Matias
>>
>>
> --
> Matias
>
> _____________________________________
> Powered by www.kitware.com<http://www.kitware.com>
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
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>
--
Matias
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From mlt.khawla at gmail.com  Thu Nov 12 07:39:46 2015
From: mlt.khawla at gmail.com (Daoued23)
Date: Thu, 12 Nov 2015 05:39:46 -0700 (MST)
Subject: [ITK] [ITK-users] itk::BinaryThinningImageFilter3D
In-Reply-To: <CAJqi3E+kKumx7P97cu5bZb2Xav=E2cMiUz-UM-ufSDnW67PeYQ@mail.gmail.com>
References: <1447230797460-36449.post@n7.nabble.com>
 <CALzTN-QBNy-rhwcK==3ZMJZcLRvRtWnvfJmGu8KLgLn-cFuBEQ@mail.gmail.com>
 <CAJqi3E+kKumx7P97cu5bZb2Xav=E2cMiUz-UM-ufSDnW67PeYQ@mail.gmail.com>
Message-ID: <1447331986256-36465.post@n7.nabble.com>

Well, i tried it on a volume with more resolution, but I don't seem to get
the correct results.
Here is the input volume 
<http://itk-users.7.n7.nabble.com/file/n36465/8585.png> 


And here is the slice visualisation (in 3D we can see anything of the
thinned volume), the first image is the input volume, the second is the
thinned one.

<http://itk-users.7.n7.nabble.com/file/n36465/212121.png> 

<http://itk-users.7.n7.nabble.com/file/n36465/2121.png> 

Francisco can you walk me through what you did to get the correct skeleton?



--
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_____________________________________
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From mlt.khawla at gmail.com  Thu Nov 12 07:42:44 2015
From: mlt.khawla at gmail.com (Daoued23)
Date: Thu, 12 Nov 2015 05:42:44 -0700 (MST)
Subject: [ITK] [ITK-users] Euler Number of 3D object
In-Reply-To: <CAPf2UMQ-r4o7oK2K6yShi3uF8TH9FGyjkPH3PssHpER+ayFu_w@mail.gmail.com>
References: <1446734359688-36432.post@n7.nabble.com>
 <CAPf2UMQ-r4o7oK2K6yShi3uF8TH9FGyjkPH3PssHpER+ayFu_w@mail.gmail.com>
Message-ID: <1447332164660-36466.post@n7.nabble.com>

Thanks a lot D?enan.



--
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From dzenanz at gmail.com  Thu Nov 12 08:37:57 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Thu, 12 Nov 2015 08:37:57 -0500
Subject: [ITK] [ITK-users] itk::BinaryThinningImageFilter3D
In-Reply-To: <1447331986256-36465.post@n7.nabble.com>
References: <1447230797460-36449.post@n7.nabble.com>
 <CALzTN-QBNy-rhwcK==3ZMJZcLRvRtWnvfJmGu8KLgLn-cFuBEQ@mail.gmail.com>
 <CAJqi3E+kKumx7P97cu5bZb2Xav=E2cMiUz-UM-ufSDnW67PeYQ@mail.gmail.com>
 <1447331986256-36465.post@n7.nabble.com>
Message-ID: <CAPf2UMTim2=_LvRn0iV==36Zyjh+CP7iRv5cCE=sGaSr01RW5w@mail.gmail.com>

Hi Daoued,

It seems to me that the image you are using is not very amenable to
skeletonization. Have you tried applying it to something like airways in
the lung or branches of a tree? Or in fact anything which does not have a
lot of holes in it like that sponge you are trying to skeletonize?

Regards

On Thu, Nov 12, 2015 at 7:39 AM, Daoued23 <mlt.khawla at gmail.com> wrote:

> Well, i tried it on a volume with more resolution, but I don't seem to get
> the correct results.
> Here is the input volume
> <http://itk-users.7.n7.nabble.com/file/n36465/8585.png>
>
>
> And here is the slice visualisation (in 3D we can see anything of the
> thinned volume), the first image is the input volume, the second is the
> thinned one.
>
> <http://itk-users.7.n7.nabble.com/file/n36465/212121.png>
>
> <http://itk-users.7.n7.nabble.com/file/n36465/2121.png>
>
> Francisco can you walk me through what you did to get the correct skeleton?
>
>
>
> --
> View this message in context:
> http://itk-users.7.n7.nabble.com/itk-BinaryThinningImageFilter3D-tp36449p36465.html
> Sent from the ITK - Users mailing list archive at Nabble.com.
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
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From mlt.khawla at gmail.com  Thu Nov 12 08:11:45 2015
From: mlt.khawla at gmail.com (Daoued23)
Date: Thu, 12 Nov 2015 06:11:45 -0700 (MST)
Subject: [ITK] [ITK-users] itk::BinaryThinningImageFilter3D
In-Reply-To: <CAPf2UMTim2=_LvRn0iV==36Zyjh+CP7iRv5cCE=sGaSr01RW5w@mail.gmail.com>
References: <1447230797460-36449.post@n7.nabble.com>
 <CALzTN-QBNy-rhwcK==3ZMJZcLRvRtWnvfJmGu8KLgLn-cFuBEQ@mail.gmail.com>
 <CAJqi3E+kKumx7P97cu5bZb2Xav=E2cMiUz-UM-ufSDnW67PeYQ@mail.gmail.com>
 <1447331986256-36465.post@n7.nabble.com>
 <CAPf2UMTim2=_LvRn0iV==36Zyjh+CP7iRv5cCE=sGaSr01RW5w@mail.gmail.com>
Message-ID: <1447333905475-36468.post@n7.nabble.com>

I tried it on a simple rectangular parallelepiped 
<http://itk-users.7.n7.nabble.com/file/n36468/14.png> , I am supposed to get
this skeleton  <http://itk-users.7.n7.nabble.com/file/n36468/16.png> , but
when I apply itk::BinaryThinningImageFilter3D I only get this 
<http://itk-users.7.n7.nabble.com/file/n36468/13.png> .



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From franciscolopezdelafranca at gmail.com  Thu Nov 12 09:00:43 2015
From: franciscolopezdelafranca at gmail.com (Francisco Lopez de la Franca)
Date: Thu, 12 Nov 2015 15:00:43 +0100
Subject: [ITK] [ITK-users] itk::BinaryThinningImageFilter3D
In-Reply-To: <1447331986256-36465.post@n7.nabble.com>
References: <1447230797460-36449.post@n7.nabble.com>
 <CALzTN-QBNy-rhwcK==3ZMJZcLRvRtWnvfJmGu8KLgLn-cFuBEQ@mail.gmail.com>
 <CAJqi3E+kKumx7P97cu5bZb2Xav=E2cMiUz-UM-ufSDnW67PeYQ@mail.gmail.com>
 <1447331986256-36465.post@n7.nabble.com>
Message-ID: <CAJqi3EJ8DCsPp3qTzK5JOvtTsQioH5fLUiy=DEH-6Xmp0X5-JQ@mail.gmail.com>

Looking at your code, everything seems to be ok. I coded the same
instructions.
My image was a T1 or FLAIR MRI image in NIFTI format.
Anyway, what is the result you are expecting, because maybe your result is
correct?

2015-11-12 13:39 GMT+01:00 Daoued23 <mlt.khawla at gmail.com>:

> Well, i tried it on a volume with more resolution, but I don't seem to get
> the correct results.
> Here is the input volume
> <http://itk-users.7.n7.nabble.com/file/n36465/8585.png>
>
>
> And here is the slice visualisation (in 3D we can see anything of the
> thinned volume), the first image is the input volume, the second is the
> thinned one.
>
> <http://itk-users.7.n7.nabble.com/file/n36465/212121.png>
>
> <http://itk-users.7.n7.nabble.com/file/n36465/2121.png>
>
> Francisco can you walk me through what you did to get the correct skeleton?
>
>
>
> --
> View this message in context:
> http://itk-users.7.n7.nabble.com/itk-BinaryThinningImageFilter3D-tp36449p36465.html
> Sent from the ITK - Users mailing list archive at Nabble.com.
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
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From mlt.khawla at gmail.com  Thu Nov 12 08:36:46 2015
From: mlt.khawla at gmail.com (Daoued23)
Date: Thu, 12 Nov 2015 06:36:46 -0700 (MST)
Subject: [ITK] [ITK-users] itk::BinaryThinningImageFilter3D
In-Reply-To: <CAJqi3EJ8DCsPp3qTzK5JOvtTsQioH5fLUiy=DEH-6Xmp0X5-JQ@mail.gmail.com>
References: <1447230797460-36449.post@n7.nabble.com>
 <CALzTN-QBNy-rhwcK==3ZMJZcLRvRtWnvfJmGu8KLgLn-cFuBEQ@mail.gmail.com>
 <CAJqi3E+kKumx7P97cu5bZb2Xav=E2cMiUz-UM-ufSDnW67PeYQ@mail.gmail.com>
 <1447331986256-36465.post@n7.nabble.com>
 <CAJqi3EJ8DCsPp3qTzK5JOvtTsQioH5fLUiy=DEH-6Xmp0X5-JQ@mail.gmail.com>
Message-ID: <1447335406758-36470.post@n7.nabble.com>

I want to get a thinned volume with the same topology as the input volume. It
is mentioned that the "connectivity is preserved" when applying this filter,
but you can see (through my example) that it is not.



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From chinander at gmail.com  Thu Nov 12 10:07:24 2015
From: chinander at gmail.com (Mike Chinander)
Date: Thu, 12 Nov 2015 09:07:24 -0600
Subject: [ITK] [ITK-users] Definition of ITK orientation code
In-Reply-To: <CAJYHnFKoE5GCKyzR6ot1UdLJNGq2uFQMTfKrmGBafTdZHhfsgQ@mail.gmail.com>
References: <CAJYHnFKoE5GCKyzR6ot1UdLJNGq2uFQMTfKrmGBafTdZHhfsgQ@mail.gmail.com>
Message-ID: <CAEb_q0co=J8ditrhK=yyj4FD=r2jK6o6Thij7yaG0eOgaM8n7w@mail.gmail.com>

Which part do you think is incorrect? Be aware that 'right to left' in this
sense is the patient's right and left.

On Thu, Nov 12, 2015 at 8:45 AM, Mihail Isakov via Insight-users <
insight-users at itk.org> wrote:

> Is the definition of ITK orientation code below correct?
>
> "The orientation code maps the voxel coordinate system I (column) J
> (row) K (slice) to patient's right-handed coordinate system X Y Z.
> Minor rank notation is used, characters R, L, A, P, I, S identify
> 'from' direction.
>
> RAI means:
> X: Right to left
> Y: Anterior to  posterior
> Z: Inferior to superior
>
> Note: sometimes major rank notation ('to') is used, the same
> coordinate system may be called DICOM LPS or Nrrd
> left-posterior-superior (right to Left, anterior to Posterior,
> inferior to Superior)."
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
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From luc.hermitte at c-s.fr  Thu Nov 12 12:17:59 2015
From: luc.hermitte at c-s.fr (Luc Hermitte)
Date: Thu, 12 Nov 2015 18:17:59 +0100
Subject: [ITK] [ITK-dev] About the last optimization on VariableLengthVector
Message-ID: <5644C9C7.6030603@c-s.fr>

Hello,

I've pushed a patch that illustrate a way to have better performances
with VariableLengthVectors (VLV).
    http://review.source.kitware.com/#/c/20389/
I suspect, this patch will need some discussions.

You'll find a descriptions of where I wish to go, of the problems
encountered on the way, and of possible solutions.

The biggest issue is how to have thread-safe cached variables in
functions that were pure functions until now, and still keep the code as
simple as possible, and minimize the number of modifications required to
improve the code base (regarding performances on VLV)


Regards
--Luc Hermitte



This is the final step of the performances enhancements to be made on
VLV in order to have performances on par with monoband itk::Image<>.

This patch won't pass tests. This is known.
I still have to reorganize the new code and to document it.

It's meant to illustrate different possibilities and issues to be
solved. Here is a short summary. Let discuss on the mailing list.

The *purpose* of this patch (and the previous ones as well) is to
eliminate allocations made of each pixel.

This will permit (on a Linear Interpolation test case to reduce the
computation time, on a VectorImage, from 85s to 27s -- it was around 2
minutes before the first patches, and on the same image read as an
itk::Image it takes ~15-17s)

First problem: PixelType Evalutate(...);
Currently, when we apply an ImageFunction, we call Evaluate() function
which requires the creation of a new VLV. Indeed this function return a
new pixel value by value.
The only way to get rid of the variable creation is to return the new
value as an output reference parameter.

This means all classes that inherit from ImageFunction will need to
change the signature of their EvaluateXxxx() functions. And that all
client classes must take this into account. In other words, many
modifications will be required if we want to have better performances on
VLV.

Note however, it's quite simple to migrate gradually the source code to
the new interface : we can have all client code explicitly use the new
(and badly named) EvaluateNoCopy(), which in turn call the old
Evaluate() -- or the other way around (which has a drawback regarding
cached variables).

Second Problem: Temporary pixel values
Some computations will produce new pixel values. For instance
  p = p0 + (p1 - p0) * d;
produces 3 new pixels values.
This has already been taken care of in the previous patches thanks to
Expression Templates.

Third Problem: Local Variables
3.1- Auxiliary variables
Some algorithms (e.g. BSplines interpolations) require dynamic data
structures like matrices. This implies allocation at each iteration.
This particular problem isn't addressed in this patch. The solution to
3.2 will help to provide an solution.

3.2- Factorized computations
Sometimes, a complex computation will take advantage of code
factorisation (easier to maintain, and better performances). e.g.

   Pixel p4 = p0 + (p1 - p0) * d0
   Pixel p5 = p2 + (p3 - p2) * d1
   output = p4 + (p5 - p4) * d2

This implies new pixel values, hence dynamic allocations.

In c++11, we could (almost) have written
   auto p4 = p0 + (p1 - p0) * d0

Except that p4 is an expression template. Its type is quite complex to
express in plain C++98/03. But the problem will be that the current
implementation of expression templates uses references. Here p4 will be
made of dangling references, the code would be bugged.
Workarounds would be possible in C++11 as it will permit us to
distinguish lvalue references from rvalue references in order to copy
the latter, and keep references to the former.
We are not in C++11 yet. Moreover, this would not factorize the
computations.

We need a C++98 solution.
The only way I see is to rely on cached variables.
This means that the ImageFunctions are no longer [[pure]] functions :
they'll mutate some variables that we want to allocate once per
ImageFunction and ... per thread.
Indeed the ImageFunctions shall be reentrant.

I was first hoping to use thread_local variables. Alas they cannot be
non-static attributes. This is a problem: if I'm not wrong, a same
ImageFunction could be used multiple times in a same processing chain.

We still have a simple solution, but it requires a second modification
to Evaluate() signature: we need to pass the current ThreadId.

The new drawback: code migration requires more work. We can not write
Evaluate() in terms of EvaluateNoCopy() as the latter requires the
threadId that the former doesn't know. This is the reason why I expect
the tests to fail.
Instead we need to convert all client code (like the WarpImageFilter)
and have the default implementation of EvaluateNoCopy() to call the
already written and not yet converted Evalutate().

Fourth Problem: heterogeneous data types (i.e. castings)
The input image type, the output image type, and the internal pixel type
may all be different. That's why the code contain so many static_casts.

Alas a static_cast<> on pixels will induce the creation of new pixel values.
This is contrary to the purpose of this patch.
Copy constructors and assignment operators already support on-the-fly
implicit static_casting.
We still need to be able to require casting only when it's required.
That's where the new function CastInto(), MoveInto() and As() come into
rescue.

Alas, all ImageFunction codes will need to be converted to use these
functions.

_______________________________________________
Powered by www.kitware.com

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http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
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Please keep messages on-topic and check the ITK FAQ at:
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From matt.mccormick at kitware.com  Thu Nov 12 13:33:51 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Thu, 12 Nov 2015 13:33:51 -0500
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
Message-ID: <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>

Hi Tunde,

I mistakenly thought you were working on the "release" branch, so I
expected the commands to run would be

  git checkout release
  git pull

If you were not working on the release branch, it can be created locally with

  git checkout -b release origin/release
  git pull

It is possible to also directly get the patch from Gerrit, but not do
use the 'pull' line for this case.  Instead, use the 'checkout' line,
i.e.

  git fetch http://review.source.kitware.com/ITK
refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054

Note that "-b CMP0054" was added to give a branch name.

But, the 4.8.2 archives were just created from the latest "release"
branch, so those can be tried too:

  https://sourceforge.net/projects/itk/files/itk/4.8/


Thanks for testing and providing feedback.

Matt

On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
<a.tunde.szilagyi at gmail.com> wrote:
> Hi Matt,
>
> I have pulled the suggested patch, but I am having the error message
> attached. I would appreciate any feedback from anyone.
>
> Many thanks in advance.
>
> Best wishes,
> Tunde
>
> On 5 November 2015 at 21:04, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Hi Tunde,
>>
>> These CMake warnings are addressed by this patch:
>>
>>   http://review.source.kitware.com/#/c/20154/1
>>
>> which I just backported to the "release" branch. Please 'git pull' to
>> fetch the changes.
>>
>> Please let the list know if there are any other issues.  According to
>> the dashboard, there are also some warnings to address:
>>
>>    https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
>>
>> Patches for these warnings would be welcome :-)
>>
>> Thanks,
>> Matt
>>
>> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
>> <a.tunde.szilagyi at gmail.com> wrote:
>> > Hi Matt,
>> >
>> > Thank you, this fixed some of the problems I was facing. Now I can build
>> > some packages except the ITKNumerics, ITKStatistics and ITKFEM. I have
>> > attached the error message that I received in CMAKE. There are no
>> > explanations in the MS VS 2015 during build.
>> >
>> > Many thanks in advance.
>> >
>> > Tunde
>> >
>> >
>> > On 5 November 2015 at 16:22, Matt McCormick <matt.mccormick at kitware.com>
>> > wrote:
>> >>
>> >> Hi Tunde,
>> >>
>> >> A few pointers:
>> >>
>> >> - Use ITK Git master [1], which has support for Visual Studio 2015
>> >> (support is not available in ITK 4.8.1).
>> >> - If wrapping is built, ITK Git master also builds much faster.
>> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
>> >> configuration to greatly improve the build time.
>> >>
>> >> HTH,
>> >> Matt
>> >>
>> >> [1] http://www.itk.org/Wiki/ITK/Git
>> >>
>> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
>> >> <a.tunde.szilagyi at gmail.com> wrote:
>> >> > Dear Brad,
>> >> >
>> >> > Thank you for your feedback. I figured out that my error occurs
>> >> > during
>> >> > CMake
>> >> > Configuration. I have attached an error message that I receive. Files
>> >> > from
>> >> > the same family are throwing this error - all start with
>> >> > cmTC_XXXXX.exe
>> >> > (see
>> >> > attached Screen Shoot). If I ignore this and Build All in MS Visual
>> >> > Studio
>> >> > the Debug and Release is not populated (And there are no error
>> >> > messages
>> >> > either.). I would appreciate any insight into this.
>> >> >
>> >> > Many thanks.
>> >> > Tunde
>> >> >
>> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
>> >> > <blowekamp at mail.nih.gov>
>> >> > wrote:
>> >> >>
>> >> >> Hello,
>> >> >>
>> >> >> I don't think I have built ITK with the MS VS 12 2015 GUI. But I do
>> >> >> have a
>> >> >> dashboard build with the compiler:
>> >> >>
>> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
>> >> >>
>> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual machine.
>> >> >>
>> >> >> Perhaps you could try building from the command line with cmake?
>> >> >>
>> >> >> cmake --build . --config Release
>> >> >>
>> >> >>
>> >> >>
>> >> >> HTH,
>> >> >> Brad
>> >> >>
>> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
>> >> >> <a.tunde.szilagyi at gmail.com>
>> >> >> wrote:
>> >> >>
>> >> >> Dear All,
>> >> >>
>> >> >> I would be interested what is the expected time to build all the ITK
>> >> >> libraries for the first time in Microsoft Visual Studio 14 2015. It
>> >> >> shows me
>> >> >> that there 492 projects to build. It has been running for more then
>> >> >> 17h
>> >> >> on a
>> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error message.
>> >> >> Perhaps
>> >> >> I misunderstood this process?
>> >> >>
>> >> >> Many thanks.
>> >> >>
>> >> >> Best wishes,
>> >> >> Tunde Szilagyi
>> >> >> _______________________________________________
>> >> >> Community mailing list
>> >> >> Community at itk.org
>> >> >> http://public.kitware.com/mailman/listinfo/community
>> >> >>
>> >> >>
>> >> >
>> >> >
>> >> >
>> >> > _______________________________________________
>> >> > Community mailing list
>> >> > Community at itk.org
>> >> > http://public.kitware.com/mailman/listinfo/community
>> >> >
>> >
>> >
>
>

From matt.mccormick at kitware.com  Thu Nov 12 15:05:36 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Thu, 12 Nov 2015 15:05:36 -0500
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
 <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
 <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>
Message-ID: <CALzTN-THQzM4cuG8kmJAtCtZuB3hpL6J6Y-iDsVmVbjGsF1k=w@mail.gmail.com>

Hi Tunde,

The prompt indicates the repository is an intermediate state
(MERGING), and git is not allowing the requested actions because it
does not want changes made in that intermediate state to get lost.

To get out of the intermediate state, use

  git reset --hard origin/master

then try again.

HTH,
Matt

On Thu, Nov 12, 2015 at 2:52 PM, T?nde Szil?gyi
<a.tunde.szilagyi at gmail.com> wrote:
> Hi Matt,
>
> Many thanks. I went through the suggested routes (see attachment). I am
> certain that I am doing something wrong (but I do not understand what it
> might be), because I am getting similar error messages.
>
> Many thanks.
> Tunde
>
> On 12 November 2015 at 19:33, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Hi Tunde,
>>
>> I mistakenly thought you were working on the "release" branch, so I
>> expected the commands to run would be
>>
>>   git checkout release
>>   git pull
>>
>> If you were not working on the release branch, it can be created locally
>> with
>>
>>   git checkout -b release origin/release
>>   git pull
>>
>> It is possible to also directly get the patch from Gerrit, but not do
>> use the 'pull' line for this case.  Instead, use the 'checkout' line,
>> i.e.
>>
>>   git fetch http://review.source.kitware.com/ITK
>> refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054
>>
>> Note that "-b CMP0054" was added to give a branch name.
>>
>> But, the 4.8.2 archives were just created from the latest "release"
>> branch, so those can be tried too:
>>
>>   https://sourceforge.net/projects/itk/files/itk/4.8/
>>
>>
>> Thanks for testing and providing feedback.
>>
>> Matt
>>
>> On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
>> <a.tunde.szilagyi at gmail.com> wrote:
>> > Hi Matt,
>> >
>> > I have pulled the suggested patch, but I am having the error message
>> > attached. I would appreciate any feedback from anyone.
>> >
>> > Many thanks in advance.
>> >
>> > Best wishes,
>> > Tunde
>> >
>> > On 5 November 2015 at 21:04, Matt McCormick <matt.mccormick at kitware.com>
>> > wrote:
>> >>
>> >> Hi Tunde,
>> >>
>> >> These CMake warnings are addressed by this patch:
>> >>
>> >>   http://review.source.kitware.com/#/c/20154/1
>> >>
>> >> which I just backported to the "release" branch. Please 'git pull' to
>> >> fetch the changes.
>> >>
>> >> Please let the list know if there are any other issues.  According to
>> >> the dashboard, there are also some warnings to address:
>> >>
>> >>    https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
>> >>
>> >> Patches for these warnings would be welcome :-)
>> >>
>> >> Thanks,
>> >> Matt
>> >>
>> >> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
>> >> <a.tunde.szilagyi at gmail.com> wrote:
>> >> > Hi Matt,
>> >> >
>> >> > Thank you, this fixed some of the problems I was facing. Now I can
>> >> > build
>> >> > some packages except the ITKNumerics, ITKStatistics and ITKFEM. I
>> >> > have
>> >> > attached the error message that I received in CMAKE. There are no
>> >> > explanations in the MS VS 2015 during build.
>> >> >
>> >> > Many thanks in advance.
>> >> >
>> >> > Tunde
>> >> >
>> >> >
>> >> > On 5 November 2015 at 16:22, Matt McCormick
>> >> > <matt.mccormick at kitware.com>
>> >> > wrote:
>> >> >>
>> >> >> Hi Tunde,
>> >> >>
>> >> >> A few pointers:
>> >> >>
>> >> >> - Use ITK Git master [1], which has support for Visual Studio 2015
>> >> >> (support is not available in ITK 4.8.1).
>> >> >> - If wrapping is built, ITK Git master also builds much faster.
>> >> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
>> >> >> configuration to greatly improve the build time.
>> >> >>
>> >> >> HTH,
>> >> >> Matt
>> >> >>
>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>> >> >>
>> >> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
>> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>> >> >> > Dear Brad,
>> >> >> >
>> >> >> > Thank you for your feedback. I figured out that my error occurs
>> >> >> > during
>> >> >> > CMake
>> >> >> > Configuration. I have attached an error message that I receive.
>> >> >> > Files
>> >> >> > from
>> >> >> > the same family are throwing this error - all start with
>> >> >> > cmTC_XXXXX.exe
>> >> >> > (see
>> >> >> > attached Screen Shoot). If I ignore this and Build All in MS
>> >> >> > Visual
>> >> >> > Studio
>> >> >> > the Debug and Release is not populated (And there are no error
>> >> >> > messages
>> >> >> > either.). I would appreciate any insight into this.
>> >> >> >
>> >> >> > Many thanks.
>> >> >> > Tunde
>> >> >> >
>> >> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
>> >> >> > <blowekamp at mail.nih.gov>
>> >> >> > wrote:
>> >> >> >>
>> >> >> >> Hello,
>> >> >> >>
>> >> >> >> I don't think I have built ITK with the MS VS 12 2015 GUI. But I
>> >> >> >> do
>> >> >> >> have a
>> >> >> >> dashboard build with the compiler:
>> >> >> >>
>> >> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
>> >> >> >>
>> >> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual machine.
>> >> >> >>
>> >> >> >> Perhaps you could try building from the command line with cmake?
>> >> >> >>
>> >> >> >> cmake --build . --config Release
>> >> >> >>
>> >> >> >>
>> >> >> >>
>> >> >> >> HTH,
>> >> >> >> Brad
>> >> >> >>
>> >> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
>> >> >> >> <a.tunde.szilagyi at gmail.com>
>> >> >> >> wrote:
>> >> >> >>
>> >> >> >> Dear All,
>> >> >> >>
>> >> >> >> I would be interested what is the expected time to build all the
>> >> >> >> ITK
>> >> >> >> libraries for the first time in Microsoft Visual Studio 14 2015.
>> >> >> >> It
>> >> >> >> shows me
>> >> >> >> that there 492 projects to build. It has been running for more
>> >> >> >> then
>> >> >> >> 17h
>> >> >> >> on a
>> >> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error
>> >> >> >> message.
>> >> >> >> Perhaps
>> >> >> >> I misunderstood this process?
>> >> >> >>
>> >> >> >> Many thanks.
>> >> >> >>
>> >> >> >> Best wishes,
>> >> >> >> Tunde Szilagyi
>> >> >> >> _______________________________________________
>> >> >> >> Community mailing list
>> >> >> >> Community at itk.org
>> >> >> >> http://public.kitware.com/mailman/listinfo/community
>> >> >> >>
>> >> >> >>
>> >> >> >
>> >> >> >
>> >> >> >
>> >> >> > _______________________________________________
>> >> >> > Community mailing list
>> >> >> > Community at itk.org
>> >> >> > http://public.kitware.com/mailman/listinfo/community
>> >> >> >
>> >> >
>> >> >
>> >
>> >
>
>
>
>
> --
> --
> Tunde

From skalexander at gmail.com  Thu Nov 12 15:27:26 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Thu, 12 Nov 2015 20:27:26 +0000
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CAMeM8yYrCg1AVkXoPW=okOX5UdL73EX92V=MJiKRZ66kFktwfQ@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
 <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
 <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>
 <CALzTN-THQzM4cuG8kmJAtCtZuB3hpL6J6Y-iDsVmVbjGsF1k=w@mail.gmail.com>
 <CAMeM8yYrCg1AVkXoPW=okOX5UdL73EX92V=MJiKRZ66kFktwfQ@mail.gmail.com>
Message-ID: <CAJFNcCQjn-T-LWzsiRpsp7vFoK5nMEm9YOfvCNJ64U8pME=HAg@mail.gmail.com>

Matt, should that be a "git reset --merge" ?


On Thu, 12 Nov 2015 at 15:14 T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
wrote:

> Hi Matt,
>
> Many thanks. Unfortunately the suggested command did not solve the
> problem, see attachment.
>
> Many thanks.
> Tunde
>
> On 12 November 2015 at 21:05, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>
>> Hi Tunde,
>>
>> The prompt indicates the repository is an intermediate state
>> (MERGING), and git is not allowing the requested actions because it
>> does not want changes made in that intermediate state to get lost.
>>
>> To get out of the intermediate state, use
>>
>>   git reset --hard origin/master
>>
>> then try again.
>>
>> HTH,
>> Matt
>>
>> On Thu, Nov 12, 2015 at 2:52 PM, T?nde Szil?gyi
>> <a.tunde.szilagyi at gmail.com> wrote:
>> > Hi Matt,
>> >
>> > Many thanks. I went through the suggested routes (see attachment). I am
>> > certain that I am doing something wrong (but I do not understand what it
>> > might be), because I am getting similar error messages.
>> >
>> > Many thanks.
>> > Tunde
>> >
>> > On 12 November 2015 at 19:33, Matt McCormick <
>> matt.mccormick at kitware.com>
>> > wrote:
>> >>
>> >> Hi Tunde,
>> >>
>> >> I mistakenly thought you were working on the "release" branch, so I
>> >> expected the commands to run would be
>> >>
>> >>   git checkout release
>> >>   git pull
>> >>
>> >> If you were not working on the release branch, it can be created
>> locally
>> >> with
>> >>
>> >>   git checkout -b release origin/release
>> >>   git pull
>> >>
>> >> It is possible to also directly get the patch from Gerrit, but not do
>> >> use the 'pull' line for this case.  Instead, use the 'checkout' line,
>> >> i.e.
>> >>
>> >>   git fetch http://review.source.kitware.com/ITK
>> >> refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054
>> >>
>> >> Note that "-b CMP0054" was added to give a branch name.
>> >>
>> >> But, the 4.8.2 archives were just created from the latest "release"
>> >> branch, so those can be tried too:
>> >>
>> >>   https://sourceforge.net/projects/itk/files/itk/4.8/
>> >>
>> >>
>> >> Thanks for testing and providing feedback.
>> >>
>> >> Matt
>> >>
>> >> On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
>> >> <a.tunde.szilagyi at gmail.com> wrote:
>> >> > Hi Matt,
>> >> >
>> >> > I have pulled the suggested patch, but I am having the error message
>> >> > attached. I would appreciate any feedback from anyone.
>> >> >
>> >> > Many thanks in advance.
>> >> >
>> >> > Best wishes,
>> >> > Tunde
>> >> >
>> >> > On 5 November 2015 at 21:04, Matt McCormick <
>> matt.mccormick at kitware.com>
>> >> > wrote:
>> >> >>
>> >> >> Hi Tunde,
>> >> >>
>> >> >> These CMake warnings are addressed by this patch:
>> >> >>
>> >> >>   http://review.source.kitware.com/#/c/20154/1
>> >> >>
>> >> >> which I just backported to the "release" branch. Please 'git pull'
>> to
>> >> >> fetch the changes.
>> >> >>
>> >> >> Please let the list know if there are any other issues.  According
>> to
>> >> >> the dashboard, there are also some warnings to address:
>> >> >>
>> >> >>    https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
>> >> >>
>> >> >> Patches for these warnings would be welcome :-)
>> >> >>
>> >> >> Thanks,
>> >> >> Matt
>> >> >>
>> >> >> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
>> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>> >> >> > Hi Matt,
>> >> >> >
>> >> >> > Thank you, this fixed some of the problems I was facing. Now I can
>> >> >> > build
>> >> >> > some packages except the ITKNumerics, ITKStatistics and ITKFEM. I
>> >> >> > have
>> >> >> > attached the error message that I received in CMAKE. There are no
>> >> >> > explanations in the MS VS 2015 during build.
>> >> >> >
>> >> >> > Many thanks in advance.
>> >> >> >
>> >> >> > Tunde
>> >> >> >
>> >> >> >
>> >> >> > On 5 November 2015 at 16:22, Matt McCormick
>> >> >> > <matt.mccormick at kitware.com>
>> >> >> > wrote:
>> >> >> >>
>> >> >> >> Hi Tunde,
>> >> >> >>
>> >> >> >> A few pointers:
>> >> >> >>
>> >> >> >> - Use ITK Git master [1], which has support for Visual Studio
>> 2015
>> >> >> >> (support is not available in ITK 4.8.1).
>> >> >> >> - If wrapping is built, ITK Git master also builds much faster.
>> >> >> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
>> >> >> >> configuration to greatly improve the build time.
>> >> >> >>
>> >> >> >> HTH,
>> >> >> >> Matt
>> >> >> >>
>> >> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>> >> >> >>
>> >> >> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
>> >> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>> >> >> >> > Dear Brad,
>> >> >> >> >
>> >> >> >> > Thank you for your feedback. I figured out that my error occurs
>> >> >> >> > during
>> >> >> >> > CMake
>> >> >> >> > Configuration. I have attached an error message that I receive.
>> >> >> >> > Files
>> >> >> >> > from
>> >> >> >> > the same family are throwing this error - all start with
>> >> >> >> > cmTC_XXXXX.exe
>> >> >> >> > (see
>> >> >> >> > attached Screen Shoot). If I ignore this and Build All in MS
>> >> >> >> > Visual
>> >> >> >> > Studio
>> >> >> >> > the Debug and Release is not populated (And there are no error
>> >> >> >> > messages
>> >> >> >> > either.). I would appreciate any insight into this.
>> >> >> >> >
>> >> >> >> > Many thanks.
>> >> >> >> > Tunde
>> >> >> >> >
>> >> >> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
>> >> >> >> > <blowekamp at mail.nih.gov>
>> >> >> >> > wrote:
>> >> >> >> >>
>> >> >> >> >> Hello,
>> >> >> >> >>
>> >> >> >> >> I don't think I have built ITK with the MS VS 12 2015 GUI.
>> But I
>> >> >> >> >> do
>> >> >> >> >> have a
>> >> >> >> >> dashboard build with the compiler:
>> >> >> >> >>
>> >> >> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
>> >> >> >> >>
>> >> >> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual
>> machine.
>> >> >> >> >>
>> >> >> >> >> Perhaps you could try building from the command line with
>> cmake?
>> >> >> >> >>
>> >> >> >> >> cmake --build . --config Release
>> >> >> >> >>
>> >> >> >> >>
>> >> >> >> >>
>> >> >> >> >> HTH,
>> >> >> >> >> Brad
>> >> >> >> >>
>> >> >> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
>> >> >> >> >> <a.tunde.szilagyi at gmail.com>
>> >> >> >> >> wrote:
>> >> >> >> >>
>> >> >> >> >> Dear All,
>> >> >> >> >>
>> >> >> >> >> I would be interested what is the expected time to build all
>> the
>> >> >> >> >> ITK
>> >> >> >> >> libraries for the first time in Microsoft Visual Studio 14
>> 2015.
>> >> >> >> >> It
>> >> >> >> >> shows me
>> >> >> >> >> that there 492 projects to build. It has been running for more
>> >> >> >> >> then
>> >> >> >> >> 17h
>> >> >> >> >> on a
>> >> >> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error
>> >> >> >> >> message.
>> >> >> >> >> Perhaps
>> >> >> >> >> I misunderstood this process?
>> >> >> >> >>
>> >> >> >> >> Many thanks.
>> >> >> >> >>
>> >> >> >> >> Best wishes,
>> >> >> >> >> Tunde Szilagyi
>> >> >> >> >> _______________________________________________
>> >> >> >> >> Community mailing list
>> >> >> >> >> Community at itk.org
>> >> >> >> >> http://public.kitware.com/mailman/listinfo/community
>> >> >> >> >>
>> >> >> >> >>
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > _______________________________________________
>> >> >> >> > Community mailing list
>> >> >> >> > Community at itk.org
>> >> >> >> > http://public.kitware.com/mailman/listinfo/community
>> >> >> >> >
>> >> >> >
>> >> >> >
>> >> >
>> >> >
>> >
>> >
>> >
>> >
>> > --
>> > --
>> > Tunde
>>
>
>
>
> --
> --
> Tunde
>
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From a.tunde.szilagyi at gmail.com  Thu Nov 12 15:38:15 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Thu, 12 Nov 2015 21:38:15 +0100
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CAMeM8yYvb59L4ygUETt0rmw6mXt1XeRM+EkjGp9d=KEEd9BXPQ@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
 <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
 <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>
 <CALzTN-THQzM4cuG8kmJAtCtZuB3hpL6J6Y-iDsVmVbjGsF1k=w@mail.gmail.com>
 <CAMeM8yYrCg1AVkXoPW=okOX5UdL73EX92V=MJiKRZ66kFktwfQ@mail.gmail.com>
 <CAJFNcCQjn-T-LWzsiRpsp7vFoK5nMEm9YOfvCNJ64U8pME=HAg@mail.gmail.com>
 <CAMeM8yYvb59L4ygUETt0rmw6mXt1XeRM+EkjGp9d=KEEd9BXPQ@mail.gmail.com>
Message-ID: <CAMeM8yZxH2-4MS9v2HXF_hbSoV_DwUXrXpJxiz2+m+5k43s5Yg@mail.gmail.com>

Hi Matt,

It appears that the changes have been made successfully. Unfortunately,
CMake is still not happy. I have attached the output. I would appreciate
help from anyone. Many thanks.

Tunde

On 12 November 2015 at 21:32, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
wrote:

> Simon, many thanks that worked! I have attached the new set of feedback
> that I have received. I assume this is all fine..
>
> On 12 November 2015 at 21:27, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Matt, should that be a "git reset --merge" ?
>>
>>
>> On Thu, 12 Nov 2015 at 15:14 T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
>> wrote:
>>
>>> Hi Matt,
>>>
>>> Many thanks. Unfortunately the suggested command did not solve the
>>> problem, see attachment.
>>>
>>> Many thanks.
>>> Tunde
>>>
>>> On 12 November 2015 at 21:05, Matt McCormick <matt.mccormick at kitware.com
>>> > wrote:
>>>
>>>> Hi Tunde,
>>>>
>>>> The prompt indicates the repository is an intermediate state
>>>> (MERGING), and git is not allowing the requested actions because it
>>>> does not want changes made in that intermediate state to get lost.
>>>>
>>>> To get out of the intermediate state, use
>>>>
>>>>   git reset --hard origin/master
>>>>
>>>> then try again.
>>>>
>>>> HTH,
>>>> Matt
>>>>
>>>> On Thu, Nov 12, 2015 at 2:52 PM, T?nde Szil?gyi
>>>> <a.tunde.szilagyi at gmail.com> wrote:
>>>> > Hi Matt,
>>>> >
>>>> > Many thanks. I went through the suggested routes (see attachment). I
>>>> am
>>>> > certain that I am doing something wrong (but I do not understand what
>>>> it
>>>> > might be), because I am getting similar error messages.
>>>> >
>>>> > Many thanks.
>>>> > Tunde
>>>> >
>>>> > On 12 November 2015 at 19:33, Matt McCormick <
>>>> matt.mccormick at kitware.com>
>>>> > wrote:
>>>> >>
>>>> >> Hi Tunde,
>>>> >>
>>>> >> I mistakenly thought you were working on the "release" branch, so I
>>>> >> expected the commands to run would be
>>>> >>
>>>> >>   git checkout release
>>>> >>   git pull
>>>> >>
>>>> >> If you were not working on the release branch, it can be created
>>>> locally
>>>> >> with
>>>> >>
>>>> >>   git checkout -b release origin/release
>>>> >>   git pull
>>>> >>
>>>> >> It is possible to also directly get the patch from Gerrit, but not do
>>>> >> use the 'pull' line for this case.  Instead, use the 'checkout' line,
>>>> >> i.e.
>>>> >>
>>>> >>   git fetch http://review.source.kitware.com/ITK
>>>> >> refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054
>>>> >>
>>>> >> Note that "-b CMP0054" was added to give a branch name.
>>>> >>
>>>> >> But, the 4.8.2 archives were just created from the latest "release"
>>>> >> branch, so those can be tried too:
>>>> >>
>>>> >>   https://sourceforge.net/projects/itk/files/itk/4.8/
>>>> >>
>>>> >>
>>>> >> Thanks for testing and providing feedback.
>>>> >>
>>>> >> Matt
>>>> >>
>>>> >> On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
>>>> >> <a.tunde.szilagyi at gmail.com> wrote:
>>>> >> > Hi Matt,
>>>> >> >
>>>> >> > I have pulled the suggested patch, but I am having the error
>>>> message
>>>> >> > attached. I would appreciate any feedback from anyone.
>>>> >> >
>>>> >> > Many thanks in advance.
>>>> >> >
>>>> >> > Best wishes,
>>>> >> > Tunde
>>>> >> >
>>>> >> > On 5 November 2015 at 21:04, Matt McCormick <
>>>> matt.mccormick at kitware.com>
>>>> >> > wrote:
>>>> >> >>
>>>> >> >> Hi Tunde,
>>>> >> >>
>>>> >> >> These CMake warnings are addressed by this patch:
>>>> >> >>
>>>> >> >>   http://review.source.kitware.com/#/c/20154/1
>>>> >> >>
>>>> >> >> which I just backported to the "release" branch. Please 'git
>>>> pull' to
>>>> >> >> fetch the changes.
>>>> >> >>
>>>> >> >> Please let the list know if there are any other issues.
>>>> According to
>>>> >> >> the dashboard, there are also some warnings to address:
>>>> >> >>
>>>> >> >>
>>>> https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
>>>> >> >>
>>>> >> >> Patches for these warnings would be welcome :-)
>>>> >> >>
>>>> >> >> Thanks,
>>>> >> >> Matt
>>>> >> >>
>>>> >> >> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
>>>> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>>>> >> >> > Hi Matt,
>>>> >> >> >
>>>> >> >> > Thank you, this fixed some of the problems I was facing. Now I
>>>> can
>>>> >> >> > build
>>>> >> >> > some packages except the ITKNumerics, ITKStatistics and ITKFEM.
>>>> I
>>>> >> >> > have
>>>> >> >> > attached the error message that I received in CMAKE. There are
>>>> no
>>>> >> >> > explanations in the MS VS 2015 during build.
>>>> >> >> >
>>>> >> >> > Many thanks in advance.
>>>> >> >> >
>>>> >> >> > Tunde
>>>> >> >> >
>>>> >> >> >
>>>> >> >> > On 5 November 2015 at 16:22, Matt McCormick
>>>> >> >> > <matt.mccormick at kitware.com>
>>>> >> >> > wrote:
>>>> >> >> >>
>>>> >> >> >> Hi Tunde,
>>>> >> >> >>
>>>> >> >> >> A few pointers:
>>>> >> >> >>
>>>> >> >> >> - Use ITK Git master [1], which has support for Visual Studio
>>>> 2015
>>>> >> >> >> (support is not available in ITK 4.8.1).
>>>> >> >> >> - If wrapping is built, ITK Git master also builds much faster.
>>>> >> >> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
>>>> >> >> >> configuration to greatly improve the build time.
>>>> >> >> >>
>>>> >> >> >> HTH,
>>>> >> >> >> Matt
>>>> >> >> >>
>>>> >> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>> >> >> >>
>>>> >> >> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
>>>> >> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>>>> >> >> >> > Dear Brad,
>>>> >> >> >> >
>>>> >> >> >> > Thank you for your feedback. I figured out that my error
>>>> occurs
>>>> >> >> >> > during
>>>> >> >> >> > CMake
>>>> >> >> >> > Configuration. I have attached an error message that I
>>>> receive.
>>>> >> >> >> > Files
>>>> >> >> >> > from
>>>> >> >> >> > the same family are throwing this error - all start with
>>>> >> >> >> > cmTC_XXXXX.exe
>>>> >> >> >> > (see
>>>> >> >> >> > attached Screen Shoot). If I ignore this and Build All in MS
>>>> >> >> >> > Visual
>>>> >> >> >> > Studio
>>>> >> >> >> > the Debug and Release is not populated (And there are no
>>>> error
>>>> >> >> >> > messages
>>>> >> >> >> > either.). I would appreciate any insight into this.
>>>> >> >> >> >
>>>> >> >> >> > Many thanks.
>>>> >> >> >> > Tunde
>>>> >> >> >> >
>>>> >> >> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
>>>> >> >> >> > <blowekamp at mail.nih.gov>
>>>> >> >> >> > wrote:
>>>> >> >> >> >>
>>>> >> >> >> >> Hello,
>>>> >> >> >> >>
>>>> >> >> >> >> I don't think I have built ITK with the MS VS 12 2015 GUI.
>>>> But I
>>>> >> >> >> >> do
>>>> >> >> >> >> have a
>>>> >> >> >> >> dashboard build with the compiler:
>>>> >> >> >> >>
>>>> >> >> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
>>>> >> >> >> >>
>>>> >> >> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual
>>>> machine.
>>>> >> >> >> >>
>>>> >> >> >> >> Perhaps you could try building from the command line with
>>>> cmake?
>>>> >> >> >> >>
>>>> >> >> >> >> cmake --build . --config Release
>>>> >> >> >> >>
>>>> >> >> >> >>
>>>> >> >> >> >>
>>>> >> >> >> >> HTH,
>>>> >> >> >> >> Brad
>>>> >> >> >> >>
>>>> >> >> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
>>>> >> >> >> >> <a.tunde.szilagyi at gmail.com>
>>>> >> >> >> >> wrote:
>>>> >> >> >> >>
>>>> >> >> >> >> Dear All,
>>>> >> >> >> >>
>>>> >> >> >> >> I would be interested what is the expected time to build
>>>> all the
>>>> >> >> >> >> ITK
>>>> >> >> >> >> libraries for the first time in Microsoft Visual Studio 14
>>>> 2015.
>>>> >> >> >> >> It
>>>> >> >> >> >> shows me
>>>> >> >> >> >> that there 492 projects to build. It has been running for
>>>> more
>>>> >> >> >> >> then
>>>> >> >> >> >> 17h
>>>> >> >> >> >> on a
>>>> >> >> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error
>>>> >> >> >> >> message.
>>>> >> >> >> >> Perhaps
>>>> >> >> >> >> I misunderstood this process?
>>>> >> >> >> >>
>>>> >> >> >> >> Many thanks.
>>>> >> >> >> >>
>>>> >> >> >> >> Best wishes,
>>>> >> >> >> >> Tunde Szilagyi
>>>> >> >> >> >> _______________________________________________
>>>> >> >> >> >> Community mailing list
>>>> >> >> >> >> Community at itk.org
>>>> >> >> >> >> http://public.kitware.com/mailman/listinfo/community
>>>> >> >> >> >>
>>>> >> >> >> >>
>>>> >> >> >> >
>>>> >> >> >> >
>>>> >> >> >> >
>>>> >> >> >> > _______________________________________________
>>>> >> >> >> > Community mailing list
>>>> >> >> >> > Community at itk.org
>>>> >> >> >> > http://public.kitware.com/mailman/listinfo/community
>>>> >> >> >> >
>>>> >> >> >
>>>> >> >> >
>>>> >> >
>>>> >> >
>>>> >
>>>> >
>>>> >
>>>> >
>>>> > --
>>>> > --
>>>> > Tunde
>>>>
>>>
>>>
>>>
>>> --
>>> --
>>> Tunde
>>>
>>
>
>
> --
> --
> Tunde
>



-- 
--
Tunde
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From dzenanz at gmail.com  Thu Nov 12 15:45:53 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Thu, 12 Nov 2015 15:45:53 -0500
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CAMeM8yZxH2-4MS9v2HXF_hbSoV_DwUXrXpJxiz2+m+5k43s5Yg@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
 <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
 <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>
 <CALzTN-THQzM4cuG8kmJAtCtZuB3hpL6J6Y-iDsVmVbjGsF1k=w@mail.gmail.com>
 <CAMeM8yYrCg1AVkXoPW=okOX5UdL73EX92V=MJiKRZ66kFktwfQ@mail.gmail.com>
 <CAJFNcCQjn-T-LWzsiRpsp7vFoK5nMEm9YOfvCNJ64U8pME=HAg@mail.gmail.com>
 <CAMeM8yYvb59L4ygUETt0rmw6mXt1XeRM+EkjGp9d=KEEd9BXPQ@mail.gmail.com>
 <CAMeM8yZxH2-4MS9v2HXF_hbSoV_DwUXrXpJxiz2+m+5k43s5Yg@mail.gmail.com>
Message-ID: <CAPf2UMTkpGan7Ukja+VRokvmmUHaRVj-gQ-q-kDqzzMBd7-r3g@mail.gmail.com>

That CMake output only contains warnings. Go ahead and build it.

On Thu, Nov 12, 2015 at 3:38 PM, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
wrote:

> Hi Matt,
>
> It appears that the changes have been made successfully. Unfortunately,
> CMake is still not happy. I have attached the output. I would appreciate
> help from anyone. Many thanks.
>
> Tunde
>
> On 12 November 2015 at 21:32, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
> wrote:
>
>> Simon, many thanks that worked! I have attached the new set of feedback
>> that I have received. I assume this is all fine..
>>
>> On 12 November 2015 at 21:27, Simon Alexander <skalexander at gmail.com>
>> wrote:
>>
>>> Matt, should that be a "git reset --merge" ?
>>>
>>>
>>> On Thu, 12 Nov 2015 at 15:14 T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
>>> wrote:
>>>
>>>> Hi Matt,
>>>>
>>>> Many thanks. Unfortunately the suggested command did not solve the
>>>> problem, see attachment.
>>>>
>>>> Many thanks.
>>>> Tunde
>>>>
>>>> On 12 November 2015 at 21:05, Matt McCormick <
>>>> matt.mccormick at kitware.com> wrote:
>>>>
>>>>> Hi Tunde,
>>>>>
>>>>> The prompt indicates the repository is an intermediate state
>>>>> (MERGING), and git is not allowing the requested actions because it
>>>>> does not want changes made in that intermediate state to get lost.
>>>>>
>>>>> To get out of the intermediate state, use
>>>>>
>>>>>   git reset --hard origin/master
>>>>>
>>>>> then try again.
>>>>>
>>>>> HTH,
>>>>> Matt
>>>>>
>>>>> On Thu, Nov 12, 2015 at 2:52 PM, T?nde Szil?gyi
>>>>> <a.tunde.szilagyi at gmail.com> wrote:
>>>>> > Hi Matt,
>>>>> >
>>>>> > Many thanks. I went through the suggested routes (see attachment). I
>>>>> am
>>>>> > certain that I am doing something wrong (but I do not understand
>>>>> what it
>>>>> > might be), because I am getting similar error messages.
>>>>> >
>>>>> > Many thanks.
>>>>> > Tunde
>>>>> >
>>>>> > On 12 November 2015 at 19:33, Matt McCormick <
>>>>> matt.mccormick at kitware.com>
>>>>> > wrote:
>>>>> >>
>>>>> >> Hi Tunde,
>>>>> >>
>>>>> >> I mistakenly thought you were working on the "release" branch, so I
>>>>> >> expected the commands to run would be
>>>>> >>
>>>>> >>   git checkout release
>>>>> >>   git pull
>>>>> >>
>>>>> >> If you were not working on the release branch, it can be created
>>>>> locally
>>>>> >> with
>>>>> >>
>>>>> >>   git checkout -b release origin/release
>>>>> >>   git pull
>>>>> >>
>>>>> >> It is possible to also directly get the patch from Gerrit, but not
>>>>> do
>>>>> >> use the 'pull' line for this case.  Instead, use the 'checkout'
>>>>> line,
>>>>> >> i.e.
>>>>> >>
>>>>> >>   git fetch http://review.source.kitware.com/ITK
>>>>> >> refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054
>>>>> >>
>>>>> >> Note that "-b CMP0054" was added to give a branch name.
>>>>> >>
>>>>> >> But, the 4.8.2 archives were just created from the latest "release"
>>>>> >> branch, so those can be tried too:
>>>>> >>
>>>>> >>   https://sourceforge.net/projects/itk/files/itk/4.8/
>>>>> >>
>>>>> >>
>>>>> >> Thanks for testing and providing feedback.
>>>>> >>
>>>>> >> Matt
>>>>> >>
>>>>> >> On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
>>>>> >> <a.tunde.szilagyi at gmail.com> wrote:
>>>>> >> > Hi Matt,
>>>>> >> >
>>>>> >> > I have pulled the suggested patch, but I am having the error
>>>>> message
>>>>> >> > attached. I would appreciate any feedback from anyone.
>>>>> >> >
>>>>> >> > Many thanks in advance.
>>>>> >> >
>>>>> >> > Best wishes,
>>>>> >> > Tunde
>>>>> >> >
>>>>> >> > On 5 November 2015 at 21:04, Matt McCormick <
>>>>> matt.mccormick at kitware.com>
>>>>> >> > wrote:
>>>>> >> >>
>>>>> >> >> Hi Tunde,
>>>>> >> >>
>>>>> >> >> These CMake warnings are addressed by this patch:
>>>>> >> >>
>>>>> >> >>   http://review.source.kitware.com/#/c/20154/1
>>>>> >> >>
>>>>> >> >> which I just backported to the "release" branch. Please 'git
>>>>> pull' to
>>>>> >> >> fetch the changes.
>>>>> >> >>
>>>>> >> >> Please let the list know if there are any other issues.
>>>>> According to
>>>>> >> >> the dashboard, there are also some warnings to address:
>>>>> >> >>
>>>>> >> >>
>>>>> https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
>>>>> >> >>
>>>>> >> >> Patches for these warnings would be welcome :-)
>>>>> >> >>
>>>>> >> >> Thanks,
>>>>> >> >> Matt
>>>>> >> >>
>>>>> >> >> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
>>>>> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>>>>> >> >> > Hi Matt,
>>>>> >> >> >
>>>>> >> >> > Thank you, this fixed some of the problems I was facing. Now I
>>>>> can
>>>>> >> >> > build
>>>>> >> >> > some packages except the ITKNumerics, ITKStatistics and
>>>>> ITKFEM. I
>>>>> >> >> > have
>>>>> >> >> > attached the error message that I received in CMAKE. There are
>>>>> no
>>>>> >> >> > explanations in the MS VS 2015 during build.
>>>>> >> >> >
>>>>> >> >> > Many thanks in advance.
>>>>> >> >> >
>>>>> >> >> > Tunde
>>>>> >> >> >
>>>>> >> >> >
>>>>> >> >> > On 5 November 2015 at 16:22, Matt McCormick
>>>>> >> >> > <matt.mccormick at kitware.com>
>>>>> >> >> > wrote:
>>>>> >> >> >>
>>>>> >> >> >> Hi Tunde,
>>>>> >> >> >>
>>>>> >> >> >> A few pointers:
>>>>> >> >> >>
>>>>> >> >> >> - Use ITK Git master [1], which has support for Visual Studio
>>>>> 2015
>>>>> >> >> >> (support is not available in ITK 4.8.1).
>>>>> >> >> >> - If wrapping is built, ITK Git master also builds much
>>>>> faster.
>>>>> >> >> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
>>>>> >> >> >> configuration to greatly improve the build time.
>>>>> >> >> >>
>>>>> >> >> >> HTH,
>>>>> >> >> >> Matt
>>>>> >> >> >>
>>>>> >> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>> >> >> >>
>>>>> >> >> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
>>>>> >> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>>>>> >> >> >> > Dear Brad,
>>>>> >> >> >> >
>>>>> >> >> >> > Thank you for your feedback. I figured out that my error
>>>>> occurs
>>>>> >> >> >> > during
>>>>> >> >> >> > CMake
>>>>> >> >> >> > Configuration. I have attached an error message that I
>>>>> receive.
>>>>> >> >> >> > Files
>>>>> >> >> >> > from
>>>>> >> >> >> > the same family are throwing this error - all start with
>>>>> >> >> >> > cmTC_XXXXX.exe
>>>>> >> >> >> > (see
>>>>> >> >> >> > attached Screen Shoot). If I ignore this and Build All in MS
>>>>> >> >> >> > Visual
>>>>> >> >> >> > Studio
>>>>> >> >> >> > the Debug and Release is not populated (And there are no
>>>>> error
>>>>> >> >> >> > messages
>>>>> >> >> >> > either.). I would appreciate any insight into this.
>>>>> >> >> >> >
>>>>> >> >> >> > Many thanks.
>>>>> >> >> >> > Tunde
>>>>> >> >> >> >
>>>>> >> >> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
>>>>> >> >> >> > <blowekamp at mail.nih.gov>
>>>>> >> >> >> > wrote:
>>>>> >> >> >> >>
>>>>> >> >> >> >> Hello,
>>>>> >> >> >> >>
>>>>> >> >> >> >> I don't think I have built ITK with the MS VS 12 2015 GUI.
>>>>> But I
>>>>> >> >> >> >> do
>>>>> >> >> >> >> have a
>>>>> >> >> >> >> dashboard build with the compiler:
>>>>> >> >> >> >>
>>>>> >> >> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
>>>>> >> >> >> >>
>>>>> >> >> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual
>>>>> machine.
>>>>> >> >> >> >>
>>>>> >> >> >> >> Perhaps you could try building from the command line with
>>>>> cmake?
>>>>> >> >> >> >>
>>>>> >> >> >> >> cmake --build . --config Release
>>>>> >> >> >> >>
>>>>> >> >> >> >>
>>>>> >> >> >> >>
>>>>> >> >> >> >> HTH,
>>>>> >> >> >> >> Brad
>>>>> >> >> >> >>
>>>>> >> >> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
>>>>> >> >> >> >> <a.tunde.szilagyi at gmail.com>
>>>>> >> >> >> >> wrote:
>>>>> >> >> >> >>
>>>>> >> >> >> >> Dear All,
>>>>> >> >> >> >>
>>>>> >> >> >> >> I would be interested what is the expected time to build
>>>>> all the
>>>>> >> >> >> >> ITK
>>>>> >> >> >> >> libraries for the first time in Microsoft Visual Studio 14
>>>>> 2015.
>>>>> >> >> >> >> It
>>>>> >> >> >> >> shows me
>>>>> >> >> >> >> that there 492 projects to build. It has been running for
>>>>> more
>>>>> >> >> >> >> then
>>>>> >> >> >> >> 17h
>>>>> >> >> >> >> on a
>>>>> >> >> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error
>>>>> >> >> >> >> message.
>>>>> >> >> >> >> Perhaps
>>>>> >> >> >> >> I misunderstood this process?
>>>>> >> >> >> >>
>>>>> >> >> >> >> Many thanks.
>>>>> >> >> >> >>
>>>>> >> >> >> >> Best wishes,
>>>>> >> >> >> >> Tunde Szilagyi
>>>>> >> >> >> >> _______________________________________________
>>>>> >> >> >> >> Community mailing list
>>>>> >> >> >> >> Community at itk.org
>>>>> >> >> >> >> http://public.kitware.com/mailman/listinfo/community
>>>>> >> >> >> >>
>>>>> >> >> >> >>
>>>>> >> >> >> >
>>>>> >> >> >> >
>>>>> >> >> >> >
>>>>> >> >> >> > _______________________________________________
>>>>> >> >> >> > Community mailing list
>>>>> >> >> >> > Community at itk.org
>>>>> >> >> >> > http://public.kitware.com/mailman/listinfo/community
>>>>> >> >> >> >
>>>>> >> >> >
>>>>> >> >> >
>>>>> >> >
>>>>> >> >
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> > --
>>>>> > --
>>>>> > Tunde
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> --
>>>> Tunde
>>>>
>>>
>>
>>
>> --
>> --
>> Tunde
>>
>
>
>
> --
> --
> Tunde
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
-------------- next part --------------
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From matt.mccormick at kitware.com  Thu Nov 12 15:53:37 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Thu, 12 Nov 2015 15:53:37 -0500
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CAMeM8yYrCg1AVkXoPW=okOX5UdL73EX92V=MJiKRZ66kFktwfQ@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
 <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
 <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>
 <CALzTN-THQzM4cuG8kmJAtCtZuB3hpL6J6Y-iDsVmVbjGsF1k=w@mail.gmail.com>
 <CAMeM8yYrCg1AVkXoPW=okOX5UdL73EX92V=MJiKRZ66kFktwfQ@mail.gmail.com>
Message-ID: <CALzTN-SCp-WeNx=62KEFyCX0kQtrm0Z2qDYwAmkOCRS2QfAP5w@mail.gmail.com>

It did not work because there is a space between '--' and 'hard', but
it should be '--hard'.

HTH,
Matt

On Thu, Nov 12, 2015 at 3:14 PM, T?nde Szil?gyi
<a.tunde.szilagyi at gmail.com> wrote:
> Hi Matt,
>
> Many thanks. Unfortunately the suggested command did not solve the problem,
> see attachment.
>
> Many thanks.
> Tunde
>
> On 12 November 2015 at 21:05, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Hi Tunde,
>>
>> The prompt indicates the repository is an intermediate state
>> (MERGING), and git is not allowing the requested actions because it
>> does not want changes made in that intermediate state to get lost.
>>
>> To get out of the intermediate state, use
>>
>>   git reset --hard origin/master
>>
>> then try again.
>>
>> HTH,
>> Matt
>>
>> On Thu, Nov 12, 2015 at 2:52 PM, T?nde Szil?gyi
>> <a.tunde.szilagyi at gmail.com> wrote:
>> > Hi Matt,
>> >
>> > Many thanks. I went through the suggested routes (see attachment). I am
>> > certain that I am doing something wrong (but I do not understand what it
>> > might be), because I am getting similar error messages.
>> >
>> > Many thanks.
>> > Tunde
>> >
>> > On 12 November 2015 at 19:33, Matt McCormick
>> > <matt.mccormick at kitware.com>
>> > wrote:
>> >>
>> >> Hi Tunde,
>> >>
>> >> I mistakenly thought you were working on the "release" branch, so I
>> >> expected the commands to run would be
>> >>
>> >>   git checkout release
>> >>   git pull
>> >>
>> >> If you were not working on the release branch, it can be created
>> >> locally
>> >> with
>> >>
>> >>   git checkout -b release origin/release
>> >>   git pull
>> >>
>> >> It is possible to also directly get the patch from Gerrit, but not do
>> >> use the 'pull' line for this case.  Instead, use the 'checkout' line,
>> >> i.e.
>> >>
>> >>   git fetch http://review.source.kitware.com/ITK
>> >> refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054
>> >>
>> >> Note that "-b CMP0054" was added to give a branch name.
>> >>
>> >> But, the 4.8.2 archives were just created from the latest "release"
>> >> branch, so those can be tried too:
>> >>
>> >>   https://sourceforge.net/projects/itk/files/itk/4.8/
>> >>
>> >>
>> >> Thanks for testing and providing feedback.
>> >>
>> >> Matt
>> >>
>> >> On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
>> >> <a.tunde.szilagyi at gmail.com> wrote:
>> >> > Hi Matt,
>> >> >
>> >> > I have pulled the suggested patch, but I am having the error message
>> >> > attached. I would appreciate any feedback from anyone.
>> >> >
>> >> > Many thanks in advance.
>> >> >
>> >> > Best wishes,
>> >> > Tunde
>> >> >
>> >> > On 5 November 2015 at 21:04, Matt McCormick
>> >> > <matt.mccormick at kitware.com>
>> >> > wrote:
>> >> >>
>> >> >> Hi Tunde,
>> >> >>
>> >> >> These CMake warnings are addressed by this patch:
>> >> >>
>> >> >>   http://review.source.kitware.com/#/c/20154/1
>> >> >>
>> >> >> which I just backported to the "release" branch. Please 'git pull'
>> >> >> to
>> >> >> fetch the changes.
>> >> >>
>> >> >> Please let the list know if there are any other issues.  According
>> >> >> to
>> >> >> the dashboard, there are also some warnings to address:
>> >> >>
>> >> >>    https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
>> >> >>
>> >> >> Patches for these warnings would be welcome :-)
>> >> >>
>> >> >> Thanks,
>> >> >> Matt
>> >> >>
>> >> >> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
>> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>> >> >> > Hi Matt,
>> >> >> >
>> >> >> > Thank you, this fixed some of the problems I was facing. Now I can
>> >> >> > build
>> >> >> > some packages except the ITKNumerics, ITKStatistics and ITKFEM. I
>> >> >> > have
>> >> >> > attached the error message that I received in CMAKE. There are no
>> >> >> > explanations in the MS VS 2015 during build.
>> >> >> >
>> >> >> > Many thanks in advance.
>> >> >> >
>> >> >> > Tunde
>> >> >> >
>> >> >> >
>> >> >> > On 5 November 2015 at 16:22, Matt McCormick
>> >> >> > <matt.mccormick at kitware.com>
>> >> >> > wrote:
>> >> >> >>
>> >> >> >> Hi Tunde,
>> >> >> >>
>> >> >> >> A few pointers:
>> >> >> >>
>> >> >> >> - Use ITK Git master [1], which has support for Visual Studio
>> >> >> >> 2015
>> >> >> >> (support is not available in ITK 4.8.1).
>> >> >> >> - If wrapping is built, ITK Git master also builds much faster.
>> >> >> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
>> >> >> >> configuration to greatly improve the build time.
>> >> >> >>
>> >> >> >> HTH,
>> >> >> >> Matt
>> >> >> >>
>> >> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>> >> >> >>
>> >> >> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
>> >> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>> >> >> >> > Dear Brad,
>> >> >> >> >
>> >> >> >> > Thank you for your feedback. I figured out that my error occurs
>> >> >> >> > during
>> >> >> >> > CMake
>> >> >> >> > Configuration. I have attached an error message that I receive.
>> >> >> >> > Files
>> >> >> >> > from
>> >> >> >> > the same family are throwing this error - all start with
>> >> >> >> > cmTC_XXXXX.exe
>> >> >> >> > (see
>> >> >> >> > attached Screen Shoot). If I ignore this and Build All in MS
>> >> >> >> > Visual
>> >> >> >> > Studio
>> >> >> >> > the Debug and Release is not populated (And there are no error
>> >> >> >> > messages
>> >> >> >> > either.). I would appreciate any insight into this.
>> >> >> >> >
>> >> >> >> > Many thanks.
>> >> >> >> > Tunde
>> >> >> >> >
>> >> >> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
>> >> >> >> > <blowekamp at mail.nih.gov>
>> >> >> >> > wrote:
>> >> >> >> >>
>> >> >> >> >> Hello,
>> >> >> >> >>
>> >> >> >> >> I don't think I have built ITK with the MS VS 12 2015 GUI. But
>> >> >> >> >> I
>> >> >> >> >> do
>> >> >> >> >> have a
>> >> >> >> >> dashboard build with the compiler:
>> >> >> >> >>
>> >> >> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
>> >> >> >> >>
>> >> >> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual
>> >> >> >> >> machine.
>> >> >> >> >>
>> >> >> >> >> Perhaps you could try building from the command line with
>> >> >> >> >> cmake?
>> >> >> >> >>
>> >> >> >> >> cmake --build . --config Release
>> >> >> >> >>
>> >> >> >> >>
>> >> >> >> >>
>> >> >> >> >> HTH,
>> >> >> >> >> Brad
>> >> >> >> >>
>> >> >> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
>> >> >> >> >> <a.tunde.szilagyi at gmail.com>
>> >> >> >> >> wrote:
>> >> >> >> >>
>> >> >> >> >> Dear All,
>> >> >> >> >>
>> >> >> >> >> I would be interested what is the expected time to build all
>> >> >> >> >> the
>> >> >> >> >> ITK
>> >> >> >> >> libraries for the first time in Microsoft Visual Studio 14
>> >> >> >> >> 2015.
>> >> >> >> >> It
>> >> >> >> >> shows me
>> >> >> >> >> that there 492 projects to build. It has been running for more
>> >> >> >> >> then
>> >> >> >> >> 17h
>> >> >> >> >> on a
>> >> >> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error
>> >> >> >> >> message.
>> >> >> >> >> Perhaps
>> >> >> >> >> I misunderstood this process?
>> >> >> >> >>
>> >> >> >> >> Many thanks.
>> >> >> >> >>
>> >> >> >> >> Best wishes,
>> >> >> >> >> Tunde Szilagyi
>> >> >> >> >> _______________________________________________
>> >> >> >> >> Community mailing list
>> >> >> >> >> Community at itk.org
>> >> >> >> >> http://public.kitware.com/mailman/listinfo/community
>> >> >> >> >>
>> >> >> >> >>
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > _______________________________________________
>> >> >> >> > Community mailing list
>> >> >> >> > Community at itk.org
>> >> >> >> > http://public.kitware.com/mailman/listinfo/community
>> >> >> >> >
>> >> >> >
>> >> >> >
>> >> >
>> >> >
>> >
>> >
>> >
>> >
>> > --
>> > --
>> > Tunde
>
>
>
>
> --
> --
> Tunde

From matt.mccormick at kitware.com  Thu Nov 12 15:54:18 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Thu, 12 Nov 2015 15:54:18 -0500
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CAMeM8yZxH2-4MS9v2HXF_hbSoV_DwUXrXpJxiz2+m+5k43s5Yg@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
 <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
 <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>
 <CALzTN-THQzM4cuG8kmJAtCtZuB3hpL6J6Y-iDsVmVbjGsF1k=w@mail.gmail.com>
 <CAMeM8yYrCg1AVkXoPW=okOX5UdL73EX92V=MJiKRZ66kFktwfQ@mail.gmail.com>
 <CAJFNcCQjn-T-LWzsiRpsp7vFoK5nMEm9YOfvCNJ64U8pME=HAg@mail.gmail.com>
 <CAMeM8yYvb59L4ygUETt0rmw6mXt1XeRM+EkjGp9d=KEEd9BXPQ@mail.gmail.com>
 <CAMeM8yZxH2-4MS9v2HXF_hbSoV_DwUXrXpJxiz2+m+5k43s5Yg@mail.gmail.com>
Message-ID: <CALzTN-R0L1dw0ZbD5_AaOeDnE3DtXNAs8uvBN6ABLQbH0+-YyA@mail.gmail.com>

Hi Tunde,

Those look like paths from ITKv3.  Is ITKv4 being used?

HTH,
Matt

On Thu, Nov 12, 2015 at 3:38 PM, T?nde Szil?gyi
<a.tunde.szilagyi at gmail.com> wrote:
> Hi Matt,
>
> It appears that the changes have been made successfully. Unfortunately,
> CMake is still not happy. I have attached the output. I would appreciate
> help from anyone. Many thanks.
>
> Tunde
>
> On 12 November 2015 at 21:32, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
> wrote:
>>
>> Simon, many thanks that worked! I have attached the new set of feedback
>> that I have received. I assume this is all fine..
>>
>> On 12 November 2015 at 21:27, Simon Alexander <skalexander at gmail.com>
>> wrote:
>>>
>>> Matt, should that be a "git reset --merge" ?
>>>
>>>
>>> On Thu, 12 Nov 2015 at 15:14 T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
>>> wrote:
>>>>
>>>> Hi Matt,
>>>>
>>>> Many thanks. Unfortunately the suggested command did not solve the
>>>> problem, see attachment.
>>>>
>>>> Many thanks.
>>>> Tunde
>>>>
>>>> On 12 November 2015 at 21:05, Matt McCormick
>>>> <matt.mccormick at kitware.com> wrote:
>>>>>
>>>>> Hi Tunde,
>>>>>
>>>>> The prompt indicates the repository is an intermediate state
>>>>> (MERGING), and git is not allowing the requested actions because it
>>>>> does not want changes made in that intermediate state to get lost.
>>>>>
>>>>> To get out of the intermediate state, use
>>>>>
>>>>>   git reset --hard origin/master
>>>>>
>>>>> then try again.
>>>>>
>>>>> HTH,
>>>>> Matt
>>>>>
>>>>> On Thu, Nov 12, 2015 at 2:52 PM, T?nde Szil?gyi
>>>>> <a.tunde.szilagyi at gmail.com> wrote:
>>>>> > Hi Matt,
>>>>> >
>>>>> > Many thanks. I went through the suggested routes (see attachment). I
>>>>> > am
>>>>> > certain that I am doing something wrong (but I do not understand what
>>>>> > it
>>>>> > might be), because I am getting similar error messages.
>>>>> >
>>>>> > Many thanks.
>>>>> > Tunde
>>>>> >
>>>>> > On 12 November 2015 at 19:33, Matt McCormick
>>>>> > <matt.mccormick at kitware.com>
>>>>> > wrote:
>>>>> >>
>>>>> >> Hi Tunde,
>>>>> >>
>>>>> >> I mistakenly thought you were working on the "release" branch, so I
>>>>> >> expected the commands to run would be
>>>>> >>
>>>>> >>   git checkout release
>>>>> >>   git pull
>>>>> >>
>>>>> >> If you were not working on the release branch, it can be created
>>>>> >> locally
>>>>> >> with
>>>>> >>
>>>>> >>   git checkout -b release origin/release
>>>>> >>   git pull
>>>>> >>
>>>>> >> It is possible to also directly get the patch from Gerrit, but not
>>>>> >> do
>>>>> >> use the 'pull' line for this case.  Instead, use the 'checkout'
>>>>> >> line,
>>>>> >> i.e.
>>>>> >>
>>>>> >>   git fetch http://review.source.kitware.com/ITK
>>>>> >> refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054
>>>>> >>
>>>>> >> Note that "-b CMP0054" was added to give a branch name.
>>>>> >>
>>>>> >> But, the 4.8.2 archives were just created from the latest "release"
>>>>> >> branch, so those can be tried too:
>>>>> >>
>>>>> >>   https://sourceforge.net/projects/itk/files/itk/4.8/
>>>>> >>
>>>>> >>
>>>>> >> Thanks for testing and providing feedback.
>>>>> >>
>>>>> >> Matt
>>>>> >>
>>>>> >> On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
>>>>> >> <a.tunde.szilagyi at gmail.com> wrote:
>>>>> >> > Hi Matt,
>>>>> >> >
>>>>> >> > I have pulled the suggested patch, but I am having the error
>>>>> >> > message
>>>>> >> > attached. I would appreciate any feedback from anyone.
>>>>> >> >
>>>>> >> > Many thanks in advance.
>>>>> >> >
>>>>> >> > Best wishes,
>>>>> >> > Tunde
>>>>> >> >
>>>>> >> > On 5 November 2015 at 21:04, Matt McCormick
>>>>> >> > <matt.mccormick at kitware.com>
>>>>> >> > wrote:
>>>>> >> >>
>>>>> >> >> Hi Tunde,
>>>>> >> >>
>>>>> >> >> These CMake warnings are addressed by this patch:
>>>>> >> >>
>>>>> >> >>   http://review.source.kitware.com/#/c/20154/1
>>>>> >> >>
>>>>> >> >> which I just backported to the "release" branch. Please 'git
>>>>> >> >> pull' to
>>>>> >> >> fetch the changes.
>>>>> >> >>
>>>>> >> >> Please let the list know if there are any other issues.
>>>>> >> >> According to
>>>>> >> >> the dashboard, there are also some warnings to address:
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
>>>>> >> >>
>>>>> >> >> Patches for these warnings would be welcome :-)
>>>>> >> >>
>>>>> >> >> Thanks,
>>>>> >> >> Matt
>>>>> >> >>
>>>>> >> >> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
>>>>> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>>>>> >> >> > Hi Matt,
>>>>> >> >> >
>>>>> >> >> > Thank you, this fixed some of the problems I was facing. Now I
>>>>> >> >> > can
>>>>> >> >> > build
>>>>> >> >> > some packages except the ITKNumerics, ITKStatistics and ITKFEM.
>>>>> >> >> > I
>>>>> >> >> > have
>>>>> >> >> > attached the error message that I received in CMAKE. There are
>>>>> >> >> > no
>>>>> >> >> > explanations in the MS VS 2015 during build.
>>>>> >> >> >
>>>>> >> >> > Many thanks in advance.
>>>>> >> >> >
>>>>> >> >> > Tunde
>>>>> >> >> >
>>>>> >> >> >
>>>>> >> >> > On 5 November 2015 at 16:22, Matt McCormick
>>>>> >> >> > <matt.mccormick at kitware.com>
>>>>> >> >> > wrote:
>>>>> >> >> >>
>>>>> >> >> >> Hi Tunde,
>>>>> >> >> >>
>>>>> >> >> >> A few pointers:
>>>>> >> >> >>
>>>>> >> >> >> - Use ITK Git master [1], which has support for Visual Studio
>>>>> >> >> >> 2015
>>>>> >> >> >> (support is not available in ITK 4.8.1).
>>>>> >> >> >> - If wrapping is built, ITK Git master also builds much
>>>>> >> >> >> faster.
>>>>> >> >> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
>>>>> >> >> >> configuration to greatly improve the build time.
>>>>> >> >> >>
>>>>> >> >> >> HTH,
>>>>> >> >> >> Matt
>>>>> >> >> >>
>>>>> >> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>> >> >> >>
>>>>> >> >> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
>>>>> >> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>>>>> >> >> >> > Dear Brad,
>>>>> >> >> >> >
>>>>> >> >> >> > Thank you for your feedback. I figured out that my error
>>>>> >> >> >> > occurs
>>>>> >> >> >> > during
>>>>> >> >> >> > CMake
>>>>> >> >> >> > Configuration. I have attached an error message that I
>>>>> >> >> >> > receive.
>>>>> >> >> >> > Files
>>>>> >> >> >> > from
>>>>> >> >> >> > the same family are throwing this error - all start with
>>>>> >> >> >> > cmTC_XXXXX.exe
>>>>> >> >> >> > (see
>>>>> >> >> >> > attached Screen Shoot). If I ignore this and Build All in MS
>>>>> >> >> >> > Visual
>>>>> >> >> >> > Studio
>>>>> >> >> >> > the Debug and Release is not populated (And there are no
>>>>> >> >> >> > error
>>>>> >> >> >> > messages
>>>>> >> >> >> > either.). I would appreciate any insight into this.
>>>>> >> >> >> >
>>>>> >> >> >> > Many thanks.
>>>>> >> >> >> > Tunde
>>>>> >> >> >> >
>>>>> >> >> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
>>>>> >> >> >> > <blowekamp at mail.nih.gov>
>>>>> >> >> >> > wrote:
>>>>> >> >> >> >>
>>>>> >> >> >> >> Hello,
>>>>> >> >> >> >>
>>>>> >> >> >> >> I don't think I have built ITK with the MS VS 12 2015 GUI.
>>>>> >> >> >> >> But I
>>>>> >> >> >> >> do
>>>>> >> >> >> >> have a
>>>>> >> >> >> >> dashboard build with the compiler:
>>>>> >> >> >> >>
>>>>> >> >> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
>>>>> >> >> >> >>
>>>>> >> >> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual
>>>>> >> >> >> >> machine.
>>>>> >> >> >> >>
>>>>> >> >> >> >> Perhaps you could try building from the command line with
>>>>> >> >> >> >> cmake?
>>>>> >> >> >> >>
>>>>> >> >> >> >> cmake --build . --config Release
>>>>> >> >> >> >>
>>>>> >> >> >> >>
>>>>> >> >> >> >>
>>>>> >> >> >> >> HTH,
>>>>> >> >> >> >> Brad
>>>>> >> >> >> >>
>>>>> >> >> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
>>>>> >> >> >> >> <a.tunde.szilagyi at gmail.com>
>>>>> >> >> >> >> wrote:
>>>>> >> >> >> >>
>>>>> >> >> >> >> Dear All,
>>>>> >> >> >> >>
>>>>> >> >> >> >> I would be interested what is the expected time to build
>>>>> >> >> >> >> all the
>>>>> >> >> >> >> ITK
>>>>> >> >> >> >> libraries for the first time in Microsoft Visual Studio 14
>>>>> >> >> >> >> 2015.
>>>>> >> >> >> >> It
>>>>> >> >> >> >> shows me
>>>>> >> >> >> >> that there 492 projects to build. It has been running for
>>>>> >> >> >> >> more
>>>>> >> >> >> >> then
>>>>> >> >> >> >> 17h
>>>>> >> >> >> >> on a
>>>>> >> >> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error
>>>>> >> >> >> >> message.
>>>>> >> >> >> >> Perhaps
>>>>> >> >> >> >> I misunderstood this process?
>>>>> >> >> >> >>
>>>>> >> >> >> >> Many thanks.
>>>>> >> >> >> >>
>>>>> >> >> >> >> Best wishes,
>>>>> >> >> >> >> Tunde Szilagyi
>>>>> >> >> >> >> _______________________________________________
>>>>> >> >> >> >> Community mailing list
>>>>> >> >> >> >> Community at itk.org
>>>>> >> >> >> >> http://public.kitware.com/mailman/listinfo/community
>>>>> >> >> >> >>
>>>>> >> >> >> >>
>>>>> >> >> >> >
>>>>> >> >> >> >
>>>>> >> >> >> >
>>>>> >> >> >> > _______________________________________________
>>>>> >> >> >> > Community mailing list
>>>>> >> >> >> > Community at itk.org
>>>>> >> >> >> > http://public.kitware.com/mailman/listinfo/community
>>>>> >> >> >> >
>>>>> >> >> >
>>>>> >> >> >
>>>>> >> >
>>>>> >> >
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> > --
>>>>> > --
>>>>> > Tunde
>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> --
>>>> Tunde
>>
>>
>>
>>
>> --
>> --
>> Tunde
>
>
>
>
> --
> --
> Tunde

From a.tunde.szilagyi at gmail.com  Thu Nov 12 15:57:42 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Thu, 12 Nov 2015 21:57:42 +0100
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CALzTN-SCp-WeNx=62KEFyCX0kQtrm0Z2qDYwAmkOCRS2QfAP5w@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
 <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
 <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>
 <CALzTN-THQzM4cuG8kmJAtCtZuB3hpL6J6Y-iDsVmVbjGsF1k=w@mail.gmail.com>
 <CAMeM8yYrCg1AVkXoPW=okOX5UdL73EX92V=MJiKRZ66kFktwfQ@mail.gmail.com>
 <CALzTN-SCp-WeNx=62KEFyCX0kQtrm0Z2qDYwAmkOCRS2QfAP5w@mail.gmail.com>
Message-ID: <CAMeM8yZbaRMpPggyTabjUhFk2or+U449EFY=HnBVPs+cft+reQ@mail.gmail.com>

You are right. That is why I have tried both ways. See the earlier
attachment. Many thanks.

Tunde

On 12 November 2015 at 21:53, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> It did not work because there is a space between '--' and 'hard', but
> it should be '--hard'.
>
> HTH,
> Matt
>
> On Thu, Nov 12, 2015 at 3:14 PM, T?nde Szil?gyi
> <a.tunde.szilagyi at gmail.com> wrote:
> > Hi Matt,
> >
> > Many thanks. Unfortunately the suggested command did not solve the
> problem,
> > see attachment.
> >
> > Many thanks.
> > Tunde
> >
> > On 12 November 2015 at 21:05, Matt McCormick <matt.mccormick at kitware.com
> >
> > wrote:
> >>
> >> Hi Tunde,
> >>
> >> The prompt indicates the repository is an intermediate state
> >> (MERGING), and git is not allowing the requested actions because it
> >> does not want changes made in that intermediate state to get lost.
> >>
> >> To get out of the intermediate state, use
> >>
> >>   git reset --hard origin/master
> >>
> >> then try again.
> >>
> >> HTH,
> >> Matt
> >>
> >> On Thu, Nov 12, 2015 at 2:52 PM, T?nde Szil?gyi
> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> > Hi Matt,
> >> >
> >> > Many thanks. I went through the suggested routes (see attachment). I
> am
> >> > certain that I am doing something wrong (but I do not understand what
> it
> >> > might be), because I am getting similar error messages.
> >> >
> >> > Many thanks.
> >> > Tunde
> >> >
> >> > On 12 November 2015 at 19:33, Matt McCormick
> >> > <matt.mccormick at kitware.com>
> >> > wrote:
> >> >>
> >> >> Hi Tunde,
> >> >>
> >> >> I mistakenly thought you were working on the "release" branch, so I
> >> >> expected the commands to run would be
> >> >>
> >> >>   git checkout release
> >> >>   git pull
> >> >>
> >> >> If you were not working on the release branch, it can be created
> >> >> locally
> >> >> with
> >> >>
> >> >>   git checkout -b release origin/release
> >> >>   git pull
> >> >>
> >> >> It is possible to also directly get the patch from Gerrit, but not do
> >> >> use the 'pull' line for this case.  Instead, use the 'checkout' line,
> >> >> i.e.
> >> >>
> >> >>   git fetch http://review.source.kitware.com/ITK
> >> >> refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054
> >> >>
> >> >> Note that "-b CMP0054" was added to give a branch name.
> >> >>
> >> >> But, the 4.8.2 archives were just created from the latest "release"
> >> >> branch, so those can be tried too:
> >> >>
> >> >>   https://sourceforge.net/projects/itk/files/itk/4.8/
> >> >>
> >> >>
> >> >> Thanks for testing and providing feedback.
> >> >>
> >> >> Matt
> >> >>
> >> >> On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
> >> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> >> > Hi Matt,
> >> >> >
> >> >> > I have pulled the suggested patch, but I am having the error
> message
> >> >> > attached. I would appreciate any feedback from anyone.
> >> >> >
> >> >> > Many thanks in advance.
> >> >> >
> >> >> > Best wishes,
> >> >> > Tunde
> >> >> >
> >> >> > On 5 November 2015 at 21:04, Matt McCormick
> >> >> > <matt.mccormick at kitware.com>
> >> >> > wrote:
> >> >> >>
> >> >> >> Hi Tunde,
> >> >> >>
> >> >> >> These CMake warnings are addressed by this patch:
> >> >> >>
> >> >> >>   http://review.source.kitware.com/#/c/20154/1
> >> >> >>
> >> >> >> which I just backported to the "release" branch. Please 'git pull'
> >> >> >> to
> >> >> >> fetch the changes.
> >> >> >>
> >> >> >> Please let the list know if there are any other issues.  According
> >> >> >> to
> >> >> >> the dashboard, there are also some warnings to address:
> >> >> >>
> >> >> >>
> https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
> >> >> >>
> >> >> >> Patches for these warnings would be welcome :-)
> >> >> >>
> >> >> >> Thanks,
> >> >> >> Matt
> >> >> >>
> >> >> >> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
> >> >> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> >> >> > Hi Matt,
> >> >> >> >
> >> >> >> > Thank you, this fixed some of the problems I was facing. Now I
> can
> >> >> >> > build
> >> >> >> > some packages except the ITKNumerics, ITKStatistics and ITKFEM.
> I
> >> >> >> > have
> >> >> >> > attached the error message that I received in CMAKE. There are
> no
> >> >> >> > explanations in the MS VS 2015 during build.
> >> >> >> >
> >> >> >> > Many thanks in advance.
> >> >> >> >
> >> >> >> > Tunde
> >> >> >> >
> >> >> >> >
> >> >> >> > On 5 November 2015 at 16:22, Matt McCormick
> >> >> >> > <matt.mccormick at kitware.com>
> >> >> >> > wrote:
> >> >> >> >>
> >> >> >> >> Hi Tunde,
> >> >> >> >>
> >> >> >> >> A few pointers:
> >> >> >> >>
> >> >> >> >> - Use ITK Git master [1], which has support for Visual Studio
> >> >> >> >> 2015
> >> >> >> >> (support is not available in ITK 4.8.1).
> >> >> >> >> - If wrapping is built, ITK Git master also builds much faster.
> >> >> >> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
> >> >> >> >> configuration to greatly improve the build time.
> >> >> >> >>
> >> >> >> >> HTH,
> >> >> >> >> Matt
> >> >> >> >>
> >> >> >> >> [1] http://www.itk.org/Wiki/ITK/Git
> >> >> >> >>
> >> >> >> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
> >> >> >> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> >> >> >> > Dear Brad,
> >> >> >> >> >
> >> >> >> >> > Thank you for your feedback. I figured out that my error
> occurs
> >> >> >> >> > during
> >> >> >> >> > CMake
> >> >> >> >> > Configuration. I have attached an error message that I
> receive.
> >> >> >> >> > Files
> >> >> >> >> > from
> >> >> >> >> > the same family are throwing this error - all start with
> >> >> >> >> > cmTC_XXXXX.exe
> >> >> >> >> > (see
> >> >> >> >> > attached Screen Shoot). If I ignore this and Build All in MS
> >> >> >> >> > Visual
> >> >> >> >> > Studio
> >> >> >> >> > the Debug and Release is not populated (And there are no
> error
> >> >> >> >> > messages
> >> >> >> >> > either.). I would appreciate any insight into this.
> >> >> >> >> >
> >> >> >> >> > Many thanks.
> >> >> >> >> > Tunde
> >> >> >> >> >
> >> >> >> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
> >> >> >> >> > <blowekamp at mail.nih.gov>
> >> >> >> >> > wrote:
> >> >> >> >> >>
> >> >> >> >> >> Hello,
> >> >> >> >> >>
> >> >> >> >> >> I don't think I have built ITK with the MS VS 12 2015 GUI.
> But
> >> >> >> >> >> I
> >> >> >> >> >> do
> >> >> >> >> >> have a
> >> >> >> >> >> dashboard build with the compiler:
> >> >> >> >> >>
> >> >> >> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
> >> >> >> >> >>
> >> >> >> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual
> >> >> >> >> >> machine.
> >> >> >> >> >>
> >> >> >> >> >> Perhaps you could try building from the command line with
> >> >> >> >> >> cmake?
> >> >> >> >> >>
> >> >> >> >> >> cmake --build . --config Release
> >> >> >> >> >>
> >> >> >> >> >>
> >> >> >> >> >>
> >> >> >> >> >> HTH,
> >> >> >> >> >> Brad
> >> >> >> >> >>
> >> >> >> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
> >> >> >> >> >> <a.tunde.szilagyi at gmail.com>
> >> >> >> >> >> wrote:
> >> >> >> >> >>
> >> >> >> >> >> Dear All,
> >> >> >> >> >>
> >> >> >> >> >> I would be interested what is the expected time to build all
> >> >> >> >> >> the
> >> >> >> >> >> ITK
> >> >> >> >> >> libraries for the first time in Microsoft Visual Studio 14
> >> >> >> >> >> 2015.
> >> >> >> >> >> It
> >> >> >> >> >> shows me
> >> >> >> >> >> that there 492 projects to build. It has been running for
> more
> >> >> >> >> >> then
> >> >> >> >> >> 17h
> >> >> >> >> >> on a
> >> >> >> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error
> >> >> >> >> >> message.
> >> >> >> >> >> Perhaps
> >> >> >> >> >> I misunderstood this process?
> >> >> >> >> >>
> >> >> >> >> >> Many thanks.
> >> >> >> >> >>
> >> >> >> >> >> Best wishes,
> >> >> >> >> >> Tunde Szilagyi
> >> >> >> >> >> _______________________________________________
> >> >> >> >> >> Community mailing list
> >> >> >> >> >> Community at itk.org
> >> >> >> >> >> http://public.kitware.com/mailman/listinfo/community
> >> >> >> >> >>
> >> >> >> >> >>
> >> >> >> >> >
> >> >> >> >> >
> >> >> >> >> >
> >> >> >> >> > _______________________________________________
> >> >> >> >> > Community mailing list
> >> >> >> >> > Community at itk.org
> >> >> >> >> > http://public.kitware.com/mailman/listinfo/community
> >> >> >> >> >
> >> >> >> >
> >> >> >> >
> >> >> >
> >> >> >
> >> >
> >> >
> >> >
> >> >
> >> > --
> >> > --
> >> > Tunde
> >
> >
> >
> >
> > --
> > --
> > Tunde
>



-- 
--
Tunde
-------------- next part --------------
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From a.tunde.szilagyi at gmail.com  Thu Nov 12 16:00:20 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Thu, 12 Nov 2015 22:00:20 +0100
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CALzTN-R0L1dw0ZbD5_AaOeDnE3DtXNAs8uvBN6ABLQbH0+-YyA@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
 <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
 <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>
 <CALzTN-THQzM4cuG8kmJAtCtZuB3hpL6J6Y-iDsVmVbjGsF1k=w@mail.gmail.com>
 <CAMeM8yYrCg1AVkXoPW=okOX5UdL73EX92V=MJiKRZ66kFktwfQ@mail.gmail.com>
 <CAJFNcCQjn-T-LWzsiRpsp7vFoK5nMEm9YOfvCNJ64U8pME=HAg@mail.gmail.com>
 <CAMeM8yYvb59L4ygUETt0rmw6mXt1XeRM+EkjGp9d=KEEd9BXPQ@mail.gmail.com>
 <CAMeM8yZxH2-4MS9v2HXF_hbSoV_DwUXrXpJxiz2+m+5k43s5Yg@mail.gmail.com>
 <CALzTN-R0L1dw0ZbD5_AaOeDnE3DtXNAs8uvBN6ABLQbH0+-YyA@mail.gmail.com>
Message-ID: <CAMeM8yaRubxK0xWGXRDJoSV2SRVX0eJTxUirNvXWqhcOSKOMNw@mail.gmail.com>

Hi Matt,

I am compiling ITK for the first time. I have not used it before. I have
attached the output when I have tried to build it.

Many thanks.
Tunde

ps. Perhaps I just erase everything and start from zero...

On 12 November 2015 at 21:54, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Tunde,
>
> Those look like paths from ITKv3.  Is ITKv4 being used?
>
> HTH,
> Matt
>
> On Thu, Nov 12, 2015 at 3:38 PM, T?nde Szil?gyi
> <a.tunde.szilagyi at gmail.com> wrote:
> > Hi Matt,
> >
> > It appears that the changes have been made successfully. Unfortunately,
> > CMake is still not happy. I have attached the output. I would appreciate
> > help from anyone. Many thanks.
> >
> > Tunde
> >
> > On 12 November 2015 at 21:32, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com
> >
> > wrote:
> >>
> >> Simon, many thanks that worked! I have attached the new set of feedback
> >> that I have received. I assume this is all fine..
> >>
> >> On 12 November 2015 at 21:27, Simon Alexander <skalexander at gmail.com>
> >> wrote:
> >>>
> >>> Matt, should that be a "git reset --merge" ?
> >>>
> >>>
> >>> On Thu, 12 Nov 2015 at 15:14 T?nde Szil?gyi <
> a.tunde.szilagyi at gmail.com>
> >>> wrote:
> >>>>
> >>>> Hi Matt,
> >>>>
> >>>> Many thanks. Unfortunately the suggested command did not solve the
> >>>> problem, see attachment.
> >>>>
> >>>> Many thanks.
> >>>> Tunde
> >>>>
> >>>> On 12 November 2015 at 21:05, Matt McCormick
> >>>> <matt.mccormick at kitware.com> wrote:
> >>>>>
> >>>>> Hi Tunde,
> >>>>>
> >>>>> The prompt indicates the repository is an intermediate state
> >>>>> (MERGING), and git is not allowing the requested actions because it
> >>>>> does not want changes made in that intermediate state to get lost.
> >>>>>
> >>>>> To get out of the intermediate state, use
> >>>>>
> >>>>>   git reset --hard origin/master
> >>>>>
> >>>>> then try again.
> >>>>>
> >>>>> HTH,
> >>>>> Matt
> >>>>>
> >>>>> On Thu, Nov 12, 2015 at 2:52 PM, T?nde Szil?gyi
> >>>>> <a.tunde.szilagyi at gmail.com> wrote:
> >>>>> > Hi Matt,
> >>>>> >
> >>>>> > Many thanks. I went through the suggested routes (see attachment).
> I
> >>>>> > am
> >>>>> > certain that I am doing something wrong (but I do not understand
> what
> >>>>> > it
> >>>>> > might be), because I am getting similar error messages.
> >>>>> >
> >>>>> > Many thanks.
> >>>>> > Tunde
> >>>>> >
> >>>>> > On 12 November 2015 at 19:33, Matt McCormick
> >>>>> > <matt.mccormick at kitware.com>
> >>>>> > wrote:
> >>>>> >>
> >>>>> >> Hi Tunde,
> >>>>> >>
> >>>>> >> I mistakenly thought you were working on the "release" branch, so
> I
> >>>>> >> expected the commands to run would be
> >>>>> >>
> >>>>> >>   git checkout release
> >>>>> >>   git pull
> >>>>> >>
> >>>>> >> If you were not working on the release branch, it can be created
> >>>>> >> locally
> >>>>> >> with
> >>>>> >>
> >>>>> >>   git checkout -b release origin/release
> >>>>> >>   git pull
> >>>>> >>
> >>>>> >> It is possible to also directly get the patch from Gerrit, but not
> >>>>> >> do
> >>>>> >> use the 'pull' line for this case.  Instead, use the 'checkout'
> >>>>> >> line,
> >>>>> >> i.e.
> >>>>> >>
> >>>>> >>   git fetch http://review.source.kitware.com/ITK
> >>>>> >> refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054
> >>>>> >>
> >>>>> >> Note that "-b CMP0054" was added to give a branch name.
> >>>>> >>
> >>>>> >> But, the 4.8.2 archives were just created from the latest
> "release"
> >>>>> >> branch, so those can be tried too:
> >>>>> >>
> >>>>> >>   https://sourceforge.net/projects/itk/files/itk/4.8/
> >>>>> >>
> >>>>> >>
> >>>>> >> Thanks for testing and providing feedback.
> >>>>> >>
> >>>>> >> Matt
> >>>>> >>
> >>>>> >> On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
> >>>>> >> <a.tunde.szilagyi at gmail.com> wrote:
> >>>>> >> > Hi Matt,
> >>>>> >> >
> >>>>> >> > I have pulled the suggested patch, but I am having the error
> >>>>> >> > message
> >>>>> >> > attached. I would appreciate any feedback from anyone.
> >>>>> >> >
> >>>>> >> > Many thanks in advance.
> >>>>> >> >
> >>>>> >> > Best wishes,
> >>>>> >> > Tunde
> >>>>> >> >
> >>>>> >> > On 5 November 2015 at 21:04, Matt McCormick
> >>>>> >> > <matt.mccormick at kitware.com>
> >>>>> >> > wrote:
> >>>>> >> >>
> >>>>> >> >> Hi Tunde,
> >>>>> >> >>
> >>>>> >> >> These CMake warnings are addressed by this patch:
> >>>>> >> >>
> >>>>> >> >>   http://review.source.kitware.com/#/c/20154/1
> >>>>> >> >>
> >>>>> >> >> which I just backported to the "release" branch. Please 'git
> >>>>> >> >> pull' to
> >>>>> >> >> fetch the changes.
> >>>>> >> >>
> >>>>> >> >> Please let the list know if there are any other issues.
> >>>>> >> >> According to
> >>>>> >> >> the dashboard, there are also some warnings to address:
> >>>>> >> >>
> >>>>> >> >>
> >>>>> >> >>
> https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
> >>>>> >> >>
> >>>>> >> >> Patches for these warnings would be welcome :-)
> >>>>> >> >>
> >>>>> >> >> Thanks,
> >>>>> >> >> Matt
> >>>>> >> >>
> >>>>> >> >> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
> >>>>> >> >> <a.tunde.szilagyi at gmail.com> wrote:
> >>>>> >> >> > Hi Matt,
> >>>>> >> >> >
> >>>>> >> >> > Thank you, this fixed some of the problems I was facing. Now
> I
> >>>>> >> >> > can
> >>>>> >> >> > build
> >>>>> >> >> > some packages except the ITKNumerics, ITKStatistics and
> ITKFEM.
> >>>>> >> >> > I
> >>>>> >> >> > have
> >>>>> >> >> > attached the error message that I received in CMAKE. There
> are
> >>>>> >> >> > no
> >>>>> >> >> > explanations in the MS VS 2015 during build.
> >>>>> >> >> >
> >>>>> >> >> > Many thanks in advance.
> >>>>> >> >> >
> >>>>> >> >> > Tunde
> >>>>> >> >> >
> >>>>> >> >> >
> >>>>> >> >> > On 5 November 2015 at 16:22, Matt McCormick
> >>>>> >> >> > <matt.mccormick at kitware.com>
> >>>>> >> >> > wrote:
> >>>>> >> >> >>
> >>>>> >> >> >> Hi Tunde,
> >>>>> >> >> >>
> >>>>> >> >> >> A few pointers:
> >>>>> >> >> >>
> >>>>> >> >> >> - Use ITK Git master [1], which has support for Visual
> Studio
> >>>>> >> >> >> 2015
> >>>>> >> >> >> (support is not available in ITK 4.8.1).
> >>>>> >> >> >> - If wrapping is built, ITK Git master also builds much
> >>>>> >> >> >> faster.
> >>>>> >> >> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
> >>>>> >> >> >> configuration to greatly improve the build time.
> >>>>> >> >> >>
> >>>>> >> >> >> HTH,
> >>>>> >> >> >> Matt
> >>>>> >> >> >>
> >>>>> >> >> >> [1] http://www.itk.org/Wiki/ITK/Git
> >>>>> >> >> >>
> >>>>> >> >> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
> >>>>> >> >> >> <a.tunde.szilagyi at gmail.com> wrote:
> >>>>> >> >> >> > Dear Brad,
> >>>>> >> >> >> >
> >>>>> >> >> >> > Thank you for your feedback. I figured out that my error
> >>>>> >> >> >> > occurs
> >>>>> >> >> >> > during
> >>>>> >> >> >> > CMake
> >>>>> >> >> >> > Configuration. I have attached an error message that I
> >>>>> >> >> >> > receive.
> >>>>> >> >> >> > Files
> >>>>> >> >> >> > from
> >>>>> >> >> >> > the same family are throwing this error - all start with
> >>>>> >> >> >> > cmTC_XXXXX.exe
> >>>>> >> >> >> > (see
> >>>>> >> >> >> > attached Screen Shoot). If I ignore this and Build All in
> MS
> >>>>> >> >> >> > Visual
> >>>>> >> >> >> > Studio
> >>>>> >> >> >> > the Debug and Release is not populated (And there are no
> >>>>> >> >> >> > error
> >>>>> >> >> >> > messages
> >>>>> >> >> >> > either.). I would appreciate any insight into this.
> >>>>> >> >> >> >
> >>>>> >> >> >> > Many thanks.
> >>>>> >> >> >> > Tunde
> >>>>> >> >> >> >
> >>>>> >> >> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
> >>>>> >> >> >> > <blowekamp at mail.nih.gov>
> >>>>> >> >> >> > wrote:
> >>>>> >> >> >> >>
> >>>>> >> >> >> >> Hello,
> >>>>> >> >> >> >>
> >>>>> >> >> >> >> I don't think I have built ITK with the MS VS 12 2015
> GUI.
> >>>>> >> >> >> >> But I
> >>>>> >> >> >> >> do
> >>>>> >> >> >> >> have a
> >>>>> >> >> >> >> dashboard build with the compiler:
> >>>>> >> >> >> >>
> >>>>> >> >> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
> >>>>> >> >> >> >>
> >>>>> >> >> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual
> >>>>> >> >> >> >> machine.
> >>>>> >> >> >> >>
> >>>>> >> >> >> >> Perhaps you could try building from the command line with
> >>>>> >> >> >> >> cmake?
> >>>>> >> >> >> >>
> >>>>> >> >> >> >> cmake --build . --config Release
> >>>>> >> >> >> >>
> >>>>> >> >> >> >>
> >>>>> >> >> >> >>
> >>>>> >> >> >> >> HTH,
> >>>>> >> >> >> >> Brad
> >>>>> >> >> >> >>
> >>>>> >> >> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
> >>>>> >> >> >> >> <a.tunde.szilagyi at gmail.com>
> >>>>> >> >> >> >> wrote:
> >>>>> >> >> >> >>
> >>>>> >> >> >> >> Dear All,
> >>>>> >> >> >> >>
> >>>>> >> >> >> >> I would be interested what is the expected time to build
> >>>>> >> >> >> >> all the
> >>>>> >> >> >> >> ITK
> >>>>> >> >> >> >> libraries for the first time in Microsoft Visual Studio
> 14
> >>>>> >> >> >> >> 2015.
> >>>>> >> >> >> >> It
> >>>>> >> >> >> >> shows me
> >>>>> >> >> >> >> that there 492 projects to build. It has been running for
> >>>>> >> >> >> >> more
> >>>>> >> >> >> >> then
> >>>>> >> >> >> >> 17h
> >>>>> >> >> >> >> on a
> >>>>> >> >> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without
> error
> >>>>> >> >> >> >> message.
> >>>>> >> >> >> >> Perhaps
> >>>>> >> >> >> >> I misunderstood this process?
> >>>>> >> >> >> >>
> >>>>> >> >> >> >> Many thanks.
> >>>>> >> >> >> >>
> >>>>> >> >> >> >> Best wishes,
> >>>>> >> >> >> >> Tunde Szilagyi
> >>>>> >> >> >> >> _______________________________________________
> >>>>> >> >> >> >> Community mailing list
> >>>>> >> >> >> >> Community at itk.org
> >>>>> >> >> >> >> http://public.kitware.com/mailman/listinfo/community
> >>>>> >> >> >> >>
> >>>>> >> >> >> >>
> >>>>> >> >> >> >
> >>>>> >> >> >> >
> >>>>> >> >> >> >
> >>>>> >> >> >> > _______________________________________________
> >>>>> >> >> >> > Community mailing list
> >>>>> >> >> >> > Community at itk.org
> >>>>> >> >> >> > http://public.kitware.com/mailman/listinfo/community
> >>>>> >> >> >> >
> >>>>> >> >> >
> >>>>> >> >> >
> >>>>> >> >
> >>>>> >> >
> >>>>> >
> >>>>> >
> >>>>> >
> >>>>> >
> >>>>> > --
> >>>>> > --
> >>>>> > Tunde
> >>>>
> >>>>
> >>>>
> >>>>
> >>>> --
> >>>> --
> >>>> Tunde
> >>
> >>
> >>
> >>
> >> --
> >> --
> >> Tunde
> >
> >
> >
> >
> > --
> > --
> > Tunde
>



-- 
--
Tunde
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From matt.mccormick at kitware.com  Thu Nov 12 16:05:50 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Thu, 12 Nov 2015 16:05:50 -0500
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CAMeM8yaRubxK0xWGXRDJoSV2SRVX0eJTxUirNvXWqhcOSKOMNw@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
 <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
 <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>
 <CALzTN-THQzM4cuG8kmJAtCtZuB3hpL6J6Y-iDsVmVbjGsF1k=w@mail.gmail.com>
 <CAMeM8yYrCg1AVkXoPW=okOX5UdL73EX92V=MJiKRZ66kFktwfQ@mail.gmail.com>
 <CAJFNcCQjn-T-LWzsiRpsp7vFoK5nMEm9YOfvCNJ64U8pME=HAg@mail.gmail.com>
 <CAMeM8yYvb59L4ygUETt0rmw6mXt1XeRM+EkjGp9d=KEEd9BXPQ@mail.gmail.com>
 <CAMeM8yZxH2-4MS9v2HXF_hbSoV_DwUXrXpJxiz2+m+5k43s5Yg@mail.gmail.com>
 <CALzTN-R0L1dw0ZbD5_AaOeDnE3DtXNAs8uvBN6ABLQbH0+-YyA@mail.gmail.com>
 <CAMeM8yaRubxK0xWGXRDJoSV2SRVX0eJTxUirNvXWqhcOSKOMNw@mail.gmail.com>
Message-ID: <CALzTN-SgfTGGQrA1POXT+R2kNOWTowMXqYZUOgE3hT07DuVZTA@mail.gmail.com>

Hi Tunde,

Yes, start from a clean source tree and especially a clean build tree
should help.  The ITK Software Guide has some guidance on getting
started:

  http://itk.org/ITKSoftwareGuide/html/Book1/ITKSoftwareGuide-Book1ch2.html#x27-170002

HTH,
Matt

On Thu, Nov 12, 2015 at 4:00 PM, T?nde Szil?gyi
<a.tunde.szilagyi at gmail.com> wrote:
> Hi Matt,
>
> I am compiling ITK for the first time. I have not used it before. I have
> attached the output when I have tried to build it.
>
> Many thanks.
> Tunde
>
> ps. Perhaps I just erase everything and start from zero...
>
> On 12 November 2015 at 21:54, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Hi Tunde,
>>
>> Those look like paths from ITKv3.  Is ITKv4 being used?
>>
>> HTH,
>> Matt
>>
>> On Thu, Nov 12, 2015 at 3:38 PM, T?nde Szil?gyi
>> <a.tunde.szilagyi at gmail.com> wrote:
>> > Hi Matt,
>> >
>> > It appears that the changes have been made successfully. Unfortunately,
>> > CMake is still not happy. I have attached the output. I would appreciate
>> > help from anyone. Many thanks.
>> >
>> > Tunde
>> >
>> > On 12 November 2015 at 21:32, T?nde Szil?gyi
>> > <a.tunde.szilagyi at gmail.com>
>> > wrote:
>> >>
>> >> Simon, many thanks that worked! I have attached the new set of feedback
>> >> that I have received. I assume this is all fine..
>> >>
>> >> On 12 November 2015 at 21:27, Simon Alexander <skalexander at gmail.com>
>> >> wrote:
>> >>>
>> >>> Matt, should that be a "git reset --merge" ?
>> >>>
>> >>>
>> >>> On Thu, 12 Nov 2015 at 15:14 T?nde Szil?gyi
>> >>> <a.tunde.szilagyi at gmail.com>
>> >>> wrote:
>> >>>>
>> >>>> Hi Matt,
>> >>>>
>> >>>> Many thanks. Unfortunately the suggested command did not solve the
>> >>>> problem, see attachment.
>> >>>>
>> >>>> Many thanks.
>> >>>> Tunde
>> >>>>
>> >>>> On 12 November 2015 at 21:05, Matt McCormick
>> >>>> <matt.mccormick at kitware.com> wrote:
>> >>>>>
>> >>>>> Hi Tunde,
>> >>>>>
>> >>>>> The prompt indicates the repository is an intermediate state
>> >>>>> (MERGING), and git is not allowing the requested actions because it
>> >>>>> does not want changes made in that intermediate state to get lost.
>> >>>>>
>> >>>>> To get out of the intermediate state, use
>> >>>>>
>> >>>>>   git reset --hard origin/master
>> >>>>>
>> >>>>> then try again.
>> >>>>>
>> >>>>> HTH,
>> >>>>> Matt
>> >>>>>
>> >>>>> On Thu, Nov 12, 2015 at 2:52 PM, T?nde Szil?gyi
>> >>>>> <a.tunde.szilagyi at gmail.com> wrote:
>> >>>>> > Hi Matt,
>> >>>>> >
>> >>>>> > Many thanks. I went through the suggested routes (see attachment).
>> >>>>> > I
>> >>>>> > am
>> >>>>> > certain that I am doing something wrong (but I do not understand
>> >>>>> > what
>> >>>>> > it
>> >>>>> > might be), because I am getting similar error messages.
>> >>>>> >
>> >>>>> > Many thanks.
>> >>>>> > Tunde
>> >>>>> >
>> >>>>> > On 12 November 2015 at 19:33, Matt McCormick
>> >>>>> > <matt.mccormick at kitware.com>
>> >>>>> > wrote:
>> >>>>> >>
>> >>>>> >> Hi Tunde,
>> >>>>> >>
>> >>>>> >> I mistakenly thought you were working on the "release" branch, so
>> >>>>> >> I
>> >>>>> >> expected the commands to run would be
>> >>>>> >>
>> >>>>> >>   git checkout release
>> >>>>> >>   git pull
>> >>>>> >>
>> >>>>> >> If you were not working on the release branch, it can be created
>> >>>>> >> locally
>> >>>>> >> with
>> >>>>> >>
>> >>>>> >>   git checkout -b release origin/release
>> >>>>> >>   git pull
>> >>>>> >>
>> >>>>> >> It is possible to also directly get the patch from Gerrit, but
>> >>>>> >> not
>> >>>>> >> do
>> >>>>> >> use the 'pull' line for this case.  Instead, use the 'checkout'
>> >>>>> >> line,
>> >>>>> >> i.e.
>> >>>>> >>
>> >>>>> >>   git fetch http://review.source.kitware.com/ITK
>> >>>>> >> refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054
>> >>>>> >>
>> >>>>> >> Note that "-b CMP0054" was added to give a branch name.
>> >>>>> >>
>> >>>>> >> But, the 4.8.2 archives were just created from the latest
>> >>>>> >> "release"
>> >>>>> >> branch, so those can be tried too:
>> >>>>> >>
>> >>>>> >>   https://sourceforge.net/projects/itk/files/itk/4.8/
>> >>>>> >>
>> >>>>> >>
>> >>>>> >> Thanks for testing and providing feedback.
>> >>>>> >>
>> >>>>> >> Matt
>> >>>>> >>
>> >>>>> >> On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
>> >>>>> >> <a.tunde.szilagyi at gmail.com> wrote:
>> >>>>> >> > Hi Matt,
>> >>>>> >> >
>> >>>>> >> > I have pulled the suggested patch, but I am having the error
>> >>>>> >> > message
>> >>>>> >> > attached. I would appreciate any feedback from anyone.
>> >>>>> >> >
>> >>>>> >> > Many thanks in advance.
>> >>>>> >> >
>> >>>>> >> > Best wishes,
>> >>>>> >> > Tunde
>> >>>>> >> >
>> >>>>> >> > On 5 November 2015 at 21:04, Matt McCormick
>> >>>>> >> > <matt.mccormick at kitware.com>
>> >>>>> >> > wrote:
>> >>>>> >> >>
>> >>>>> >> >> Hi Tunde,
>> >>>>> >> >>
>> >>>>> >> >> These CMake warnings are addressed by this patch:
>> >>>>> >> >>
>> >>>>> >> >>   http://review.source.kitware.com/#/c/20154/1
>> >>>>> >> >>
>> >>>>> >> >> which I just backported to the "release" branch. Please 'git
>> >>>>> >> >> pull' to
>> >>>>> >> >> fetch the changes.
>> >>>>> >> >>
>> >>>>> >> >> Please let the list know if there are any other issues.
>> >>>>> >> >> According to
>> >>>>> >> >> the dashboard, there are also some warnings to address:
>> >>>>> >> >>
>> >>>>> >> >>
>> >>>>> >> >>
>> >>>>> >> >> https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
>> >>>>> >> >>
>> >>>>> >> >> Patches for these warnings would be welcome :-)
>> >>>>> >> >>
>> >>>>> >> >> Thanks,
>> >>>>> >> >> Matt
>> >>>>> >> >>
>> >>>>> >> >> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
>> >>>>> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>> >>>>> >> >> > Hi Matt,
>> >>>>> >> >> >
>> >>>>> >> >> > Thank you, this fixed some of the problems I was facing. Now
>> >>>>> >> >> > I
>> >>>>> >> >> > can
>> >>>>> >> >> > build
>> >>>>> >> >> > some packages except the ITKNumerics, ITKStatistics and
>> >>>>> >> >> > ITKFEM.
>> >>>>> >> >> > I
>> >>>>> >> >> > have
>> >>>>> >> >> > attached the error message that I received in CMAKE. There
>> >>>>> >> >> > are
>> >>>>> >> >> > no
>> >>>>> >> >> > explanations in the MS VS 2015 during build.
>> >>>>> >> >> >
>> >>>>> >> >> > Many thanks in advance.
>> >>>>> >> >> >
>> >>>>> >> >> > Tunde
>> >>>>> >> >> >
>> >>>>> >> >> >
>> >>>>> >> >> > On 5 November 2015 at 16:22, Matt McCormick
>> >>>>> >> >> > <matt.mccormick at kitware.com>
>> >>>>> >> >> > wrote:
>> >>>>> >> >> >>
>> >>>>> >> >> >> Hi Tunde,
>> >>>>> >> >> >>
>> >>>>> >> >> >> A few pointers:
>> >>>>> >> >> >>
>> >>>>> >> >> >> - Use ITK Git master [1], which has support for Visual
>> >>>>> >> >> >> Studio
>> >>>>> >> >> >> 2015
>> >>>>> >> >> >> (support is not available in ITK 4.8.1).
>> >>>>> >> >> >> - If wrapping is built, ITK Git master also builds much
>> >>>>> >> >> >> faster.
>> >>>>> >> >> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
>> >>>>> >> >> >> configuration to greatly improve the build time.
>> >>>>> >> >> >>
>> >>>>> >> >> >> HTH,
>> >>>>> >> >> >> Matt
>> >>>>> >> >> >>
>> >>>>> >> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>> >>>>> >> >> >>
>> >>>>> >> >> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
>> >>>>> >> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>> >>>>> >> >> >> > Dear Brad,
>> >>>>> >> >> >> >
>> >>>>> >> >> >> > Thank you for your feedback. I figured out that my error
>> >>>>> >> >> >> > occurs
>> >>>>> >> >> >> > during
>> >>>>> >> >> >> > CMake
>> >>>>> >> >> >> > Configuration. I have attached an error message that I
>> >>>>> >> >> >> > receive.
>> >>>>> >> >> >> > Files
>> >>>>> >> >> >> > from
>> >>>>> >> >> >> > the same family are throwing this error - all start with
>> >>>>> >> >> >> > cmTC_XXXXX.exe
>> >>>>> >> >> >> > (see
>> >>>>> >> >> >> > attached Screen Shoot). If I ignore this and Build All in
>> >>>>> >> >> >> > MS
>> >>>>> >> >> >> > Visual
>> >>>>> >> >> >> > Studio
>> >>>>> >> >> >> > the Debug and Release is not populated (And there are no
>> >>>>> >> >> >> > error
>> >>>>> >> >> >> > messages
>> >>>>> >> >> >> > either.). I would appreciate any insight into this.
>> >>>>> >> >> >> >
>> >>>>> >> >> >> > Many thanks.
>> >>>>> >> >> >> > Tunde
>> >>>>> >> >> >> >
>> >>>>> >> >> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
>> >>>>> >> >> >> > <blowekamp at mail.nih.gov>
>> >>>>> >> >> >> > wrote:
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >> Hello,
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >> I don't think I have built ITK with the MS VS 12 2015
>> >>>>> >> >> >> >> GUI.
>> >>>>> >> >> >> >> But I
>> >>>>> >> >> >> >> do
>> >>>>> >> >> >> >> have a
>> >>>>> >> >> >> >> dashboard build with the compiler:
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual
>> >>>>> >> >> >> >> machine.
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >> Perhaps you could try building from the command line
>> >>>>> >> >> >> >> with
>> >>>>> >> >> >> >> cmake?
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >> cmake --build . --config Release
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >> HTH,
>> >>>>> >> >> >> >> Brad
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
>> >>>>> >> >> >> >> <a.tunde.szilagyi at gmail.com>
>> >>>>> >> >> >> >> wrote:
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >> Dear All,
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >> I would be interested what is the expected time to build
>> >>>>> >> >> >> >> all the
>> >>>>> >> >> >> >> ITK
>> >>>>> >> >> >> >> libraries for the first time in Microsoft Visual Studio
>> >>>>> >> >> >> >> 14
>> >>>>> >> >> >> >> 2015.
>> >>>>> >> >> >> >> It
>> >>>>> >> >> >> >> shows me
>> >>>>> >> >> >> >> that there 492 projects to build. It has been running
>> >>>>> >> >> >> >> for
>> >>>>> >> >> >> >> more
>> >>>>> >> >> >> >> then
>> >>>>> >> >> >> >> 17h
>> >>>>> >> >> >> >> on a
>> >>>>> >> >> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without
>> >>>>> >> >> >> >> error
>> >>>>> >> >> >> >> message.
>> >>>>> >> >> >> >> Perhaps
>> >>>>> >> >> >> >> I misunderstood this process?
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >> Many thanks.
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >> Best wishes,
>> >>>>> >> >> >> >> Tunde Szilagyi
>> >>>>> >> >> >> >> _______________________________________________
>> >>>>> >> >> >> >> Community mailing list
>> >>>>> >> >> >> >> Community at itk.org
>> >>>>> >> >> >> >> http://public.kitware.com/mailman/listinfo/community
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >>
>> >>>>> >> >> >> >
>> >>>>> >> >> >> >
>> >>>>> >> >> >> >
>> >>>>> >> >> >> > _______________________________________________
>> >>>>> >> >> >> > Community mailing list
>> >>>>> >> >> >> > Community at itk.org
>> >>>>> >> >> >> > http://public.kitware.com/mailman/listinfo/community
>> >>>>> >> >> >> >
>> >>>>> >> >> >
>> >>>>> >> >> >
>> >>>>> >> >
>> >>>>> >> >
>> >>>>> >
>> >>>>> >
>> >>>>> >
>> >>>>> >
>> >>>>> > --
>> >>>>> > --
>> >>>>> > Tunde
>> >>>>
>> >>>>
>> >>>>
>> >>>>
>> >>>> --
>> >>>> --
>> >>>> Tunde
>> >>
>> >>
>> >>
>> >>
>> >> --
>> >> --
>> >> Tunde
>> >
>> >
>> >
>> >
>> > --
>> > --
>> > Tunde
>
>
>
>
> --
> --
> Tunde

From a.tunde.szilagyi at gmail.com  Thu Nov 12 16:08:36 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Thu, 12 Nov 2015 22:08:36 +0100
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CALzTN-SgfTGGQrA1POXT+R2kNOWTowMXqYZUOgE3hT07DuVZTA@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
 <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
 <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>
 <CALzTN-THQzM4cuG8kmJAtCtZuB3hpL6J6Y-iDsVmVbjGsF1k=w@mail.gmail.com>
 <CAMeM8yYrCg1AVkXoPW=okOX5UdL73EX92V=MJiKRZ66kFktwfQ@mail.gmail.com>
 <CAJFNcCQjn-T-LWzsiRpsp7vFoK5nMEm9YOfvCNJ64U8pME=HAg@mail.gmail.com>
 <CAMeM8yYvb59L4ygUETt0rmw6mXt1XeRM+EkjGp9d=KEEd9BXPQ@mail.gmail.com>
 <CAMeM8yZxH2-4MS9v2HXF_hbSoV_DwUXrXpJxiz2+m+5k43s5Yg@mail.gmail.com>
 <CALzTN-R0L1dw0ZbD5_AaOeDnE3DtXNAs8uvBN6ABLQbH0+-YyA@mail.gmail.com>
 <CAMeM8yaRubxK0xWGXRDJoSV2SRVX0eJTxUirNvXWqhcOSKOMNw@mail.gmail.com>
 <CALzTN-SgfTGGQrA1POXT+R2kNOWTowMXqYZUOgE3hT07DuVZTA@mail.gmail.com>
Message-ID: <CAMeM8yZegM9-Mm_04Vgv4+9-N1rp=Ntvw2o3kxnHAAJ3c01r-g@mail.gmail.com>

Hi Matt,

Many thanks.

Tunde

On 12 November 2015 at 22:05, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Tunde,
>
> Yes, start from a clean source tree and especially a clean build tree
> should help.  The ITK Software Guide has some guidance on getting
> started:
>
>
> http://itk.org/ITKSoftwareGuide/html/Book1/ITKSoftwareGuide-Book1ch2.html#x27-170002
>
> HTH,
> Matt
>
> On Thu, Nov 12, 2015 at 4:00 PM, T?nde Szil?gyi
> <a.tunde.szilagyi at gmail.com> wrote:
> > Hi Matt,
> >
> > I am compiling ITK for the first time. I have not used it before. I have
> > attached the output when I have tried to build it.
> >
> > Many thanks.
> > Tunde
> >
> > ps. Perhaps I just erase everything and start from zero...
> >
> > On 12 November 2015 at 21:54, Matt McCormick <matt.mccormick at kitware.com
> >
> > wrote:
> >>
> >> Hi Tunde,
> >>
> >> Those look like paths from ITKv3.  Is ITKv4 being used?
> >>
> >> HTH,
> >> Matt
> >>
> >> On Thu, Nov 12, 2015 at 3:38 PM, T?nde Szil?gyi
> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> > Hi Matt,
> >> >
> >> > It appears that the changes have been made successfully.
> Unfortunately,
> >> > CMake is still not happy. I have attached the output. I would
> appreciate
> >> > help from anyone. Many thanks.
> >> >
> >> > Tunde
> >> >
> >> > On 12 November 2015 at 21:32, T?nde Szil?gyi
> >> > <a.tunde.szilagyi at gmail.com>
> >> > wrote:
> >> >>
> >> >> Simon, many thanks that worked! I have attached the new set of
> feedback
> >> >> that I have received. I assume this is all fine..
> >> >>
> >> >> On 12 November 2015 at 21:27, Simon Alexander <skalexander at gmail.com
> >
> >> >> wrote:
> >> >>>
> >> >>> Matt, should that be a "git reset --merge" ?
> >> >>>
> >> >>>
> >> >>> On Thu, 12 Nov 2015 at 15:14 T?nde Szil?gyi
> >> >>> <a.tunde.szilagyi at gmail.com>
> >> >>> wrote:
> >> >>>>
> >> >>>> Hi Matt,
> >> >>>>
> >> >>>> Many thanks. Unfortunately the suggested command did not solve the
> >> >>>> problem, see attachment.
> >> >>>>
> >> >>>> Many thanks.
> >> >>>> Tunde
> >> >>>>
> >> >>>> On 12 November 2015 at 21:05, Matt McCormick
> >> >>>> <matt.mccormick at kitware.com> wrote:
> >> >>>>>
> >> >>>>> Hi Tunde,
> >> >>>>>
> >> >>>>> The prompt indicates the repository is an intermediate state
> >> >>>>> (MERGING), and git is not allowing the requested actions because
> it
> >> >>>>> does not want changes made in that intermediate state to get lost.
> >> >>>>>
> >> >>>>> To get out of the intermediate state, use
> >> >>>>>
> >> >>>>>   git reset --hard origin/master
> >> >>>>>
> >> >>>>> then try again.
> >> >>>>>
> >> >>>>> HTH,
> >> >>>>> Matt
> >> >>>>>
> >> >>>>> On Thu, Nov 12, 2015 at 2:52 PM, T?nde Szil?gyi
> >> >>>>> <a.tunde.szilagyi at gmail.com> wrote:
> >> >>>>> > Hi Matt,
> >> >>>>> >
> >> >>>>> > Many thanks. I went through the suggested routes (see
> attachment).
> >> >>>>> > I
> >> >>>>> > am
> >> >>>>> > certain that I am doing something wrong (but I do not understand
> >> >>>>> > what
> >> >>>>> > it
> >> >>>>> > might be), because I am getting similar error messages.
> >> >>>>> >
> >> >>>>> > Many thanks.
> >> >>>>> > Tunde
> >> >>>>> >
> >> >>>>> > On 12 November 2015 at 19:33, Matt McCormick
> >> >>>>> > <matt.mccormick at kitware.com>
> >> >>>>> > wrote:
> >> >>>>> >>
> >> >>>>> >> Hi Tunde,
> >> >>>>> >>
> >> >>>>> >> I mistakenly thought you were working on the "release" branch,
> so
> >> >>>>> >> I
> >> >>>>> >> expected the commands to run would be
> >> >>>>> >>
> >> >>>>> >>   git checkout release
> >> >>>>> >>   git pull
> >> >>>>> >>
> >> >>>>> >> If you were not working on the release branch, it can be
> created
> >> >>>>> >> locally
> >> >>>>> >> with
> >> >>>>> >>
> >> >>>>> >>   git checkout -b release origin/release
> >> >>>>> >>   git pull
> >> >>>>> >>
> >> >>>>> >> It is possible to also directly get the patch from Gerrit, but
> >> >>>>> >> not
> >> >>>>> >> do
> >> >>>>> >> use the 'pull' line for this case.  Instead, use the 'checkout'
> >> >>>>> >> line,
> >> >>>>> >> i.e.
> >> >>>>> >>
> >> >>>>> >>   git fetch http://review.source.kitware.com/ITK
> >> >>>>> >> refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054
> >> >>>>> >>
> >> >>>>> >> Note that "-b CMP0054" was added to give a branch name.
> >> >>>>> >>
> >> >>>>> >> But, the 4.8.2 archives were just created from the latest
> >> >>>>> >> "release"
> >> >>>>> >> branch, so those can be tried too:
> >> >>>>> >>
> >> >>>>> >>   https://sourceforge.net/projects/itk/files/itk/4.8/
> >> >>>>> >>
> >> >>>>> >>
> >> >>>>> >> Thanks for testing and providing feedback.
> >> >>>>> >>
> >> >>>>> >> Matt
> >> >>>>> >>
> >> >>>>> >> On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
> >> >>>>> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> >>>>> >> > Hi Matt,
> >> >>>>> >> >
> >> >>>>> >> > I have pulled the suggested patch, but I am having the error
> >> >>>>> >> > message
> >> >>>>> >> > attached. I would appreciate any feedback from anyone.
> >> >>>>> >> >
> >> >>>>> >> > Many thanks in advance.
> >> >>>>> >> >
> >> >>>>> >> > Best wishes,
> >> >>>>> >> > Tunde
> >> >>>>> >> >
> >> >>>>> >> > On 5 November 2015 at 21:04, Matt McCormick
> >> >>>>> >> > <matt.mccormick at kitware.com>
> >> >>>>> >> > wrote:
> >> >>>>> >> >>
> >> >>>>> >> >> Hi Tunde,
> >> >>>>> >> >>
> >> >>>>> >> >> These CMake warnings are addressed by this patch:
> >> >>>>> >> >>
> >> >>>>> >> >>   http://review.source.kitware.com/#/c/20154/1
> >> >>>>> >> >>
> >> >>>>> >> >> which I just backported to the "release" branch. Please 'git
> >> >>>>> >> >> pull' to
> >> >>>>> >> >> fetch the changes.
> >> >>>>> >> >>
> >> >>>>> >> >> Please let the list know if there are any other issues.
> >> >>>>> >> >> According to
> >> >>>>> >> >> the dashboard, there are also some warnings to address:
> >> >>>>> >> >>
> >> >>>>> >> >>
> >> >>>>> >> >>
> >> >>>>> >> >>
> https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
> >> >>>>> >> >>
> >> >>>>> >> >> Patches for these warnings would be welcome :-)
> >> >>>>> >> >>
> >> >>>>> >> >> Thanks,
> >> >>>>> >> >> Matt
> >> >>>>> >> >>
> >> >>>>> >> >> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
> >> >>>>> >> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> >>>>> >> >> > Hi Matt,
> >> >>>>> >> >> >
> >> >>>>> >> >> > Thank you, this fixed some of the problems I was facing.
> Now
> >> >>>>> >> >> > I
> >> >>>>> >> >> > can
> >> >>>>> >> >> > build
> >> >>>>> >> >> > some packages except the ITKNumerics, ITKStatistics and
> >> >>>>> >> >> > ITKFEM.
> >> >>>>> >> >> > I
> >> >>>>> >> >> > have
> >> >>>>> >> >> > attached the error message that I received in CMAKE. There
> >> >>>>> >> >> > are
> >> >>>>> >> >> > no
> >> >>>>> >> >> > explanations in the MS VS 2015 during build.
> >> >>>>> >> >> >
> >> >>>>> >> >> > Many thanks in advance.
> >> >>>>> >> >> >
> >> >>>>> >> >> > Tunde
> >> >>>>> >> >> >
> >> >>>>> >> >> >
> >> >>>>> >> >> > On 5 November 2015 at 16:22, Matt McCormick
> >> >>>>> >> >> > <matt.mccormick at kitware.com>
> >> >>>>> >> >> > wrote:
> >> >>>>> >> >> >>
> >> >>>>> >> >> >> Hi Tunde,
> >> >>>>> >> >> >>
> >> >>>>> >> >> >> A few pointers:
> >> >>>>> >> >> >>
> >> >>>>> >> >> >> - Use ITK Git master [1], which has support for Visual
> >> >>>>> >> >> >> Studio
> >> >>>>> >> >> >> 2015
> >> >>>>> >> >> >> (support is not available in ITK 4.8.1).
> >> >>>>> >> >> >> - If wrapping is built, ITK Git master also builds much
> >> >>>>> >> >> >> faster.
> >> >>>>> >> >> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
> >> >>>>> >> >> >> configuration to greatly improve the build time.
> >> >>>>> >> >> >>
> >> >>>>> >> >> >> HTH,
> >> >>>>> >> >> >> Matt
> >> >>>>> >> >> >>
> >> >>>>> >> >> >> [1] http://www.itk.org/Wiki/ITK/Git
> >> >>>>> >> >> >>
> >> >>>>> >> >> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
> >> >>>>> >> >> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> >>>>> >> >> >> > Dear Brad,
> >> >>>>> >> >> >> >
> >> >>>>> >> >> >> > Thank you for your feedback. I figured out that my
> error
> >> >>>>> >> >> >> > occurs
> >> >>>>> >> >> >> > during
> >> >>>>> >> >> >> > CMake
> >> >>>>> >> >> >> > Configuration. I have attached an error message that I
> >> >>>>> >> >> >> > receive.
> >> >>>>> >> >> >> > Files
> >> >>>>> >> >> >> > from
> >> >>>>> >> >> >> > the same family are throwing this error - all start
> with
> >> >>>>> >> >> >> > cmTC_XXXXX.exe
> >> >>>>> >> >> >> > (see
> >> >>>>> >> >> >> > attached Screen Shoot). If I ignore this and Build All
> in
> >> >>>>> >> >> >> > MS
> >> >>>>> >> >> >> > Visual
> >> >>>>> >> >> >> > Studio
> >> >>>>> >> >> >> > the Debug and Release is not populated (And there are
> no
> >> >>>>> >> >> >> > error
> >> >>>>> >> >> >> > messages
> >> >>>>> >> >> >> > either.). I would appreciate any insight into this.
> >> >>>>> >> >> >> >
> >> >>>>> >> >> >> > Many thanks.
> >> >>>>> >> >> >> > Tunde
> >> >>>>> >> >> >> >
> >> >>>>> >> >> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
> >> >>>>> >> >> >> > <blowekamp at mail.nih.gov>
> >> >>>>> >> >> >> > wrote:
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >> Hello,
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >> I don't think I have built ITK with the MS VS 12 2015
> >> >>>>> >> >> >> >> GUI.
> >> >>>>> >> >> >> >> But I
> >> >>>>> >> >> >> >> do
> >> >>>>> >> >> >> >> have a
> >> >>>>> >> >> >> >> dashboard build with the compiler:
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >>
> https://open.cdash.org/buildSummary.php?buildid=4088244
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >> This take about 3 hours, on a 4 core 4 GB memory
> virtual
> >> >>>>> >> >> >> >> machine.
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >> Perhaps you could try building from the command line
> >> >>>>> >> >> >> >> with
> >> >>>>> >> >> >> >> cmake?
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >> cmake --build . --config Release
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >> HTH,
> >> >>>>> >> >> >> >> Brad
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
> >> >>>>> >> >> >> >> <a.tunde.szilagyi at gmail.com>
> >> >>>>> >> >> >> >> wrote:
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >> Dear All,
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >> I would be interested what is the expected time to
> build
> >> >>>>> >> >> >> >> all the
> >> >>>>> >> >> >> >> ITK
> >> >>>>> >> >> >> >> libraries for the first time in Microsoft Visual
> Studio
> >> >>>>> >> >> >> >> 14
> >> >>>>> >> >> >> >> 2015.
> >> >>>>> >> >> >> >> It
> >> >>>>> >> >> >> >> shows me
> >> >>>>> >> >> >> >> that there 492 projects to build. It has been running
> >> >>>>> >> >> >> >> for
> >> >>>>> >> >> >> >> more
> >> >>>>> >> >> >> >> then
> >> >>>>> >> >> >> >> 17h
> >> >>>>> >> >> >> >> on a
> >> >>>>> >> >> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without
> >> >>>>> >> >> >> >> error
> >> >>>>> >> >> >> >> message.
> >> >>>>> >> >> >> >> Perhaps
> >> >>>>> >> >> >> >> I misunderstood this process?
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >> Many thanks.
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >> Best wishes,
> >> >>>>> >> >> >> >> Tunde Szilagyi
> >> >>>>> >> >> >> >> _______________________________________________
> >> >>>>> >> >> >> >> Community mailing list
> >> >>>>> >> >> >> >> Community at itk.org
> >> >>>>> >> >> >> >> http://public.kitware.com/mailman/listinfo/community
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >>
> >> >>>>> >> >> >> >
> >> >>>>> >> >> >> >
> >> >>>>> >> >> >> >
> >> >>>>> >> >> >> > _______________________________________________
> >> >>>>> >> >> >> > Community mailing list
> >> >>>>> >> >> >> > Community at itk.org
> >> >>>>> >> >> >> > http://public.kitware.com/mailman/listinfo/community
> >> >>>>> >> >> >> >
> >> >>>>> >> >> >
> >> >>>>> >> >> >
> >> >>>>> >> >
> >> >>>>> >> >
> >> >>>>> >
> >> >>>>> >
> >> >>>>> >
> >> >>>>> >
> >> >>>>> > --
> >> >>>>> > --
> >> >>>>> > Tunde
> >> >>>>
> >> >>>>
> >> >>>>
> >> >>>>
> >> >>>> --
> >> >>>> --
> >> >>>> Tunde
> >> >>
> >> >>
> >> >>
> >> >>
> >> >> --
> >> >> --
> >> >> Tunde
> >> >
> >> >
> >> >
> >> >
> >> > --
> >> > --
> >> > Tunde
> >
> >
> >
> >
> > --
> > --
> > Tunde
>



-- 
--
Tunde
-------------- next part --------------
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From david.mo.burns at gmail.com  Thu Nov 12 20:38:57 2015
From: david.mo.burns at gmail.com (David Burns)
Date: Thu, 12 Nov 2015 20:38:57 -0500
Subject: [ITK] [ITK-dev] 2D/3D registration in v4
Message-ID: <56453F31.5010206@gmail.com>

Dear Insight,

I am having the following trouble attempting 2D/3D registration of 
xray/CT with ITK v4 registration framework.

The basics: The moving image is a 3D volume, and the fixed image is a 2D 
projection. An interpolator calculates a synthetic cone-beam projection 
for the moving image (volume) and compares to the fixed 2D image.

The v4 registration framework doesn't allow me to use a 2D fixed and 3D 
moving image -> won't compile. So I need to setup the fixed image as 3D, 
even though it is 2D data. I can compile, but I get the following error 
at run time


ExceptionObject caught !

itk::ExceptionObject (0x20cfac0)
Location: "void itk::RecursiveSeparableImageFilter<TInputImage, 
TOutputImage>::BeforeThreadedGenerateData() [with TInputImage = 
itk::Image<float, 3u>; TOutputImage = itk::Image<float, 3u>]"
File: /usr/local/include/ITK-4.8/itkRecursiveSeparableImageFilter.hxx
Line: 245
Description: itk::ERROR: RecursiveGaussianImageFilter(0x2089fb0): The 
number of pixels along direction 2 is less than 4. This filter requires 
a minimum of four pixels along the dimension to be processed.

It seems this behavior does not occur in the v3 registration framework 
and 2D/3D registrations were possible, however, I want to take advantage 
of the threading features in v4. How would you suggest I proceed?


Thanks
David Burns






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From david.mo.burns at gmail.com  Thu Nov 12 21:51:41 2015
From: david.mo.burns at gmail.com (David Burns)
Date: Thu, 12 Nov 2015 21:51:41 -0500
Subject: [ITK] [ITK-dev]   2D/3D registration in v4
In-Reply-To: <CAKKNfuJmQ65G_D4ishVM6JoMmWivR7GB1DCpHYKsP_3QhQEukA@mail.gmail.com>
References: <56453F31.5010206@gmail.com>
 <CAKKNfuJmQ65G_D4ishVM6JoMmWivR7GB1DCpHYKsP_3QhQEukA@mail.gmail.com>
Message-ID: <5645503D.9030808@gmail.com>

I think this issue relates to the way the metrics compute gradients. It 
can be reproduced using

Examples/RegistrationITKv4/ImageRegistration1.cxx
and
Examples/RegistrationITKv3/ImageRegistration1.cxx

by setting Dimensions to 3, and using 2D images as inputs.

I found using: metric->ComputeGradientOff()
will allow the registration to proceed for ITKv3 using the 
MeanSquaresImageToImageMetric, but there is no such function for the v4 
version.
Using a metric that does not require gradients (eg Mattes) will allow 
the registration to proceed in both v3 and v4.

I humbly suggest the registration framework and metrics should be able 
to handle this situation. Also of note to those interested, the v3 
registration on my system goes about twice as fast per iteration.

What are your thoughts?

David

On 11/12/2015 08:41 PM, Matias Montroull wrote:
>
> David, would you be able to share the code you wrote?
>
> On Nov 12, 2015 10:39 PM, "David Burns" <david.mo.burns at gmail.com 
> <mailto:david.mo.burns at gmail.com>> wrote:
>
>     Dear Insight,
>
>     I am having the following trouble attempting 2D/3D registration of
>     xray/CT with ITK v4 registration framework.
>
>     The basics: The moving image is a 3D volume, and the fixed image
>     is a 2D projection. An interpolator calculates a synthetic
>     cone-beam projection for the moving image (volume) and compares to
>     the fixed 2D image.
>
>     The v4 registration framework doesn't allow me to use a 2D fixed
>     and 3D moving image -> won't compile. So I need to setup the fixed
>     image as 3D, even though it is 2D data. I can compile, but I get
>     the following error at run time
>
>
>     ExceptionObject caught !
>
>     itk::ExceptionObject (0x20cfac0)
>     Location: "void itk::RecursiveSeparableImageFilter<TInputImage,
>     TOutputImage>::BeforeThreadedGenerateData() [with TInputImage =
>     itk::Image<float, 3u>; TOutputImage = itk::Image<float, 3u>]"
>     File: /usr/local/include/ITK-4.8/itkRecursiveSeparableImageFilter.hxx
>     Line: 245
>     Description: itk::ERROR: RecursiveGaussianImageFilter(0x2089fb0):
>     The number of pixels along direction 2 is less than 4. This filter
>     requires a minimum of four pixels along the dimension to be processed.
>
>     It seems this behavior does not occur in the v3 registration
>     framework and 2D/3D registrations were possible, however, I want
>     to take advantage of the threading features in v4. How would you
>     suggest I proceed?
>
>
>     Thanks
>     David Burns
>
>
>
>
>
>
>     _______________________________________________
>     Powered by www.kitware.com <http://www.kitware.com>
>
>     Visit other Kitware open-source projects at
>     http://www.kitware.com/opensource/opensource.html
>
>     Kitware offers ITK Training Courses, for more information visit:
>     http://kitware.com/products/protraining.php
>
>     Please keep messages on-topic and check the ITK FAQ at:
>     http://www.itk.org/Wiki/ITK_FAQ
>
>     Follow this link to subscribe/unsubscribe:
>     http://public.kitware.com/mailman/listinfo/insight-developers
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From matt.mccormick at kitware.com  Fri Nov 13 18:04:48 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 13 Nov 2015 18:04:48 -0500
Subject: [ITK] [ITK-dev] About the last optimization
	on	VariableLengthVector
In-Reply-To: <5644C9C7.6030603@c-s.fr>
References: <5644C9C7.6030603@c-s.fr>
Message-ID: <CALzTN-QDO_6NPORBSrLSTNacwyTUxv_niYOkVz2nNkdcaC-GRQ@mail.gmail.com>

Hello Luc,

Thanks for all your awesome work on increasing the performance of
itk::VariableLengthVector's and ITK.  For those that have not kept up
on Gerrit activity, Luc has increased performance of resampling
VariableLengthVector's, added expression template support, and
populated a new itk::mpl:: namespace with meta-programming classes!


> The *purpose* of this patch (and the previous ones as well) is to
> eliminate allocations made of each pixel.
>
> This will permit (on a Linear Interpolation test case to reduce the
> computation time, on a VectorImage, from 85s to 27s -- it was around 2
> minutes before the first patches, and on the same image read as an
> itk::Image it takes ~15-17s)

Excellent!


> First problem: PixelType Evalutate(...);
> Currently, when we apply an ImageFunction, we call Evaluate() function
> which requires the creation of a new VLV. Indeed this function return a
> new pixel value by value.
> The only way to get rid of the variable creation is to return the new
> value as an output reference parameter.
>
> This means all classes that inherit from ImageFunction will need to
> change the signature of their EvaluateXxxx() functions. And that all
> client classes must take this into account. In other words, many
> modifications will be required if we want to have better performances on
> VLV.
>
> Note however, it's quite simple to migrate gradually the source code to
> the new interface : we can have all client code explicitly use the new
> (and badly named) EvaluateNoCopy(), which in turn call the old
> Evaluate() -- or the other way around (which has a drawback regarding
> cached variables).

This sounds good.  EvaluateNoCopy() seems like a reasonable name to me.


> Second Problem: Temporary pixel values
> Some computations will produce new pixel values. For instance
>   p = p0 + (p1 - p0) * d;
> produces 3 new pixels values.
> This has already been taken care of in the previous patches thanks to
> Expression Templates.

Nice :-)


> Third Problem: Local Variables
> 3.1- Auxiliary variables
> Some algorithms (e.g. BSplines interpolations) require dynamic data
> structures like matrices. This implies allocation at each iteration.
> This particular problem isn't addressed in this patch. The solution to
> 3.2 will help to provide an solution.
>
> 3.2- Factorized computations
> Sometimes, a complex computation will take advantage of code
> factorisation (easier to maintain, and better performances). e.g.
>
>    Pixel p4 = p0 + (p1 - p0) * d0
>    Pixel p5 = p2 + (p3 - p2) * d1
>    output = p4 + (p5 - p4) * d2
>
> This implies new pixel values, hence dynamic allocations.
>
> In c++11, we could (almost) have written
>    auto p4 = p0 + (p1 - p0) * d0
>
> Except that p4 is an expression template. Its type is quite complex to
> express in plain C++98/03. But the problem will be that the current
> implementation of expression templates uses references. Here p4 will be
> made of dangling references, the code would be bugged.
> Workarounds would be possible in C++11 as it will permit us to
> distinguish lvalue references from rvalue references in order to copy
> the latter, and keep references to the former.
> We are not in C++11 yet. Moreover, this would not factorize the
> computations.
>
> We need a C++98 solution.
> The only way I see is to rely on cached variables.
> This means that the ImageFunctions are no longer [[pure]] functions :
> they'll mutate some variables that we want to allocate once per
> ImageFunction and ... per thread.
> Indeed the ImageFunctions shall be reentrant.
>
> I was first hoping to use thread_local variables. Alas they cannot be
> non-static attributes. This is a problem: if I'm not wrong, a same
> ImageFunction could be used multiple times in a same processing chain.
>
> We still have a simple solution, but it requires a second modification
> to Evaluate() signature: we need to pass the current ThreadId.
>
> The new drawback: code migration requires more work. We can not write
> Evaluate() in terms of EvaluateNoCopy() as the latter requires the
> threadId that the former doesn't know. This is the reason why I expect
> the tests to fail.
> Instead we need to convert all client code (like the WarpImageFilter)
> and have the default implementation of EvaluateNoCopy() to call the
> already written and not yet converted Evalutate().

This would be messy, and it would not work very well since the
ImageFunction's are not involved in orchestration of the threading.
Instead, it would be better to make the necessary auxiliary variables
private variables.  Parallel code that uses ImageFunction's should
create one ImageFunction instance per thread.


> Fourth Problem: heterogeneous data types (i.e. castings)
> The input image type, the output image type, and the internal pixel type
> may all be different. That's why the code contain so many static_casts.
>
> Alas a static_cast<> on pixels will induce the creation of new pixel values.
> This is contrary to the purpose of this patch.
> Copy constructors and assignment operators already support on-the-fly
> implicit static_casting.
> We still need to be able to require casting only when it's required.
> That's where the new function CastInto(), MoveInto() and As() come into
> rescue.

So compiler's are not intelligent to make a static_cast<> a no-op when
the types are the same?


Thanks,
Matt
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From matt.mccormick at kitware.com  Fri Nov 13 18:11:01 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 13 Nov 2015 18:11:01 -0500
Subject: [ITK] [ITK-dev]  2D/3D registration in v4
In-Reply-To: <5645503D.9030808@gmail.com>
References: <56453F31.5010206@gmail.com>
 <CAKKNfuJmQ65G_D4ishVM6JoMmWivR7GB1DCpHYKsP_3QhQEukA@mail.gmail.com>
 <5645503D.9030808@gmail.com>
Message-ID: <CALzTN-ShQU=80WwHOc+3tE92G8VckEhwqTLXyxnSC=v_cj3npw@mail.gmail.com>

Hi David,

On Thu, Nov 12, 2015 at 9:51 PM, David Burns <david.mo.burns at gmail.com> wrote:
> I think this issue relates to the way the metrics compute gradients. It can
> be reproduced using
>
> Examples/RegistrationITKv4/ImageRegistration1.cxx
> and
> Examples/RegistrationITKv3/ImageRegistration1.cxx
>
> by setting Dimensions to 3, and using 2D images as inputs.
>
> I found using: metric->ComputeGradientOff()
> will allow the registration to proceed for ITKv3 using the
> MeanSquaresImageToImageMetric, but there is no such function for the v4
> version.
> Using a metric that does not require gradients (eg Mattes) will allow the
> registration to proceed in both v3 and v4.
>
> I humbly suggest the registration framework and metrics should be able to
> handle this situation. Also of note to those interested, the v3 registration
> on my system goes about twice as fast per iteration.

Patches would be welcome to improve the situation! Details on patch
submission are here:

  http://www.itk.org/Wiki/ITK/Git/Develop


In terms of performance, we are creating a system of benchmarks so
that we can quantify performance to make improvements and identify
regressions.  The work is being added to this repository:

  https://github.com/InsightSoftwareConsortium/ITKPerformanceBenchmarks

The basic infrastructure will be in place in a few weeks time, after
which you create a pull request for your use case. This will help make
it possible to improve performance on your use case.

Thanks,
Matt
_______________________________________________
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From matt.mccormick at kitware.com  Fri Nov 13 18:15:16 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 13 Nov 2015 18:15:16 -0500
Subject: [ITK] [ITK-dev] Precompiled header support
Message-ID: <CALzTN-SbJQmcAkVXJKJHyVTRp3iGNFSfmzLN0PU5DLX3r_Qftg@mail.gmail.com>

Hi folks,

In the hope of reducing ITK build time, I started work on adding
pre-compiled header support to ITK here:

  http://review.source.kitware.com/#/c/20349/

Unfortunately, after testing the build times with both GCC and Clang,
there was no notable benefit to build times.  I'm abandoning the
patch, and hopefully the lesson is beneficial for any with false-hopes
of the advantages to pre-compiled headers!

Thanks,
Matt
_______________________________________________
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From matt.mccormick at kitware.com  Fri Nov 13 18:46:54 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 13 Nov 2015 18:46:54 -0500
Subject: [ITK] [ITK-dev] BUILD_EXAMPLES default to OFF
Message-ID: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>

Hi folks,

In order to improve the first impressions of new users of the toolkit,
I would like change the default BUILD_EXAMPLES build configuration to
OFF.  This will decrease the default build time, and it the reduced
number of targets will help with Visual Studio builds.

When developing, it is nice to have BUILD_EXAMPLES OFF too, at least
at first, to decrease build time.

We would have to ensure that all dashboard builds turn BUILD_EXAMPLES ON.

Thoughts?

Thanks,
Matt
_______________________________________________
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From bill.lorensen at gmail.com  Fri Nov 13 18:49:03 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Fri, 13 Nov 2015 18:49:03 -0500
Subject: [ITK] [ITK-dev] BUILD_EXAMPLES default to OFF
In-Reply-To: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>
References: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>
Message-ID: <CADZJ4hOh8Ddq0z-Mcgw_fieO9cd3wB3e=h0wVCdt8XS5dtCf=Q@mail.gmail.com>

+1
On Nov 13, 2015 6:46 PM, "Matt McCormick" <matt.mccormick at kitware.com>
wrote:

> Hi folks,
>
> In order to improve the first impressions of new users of the toolkit,
> I would like change the default BUILD_EXAMPLES build configuration to
> OFF.  This will decrease the default build time, and it the reduced
> number of targets will help with Visual Studio builds.
>
> When developing, it is nice to have BUILD_EXAMPLES OFF too, at least
> at first, to decrease build time.
>
> We would have to ensure that all dashboard builds turn BUILD_EXAMPLES ON.
>
> Thoughts?
>
> Thanks,
> Matt
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
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From hans-johnson at uiowa.edu  Fri Nov 13 19:02:57 2015
From: hans-johnson at uiowa.edu (Johnson, Hans J)
Date: Sat, 14 Nov 2015 00:02:57 +0000
Subject: [ITK] [ITK-dev] BUILD_EXAMPLES default to OFF
In-Reply-To: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>
References: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>
Message-ID: <D8AE99EF-8BF1-4BEA-B743-DE9497F31A49@uiowa.edu>

+1 too.





On 11/13/15, 5:46 PM, "Insight-developers on behalf of Matt McCormick" <insight-developers-bounces at itk.org on behalf of matt.mccormick at kitware.com> wrote:

>Hi folks,
>
>In order to improve the first impressions of new users of the toolkit,
>I would like change the default BUILD_EXAMPLES build configuration to
>OFF.  This will decrease the default build time, and it the reduced
>number of targets will help with Visual Studio builds.
>
>When developing, it is nice to have BUILD_EXAMPLES OFF too, at least
>at first, to decrease build time.
>
>We would have to ensure that all dashboard builds turn BUILD_EXAMPLES ON.
>
>Thoughts?
>
>Thanks,
>Matt
>_______________________________________________
>Powered by www.kitware.com
>
>Visit other Kitware open-source projects at
>http://www.kitware.com/opensource/opensource.html
>
>Kitware offers ITK Training Courses, for more information visit:
>http://kitware.com/products/protraining.php
>
>Please keep messages on-topic and check the ITK FAQ at:
>http://www.itk.org/Wiki/ITK_FAQ
>
>Follow this link to subscribe/unsubscribe:
>http://public.kitware.com/mailman/listinfo/insight-developers


________________________________
Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is confidential and may be legally privileged.  If you are not the intended recipient, you are hereby notified that any retention, dissemination, distribution, or copying of this communication is strictly prohibited.  Please reply to the sender that you have received the message in error, then delete it.  Thank you.
________________________________
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From david.mo.burns at gmail.com  Fri Nov 13 21:29:09 2015
From: david.mo.burns at gmail.com (David Burns)
Date: Fri, 13 Nov 2015 21:29:09 -0500
Subject: [ITK] [ITK-dev]  2D/3D registration in v4
In-Reply-To: <CALzTN-ShQU=80WwHOc+3tE92G8VckEhwqTLXyxnSC=v_cj3npw@mail.gmail.com>
References: <56453F31.5010206@gmail.com>
 <CAKKNfuJmQ65G_D4ishVM6JoMmWivR7GB1DCpHYKsP_3QhQEukA@mail.gmail.com>
 <5645503D.9030808@gmail.com>
 <CALzTN-ShQU=80WwHOc+3tE92G8VckEhwqTLXyxnSC=v_cj3npw@mail.gmail.com>
Message-ID: <56469C75.3030102@gmail.com>

Thanks Matt for your response.

For now I will proceed using metrics that don't require gradients.

At some point, it would be nice for the framework to handle 2D images in 
the 3D coordinate system.

Should we log this issue as a bug?

David

On 11/13/2015 06:11 PM, Matt McCormick wrote:
> Hi David,
>
> On Thu, Nov 12, 2015 at 9:51 PM, David Burns <david.mo.burns at gmail.com> wrote:
>> I think this issue relates to the way the metrics compute gradients. It can
>> be reproduced using
>>
>> Examples/RegistrationITKv4/ImageRegistration1.cxx
>> and
>> Examples/RegistrationITKv3/ImageRegistration1.cxx
>>
>> by setting Dimensions to 3, and using 2D images as inputs.
>>
>> I found using: metric->ComputeGradientOff()
>> will allow the registration to proceed for ITKv3 using the
>> MeanSquaresImageToImageMetric, but there is no such function for the v4
>> version.
>> Using a metric that does not require gradients (eg Mattes) will allow the
>> registration to proceed in both v3 and v4.
>>
>> I humbly suggest the registration framework and metrics should be able to
>> handle this situation. Also of note to those interested, the v3 registration
>> on my system goes about twice as fast per iteration.
> Patches would be welcome to improve the situation! Details on patch
> submission are here:
>
>    http://www.itk.org/Wiki/ITK/Git/Develop
>
>
> In terms of performance, we are creating a system of benchmarks so
> that we can quantify performance to make improvements and identify
> regressions.  The work is being added to this repository:
>
>    https://github.com/InsightSoftwareConsortium/ITKPerformanceBenchmarks
>
> The basic infrastructure will be in place in a few weeks time, after
> which you create a pull request for your use case. This will help make
> it possible to improve performance on your use case.
>
> Thanks,
> Matt

_______________________________________________
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Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
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From marcospuenteblanco at hotmail.com  Sat Nov 14 06:54:07 2015
From: marcospuenteblanco at hotmail.com (Marcos Puente Blanco)
Date: Sat, 14 Nov 2015 12:54:07 +0100
Subject: [ITK] [ITK-users] How can I read a dicom from database with
	SimpleITK
In-Reply-To: <DUB121-W45AF3D353EB9BEBC5CDE48DC110@phx.gbl>
References: <DUB121-W45AF3D353EB9BEBC5CDE48DC110@phx.gbl>
Message-ID: <DUB121-W168FEE64489D2FB765241FDC100@phx.gbl>



From: marcospuenteblanco at hotmail.com
To: insight-users at itk.org
Subject: How can I read a dicom from database with SimpleITK
Date: Fri, 13 Nov 2015 19:35:58 +0100




How can I do to read a dicom from database?
The methods I found only could read a file from a directory but how can I do to read from a MongoDB database for example.I need to retrieve it from the database save it as a file and then read it ? 		 	   		   		 	   		  
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From ROBERTAPALAMA at hotmail.it  Sun Nov 15 12:10:58 2015
From: ROBERTAPALAMA at hotmail.it (ROBERTA PALAMA')
Date: Sun, 15 Nov 2015 17:10:58 +0000
Subject: [ITK] HELP REQUEST
Message-ID: <AM3PR01MB1187EDC7CAF5DAA10348FAD0DE1F0@AM3PR01MB1187.eurprd01.prod.exchangelabs.com>

Hi,

I'm Roberta. I'm a student. I study Biomedical Engineering at the Politecnico of Turin. I'm working to my master thesis. It's about a 3D recostruction of a coronary artery biforcation. I have 9 films and I have extracted from every film the most significant frame. So I have 9 frames. I want to use RTK to try to do this recostruction.

For the software installation I have followed the online guide (http://wiki.openrtk.org/index.php/Main_Page).
The first part of the guide is the installation of the project ITK, but I 'm having problems to complete the compilation.

On my pc I have Windows 8.1. One of my friends ( that reads us in CC) is helping me in this but we have some problems to compile the sotware. In his pc (Windows) he succeeds to the the set up and to generate the cmake file ( using Cmake ver3.4.0 ).

After we have created the "cmake file" we have tryed to compile the source codes but the second error appares again, as shown in the figure in attachment.
What kind of softwares do you suggest me to create and compile everything?

Thanks for your kind attention!!! It's so much important for me so I hope yuo can give me a respons.

Best regards.

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From c.spanakis83 at gmail.com  Mon Nov 16 07:50:45 2015
From: c.spanakis83 at gmail.com (Constantinus Spanakis)
Date: Mon, 16 Nov 2015 14:50:45 +0200
Subject: [ITK] Convert obj to mha
Message-ID: <CAOZihbeFrDx0uTO3qmzJ_7ck6Fgc=rr4xFRLyNy5Ybq+Haq1Aw@mail.gmail.com>

Hello. Is it possible to convert an .obj/x3d file to mha in ITK?

From luc.hermitte at c-s.fr  Mon Nov 16 08:55:36 2015
From: luc.hermitte at c-s.fr (Luc Hermitte)
Date: Mon, 16 Nov 2015 14:55:36 +0100
Subject: [ITK] [ITK-dev] About the last optimization on
 VariableLengthVector
In-Reply-To: <CALzTN-QDO_6NPORBSrLSTNacwyTUxv_niYOkVz2nNkdcaC-GRQ@mail.gmail.com>
References: <5644C9C7.6030603@c-s.fr>
 <CALzTN-QDO_6NPORBSrLSTNacwyTUxv_niYOkVz2nNkdcaC-GRQ@mail.gmail.com>
Message-ID: <5649E058.5010905@c-s.fr>

Hi,

Le 14/11/2015 00:04, Matt McCormick a ?crit :
> Thanks for all your awesome work on increasing the performance of
> itk::VariableLengthVector's and ITK.

Thank you.

> [...snip...]

>> Third Problem: Local Variables
>> 3.1- Auxiliary variables
>> Some algorithms (e.g. BSplines interpolations) require dynamic data
>> structures like matrices. This implies allocation at each iteration.
>> This particular problem isn't addressed in this patch. The solution to
>> 3.2 will help to provide an solution.
>>
>> 3.2- Factorized computations
>> [...]
>>
>> We need a C++98 solution.
>> The only way I see is to rely on cached variables.
>> This means that the ImageFunctions are no longer [[pure]] functions :
>> they'll mutate some variables that we want to allocate once per
>> ImageFunction and ... per thread.
>> Indeed the ImageFunctions shall be reentrant.
>>
>> I was first hoping to use thread_local variables. Alas they cannot be
>> non-static attributes. This is a problem: if I'm not wrong, a same
>> ImageFunction could be used multiple times in a same processing chain.
>>
>> We still have a simple solution, but it requires a second modification
>> to Evaluate() signature: we need to pass the current ThreadId.
>>
>> The new drawback: code migration requires more work. We can not write
>> Evaluate() in terms of EvaluateNoCopy() as the latter requires the
>> threadId that the former doesn't know. This is the reason why I expect
>> the tests to fail.
>> Instead we need to convert all client code (like the WarpImageFilter)
>> and have the default implementation of EvaluateNoCopy() to call the
>> already written and not yet converted Evalutate().
> 
> This would be messy, and it would not work very well since the
> ImageFunction's are not involved in orchestration of the threading.
> Instead, it would be better to make the necessary auxiliary variables
> private variables.  Parallel code that uses ImageFunction's should
> create one ImageFunction instance per thread.

I'm afraid that with this choice, code that currently works well in
parallel won't work anymore. End users will need to rewrite all uses of
image functions in order to use them in MT code. And I guess we will
also need to rewrite several test cases.

Unless we duplicate the Evaluate() code : i.e. unless we keep the
current version, and we add the new and optimized rewrite (for VLV in
most cases, or for every kind of variables in some other cases (e.g.
BSpline interpolation where caching matrix allocations helps reduce
computation time))
Duplicating image function algorithms doesn't seem to be a good choice
either.


>> Fourth Problem: heterogeneous data types (i.e. castings)
>> The input image type, the output image type, and the internal pixel type
>> may all be different. That's why the code contain so many static_casts.
>>
>> Alas a static_cast<> on pixels will induce the creation of new pixel values.
>> This is contrary to the purpose of this patch.
>> Copy constructors and assignment operators already support on-the-fly
>> implicit static_casting.
>> We still need to be able to require casting only when it's required.
>> That's where the new function CastInto(), MoveInto() and As() come into
>> rescue.
> 
> So compiler's are not intelligent to make a static_cast<> a no-op when
> the types are the same?

Unfortunately, it doesn't seem so. Check
http://stackoverflow.com/questions/19106826/can-static-cast-to-same-type-introduce-runtime-overhead

Moreover, in the case of converting VLV<double> to VLV<int>, with a
static_cast, we'll force the creation of a new variable which is what I
striving to avoid.

Hence the new helper functions that'll use the converting assignment
operators in case of VLV, or static_cast in all other cases.

Regards,
-- 
Luc Hermitte
_______________________________________________
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http://www.kitware.com/opensource/opensource.html

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From matt.mccormick at kitware.com  Mon Nov 16 10:11:11 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 16 Nov 2015 10:11:11 -0500
Subject: [ITK] [ITK-users] Compile ITK for iPhone
In-Reply-To: <1446880952822-7588149.post@n2.nabble.com>
References: <1446685276695-7588136.post@n2.nabble.com>
 <1446819343470-7588145.post@n2.nabble.com>
 <CALzTN-RRRvu0yPGVCvBFXpcaTWdA8u0DsTQmrGbSU-42NNiDaA@mail.gmail.com>
 <1446880952822-7588149.post@n2.nabble.com>
Message-ID: <CALzTN-SYR1crYUMPFte3PO8aLR1UcCtcaP4P76iijKhm2x4d8A@mail.gmail.com>

Hi Yassin,

> The CMake warning about MacOSX10.10.sdk does not exist solved by,
>
> -First go to
> "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs"
> to find out if the SDK is there or not, i found elder version
> MacOSX10.9.sdk. So after run "cmake -GXcode ITK-Source_Dir" and generate the
> build files you have to change the CMakeCache.txt  "CMAKE_OSX_SYSROOT:PATH="
> to your current SDK version and then run "cmake -GXcode ITK-Source_Dir"
> again and the warning won't show.

This could be set by passing
-DCMAKE_OSX_SYSROOT=/your/current/sdk/path on the command line when
configuring with CMake.


> -The "vnl_math.cxx" generated in the build.

What is the issue here?


> -- But I face another problem with "vnl_math.cxx" when i added the "#define
> finite(x) ? ? __inline_isfinited((double)x)" line as mention in the
> tutorial,  error with "Expected expression" found and i can't run the
> project.

Which tutorial are you referring to?


Thanks,
Matt
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

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From matt.mccormick at kitware.com  Mon Nov 16 10:13:48 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 16 Nov 2015 10:13:48 -0500
Subject: [ITK] [ITK-dev]  2D/3D registration in v4
In-Reply-To: <56469C75.3030102@gmail.com>
References: <56453F31.5010206@gmail.com>
 <CAKKNfuJmQ65G_D4ishVM6JoMmWivR7GB1DCpHYKsP_3QhQEukA@mail.gmail.com>
 <5645503D.9030808@gmail.com>
 <CALzTN-ShQU=80WwHOc+3tE92G8VckEhwqTLXyxnSC=v_cj3npw@mail.gmail.com>
 <56469C75.3030102@gmail.com>
Message-ID: <CALzTN-Qz7C9ki4B_a1-iJG-dBdO92_kN2p=e9XuC=a341R4+Mg@mail.gmail.com>

On Fri, Nov 13, 2015 at 9:29 PM, David Burns <david.mo.burns at gmail.com> wrote:
> Thanks Matt for your response.
>
> For now I will proceed using metrics that don't require gradients.
>
> At some point, it would be nice for the framework to handle 2D images in the
> 3D coordinate system.
>
> Should we log this issue as a bug?

Yes, please log an issue here:

  https://issues.itk.org


Thanks,
Matt
_______________________________________________
Powered by www.kitware.com

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http://www.kitware.com/opensource/opensource.html

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From ribaluigi at gmail.com  Mon Nov 16 10:17:41 2015
From: ribaluigi at gmail.com (Luigi Riba)
Date: Mon, 16 Nov 2015 16:17:41 +0100
Subject: [ITK] registration - memory concerns
In-Reply-To: <CAKKNfuKdPXKPKK2ovrY9pywnJ87DV9Puy+HEHNBoBMTP8ybTGw@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
 <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
 <CAJaJUhNMdRhM4JUvbk2RnbJSbn2CQm2c1q+B+S8VqVNzPh6-qw@mail.gmail.com>
 <CAKKNfuKdPXKPKK2ovrY9pywnJ87DV9Puy+HEHNBoBMTP8ybTGw@mail.gmail.com>
Message-ID: <CAJaJUhOKpLnmvr-RiO75-k42VmGoRXm5dyX_KsRpADRRPdr3Rw@mail.gmail.com>

Dear Matias,

thank you very much for your quick reply.

Unfortunately, I didn't have time yet to test it. Anyhow, could you please
tell me the rationale behind it?

In my code:


   1. I read two grayscale 16 bit .mhd images. To read them I define the
   IOPixelTyep as unsigned short;
   2. I cast them to the "operational" type called PixelType as float
   3. I define all the registration objects templated on float.

Why should I cast my images to PixelType == signed short?

Thanks in advance for the support,
Luigi





2015-11-10 15:45 GMT+01:00 Matias Montroull <matimontg at gmail.com>:

> try this:
> typedef  signed short  PixelType;
>
>
> El mar., 10 de nov. de 2015 a la(s) 11:36 a. m., Luigi Riba <
> ribaluigi at gmail.com> escribi?:
>
>> Dear Matt,
>>
>> I have tried following your suggestion but, unfortunately, it didn't work
>> out.
>>
>> In particular:
>>
>>    1. I read a pair of uint16 images;
>>    2. I cast them to float pixel type via the CastImageFilter;
>>    3. I change the TInternalComputationValueType for the metric, the
>>    optimizer, the transform and the registration doing something like:
>>
>> const unsigned int Dimension = 3;
>>
>> typedef float PixelType;
>>
>> typedef unsigned short IOPixelType;
>>>
>> typedef itk::Image<IOPixelType, Dimension> IOImageType;
>>
>> typedef itk::Image<PixelType, Dimension> ImageType;
>>
>> typedef itk::AffineTransform<float, Dimension > TransformType;
>>
>> typedef itk::RegularStepGradientDescentOptimizerv4<float> OptimizerType;
>>
>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType,
>>> ImageType,ImageType,float> MetricType;
>>
>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>>> TransformType> RegistrationType;
>>
>> typedef itk::ResampleImageFilter<IOImageType, IOImageType, float,float>
>>> ResampleFilterType;
>>
>>
>>
>>
>>
>> I have put one memory probe before the registration procedure and one
>> afterwards of it. In the "double" case and in the "float" case I've seen
>> the same memory consumption.
>>
>> Am I missing something? Are there other things I should change in my code?
>>
>> Thanks again for the support,
>> Luigi
>>
>>
>>
>> 2015-11-09 17:23 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:
>>
>>> Hi Luigi,
>>>
>>> The type of optimizer should not have too large of an impact on memory
>>> consumption.  Using a gradient-free optimizer may help slightly, but
>>> try changing the pixel type of the input images or, if possible, the
>>> parameter type of the transformation, from double to float.
>>>
>>> HTH,
>>> Matt
>>>
>>> On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <ribaluigi at gmail.com> wrote:
>>> > Dear all,
>>> >
>>> > I am registering a couple of volumes with ITK 4 on windows 7 64 bit.
>>> >
>>> > I wrote a code based on the affine transformation, with the mean square
>>> > error metric and the RegularStepGradientDescentOptimizerv4.
>>> Unfortunately,
>>> > the memory usage is pretty high.
>>> >
>>> > I have checked memory consumption with the itkMemoryProbe and, after
>>> looking
>>> > around on previous mailing list messages I have decided to try with a
>>> > gradient free optimizer like the Nelder-Mead one.
>>> >
>>> > So I have rewrote the code using the AmoebaOptimizerV4 and I have
>>> continued
>>> > monitoring the memory consumption via MemoryProbe. Unfortunately, it
>>> seems
>>> > that nothing has changed. Is this working as expected? If this is the
>>> case,
>>> > do you have any suggestion to gave me in order to reduce the memory
>>> > consumption of the code?
>>> >
>>> > Thanks in advance for the help.
>>> >
>>> > Best,
>>> >
>>> > Luigi
>>> >
>>> > _______________________________________________
>>> > Community mailing list
>>> > Community at itk.org
>>> > http://public.kitware.com/mailman/listinfo/community
>>> >
>>>
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>>
> --
> Matias
>
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From dzenanz at gmail.com  Mon Nov 16 10:27:27 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Mon, 16 Nov 2015 10:27:27 -0500
Subject: [ITK] [ITK-dev] BUILD_EXAMPLES default to OFF
In-Reply-To: <D8AE99EF-8BF1-4BEA-B743-DE9497F31A49@uiowa.edu>
References: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>
 <D8AE99EF-8BF1-4BEA-B743-DE9497F31A49@uiowa.edu>
Message-ID: <CAPf2UMTf35WqAAA7o1eAbL-prwgXipg4eg4p_W8_49r0bq_TCA@mail.gmail.com>

+1

On Fri, Nov 13, 2015 at 7:02 PM, Johnson, Hans J <hans-johnson at uiowa.edu>
wrote:

> +1 too.
>
>
>
>
>
> On 11/13/15, 5:46 PM, "Insight-developers on behalf of Matt McCormick" <
> insight-developers-bounces at itk.org on behalf of matt.mccormick at kitware.com>
> wrote:
>
> >Hi folks,
> >
> >In order to improve the first impressions of new users of the toolkit,
> >I would like change the default BUILD_EXAMPLES build configuration to
> >OFF.  This will decrease the default build time, and it the reduced
> >number of targets will help with Visual Studio builds.
> >
> >When developing, it is nice to have BUILD_EXAMPLES OFF too, at least
> >at first, to decrease build time.
> >
> >We would have to ensure that all dashboard builds turn BUILD_EXAMPLES ON.
> >
> >Thoughts?
> >
> >Thanks,
> >Matt
> >_______________________________________________
> >Powered by www.kitware.com
> >
> >Visit other Kitware open-source projects at
> >http://www.kitware.com/opensource/opensource.html
> >
> >Kitware offers ITK Training Courses, for more information visit:
> >http://kitware.com/products/protraining.php
> >
> >Please keep messages on-topic and check the ITK FAQ at:
> >http://www.itk.org/Wiki/ITK_FAQ
> >
> >Follow this link to subscribe/unsubscribe:
> >http://public.kitware.com/mailman/listinfo/insight-developers
>
>
> ________________________________
> Notice: This UI Health Care e-mail (including attachments) is covered by
> the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is
> confidential and may be legally privileged.  If you are not the intended
> recipient, you are hereby notified that any retention, dissemination,
> distribution, or copying of this communication is strictly prohibited.
> Please reply to the sender that you have received the message in error,
> then delete it.  Thank you.
> ________________________________
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
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>
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_______________________________________________
Powered by www.kitware.com

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http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
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From dzenanz at gmail.com  Mon Nov 16 10:30:34 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Mon, 16 Nov 2015 10:30:34 -0500
Subject: [ITK] registration - memory concerns
In-Reply-To: <CAJaJUhOKpLnmvr-RiO75-k42VmGoRXm5dyX_KsRpADRRPdr3Rw@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
 <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
 <CAJaJUhNMdRhM4JUvbk2RnbJSbn2CQm2c1q+B+S8VqVNzPh6-qw@mail.gmail.com>
 <CAKKNfuKdPXKPKK2ovrY9pywnJ87DV9Puy+HEHNBoBMTP8ybTGw@mail.gmail.com>
 <CAJaJUhOKpLnmvr-RiO75-k42VmGoRXm5dyX_KsRpADRRPdr3Rw@mail.gmail.com>
Message-ID: <CAPf2UMRVnvOJrcE0w0Q+ngM2N=JCg1bcZJ65Mxz-g2P-BR5DSA@mail.gmail.com>

I believe Matias thought that your original pixel type was signed short.

So just use the images you read as unsigned short (set them as input to the
registration), and don't make another copy of the images by casting them to
float.

HTH

On Mon, Nov 16, 2015 at 10:17 AM, Luigi Riba <ribaluigi at gmail.com> wrote:

> Dear Matias,
>
> thank you very much for your quick reply.
>
> Unfortunately, I didn't have time yet to test it. Anyhow, could you please
> tell me the rationale behind it?
>
> In my code:
>
>
>    1. I read two grayscale 16 bit .mhd images. To read them I define the
>    IOPixelTyep as unsigned short;
>    2. I cast them to the "operational" type called PixelType as float
>    3. I define all the registration objects templated on float.
>
> Why should I cast my images to PixelType == signed short?
>
> Thanks in advance for the support,
> Luigi
>
>
>
>
>
> 2015-11-10 15:45 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
>
>> try this:
>> typedef  signed short  PixelType;
>>
>>
>> El mar., 10 de nov. de 2015 a la(s) 11:36 a. m., Luigi Riba <
>> ribaluigi at gmail.com> escribi?:
>>
>>> Dear Matt,
>>>
>>> I have tried following your suggestion but, unfortunately, it didn't
>>> work out.
>>>
>>> In particular:
>>>
>>>    1. I read a pair of uint16 images;
>>>    2. I cast them to float pixel type via the CastImageFilter;
>>>    3. I change the TInternalComputationValueType for the metric, the
>>>    optimizer, the transform and the registration doing something like:
>>>
>>> const unsigned int Dimension = 3;
>>>
>>> typedef float PixelType;
>>>
>>> typedef unsigned short IOPixelType;
>>>>
>>> typedef itk::Image<IOPixelType, Dimension> IOImageType;
>>>
>>> typedef itk::Image<PixelType, Dimension> ImageType;
>>>
>>> typedef itk::AffineTransform<float, Dimension > TransformType;
>>>
>>> typedef itk::RegularStepGradientDescentOptimizerv4<float> OptimizerType;
>>>
>>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType,
>>>> ImageType,ImageType,float> MetricType;
>>>
>>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>>>> TransformType> RegistrationType;
>>>
>>> typedef itk::ResampleImageFilter<IOImageType, IOImageType, float,float>
>>>> ResampleFilterType;
>>>
>>>
>>>
>>>
>>>
>>> I have put one memory probe before the registration procedure and one
>>> afterwards of it. In the "double" case and in the "float" case I've seen
>>> the same memory consumption.
>>>
>>> Am I missing something? Are there other things I should change in my
>>> code?
>>>
>>> Thanks again for the support,
>>> Luigi
>>>
>>>
>>>
>>> 2015-11-09 17:23 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:
>>>
>>>> Hi Luigi,
>>>>
>>>> The type of optimizer should not have too large of an impact on memory
>>>> consumption.  Using a gradient-free optimizer may help slightly, but
>>>> try changing the pixel type of the input images or, if possible, the
>>>> parameter type of the transformation, from double to float.
>>>>
>>>> HTH,
>>>> Matt
>>>>
>>>> On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <ribaluigi at gmail.com>
>>>> wrote:
>>>> > Dear all,
>>>> >
>>>> > I am registering a couple of volumes with ITK 4 on windows 7 64 bit.
>>>> >
>>>> > I wrote a code based on the affine transformation, with the mean
>>>> square
>>>> > error metric and the RegularStepGradientDescentOptimizerv4.
>>>> Unfortunately,
>>>> > the memory usage is pretty high.
>>>> >
>>>> > I have checked memory consumption with the itkMemoryProbe and, after
>>>> looking
>>>> > around on previous mailing list messages I have decided to try with a
>>>> > gradient free optimizer like the Nelder-Mead one.
>>>> >
>>>> > So I have rewrote the code using the AmoebaOptimizerV4 and I have
>>>> continued
>>>> > monitoring the memory consumption via MemoryProbe. Unfortunately, it
>>>> seems
>>>> > that nothing has changed. Is this working as expected? If this is the
>>>> case,
>>>> > do you have any suggestion to gave me in order to reduce the memory
>>>> > consumption of the code?
>>>> >
>>>> > Thanks in advance for the help.
>>>> >
>>>> > Best,
>>>> >
>>>> > Luigi
>>>> >
>>>> > _______________________________________________
>>>> > Community mailing list
>>>> > Community at itk.org
>>>> > http://public.kitware.com/mailman/listinfo/community
>>>> >
>>>>
>>> _______________________________________________
>>> Community mailing list
>>> Community at itk.org
>>> http://public.kitware.com/mailman/listinfo/community
>>>
>> --
>> Matias
>>
>
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
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From dzenanz at gmail.com  Mon Nov 16 10:33:34 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Mon, 16 Nov 2015 10:33:34 -0500
Subject: [ITK] Convert obj to mha
In-Reply-To: <CAOZihbeFrDx0uTO3qmzJ_7ck6Fgc=rr4xFRLyNy5Ybq+Haq1Aw@mail.gmail.com>
References: <CAOZihbeFrDx0uTO3qmzJ_7ck6Fgc=rr4xFRLyNy5Ybq+Haq1Aw@mail.gmail.com>
Message-ID: <CAPf2UMS5+YCp2MkKxhTmgZ8Ksv86qCFU5txY1rM0=SPO+tr5kg@mail.gmail.com>

Yes!

Filter:
http://www.itk.org/Doxygen/html/classitk_1_1TriangleMeshToBinaryImageFilter.html
Example:
http://itk.org/ITKExamples/src/Core/Mesh/ConvertTriangleMeshToBinaryImage/Documentation.html

Regards,
D?enan

On Mon, Nov 16, 2015 at 7:50 AM, Constantinus Spanakis <
c.spanakis83 at gmail.com> wrote:

> Hello. Is it possible to convert an .obj/x3d file to mha in ITK?
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
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From dzenanz at gmail.com  Mon Nov 16 10:40:50 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Mon, 16 Nov 2015 10:40:50 -0500
Subject: [ITK] HELP REQUEST
In-Reply-To: <AM3PR01MB1187EDC7CAF5DAA10348FAD0DE1F0@AM3PR01MB1187.eurprd01.prod.exchangelabs.com>
References: <AM3PR01MB1187EDC7CAF5DAA10348FAD0DE1F0@AM3PR01MB1187.eurprd01.prod.exchangelabs.com>
Message-ID: <CAPf2UMS5Sp-wWywy=2E78GoY9GkSrzhbVT+ow8KrmgyojOgGnQ@mail.gmail.com>

Hi Roberta,

welcome to the community! You have to use CMake to generate a project for
some compiler, and then use that compiler to compile the library. I
recommend to use Visual Studio community edition
<https://www.visualstudio.com/en-us/downloads/download-visual-studio-vs.aspx>
(version 2013 or 2015). Very few Windows users use MinGW, so almost no one
can help you when you run into trouble.

Regards,
D?enan

On Sun, Nov 15, 2015 at 12:10 PM, ROBERTA PALAMA' <ROBERTAPALAMA at hotmail.it>
wrote:

> Hi,
>
> I'm Roberta. I'm a student. I study Biomedical Engineering at the
> Politecnico of Turin. I'm working to my master thesis. It's about a 3D
> recostruction of a coronary artery biforcation. I have 9 films and I have
> extracted from every film the most significant frame. So I have 9 frames. I
> want to use RTK to try to do this recostruction.
>
> For the software installation I have followed the online guide (
> http://wiki.openrtk.org/index.php/Main_Page).
> The first part of the guide is the installation of the project ITK, but I
> 'm having problems to complete the compilation.
>
> On my pc I have Windows 8.1. One of my friends ( that reads us in CC) is
> helping me in this but we have some problems to compile the sotware. In his
> pc (Windows) he succeeds to the the set up and to generate the cmake file (
> using Cmake ver3.4.0 ).
>
> After we have created the "cmake file" we have tryed to compile the source
> codes but the second error appares again, as shown in the figure in
> attachment.
> What kind of softwares do you suggest me to create and compile everything?
>
> Thanks for your kind attention!!! It's so much important for me so I hope
> yuo can give me a respons.
>
> Best regards.
>
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
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From matimontg at gmail.com  Mon Nov 16 10:53:20 2015
From: matimontg at gmail.com (Matias Montroull)
Date: Mon, 16 Nov 2015 15:53:20 +0000
Subject: [ITK] registration - memory concerns
In-Reply-To: <CAPf2UMRVnvOJrcE0w0Q+ngM2N=JCg1bcZJ65Mxz-g2P-BR5DSA@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
 <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
 <CAJaJUhNMdRhM4JUvbk2RnbJSbn2CQm2c1q+B+S8VqVNzPh6-qw@mail.gmail.com>
 <CAKKNfuKdPXKPKK2ovrY9pywnJ87DV9Puy+HEHNBoBMTP8ybTGw@mail.gmail.com>
 <CAJaJUhOKpLnmvr-RiO75-k42VmGoRXm5dyX_KsRpADRRPdr3Rw@mail.gmail.com>
 <CAPf2UMRVnvOJrcE0w0Q+ngM2N=JCg1bcZJ65Mxz-g2P-BR5DSA@mail.gmail.com>
Message-ID: <CAKKNfuLunxE4SPyj9dqhZc_ihX80v_NkH9sixZph-7pgQmWR_A@mail.gmail.com>

That was my assumption Luigi

El lun., 16 de nov. de 2015 a la(s) 12:30 p. m., D?enan Zuki? <
dzenanz at gmail.com> escribi?:

> I believe Matias thought that your original pixel type was signed short.
>
> So just use the images you read as unsigned short (set them as input to
> the registration), and don't make another copy of the images by casting
> them to float.
>
> HTH
>
> On Mon, Nov 16, 2015 at 10:17 AM, Luigi Riba <ribaluigi at gmail.com> wrote:
>
>> Dear Matias,
>>
>> thank you very much for your quick reply.
>>
>> Unfortunately, I didn't have time yet to test it. Anyhow, could you
>> please tell me the rationale behind it?
>>
>> In my code:
>>
>>
>>    1. I read two grayscale 16 bit .mhd images. To read them I define the
>>    IOPixelTyep as unsigned short;
>>    2. I cast them to the "operational" type called PixelType as float
>>    3. I define all the registration objects templated on float.
>>
>> Why should I cast my images to PixelType == signed short?
>>
>> Thanks in advance for the support,
>> Luigi
>>
>>
>>
>>
>>
>> 2015-11-10 15:45 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
>>
>>> try this:
>>> typedef  signed short  PixelType;
>>>
>>>
>>> El mar., 10 de nov. de 2015 a la(s) 11:36 a. m., Luigi Riba <
>>> ribaluigi at gmail.com> escribi?:
>>>
>>>> Dear Matt,
>>>>
>>>> I have tried following your suggestion but, unfortunately, it didn't
>>>> work out.
>>>>
>>>> In particular:
>>>>
>>>>    1. I read a pair of uint16 images;
>>>>    2. I cast them to float pixel type via the CastImageFilter;
>>>>    3. I change the TInternalComputationValueType for the metric, the
>>>>    optimizer, the transform and the registration doing something like:
>>>>
>>>> const unsigned int Dimension = 3;
>>>>
>>>> typedef float PixelType;
>>>>
>>>> typedef unsigned short IOPixelType;
>>>>>
>>>> typedef itk::Image<IOPixelType, Dimension> IOImageType;
>>>>
>>>> typedef itk::Image<PixelType, Dimension> ImageType;
>>>>
>>>> typedef itk::AffineTransform<float, Dimension > TransformType;
>>>>
>>>> typedef itk::RegularStepGradientDescentOptimizerv4<float> OptimizerType;
>>>>
>>>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType,
>>>>> ImageType,ImageType,float> MetricType;
>>>>
>>>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>>>>> TransformType> RegistrationType;
>>>>
>>>> typedef itk::ResampleImageFilter<IOImageType, IOImageType, float,float>
>>>>> ResampleFilterType;
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> I have put one memory probe before the registration procedure and one
>>>> afterwards of it. In the "double" case and in the "float" case I've seen
>>>> the same memory consumption.
>>>>
>>>> Am I missing something? Are there other things I should change in my
>>>> code?
>>>>
>>>> Thanks again for the support,
>>>> Luigi
>>>>
>>>>
>>>>
>>>> 2015-11-09 17:23 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:
>>>>
>>>>> Hi Luigi,
>>>>>
>>>>> The type of optimizer should not have too large of an impact on memory
>>>>> consumption.  Using a gradient-free optimizer may help slightly, but
>>>>> try changing the pixel type of the input images or, if possible, the
>>>>> parameter type of the transformation, from double to float.
>>>>>
>>>>> HTH,
>>>>> Matt
>>>>>
>>>>> On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <ribaluigi at gmail.com>
>>>>> wrote:
>>>>> > Dear all,
>>>>> >
>>>>> > I am registering a couple of volumes with ITK 4 on windows 7 64 bit.
>>>>> >
>>>>> > I wrote a code based on the affine transformation, with the mean
>>>>> square
>>>>> > error metric and the RegularStepGradientDescentOptimizerv4.
>>>>> Unfortunately,
>>>>> > the memory usage is pretty high.
>>>>> >
>>>>> > I have checked memory consumption with the itkMemoryProbe and, after
>>>>> looking
>>>>> > around on previous mailing list messages I have decided to try with a
>>>>> > gradient free optimizer like the Nelder-Mead one.
>>>>> >
>>>>> > So I have rewrote the code using the AmoebaOptimizerV4 and I have
>>>>> continued
>>>>> > monitoring the memory consumption via MemoryProbe. Unfortunately, it
>>>>> seems
>>>>> > that nothing has changed. Is this working as expected? If this is
>>>>> the case,
>>>>> > do you have any suggestion to gave me in order to reduce the memory
>>>>> > consumption of the code?
>>>>> >
>>>>> > Thanks in advance for the help.
>>>>> >
>>>>> > Best,
>>>>> >
>>>>> > Luigi
>>>>> >
>>>>> > _______________________________________________
>>>>> > Community mailing list
>>>>> > Community at itk.org
>>>>> > http://public.kitware.com/mailman/listinfo/community
>>>>> >
>>>>>
>>>> _______________________________________________
>>>> Community mailing list
>>>> Community at itk.org
>>>> http://public.kitware.com/mailman/listinfo/community
>>>>
>>> --
>>> Matias
>>>
>>
>>
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>>
>>
> --
Matias
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From ribaluigi at gmail.com  Mon Nov 16 10:55:37 2015
From: ribaluigi at gmail.com (Luigi Riba)
Date: Mon, 16 Nov 2015 16:55:37 +0100
Subject: [ITK] registration - memory concerns
In-Reply-To: <CAKKNfuLunxE4SPyj9dqhZc_ihX80v_NkH9sixZph-7pgQmWR_A@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
 <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
 <CAJaJUhNMdRhM4JUvbk2RnbJSbn2CQm2c1q+B+S8VqVNzPh6-qw@mail.gmail.com>
 <CAKKNfuKdPXKPKK2ovrY9pywnJ87DV9Puy+HEHNBoBMTP8ybTGw@mail.gmail.com>
 <CAJaJUhOKpLnmvr-RiO75-k42VmGoRXm5dyX_KsRpADRRPdr3Rw@mail.gmail.com>
 <CAPf2UMRVnvOJrcE0w0Q+ngM2N=JCg1bcZJ65Mxz-g2P-BR5DSA@mail.gmail.com>
 <CAKKNfuLunxE4SPyj9dqhZc_ihX80v_NkH9sixZph-7pgQmWR_A@mail.gmail.com>
Message-ID: <CAJaJUhNCy1knRBRVx2rkpSjYVDw4W_s+ax8osxArRAWtrvkxsQ@mail.gmail.com>

Dear D?enan and Matias,

thank you very much for the help.

I'll test your suggestion and I'll post back the results for the community.

Best,

Luigi

2015-11-16 16:53 GMT+01:00 Matias Montroull <matimontg at gmail.com>:

> That was my assumption Luigi
>
> El lun., 16 de nov. de 2015 a la(s) 12:30 p. m., D?enan Zuki? <
> dzenanz at gmail.com> escribi?:
>
>> I believe Matias thought that your original pixel type was signed short.
>>
>> So just use the images you read as unsigned short (set them as input to
>> the registration), and don't make another copy of the images by casting
>> them to float.
>>
>> HTH
>>
>> On Mon, Nov 16, 2015 at 10:17 AM, Luigi Riba <ribaluigi at gmail.com> wrote:
>>
>>> Dear Matias,
>>>
>>> thank you very much for your quick reply.
>>>
>>> Unfortunately, I didn't have time yet to test it. Anyhow, could you
>>> please tell me the rationale behind it?
>>>
>>> In my code:
>>>
>>>
>>>    1. I read two grayscale 16 bit .mhd images. To read them I define
>>>    the IOPixelTyep as unsigned short;
>>>    2. I cast them to the "operational" type called PixelType as float
>>>    3. I define all the registration objects templated on float.
>>>
>>> Why should I cast my images to PixelType == signed short?
>>>
>>> Thanks in advance for the support,
>>> Luigi
>>>
>>>
>>>
>>>
>>>
>>> 2015-11-10 15:45 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
>>>
>>>> try this:
>>>> typedef  signed short  PixelType;
>>>>
>>>>
>>>> El mar., 10 de nov. de 2015 a la(s) 11:36 a. m., Luigi Riba <
>>>> ribaluigi at gmail.com> escribi?:
>>>>
>>>>> Dear Matt,
>>>>>
>>>>> I have tried following your suggestion but, unfortunately, it didn't
>>>>> work out.
>>>>>
>>>>> In particular:
>>>>>
>>>>>    1. I read a pair of uint16 images;
>>>>>    2. I cast them to float pixel type via the CastImageFilter;
>>>>>    3. I change the TInternalComputationValueType for the metric, the
>>>>>    optimizer, the transform and the registration doing something like:
>>>>>
>>>>> const unsigned int Dimension = 3;
>>>>>
>>>>> typedef float PixelType;
>>>>>
>>>>> typedef unsigned short IOPixelType;
>>>>>>
>>>>> typedef itk::Image<IOPixelType, Dimension> IOImageType;
>>>>>
>>>>> typedef itk::Image<PixelType, Dimension> ImageType;
>>>>>
>>>>> typedef itk::AffineTransform<float, Dimension > TransformType;
>>>>>
>>>>> typedef itk::RegularStepGradientDescentOptimizerv4<float>
>>>>>> OptimizerType;
>>>>>
>>>>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType,
>>>>>> ImageType,ImageType,float> MetricType;
>>>>>
>>>>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>>>>>> TransformType> RegistrationType;
>>>>>
>>>>> typedef itk::ResampleImageFilter<IOImageType, IOImageType,
>>>>>> float,float> ResampleFilterType;
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> I have put one memory probe before the registration procedure and one
>>>>> afterwards of it. In the "double" case and in the "float" case I've seen
>>>>> the same memory consumption.
>>>>>
>>>>> Am I missing something? Are there other things I should change in my
>>>>> code?
>>>>>
>>>>> Thanks again for the support,
>>>>> Luigi
>>>>>
>>>>>
>>>>>
>>>>> 2015-11-09 17:23 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>
>>>>> :
>>>>>
>>>>>> Hi Luigi,
>>>>>>
>>>>>> The type of optimizer should not have too large of an impact on memory
>>>>>> consumption.  Using a gradient-free optimizer may help slightly, but
>>>>>> try changing the pixel type of the input images or, if possible, the
>>>>>> parameter type of the transformation, from double to float.
>>>>>>
>>>>>> HTH,
>>>>>> Matt
>>>>>>
>>>>>> On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <ribaluigi at gmail.com>
>>>>>> wrote:
>>>>>> > Dear all,
>>>>>> >
>>>>>> > I am registering a couple of volumes with ITK 4 on windows 7 64 bit.
>>>>>> >
>>>>>> > I wrote a code based on the affine transformation, with the mean
>>>>>> square
>>>>>> > error metric and the RegularStepGradientDescentOptimizerv4.
>>>>>> Unfortunately,
>>>>>> > the memory usage is pretty high.
>>>>>> >
>>>>>> > I have checked memory consumption with the itkMemoryProbe and,
>>>>>> after looking
>>>>>> > around on previous mailing list messages I have decided to try with
>>>>>> a
>>>>>> > gradient free optimizer like the Nelder-Mead one.
>>>>>> >
>>>>>> > So I have rewrote the code using the AmoebaOptimizerV4 and I have
>>>>>> continued
>>>>>> > monitoring the memory consumption via MemoryProbe. Unfortunately,
>>>>>> it seems
>>>>>> > that nothing has changed. Is this working as expected? If this is
>>>>>> the case,
>>>>>> > do you have any suggestion to gave me in order to reduce the memory
>>>>>> > consumption of the code?
>>>>>> >
>>>>>> > Thanks in advance for the help.
>>>>>> >
>>>>>> > Best,
>>>>>> >
>>>>>> > Luigi
>>>>>> >
>>>>>> > _______________________________________________
>>>>>> > Community mailing list
>>>>>> > Community at itk.org
>>>>>> > http://public.kitware.com/mailman/listinfo/community
>>>>>> >
>>>>>>
>>>>> _______________________________________________
>>>>> Community mailing list
>>>>> Community at itk.org
>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>
>>>> --
>>>> Matias
>>>>
>>>
>>>
>>> _______________________________________________
>>> Community mailing list
>>> Community at itk.org
>>> http://public.kitware.com/mailman/listinfo/community
>>>
>>>
>> --
> Matias
>
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From matt.mccormick at kitware.com  Mon Nov 16 13:44:28 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 16 Nov 2015 13:44:28 -0500
Subject: [ITK] [ITK-dev] About the last optimization
	on	VariableLengthVector
In-Reply-To: <5649E058.5010905@c-s.fr>
References: <5644C9C7.6030603@c-s.fr>
 <CALzTN-QDO_6NPORBSrLSTNacwyTUxv_niYOkVz2nNkdcaC-GRQ@mail.gmail.com>
 <5649E058.5010905@c-s.fr>
Message-ID: <CALzTN-R7y2QXKf=fJG6R9ON17hQJkVEJq+1nbmG=WGVMsEa6ig@mail.gmail.com>

On Mon, Nov 16, 2015 at 8:55 AM, Luc Hermitte <luc.hermitte at c-s.fr> wrote:

>>> Third Problem: Local Variables
>>> 3.1- Auxiliary variables
>>> Some algorithms (e.g. BSplines interpolations) require dynamic data
>>> structures like matrices. This implies allocation at each iteration.
>>> This particular problem isn't addressed in this patch. The solution to
>>> 3.2 will help to provide an solution.
>>>
>>> 3.2- Factorized computations
>>> [...]
>>>
>>> We need a C++98 solution.
>>> The only way I see is to rely on cached variables.
>>> This means that the ImageFunctions are no longer [[pure]] functions :
>>> they'll mutate some variables that we want to allocate once per
>>> ImageFunction and ... per thread.
>>> Indeed the ImageFunctions shall be reentrant.
>>>
>>> I was first hoping to use thread_local variables. Alas they cannot be
>>> non-static attributes. This is a problem: if I'm not wrong, a same
>>> ImageFunction could be used multiple times in a same processing chain.
>>>
>>> We still have a simple solution, but it requires a second modification
>>> to Evaluate() signature: we need to pass the current ThreadId.
>>>
>>> The new drawback: code migration requires more work. We can not write
>>> Evaluate() in terms of EvaluateNoCopy() as the latter requires the
>>> threadId that the former doesn't know. This is the reason why I expect
>>> the tests to fail.
>>> Instead we need to convert all client code (like the WarpImageFilter)
>>> and have the default implementation of EvaluateNoCopy() to call the
>>> already written and not yet converted Evalutate().
>>
>> This would be messy, and it would not work very well since the
>> ImageFunction's are not involved in orchestration of the threading.
>> Instead, it would be better to make the necessary auxiliary variables
>> private variables.  Parallel code that uses ImageFunction's should
>> create one ImageFunction instance per thread.
>
> I'm afraid that with this choice, code that currently works well in
> parallel won't work anymore. End users will need to rewrite all uses of
> image functions in order to use them in MT code. And I guess we will
> also need to rewrite several test cases.
>
> Unless we duplicate the Evaluate() code : i.e. unless we keep the
> current version, and we add the new and optimized rewrite (for VLV in
> most cases, or for every kind of variables in some other cases (e.g.
> BSpline interpolation where caching matrix allocations helps reduce
> computation time))
> Duplicating image function algorithms doesn't seem to be a good choice
> either.

Right. Yes, this will not be maintainable.

A feasible way forward seems to use a C++11 code path when available
that has enhanced performance (i.e., use auto with C++11).  The C++98
version will not be as fast, but it will work. ITK leans towards
readability, maintainability, and program-ability over performance in
cases like this.


>>> Fourth Problem: heterogeneous data types (i.e. castings)
>>> The input image type, the output image type, and the internal pixel type
>>> may all be different. That's why the code contain so many static_casts.
>>>
>>> Alas a static_cast<> on pixels will induce the creation of new pixel values.
>>> This is contrary to the purpose of this patch.
>>> Copy constructors and assignment operators already support on-the-fly
>>> implicit static_casting.
>>> We still need to be able to require casting only when it's required.
>>> That's where the new function CastInto(), MoveInto() and As() come into
>>> rescue.
>>
>> So compiler's are not intelligent to make a static_cast<> a no-op when
>> the types are the same?
>
> Unfortunately, it doesn't seem so. Check
> http://stackoverflow.com/questions/19106826/can-static-cast-to-same-type-introduce-runtime-overhead

Thanks for the link. That thread seems to indicate that POD types are
not an issue, and non-POD types may not be an issue outside of -O0.


> Moreover, in the case of converting VLV<double> to VLV<int>, with a
> static_cast, we'll force the creation of a new variable which is what I
> striving to avoid.
>
> Hence the new helper functions that'll use the converting assignment
> operators in case of VLV, or static_cast in all other cases.

Sounds reasonable.

What are the different definitions and uses for  CastInto(),
MoveInto(), and As()?


Thanks,
Matt
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From matt.mccormick at kitware.com  Mon Nov 16 15:13:10 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 16 Nov 2015 15:13:10 -0500
Subject: [ITK] [ITK-dev] BUILD_EXAMPLES default to OFF
In-Reply-To: <CAPf2UMTf35WqAAA7o1eAbL-prwgXipg4eg4p_W8_49r0bq_TCA@mail.gmail.com>
References: <CALzTN-Tn6nO6ER9f0PKR6RgJcWm4hsdgpZ4-oqTgym_krq1+kQ@mail.gmail.com>
 <D8AE99EF-8BF1-4BEA-B743-DE9497F31A49@uiowa.edu>
 <CAPf2UMTf35WqAAA7o1eAbL-prwgXipg4eg4p_W8_49r0bq_TCA@mail.gmail.com>
Message-ID: <CALzTN-S-MsL5TX8YNw4Lt+vMwodhD7dKsY=AQrep+viHsnYKqw@mail.gmail.com>

Patch:

  http://review.source.kitware.com/#/c/20399/

On Mon, Nov 16, 2015 at 10:27 AM, D?enan Zuki? <dzenanz at gmail.com> wrote:
> +1
>
> On Fri, Nov 13, 2015 at 7:02 PM, Johnson, Hans J <hans-johnson at uiowa.edu>
> wrote:
>>
>> +1 too.
>>
>>
>>
>>
>>
>> On 11/13/15, 5:46 PM, "Insight-developers on behalf of Matt McCormick"
>> <insight-developers-bounces at itk.org on behalf of matt.mccormick at kitware.com>
>> wrote:
>>
>> >Hi folks,
>> >
>> >In order to improve the first impressions of new users of the toolkit,
>> >I would like change the default BUILD_EXAMPLES build configuration to
>> >OFF.  This will decrease the default build time, and it the reduced
>> >number of targets will help with Visual Studio builds.
>> >
>> >When developing, it is nice to have BUILD_EXAMPLES OFF too, at least
>> >at first, to decrease build time.
>> >
>> >We would have to ensure that all dashboard builds turn BUILD_EXAMPLES ON.
>> >
>> >Thoughts?
>> >
>> >Thanks,
>> >Matt
>> >_______________________________________________
>> >Powered by www.kitware.com
>> >
>> >Visit other Kitware open-source projects at
>> >http://www.kitware.com/opensource/opensource.html
>> >
>> >Kitware offers ITK Training Courses, for more information visit:
>> >http://kitware.com/products/protraining.php
>> >
>> >Please keep messages on-topic and check the ITK FAQ at:
>> >http://www.itk.org/Wiki/ITK_FAQ
>> >
>> >Follow this link to subscribe/unsubscribe:
>> >http://public.kitware.com/mailman/listinfo/insight-developers
>>
>>
>> ________________________________
>> Notice: This UI Health Care e-mail (including attachments) is covered by
>> the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is
>> confidential and may be legally privileged.  If you are not the intended
>> recipient, you are hereby notified that any retention, dissemination,
>> distribution, or copying of this communication is strictly prohibited.
>> Please reply to the sender that you have received the message in error, then
>> delete it.  Thank you.
>> ________________________________
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>
>
_______________________________________________
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Kitware offers ITK Training Courses, for more information visit:
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From matt.mccormick at kitware.com  Mon Nov 16 16:42:58 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 16 Nov 2015 16:42:58 -0500
Subject: [ITK] [ITK-dev] ITK 4.9 release candidates approaching
Message-ID: <CALzTN-Rv4Oocu4xKY6KwGRjVZB8Y7N2-h9CPg4cqEDk0yzq+eA@mail.gmail.com>

Hi folks,

Per schedule, the first ITK 4.9 release candidate is scheduled to
start next week.  Please merge all reviewed and build robot verified
feature changes for 4.9 by the end of this week.

Thanks,
Matt
_______________________________________________
Powered by www.kitware.com

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From a.tunde.szilagyi at gmail.com  Mon Nov 16 17:40:17 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Mon, 16 Nov 2015 23:40:17 +0100
Subject: [ITK] Volunteers please? BUILD-ALL
Message-ID: <CAMeM8yavKCKKjw7WezfoXv9JiLmY9JA-QEiYeFOKzK1xniN7zA@mail.gmail.com>

Dear All,

I am running in circles with trying to build-all for the first time. I
finally managed to have the project with warning only from CMake and built
it with VS 14 2015 without errors. BUT I still does not result in the
modules I am supposed to receive in the bin/DEBUG folder. I have taken as
reference the tutorial ppt from the ITK website (Additional to the
suggested, I have played with turning ON/OFF certain modules. I would like
to understand what is going on.).

I am looking for someone who has experience in building the ITK Toolkit in
Win 10 64 bit. I would grant this person the right to temporary access my
computer via Team Viewer.

Many thanks in advance.
Tunde
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From luc.hermitte at c-s.fr  Tue Nov 17 03:46:44 2015
From: luc.hermitte at c-s.fr (Luc Hermitte)
Date: Tue, 17 Nov 2015 09:46:44 +0100
Subject: [ITK] [ITK-dev] About the last optimization on
 VariableLengthVector
In-Reply-To: <CALzTN-R7y2QXKf=fJG6R9ON17hQJkVEJq+1nbmG=WGVMsEa6ig@mail.gmail.com>
References: <5644C9C7.6030603@c-s.fr>
 <CALzTN-QDO_6NPORBSrLSTNacwyTUxv_niYOkVz2nNkdcaC-GRQ@mail.gmail.com>
 <5649E058.5010905@c-s.fr>
 <CALzTN-R7y2QXKf=fJG6R9ON17hQJkVEJq+1nbmG=WGVMsEa6ig@mail.gmail.com>
Message-ID: <564AE974.3030008@c-s.fr>

Le 16/11/2015 19:44, Matt McCormick a ?crit :
> On Mon, Nov 16, 2015 at 8:55 AM, Luc Hermitte <luc.hermitte at c-s.fr> wrote:
> 
>>>> Third Problem: Local Variables
>>>> 3.1- Auxiliary variables
>>>> Some algorithms (e.g. BSplines interpolations) require dynamic data
>>>> structures like matrices. This implies allocation at each iteration.
>>>> This particular problem isn't addressed in this patch. The solution to
>>>> 3.2 will help to provide an solution.
>>>>
>>>> 3.2- Factorized computations
>>>> [...]
>>>>
>>>> We need a C++98 solution.
>>>> The only way I see is to rely on cached variables.
>>>> This means that the ImageFunctions are no longer [[pure]] functions :
>>>> they'll mutate some variables that we want to allocate once per
>>>> ImageFunction and ... per thread.
>>>> Indeed the ImageFunctions shall be reentrant.
>>>>
>>>> I was first hoping to use thread_local variables. Alas they cannot be
>>>> non-static attributes. This is a problem: if I'm not wrong, a same
>>>> ImageFunction could be used multiple times in a same processing chain.
>>>>
>>>> We still have a simple solution, but it requires a second modification
>>>> to Evaluate() signature: we need to pass the current ThreadId.
>>>>
>>>> The new drawback: code migration requires more work. We can not write
>>>> Evaluate() in terms of EvaluateNoCopy() as the latter requires the
>>>> threadId that the former doesn't know. This is the reason why I expect
>>>> the tests to fail.
>>>> Instead we need to convert all client code (like the WarpImageFilter)
>>>> and have the default implementation of EvaluateNoCopy() to call the
>>>> already written and not yet converted Evalutate().
>>>
>>> This would be messy, and it would not work very well since the
>>> ImageFunction's are not involved in orchestration of the threading.
>>> Instead, it would be better to make the necessary auxiliary variables
>>> private variables.  Parallel code that uses ImageFunction's should
>>> create one ImageFunction instance per thread.
>>
>> I'm afraid that with this choice, code that currently works well in
>> parallel won't work anymore. End users will need to rewrite all uses of
>> image functions in order to use them in MT code. And I guess we will
>> also need to rewrite several test cases.
>>
>> Unless we duplicate the Evaluate() code : i.e. unless we keep the
>> current version, and we add the new and optimized rewrite (for VLV in
>> most cases, or for every kind of variables in some other cases (e.g.
>> BSpline interpolation where caching matrix allocations helps reduce
>> computation time))
>> Duplicating image function algorithms doesn't seem to be a good choice
>> either.
> 
> Right. Yes, this will not be maintainable.
> 
> A feasible way forward seems to use a C++11 code path when available
> that has enhanced performance (i.e., use auto with C++11).  The C++98
> version will not be as fast, but it will work. ITK leans towards
> readability, maintainability, and program-ability over performance in
> cases like this.

With this solution, we loose computation factorizations.

   auto p4 = p0 + (p1 - p0) * d0
   auto p5 = p2 + (p3 - p2) * d1
   output = p4 + (p5 - p4) * d2

p4 computations will be done twice on VLVs and std::valarrays.
// I suppose the dangling reference issue solved.

Using cached variables and introducing a new threadId parameter greatly
improve computation on VLV. But also on some other algorithms.

Readability and maintainability won't be that reduced.


>>>> Fourth Problem: heterogeneous data types (i.e. castings)
>>>> The input image type, the output image type, and the internal pixel type
>>>> may all be different. That's why the code contain so many static_casts.
>>>>
>>>> Alas a static_cast<> on pixels will induce the creation of new pixel values.
>>>> This is contrary to the purpose of this patch.
>>>> Copy constructors and assignment operators already support on-the-fly
>>>> implicit static_casting.
>>>> We still need to be able to require casting only when it's required.
>>>> That's where the new function CastInto(), MoveInto() and As() come into
>>>> rescue.
>>>
>>> So compiler's are not intelligent to make a static_cast<> a no-op when
>>> the types are the same?
>>
>> Unfortunately, it doesn't seem so. Check
>> http://stackoverflow.com/questions/19106826/can-static-cast-to-same-type-introduce-runtime-overhead
> 
> Thanks for the link. That thread seems to indicate that POD types are
> not an issue, and non-POD types may not be an issue outside of -O0.
> 
> 
>> Moreover, in the case of converting VLV<double> to VLV<int>, with a
>> static_cast, we'll force the creation of a new variable which is what I
>> striving to avoid.
>>
>> Hence the new helper functions that'll use the converting assignment
>> operators in case of VLV, or static_cast in all other cases.
> 
> Sounds reasonable.
> 
> What are the different definitions and uses for  CastInto(),
> MoveInto(), and As()?

MoveInto will try to swap() the content of two heavy variables like VLV
when both are of the same type and equivalent to lvalues. If they are
VLV but if their ValueTypes differ, the on-the-fly converting assignment
operator is used. Otherwise, static_cast is used.
The objective is not to use C++11 std::move as for the moment it isn't
implemented as a move-and-swap, but as a destructive move.

CastInto is to be used when swap cannot be used.
This is the case when one of the pixel is actually a proxy/pixel_view.
(i.e. when m_ManageMemory == false). Swapping pixels would alter the
input image, this is unacceptable. Hence, CastInto.

Both could be used independently of Expression Templates.

As<> produces an expression template (on VLV) that will eventually
execute a static_cast on each pixel component. On other types, it
becomes a simple static_cast.

--Luc
_______________________________________________
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From a.tunde.szilagyi at gmail.com  Tue Nov 17 05:14:32 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Tue, 17 Nov 2015 11:14:32 +0100
Subject: [ITK] ITK Toolkit?
Message-ID: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>

Hi Everyone,

I would be interested whether anyone has managed to build the ITK Toolkit
on Windows 10 64 bit with Microsoft VS 14 2015?

Many thanks.
Tunde
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From bakkari.abdelkhalek at hotmail.fr  Tue Nov 17 07:38:06 2015
From: bakkari.abdelkhalek at hotmail.fr (Abdelkhalek Bakkari)
Date: Tue, 17 Nov 2015 13:38:06 +0100
Subject: [ITK] [ITK-users] VTK edge Paint Brush
Message-ID: <DUB129-W641561D572DE99247A9E3E831D0@phx.gbl>

Dear ITK users,
I am trying to include the VTK edge -Paint Brush- to my interface.Could you tell me the steps of using VTK edge like in the test 1 of the following link :
http://vtkedge.sourcearchive.com/documentation/0.1.0-3/PaintbrushTest1_8cxx-source.html

Best regards, 		 	   		  
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From osubachev at gmail.com  Tue Nov 17 08:24:51 2015
From: osubachev at gmail.com (Oleg Subachev)
Date: Tue, 17 Nov 2015 18:24:51 +0500
Subject: [ITK] How to get to get image similarity metrics under .NET ?
Message-ID: <CAD0V+a2fhGDFbCg8wHC9+NZi8rda278_nhc2ETkTAXQZEQ5JXw@mail.gmail.com>

I need to get similarity metrics for 2D images under .NET.
According to ITK documentation
(http://www.itk.org/Doxygen/html/ImageSimilarityMetricsPage.html)
there are several Image To Image metrics available.
ITK itself contains corresponding methods.
But I cannot find those methods in SimpleITK :-(
There is SimpleITK.NormalizedCorrelation(Image, Image, Image) method,
but it seems to have nothing with similarity metrics.

How to get to get image similarity metrics under .NET ?

-- 
Best regards,

Oleg Subachev

From blowekamp at mail.nih.gov  Tue Nov 17 08:41:41 2015
From: blowekamp at mail.nih.gov (Bradley Lowekamp)
Date: Tue, 17 Nov 2015 08:41:41 -0500
Subject: [ITK] How to get to get image similarity metrics under .NET ?
In-Reply-To: <CAD0V+a2fhGDFbCg8wHC9+NZi8rda278_nhc2ETkTAXQZEQ5JXw@mail.gmail.com>
References: <CAD0V+a2fhGDFbCg8wHC9+NZi8rda278_nhc2ETkTAXQZEQ5JXw@mail.gmail.com>
Message-ID: <D885E0B0-F39F-4076-986E-A48115E8BD21@mail.nih.gov>

Hello,

You should look into SimpleITK's ImageRegistrationMethod::MetricEvaluate( Image, Image ) member function.

Here is a Python example of using the method, C# should be similar:

http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/63_Registration_Initialization.html

HTH,
Brad

On Nov 17, 2015, at 8:24 AM, Oleg Subachev <osubachev at gmail.com> wrote:

> I need to get similarity metrics for 2D images under .NET.
> According to ITK documentation
> (http://www.itk.org/Doxygen/html/ImageSimilarityMetricsPage.html)
> there are several Image To Image metrics available.
> ITK itself contains corresponding methods.
> But I cannot find those methods in SimpleITK :-(
> There is SimpleITK.NormalizedCorrelation(Image, Image, Image) method,
> but it seems to have nothing with similarity metrics.
> 
> How to get to get image similarity metrics under .NET ?
> 
> -- 
> Best regards,
> 
> Oleg Subachev
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community


From skalexander at gmail.com  Tue Nov 17 09:40:59 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Tue, 17 Nov 2015 14:40:59 +0000
Subject: [ITK] [ITK-dev] Precompiled header support
In-Reply-To: <CALzTN-SbJQmcAkVXJKJHyVTRp3iGNFSfmzLN0PU5DLX3r_Qftg@mail.gmail.com>
References: <CALzTN-SbJQmcAkVXJKJHyVTRp3iGNFSfmzLN0PU5DLX3r_Qftg@mail.gmail.com>
Message-ID: <CAJFNcCRSRfQmqAWPOd-tzsgT4kU35uChOikaBLP0skKCpCMaow@mail.gmail.com>

Hi Matt,

By any chance did you try this with microsofts build tools?

On Fri, 13 Nov 2015 at 18:15 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi folks,
>
> In the hope of reducing ITK build time, I started work on adding
> pre-compiled header support to ITK here:
>
>   http://review.source.kitware.com/#/c/20349/
>
> Unfortunately, after testing the build times with both GCC and Clang,
> there was no notable benefit to build times.  I'm abandoning the
> patch, and hopefully the lesson is beneficial for any with false-hopes
> of the advantages to pre-compiled headers!
>
> Thanks,
> Matt
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
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From blowekamp at mail.nih.gov  Tue Nov 17 09:46:51 2015
From: blowekamp at mail.nih.gov (Bradley Lowekamp)
Date: Tue, 17 Nov 2015 09:46:51 -0500
Subject: [ITK] [ITK-dev] Precompiled header support
In-Reply-To: <CAJFNcCRSRfQmqAWPOd-tzsgT4kU35uChOikaBLP0skKCpCMaow@mail.gmail.com>
References: <CALzTN-SbJQmcAkVXJKJHyVTRp3iGNFSfmzLN0PU5DLX3r_Qftg@mail.gmail.com>
 <CAJFNcCRSRfQmqAWPOd-tzsgT4kU35uChOikaBLP0skKCpCMaow@mail.gmail.com>
Message-ID: <6CDA8379-6EEF-4639-BA96-1B64677AD27F@mail.nih.gov>

Matt,

Great to share the results. But I would like a few specifics...

What compiler versions?
The Build time of what?  WrapITK? Perhaps this does not help building of ITK and ITK tests/examples, but would help applications which heavily use ITK. Maybe it'd improve SimpleITK build time or ITK Examples built against ITK?

Brad

On Nov 17, 2015, at 9:40 AM, Simon Alexander <skalexander at gmail.com> wrote:

> Hi Matt,
> 
> By any chance did you try this with microsofts build tools? 
> 
> On Fri, 13 Nov 2015 at 18:15 Matt McCormick <matt.mccormick at kitware.com> wrote:
> Hi folks,
> 
> In the hope of reducing ITK build time, I started work on adding
> pre-compiled header support to ITK here:
> 
>   http://review.source.kitware.com/#/c/20349/
> 
> Unfortunately, after testing the build times with both GCC and Clang,
> there was no notable benefit to build times.  I'm abandoning the
> patch, and hopefully the lesson is beneficial for any with false-hopes
> of the advantages to pre-compiled headers!
> 
> Thanks,
> Matt
> _______________________________________________
> Powered by www.kitware.com
> 
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
> 
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
> 
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
> 
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
> _______________________________________________
> Powered by www.kitware.com
> 
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
> 
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
> 
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
> 
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers

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Kitware offers ITK Training Courses, for more information visit:
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Please keep messages on-topic and check the ITK FAQ at:
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From matt.mccormick at kitware.com  Tue Nov 17 10:03:19 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 17 Nov 2015 10:03:19 -0500
Subject: [ITK] [ITK-dev] About the last optimization
	on	VariableLengthVector
In-Reply-To: <564AE974.3030008@c-s.fr>
References: <5644C9C7.6030603@c-s.fr>
 <CALzTN-QDO_6NPORBSrLSTNacwyTUxv_niYOkVz2nNkdcaC-GRQ@mail.gmail.com>
 <5649E058.5010905@c-s.fr>
 <CALzTN-R7y2QXKf=fJG6R9ON17hQJkVEJq+1nbmG=WGVMsEa6ig@mail.gmail.com>
 <564AE974.3030008@c-s.fr>
Message-ID: <CALzTN-Ra1+CRGmbN+ofv4d6kHM5vHDjyHteSYK4sNZLHo_UvPQ@mail.gmail.com>

On Tue, Nov 17, 2015 at 3:46 AM, Luc Hermitte <luc.hermitte at c-s.fr> wrote:
> Le 16/11/2015 19:44, Matt McCormick a ?crit :
>> On Mon, Nov 16, 2015 at 8:55 AM, Luc Hermitte <luc.hermitte at c-s.fr> wrote:
>>
>>>>> Third Problem: Local Variables
>>>>> 3.1- Auxiliary variables
>>>>> Some algorithms (e.g. BSplines interpolations) require dynamic data
>>>>> structures like matrices. This implies allocation at each iteration.
>>>>> This particular problem isn't addressed in this patch. The solution to
>>>>> 3.2 will help to provide an solution.
>>>>>
>>>>> 3.2- Factorized computations
>>>>> [...]
>>>>>
>>>>> We need a C++98 solution.
>>>>> The only way I see is to rely on cached variables.
>>>>> This means that the ImageFunctions are no longer [[pure]] functions :
>>>>> they'll mutate some variables that we want to allocate once per
>>>>> ImageFunction and ... per thread.
>>>>> Indeed the ImageFunctions shall be reentrant.
>>>>>
>>>>> I was first hoping to use thread_local variables. Alas they cannot be
>>>>> non-static attributes. This is a problem: if I'm not wrong, a same
>>>>> ImageFunction could be used multiple times in a same processing chain.
>>>>>
>>>>> We still have a simple solution, but it requires a second modification
>>>>> to Evaluate() signature: we need to pass the current ThreadId.
>>>>>
>>>>> The new drawback: code migration requires more work. We can not write
>>>>> Evaluate() in terms of EvaluateNoCopy() as the latter requires the
>>>>> threadId that the former doesn't know. This is the reason why I expect
>>>>> the tests to fail.
>>>>> Instead we need to convert all client code (like the WarpImageFilter)
>>>>> and have the default implementation of EvaluateNoCopy() to call the
>>>>> already written and not yet converted Evalutate().
>>>>
>>>> This would be messy, and it would not work very well since the
>>>> ImageFunction's are not involved in orchestration of the threading.
>>>> Instead, it would be better to make the necessary auxiliary variables
>>>> private variables.  Parallel code that uses ImageFunction's should
>>>> create one ImageFunction instance per thread.
>>>
>>> I'm afraid that with this choice, code that currently works well in
>>> parallel won't work anymore. End users will need to rewrite all uses of
>>> image functions in order to use them in MT code. And I guess we will
>>> also need to rewrite several test cases.
>>>
>>> Unless we duplicate the Evaluate() code : i.e. unless we keep the
>>> current version, and we add the new and optimized rewrite (for VLV in
>>> most cases, or for every kind of variables in some other cases (e.g.
>>> BSpline interpolation where caching matrix allocations helps reduce
>>> computation time))
>>> Duplicating image function algorithms doesn't seem to be a good choice
>>> either.
>>
>> Right. Yes, this will not be maintainable.
>>
>> A feasible way forward seems to use a C++11 code path when available
>> that has enhanced performance (i.e., use auto with C++11).  The C++98
>> version will not be as fast, but it will work. ITK leans towards
>> readability, maintainability, and program-ability over performance in
>> cases like this.
>
> With this solution, we loose computation factorizations.
>
>    auto p4 = p0 + (p1 - p0) * d0
>    auto p5 = p2 + (p3 - p2) * d1
>    output = p4 + (p5 - p4) * d2
>
> p4 computations will be done twice on VLVs and std::valarrays.
> // I suppose the dangling reference issue solved.
>
> Using cached variables and introducing a new threadId parameter greatly
> improve computation on VLV. But also on some other algorithms.
>
> Readability and maintainability won't be that reduced.

We are working towards better multi-threading infrastructure a la vtkSMPTools:

  http://www.kitware.com/blog/home/post/915

Generally, the number of threads used are not known a priori.
Moreover, they may change during parallel operations. Adding cache
variables to ImageFunction's requires making them re-entrant, which
will likely have a much more negative impact on performance than any
cached variable gains in these other models. Depending on the backend,
it could get very messy or it may not even be possible.


>>>>> Fourth Problem: heterogeneous data types (i.e. castings)
>>>>> The input image type, the output image type, and the internal pixel type
>>>>> may all be different. That's why the code contain so many static_casts.
>>>>>
>>>>> Alas a static_cast<> on pixels will induce the creation of new pixel values.
>>>>> This is contrary to the purpose of this patch.
>>>>> Copy constructors and assignment operators already support on-the-fly
>>>>> implicit static_casting.
>>>>> We still need to be able to require casting only when it's required.
>>>>> That's where the new function CastInto(), MoveInto() and As() come into
>>>>> rescue.
>>>>
>>>> So compiler's are not intelligent to make a static_cast<> a no-op when
>>>> the types are the same?
>>>
>>> Unfortunately, it doesn't seem so. Check
>>> http://stackoverflow.com/questions/19106826/can-static-cast-to-same-type-introduce-runtime-overhead
>>
>> Thanks for the link. That thread seems to indicate that POD types are
>> not an issue, and non-POD types may not be an issue outside of -O0.
>>
>>
>>> Moreover, in the case of converting VLV<double> to VLV<int>, with a
>>> static_cast, we'll force the creation of a new variable which is what I
>>> striving to avoid.
>>>
>>> Hence the new helper functions that'll use the converting assignment
>>> operators in case of VLV, or static_cast in all other cases.
>>
>> Sounds reasonable.
>>
>> What are the different definitions and uses for  CastInto(),
>> MoveInto(), and As()?
>
> MoveInto will try to swap() the content of two heavy variables like VLV
> when both are of the same type and equivalent to lvalues. If they are
> VLV but if their ValueTypes differ, the on-the-fly converting assignment
> operator is used. Otherwise, static_cast is used.
> The objective is not to use C++11 std::move as for the moment it isn't
> implemented as a move-and-swap, but as a destructive move.
>
> CastInto is to be used when swap cannot be used.
> This is the case when one of the pixel is actually a proxy/pixel_view.
> (i.e. when m_ManageMemory == false). Swapping pixels would alter the
> input image, this is unacceptable. Hence, CastInto.
>
> Both could be used independently of Expression Templates.
>
> As<> produces an expression template (on VLV) that will eventually
> execute a static_cast on each pixel component. On other types, it
> becomes a simple static_cast.

Cool!

Matt
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
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http://public.kitware.com/mailman/listinfo/insight-developers

From matt.mccormick at kitware.com  Tue Nov 17 10:14:04 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 17 Nov 2015 10:14:04 -0500
Subject: [ITK] [ITK-dev] Precompiled header support
In-Reply-To: <CAJFNcCRSRfQmqAWPOd-tzsgT4kU35uChOikaBLP0skKCpCMaow@mail.gmail.com>
References: <CALzTN-SbJQmcAkVXJKJHyVTRp3iGNFSfmzLN0PU5DLX3r_Qftg@mail.gmail.com>
 <CAJFNcCRSRfQmqAWPOd-tzsgT4kU35uChOikaBLP0skKCpCMaow@mail.gmail.com>
Message-ID: <CALzTN-RObKcJ30Vt1y1ZxLDCyv7jeypyj5k9AcwbdG98DUDOjA@mail.gmail.com>

Hi Simon,

No, I did not test with Visual Studio, but it should work with Visual
Studio also.

Thanks,
Matt

On Tue, Nov 17, 2015 at 9:40 AM, Simon Alexander <skalexander at gmail.com> wrote:
> Hi Matt,
>
> By any chance did you try this with microsofts build tools?
>
> On Fri, 13 Nov 2015 at 18:15 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Hi folks,
>>
>> In the hope of reducing ITK build time, I started work on adding
>> pre-compiled header support to ITK here:
>>
>>   http://review.source.kitware.com/#/c/20349/
>>
>> Unfortunately, after testing the build times with both GCC and Clang,
>> there was no notable benefit to build times.  I'm abandoning the
>> patch, and hopefully the lesson is beneficial for any with false-hopes
>> of the advantages to pre-compiled headers!
>>
>> Thanks,
>> Matt
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From matt.mccormick at kitware.com  Tue Nov 17 10:19:48 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 17 Nov 2015 10:19:48 -0500
Subject: [ITK] [ITK-dev] Precompiled header support
In-Reply-To: <6CDA8379-6EEF-4639-BA96-1B64677AD27F@mail.nih.gov>
References: <CALzTN-SbJQmcAkVXJKJHyVTRp3iGNFSfmzLN0PU5DLX3r_Qftg@mail.gmail.com>
 <CAJFNcCRSRfQmqAWPOd-tzsgT4kU35uChOikaBLP0skKCpCMaow@mail.gmail.com>
 <6CDA8379-6EEF-4639-BA96-1B64677AD27F@mail.nih.gov>
Message-ID: <CALzTN-R+WsEZP9jmH0xx2_BZgBpZ1Bkpr7TpcGpW9EdQGuxGdA@mail.gmail.com>

Hi Brad,

I tested with

  Clang 3.5.0

and

  GCC 4.9.3

on Linux. This was testing the build time of the library and the
tests.  The examples or WrapITK or SimpleITK could also use the
infrastructure, but more code would have to be added, and I do not
expect any different behavior there.

I did find the Clang generally builds faster than GCC.  My current
personal go-to build is Clang / Linux / MinSizeRel for development
performance.

Thanks,
Matt

On Tue, Nov 17, 2015 at 9:46 AM, Bradley Lowekamp
<blowekamp at mail.nih.gov> wrote:
> Matt,
>
> Great to share the results. But I would like a few specifics...
>
> What compiler versions?
> The Build time of what?  WrapITK? Perhaps this does not help building of ITK
> and ITK tests/examples, but would help applications which heavily use ITK.
> Maybe it'd improve SimpleITK build time or ITK Examples built against ITK?
>
> Brad
>
> On Nov 17, 2015, at 9:40 AM, Simon Alexander <skalexander at gmail.com> wrote:
>
> Hi Matt,
>
> By any chance did you try this with microsofts build tools?
>
> On Fri, 13 Nov 2015 at 18:15 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Hi folks,
>>
>> In the hope of reducing ITK build time, I started work on adding
>> pre-compiled header support to ITK here:
>>
>>   http://review.source.kitware.com/#/c/20349/
>>
>> Unfortunately, after testing the build times with both GCC and Clang,
>> there was no notable benefit to build times.  I'm abandoning the
>> patch, and hopefully the lesson is beneficial for any with false-hopes
>> of the advantages to pre-compiled headers!
>>
>> Thanks,
>> Matt
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
>
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From matt.mccormick at kitware.com  Tue Nov 17 10:23:59 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 17 Nov 2015 10:23:59 -0500
Subject: [ITK] [ANN] ITK 4.8.2 has been released!
Message-ID: <CALzTN-T7WTcLwTrpfTJZ_F7DN5dJHeDN5zRTcxWLKdcz+jb4bA@mail.gmail.com>

On behalf of the Insight Toolkit Community, we are happy to announce
the release of ITK 4.8.2!

Release files can be downloaded from:

  http://itk.org/ITK/resources/software.html

This is a patch release that fixes critical issues, regressions,
documentation, and compiler support. For compiler support, this
release adds support for Visual Studio 2015 and addresses CMake
configuration on some newer Linux distributions with separate
packaging of the gold linker. There are also a number of other various
fixes, described in the log below. Thanks to all the contributors.

The next feature release, 4.9.0, is scheduled for December, and it
will feature many exciting enhancements!


Enjoy ITK!


Changes from v4.8.1 to v4.8.2:

Bradley Lowekamp (5):
      BUG: Avoid potential exception in itk::Object::UnRegister
      BUG: Avoid null deference in PrintSelf with default construction
      BUG: Use const pointer in Set method for constant ReferenceImage ivar
      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
      BUG: Reduce number of targets with MSVC

Davis Vigneault (3):
      COMP: Warnings in itkVTKImageExport when compiling with c++11
      DOC: Expanded Canny Edge Detection Example
      COMP: Warnings in FFTW Classes when compiling with c++11

Eugene Prilepin (1):
      BUG: Fix a template name formation in python wrappings

Hans Johnson (5):
      STYLE: Minor code style issues for MGHIO
      COMP: Update to version for WikiExamples
      ENH: Update Sphinx for ITK 4.8.0
      ENH: Update MGHIO to be shared lib
      BUG: Fix MGHIO to fix write failures

Hyun Jae Kang (5):
      BUG: Fix HDF5 CMake configuration with VS2015
      BUG: Remove std::cout calls from class
      BUG: itkVTKImageIO class does not handle blank lines in VTK file header.
      BUG: Fixed older XCode linking error
      COMP: Fix data-conversion warning messages on Windows

Matthew McCormick (10):
      COMP: Do not use C++11 alignas in itkAlignedTypedef.
      COMP: Remove unused argument in ConditionVariableNoThreads.
      DOC: Correct spelling of Continuous.
      COMP: Fix KernelTransform SetFixedParameters argument type.
      STYLE: Use prefix increment operator in ImageBase.
      COMP: Use ITK's pygccxml by correctly setting up the sys.path
      COMP: Set CMP0054 to new.
      BUG: Remove duplicate inclusion of wrapping submodules.
      BUG: Fix detection of the gold linker.
      ENH: Bump CMakeLists.txt version to 4.8.2.

Michka Popoff (1):
      COMP: Disable incompatible modules when using Python 3 wrapping

Mikhail Isakov (1):
      BUG: DiffusionTensor3DReconstruction segfault if no baseline image

Simon Alexander (1):
      BUG: incorrect closest point computation

From dzenanz at gmail.com  Tue Nov 17 17:45:50 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Tue, 17 Nov 2015 17:45:50 -0500
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
Message-ID: <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>

Hi T?nde,

checking out *master* branch and CMake configuration went fine. To speed up
compile time, I disabled building of examples and testing. I also enabled
ITK_LEGACY_REMOVE. I did not enable Module_ITKVtkGlue.

Opening the solution file in VS2015 was fairly slow - it might have
something to do with the fact I just installed it. Building in Release x64
finished without a problem: 212 succeeded, 0 failed, 3 skipped.

Regards,
D?enan

On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
wrote:

> Hi Everyone,
>
> I would be interested whether anyone has managed to build the ITK Toolkit
> on Windows 10 64 bit with Microsoft VS 14 2015?
>
> Many thanks.
> Tunde
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
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From dzenanz at gmail.com  Tue Nov 17 18:14:24 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Tue, 17 Nov 2015 18:14:24 -0500
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
Message-ID: <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>

This configuration compiles fine in debug too.

On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:

> Hi T?nde,
>
> checking out *master* branch and CMake configuration went fine. To speed
> up compile time, I disabled building of examples and testing. I also
> enabled ITK_LEGACY_REMOVE. I did not enable Module_ITKVtkGlue.
>
> Opening the solution file in VS2015 was fairly slow - it might have
> something to do with the fact I just installed it. Building in Release x64
> finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>
> Regards,
> D?enan
>
> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
> a.tunde.szilagyi at gmail.com> wrote:
>
>> Hi Everyone,
>>
>> I would be interested whether anyone has managed to build the ITK Toolkit
>> on Windows 10 64 bit with Microsoft VS 14 2015?
>>
>> Many thanks.
>> Tunde
>>
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>>
>>
>
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From a.tunde.szilagyi at gmail.com  Tue Nov 17 18:21:01 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Wed, 18 Nov 2015 00:21:01 +0100
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
Message-ID: <CAMeM8yY3Ae_kf-Lug3pQXbEO-mCRV3knyA83UUkqQNvOUT_XXA@mail.gmail.com>

Hi D?enan,

Many thanks for reporting this back.

Best wishes,
Tunde

On 17 November 2015 at 23:45, D?enan Zuki? <dzenanz at gmail.com> wrote:

> Hi T?nde,
>
> checking out *master* branch and CMake configuration went fine. To speed
> up compile time, I disabled building of examples and testing. I also
> enabled ITK_LEGACY_REMOVE. I did not enable Module_ITKVtkGlue.
>
> Opening the solution file in VS2015 was fairly slow - it might have
> something to do with the fact I just installed it. Building in Release x64
> finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>
> Regards,
> D?enan
>
> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
> a.tunde.szilagyi at gmail.com> wrote:
>
>> Hi Everyone,
>>
>> I would be interested whether anyone has managed to build the ITK Toolkit
>> on Windows 10 64 bit with Microsoft VS 14 2015?
>>
>> Many thanks.
>> Tunde
>>
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>>
>>
>


-- 
--
Tunde
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From dzenanz at gmail.com  Tue Nov 17 19:34:39 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Tue, 17 Nov 2015 19:34:39 -0500
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
Message-ID: <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>

That patch was merged to master, so you don't need to apply it.

I used VS2015 *Win64* as the generator. You seem to be using *Win32*, that
might make a difference.

I used version 3.3.1, which I installed some time ago. You are using
release candidate version - I doubt that is the reason.

Can you try a clean clone (git clone git://itk.org/ITK.git), and then
building into a clean directory?

On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
wrote:

> During CMake I am getting the attached error message. All the error
> messages I receive is with reference to exe files starting with
> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
> this (http://review.source.kitware.com/#/c/20154/1 - Checkout), but this
> still results in the same error messages as before. I have attached one of
> the error messages that appear during CMake project configuration.
>
> Many thanks.
>
> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> Master branch from git://itk.org/ITK.git
>>
>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>> a.tunde.szilagyi at gmail.com> wrote:
>>
>>> Which ITK version did you use?
>>>
>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> This configuration compiles fine in debug too.
>>>>
>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <dzenanz at gmail.com>
>>>> wrote:
>>>>
>>>>> Hi T?nde,
>>>>>
>>>>> checking out *master* branch and CMake configuration went fine. To
>>>>> speed up compile time, I disabled building of examples and testing. I also
>>>>> enabled ITK_LEGACY_REMOVE. I did not enable Module_ITKVtkGlue.
>>>>>
>>>>> Opening the solution file in VS2015 was fairly slow - it might have
>>>>> something to do with the fact I just installed it. Building in Release x64
>>>>> finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>
>>>>> Regards,
>>>>> D?enan
>>>>>
>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>
>>>>>> Hi Everyone,
>>>>>>
>>>>>> I would be interested whether anyone has managed to build the ITK
>>>>>> Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>
>>>>>> Many thanks.
>>>>>> Tunde
>>>>>>
>>>>>> _______________________________________________
>>>>>> Community mailing list
>>>>>> Community at itk.org
>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>>
>>> --
>>> --
>>> Tunde
>>>
>>
>>
>
>
> --
> --
> Tunde
>
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From a.tunde.szilagyi at gmail.com  Tue Nov 17 20:12:45 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Wed, 18 Nov 2015 02:12:45 +0100
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
 <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
Message-ID: <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>

I have tried without the patch, but I am receiving the same error message.
My generator is VS 14 2015 (see CMake window on the LHS).

Now, I have cleaned everything and started with a fresh installation:
- Git Bash
- CMake
- ITK master

I realized that only Win32 CMake exists on the official website:
https://cmake.org/download/

Is this what you refer to in your e-mail below? What else would you
recommend?

Many thanks.


On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com> wrote:

> That patch was merged to master, so you don't need to apply it.
>
> I used VS2015 *Win64* as the generator. You seem to be using *Win32*,
> that might make a difference.
>
> I used version 3.3.1, which I installed some time ago. You are using
> release candidate version - I doubt that is the reason.
>
> Can you try a clean clone (git clone git://itk.org/ITK.git), and then
> building into a clean directory?
>
> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
> a.tunde.szilagyi at gmail.com> wrote:
>
>> During CMake I am getting the attached error message. All the error
>> messages I receive is with reference to exe files starting with
>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>> this (http://review.source.kitware.com/#/c/20154/1 - Checkout), but this
>> still results in the same error messages as before. I have attached one of
>> the error messages that appear during CMake project configuration.
>>
>> Many thanks.
>>
>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> Master branch from git://itk.org/ITK.git
>>>
>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>> a.tunde.szilagyi at gmail.com> wrote:
>>>
>>>> Which ITK version did you use?
>>>>
>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>
>>>>> This configuration compiles fine in debug too.
>>>>>
>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <dzenanz at gmail.com>
>>>>> wrote:
>>>>>
>>>>>> Hi T?nde,
>>>>>>
>>>>>> checking out *master* branch and CMake configuration went fine. To
>>>>>> speed up compile time, I disabled building of examples and testing. I also
>>>>>> enabled ITK_LEGACY_REMOVE. I did not enable Module_ITKVtkGlue.
>>>>>>
>>>>>> Opening the solution file in VS2015 was fairly slow - it might have
>>>>>> something to do with the fact I just installed it. Building in Release x64
>>>>>> finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>
>>>>>> Regards,
>>>>>> D?enan
>>>>>>
>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>
>>>>>>> Hi Everyone,
>>>>>>>
>>>>>>> I would be interested whether anyone has managed to build the ITK
>>>>>>> Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>
>>>>>>> Many thanks.
>>>>>>> Tunde
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Community mailing list
>>>>>>> Community at itk.org
>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> --
>>>> Tunde
>>>>
>>>
>>>
>>
>>
>> --
>> --
>> Tunde
>>
>
>


-- 
--
Tunde
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From dzenanz at gmail.com  Tue Nov 17 22:40:31 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Tue, 17 Nov 2015 22:40:31 -0500
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
 <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
 <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
Message-ID: <CAPf2UMSN=ff2_pjKepVyd2V3coi_Fw33YwbSosPH+Fyv6hXPJg@mail.gmail.com>

What I meant is that the choice of generator should include Win64 in its
name, as shown in the attached screenshot. CMake executable is Win32, that
does not matter. Also, I just built ITK in 32 bit mode without issues, so
something else is amiss.

Can you attach your CMakeCache.txt?

On Tue, Nov 17, 2015 at 8:12 PM, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
wrote:

> I have tried without the patch, but I am receiving the same error message.
> My generator is VS 14 2015 (see CMake window on the LHS).
>
> Now, I have cleaned everything and started with a fresh installation:
> - Git Bash
> - CMake
> - ITK master
>
> I realized that only Win32 CMake exists on the official website:
> https://cmake.org/download/
>
> Is this what you refer to in your e-mail below? What else would you
> recommend?
>
> Many thanks.
>
>
> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> That patch was merged to master, so you don't need to apply it.
>>
>> I used VS2015 *Win64* as the generator. You seem to be using *Win32*,
>> that might make a difference.
>>
>> I used version 3.3.1, which I installed some time ago. You are using
>> release candidate version - I doubt that is the reason.
>>
>> Can you try a clean clone (git clone git://itk.org/ITK.git), and then
>> building into a clean directory?
>>
>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>> a.tunde.szilagyi at gmail.com> wrote:
>>
>>> During CMake I am getting the attached error message. All the error
>>> messages I receive is with reference to exe files starting with
>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>> this (http://review.source.kitware.com/#/c/20154/1 - Checkout), but
>>> this still results in the same error messages as before. I have attached
>>> one of the error messages that appear during CMake project configuration.
>>>
>>> Many thanks.
>>>
>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> Master branch from git://itk.org/ITK.git
>>>>
>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>
>>>>> Which ITK version did you use?
>>>>>
>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>
>>>>>> This configuration compiles fine in debug too.
>>>>>>
>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <dzenanz at gmail.com>
>>>>>> wrote:
>>>>>>
>>>>>>> Hi T?nde,
>>>>>>>
>>>>>>> checking out *master* branch and CMake configuration went fine. To
>>>>>>> speed up compile time, I disabled building of examples and testing. I also
>>>>>>> enabled ITK_LEGACY_REMOVE. I did not enable Module_ITKVtkGlue.
>>>>>>>
>>>>>>> Opening the solution file in VS2015 was fairly slow - it might have
>>>>>>> something to do with the fact I just installed it. Building in Release x64
>>>>>>> finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>
>>>>>>> Regards,
>>>>>>> D?enan
>>>>>>>
>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>
>>>>>>>> Hi Everyone,
>>>>>>>>
>>>>>>>> I would be interested whether anyone has managed to build the ITK
>>>>>>>> Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>
>>>>>>>> Many thanks.
>>>>>>>> Tunde
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Community mailing list
>>>>>>>> Community at itk.org
>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> --
>>>>> Tunde
>>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> --
>>> Tunde
>>>
>>
>>
>
>
> --
> --
> Tunde
>
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From yassminabdallah at gmail.com  Wed Nov 18 02:16:39 2015
From: yassminabdallah at gmail.com (Yassmin)
Date: Wed, 18 Nov 2015 00:16:39 -0700 (MST)
Subject: [ITK] [ITK-users] Compile ITK for iPhone
In-Reply-To: <CALzTN-SYR1crYUMPFte3PO8aLR1UcCtcaP4P76iijKhm2x4d8A@mail.gmail.com>
References: <1446685276695-7588136.post@n2.nabble.com>
 <1446819343470-7588145.post@n2.nabble.com>
 <CALzTN-RRRvu0yPGVCvBFXpcaTWdA8u0DsTQmrGbSU-42NNiDaA@mail.gmail.com>
 <1446880952822-7588149.post@n2.nabble.com>
 <CALzTN-SYR1crYUMPFte3PO8aLR1UcCtcaP4P76iijKhm2x4d8A@mail.gmail.com>
Message-ID: <1447830999958-7588183.post@n2.nabble.com>

Hello Matt,

i'm sorry for all these confused mails, i have a different result each time
i built ITK that made me not certain about anything,

Recently i use Xcode 7 on OS X el captain and the latest release from ITK
4.8.2. i follow this tutorial 
http://www.cs.sfu.ca/~hamarneh/ecopy/ij2010a.pdf

1- build itk using cmake through Xcode command GXcode and the build was
successfully.
2- build the Xcode project on OS X under "Release" option and it was
successfully.
3- error appear in vl_math when built the project under "iOS architecture",
add this line "#define finite(x) ??inline?isfinited((double)x)" solve the
problem, i didn't remove any dependance target as by remove them like the
tutorial said i face some errors so i just left them.
4- the library files didn't appear in this path "ITK BINARY
DIR/bin/Release", i found them in /ITKBin/ITKBuild/lib/Debug.


i now face the problem of add these paths to Header Search as they didn't
exists, 
? ITK SOURCE DIR/Code/Common
? ITK SOURCE DIR/Utilities/vxl/vcl
? ITK SOURCE DIR/Utilities/vxl/core
? ITK BINARY DIR/Utilities/vxl/vcl
? ITK BINARY DIR/Utilities/vxl/core
? ITK BINARY DIR


unfortunately i didn't know if i walk through the correct path or not for
build ITK.





--
View this message in context: http://itk-insight-users.2283740.n2.nabble.com/Compile-ITK-for-iPhone-tp7588136p7588183.html
Sent from the ITK Insight Users mailing list archive at Nabble.com.
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From a.tunde.szilagyi at gmail.com  Wed Nov 18 02:30:35 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Wed, 18 Nov 2015 08:30:35 +0100
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAPf2UMSN=ff2_pjKepVyd2V3coi_Fw33YwbSosPH+Fyv6hXPJg@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
 <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
 <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
 <CAPf2UMSN=ff2_pjKepVyd2V3coi_Fw33YwbSosPH+Fyv6hXPJg@mail.gmail.com>
Message-ID: <CAMeM8ybeAARUD13gbwHv-NK17K2SpXNmJ2xYH-6_WbjVVaD3Jg@mail.gmail.com>

Thank you, I have made the new selection to VS 14 2015 Win64 generator in
CMake.

However, the patch that solved the error messages is:

http://review.source.kitware.com/#/c/20272/

and NOT:

http://review.source.kitware.com/#/c/20154/1

I have now no errors during CMake configuration/generation step. The VS 14
2015 build is successful with 335 succeeded, 0 failed, 0 updated.

BUT the ~/ITK_bin/bin/Debug/  does not contain the expected
directories/files. By expected I mean the ones specified in the
ITK_Tutorial:

ITKCommon
ITKBasicFilters
ITKAlgorithms
ITKNumerics
ITKFEM
ITKIO
ITKStatistics
ITKMetalIO
itkpng
itkzlib

I have attached the CMakeCache.txt and the selection in the configuration
stage in CMake.

Many thanks in advance.


On 18 November 2015 at 04:40, D?enan Zuki? <dzenanz at gmail.com> wrote:

> What I meant is that the choice of generator should include Win64 in its
> name, as shown in the attached screenshot. CMake executable is Win32, that
> does not matter. Also, I just built ITK in 32 bit mode without issues, so
> something else is amiss.
>
> Can you attach your CMakeCache.txt?
>
> On Tue, Nov 17, 2015 at 8:12 PM, T?nde Szil?gyi <
> a.tunde.szilagyi at gmail.com> wrote:
>
>> I have tried without the patch, but I am receiving the same error
>> message. My generator is VS 14 2015 (see CMake window on the LHS).
>>
>> Now, I have cleaned everything and started with a fresh installation:
>> - Git Bash
>> - CMake
>> - ITK master
>>
>> I realized that only Win32 CMake exists on the official website:
>> https://cmake.org/download/
>>
>> Is this what you refer to in your e-mail below? What else would you
>> recommend?
>>
>> Many thanks.
>>
>>
>> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> That patch was merged to master, so you don't need to apply it.
>>>
>>> I used VS2015 *Win64* as the generator. You seem to be using *Win32*,
>>> that might make a difference.
>>>
>>> I used version 3.3.1, which I installed some time ago. You are using
>>> release candidate version - I doubt that is the reason.
>>>
>>> Can you try a clean clone (git clone git://itk.org/ITK.git), and then
>>> building into a clean directory?
>>>
>>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>>> a.tunde.szilagyi at gmail.com> wrote:
>>>
>>>> During CMake I am getting the attached error message. All the error
>>>> messages I receive is with reference to exe files starting with
>>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>>> this (http://review.source.kitware.com/#/c/20154/1 - Checkout), but
>>>> this still results in the same error messages as before. I have attached
>>>> one of the error messages that appear during CMake project configuration.
>>>>
>>>> Many thanks.
>>>>
>>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>
>>>>> Master branch from git://itk.org/ITK.git
>>>>>
>>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>
>>>>>> Which ITK version did you use?
>>>>>>
>>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>>
>>>>>>> This configuration compiles fine in debug too.
>>>>>>>
>>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> Hi T?nde,
>>>>>>>>
>>>>>>>> checking out *master* branch and CMake configuration went fine. To
>>>>>>>> speed up compile time, I disabled building of examples and testing. I also
>>>>>>>> enabled ITK_LEGACY_REMOVE. I did not enable Module_ITKVtkGlue.
>>>>>>>>
>>>>>>>> Opening the solution file in VS2015 was fairly slow - it might have
>>>>>>>> something to do with the fact I just installed it. Building in Release x64
>>>>>>>> finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>>
>>>>>>>> Regards,
>>>>>>>> D?enan
>>>>>>>>
>>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>
>>>>>>>>> Hi Everyone,
>>>>>>>>>
>>>>>>>>> I would be interested whether anyone has managed to build the ITK
>>>>>>>>> Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>>
>>>>>>>>> Many thanks.
>>>>>>>>> Tunde
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> Community mailing list
>>>>>>>>> Community at itk.org
>>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> --
>>>>>> Tunde
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> --
>>>> Tunde
>>>>
>>>
>>>
>>
>>
>> --
>> --
>> Tunde
>>
>
>


-- 
--
Tunde
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# This is the CMakeCache file.
# For build in directory: c:/Users/Tunde Szilagyi/ITK_bin
# It was generated by CMake: C:/Program Files (x86)/CMake/bin/cmake.exe
# You can edit this file to change values found and used by cmake.
# If you do not want to change any of the values, simply exit the editor.
# If you do want to change a value, simply edit, save, and exit the editor.
# The syntax for the file is as follows:
# KEY:TYPE=VALUE
# KEY is the name of a variable in the cache.
# TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!.
# VALUE is the current value for the KEY.

########################
# EXTERNAL cache entries
########################

//Build the documentation (Doxygen).
BUILD_DOCUMENTATION:BOOL=OFF

//Build the Examples directory.
BUILD_EXAMPLES:BOOL=OFF

//Build Shared Libraries
BUILD_SHARED_LIBS:BOOL=OFF

//Build the testing tree.
BUILD_TESTING:BOOL=ON

//Path to a program.
BZRCOMMAND:FILEPATH=BZRCOMMAND-NOTFOUND

//Semicolon separated list of supported configuration types, only
// supports Debug, Release, MinSizeRel, and RelWithDebInfo, anything
// else will be ignored.
CMAKE_CONFIGURATION_TYPES:STRING=Debug;Release;MinSizeRel;RelWithDebInfo

//Flags used by the compiler during all build types.
CMAKE_CXX_FLAGS:STRING= /DWIN32 /D_WINDOWS /W3 /GR /EHsc

//Flags used by the compiler during debug builds.
CMAKE_CXX_FLAGS_DEBUG:STRING=/D_DEBUG /MDd /Zi /Ob0 /Od /RTC1

//Flags used by the compiler during release builds for minimum
// size.
CMAKE_CXX_FLAGS_MINSIZEREL:STRING=/MD /O1 /Ob1 /D NDEBUG

//Flags used by the compiler during release builds.
CMAKE_CXX_FLAGS_RELEASE:STRING=/MD /O2 /Ob2 /D NDEBUG

//Flags used by the compiler during release builds with debug info.
CMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=/MD /Zi /O2 /Ob1 /D NDEBUG

//Libraries linked by default with all C++ applications.
CMAKE_CXX_STANDARD_LIBRARIES:STRING=kernel32.lib user32.lib gdi32.lib winspool.lib shell32.lib ole32.lib oleaut32.lib uuid.lib comdlg32.lib advapi32.lib

//Flags used by the compiler during all build types.
CMAKE_C_FLAGS:STRING= /DWIN32 /D_WINDOWS /W3

//Flags used by the compiler during debug builds.
CMAKE_C_FLAGS_DEBUG:STRING=/D_DEBUG /MDd /Zi /Ob0 /Od /RTC1

//Flags used by the compiler during release builds for minimum
// size.
CMAKE_C_FLAGS_MINSIZEREL:STRING=/MD /O1 /Ob1 /D NDEBUG

//Flags used by the compiler during release builds.
CMAKE_C_FLAGS_RELEASE:STRING=/MD /O2 /Ob2 /D NDEBUG

//Flags used by the compiler during release builds with debug info.
CMAKE_C_FLAGS_RELWITHDEBINFO:STRING=/MD /Zi /O2 /Ob1 /D NDEBUG

//Libraries linked by default with all C applications.
CMAKE_C_STANDARD_LIBRARIES:STRING=kernel32.lib user32.lib gdi32.lib winspool.lib shell32.lib ole32.lib oleaut32.lib uuid.lib comdlg32.lib advapi32.lib

//Flags used by the linker.
CMAKE_EXE_LINKER_FLAGS:STRING= /machine:x64

//Flags used by the linker during debug builds.
CMAKE_EXE_LINKER_FLAGS_DEBUG:STRING=/debug /INCREMENTAL

//Flags used by the linker during release minsize builds.
CMAKE_EXE_LINKER_FLAGS_MINSIZEREL:STRING=/INCREMENTAL:NO

//Flags used by the linker during release builds.
CMAKE_EXE_LINKER_FLAGS_RELEASE:STRING=/INCREMENTAL:NO

//Flags used by the linker during Release with Debug Info builds.
CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO:STRING=/debug /INCREMENTAL

//Use HP pthreads.
CMAKE_HP_PTHREADS:BOOL=OFF

//Install path prefix, prepended onto install directories.
CMAKE_INSTALL_PREFIX:PATH=C:/Program Files/ITK

//Path to a program.
CMAKE_LINKER:FILEPATH=C:/Program Files (x86)/Microsoft Visual Studio 14.0/VC/bin/x86_amd64/link.exe

//Flags used by the linker during the creation of modules.
CMAKE_MODULE_LINKER_FLAGS:STRING= /machine:x64

//Flags used by the linker during debug builds.
CMAKE_MODULE_LINKER_FLAGS_DEBUG:STRING=/debug /INCREMENTAL

//Flags used by the linker during release minsize builds.
CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL:STRING=/INCREMENTAL:NO

//Flags used by the linker during release builds.
CMAKE_MODULE_LINKER_FLAGS_RELEASE:STRING=/INCREMENTAL:NO

//Flags used by the linker during Release with Debug Info builds.
CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO:STRING=/debug /INCREMENTAL

//Value Computed by CMake
CMAKE_PROJECT_NAME:STATIC=ITK

//RC compiler
CMAKE_RC_COMPILER:FILEPATH=rc

//Flags for Windows Resource Compiler.
CMAKE_RC_FLAGS:STRING=' /DWIN32 '

//Flags used by the linker during the creation of dll's.
CMAKE_SHARED_LINKER_FLAGS:STRING= /machine:x64

//Flags used by the linker during debug builds.
CMAKE_SHARED_LINKER_FLAGS_DEBUG:STRING=/debug /INCREMENTAL

//Flags used by the linker during release minsize builds.
CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL:STRING=/INCREMENTAL:NO

//Flags used by the linker during release builds.
CMAKE_SHARED_LINKER_FLAGS_RELEASE:STRING=/INCREMENTAL:NO

//Flags used by the linker during Release with Debug Info builds.
CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO:STRING=/debug /INCREMENTAL

//If set, runtime paths are not added when installing shared libraries,
// but are added when building.
CMAKE_SKIP_INSTALL_RPATH:BOOL=OFF

//If set, runtime paths are not added when using shared libraries.
CMAKE_SKIP_RPATH:BOOL=OFF

//Flags used by the linker during the creation of static libraries.
CMAKE_STATIC_LINKER_FLAGS:STRING= /machine:x64

//Flags used by the linker during debug builds.
CMAKE_STATIC_LINKER_FLAGS_DEBUG:STRING=

//Flags used by the linker during release minsize builds.
CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL:STRING=

//Flags used by the linker during release builds.
CMAKE_STATIC_LINKER_FLAGS_RELEASE:STRING=

//Flags used by the linker during Release with Debug Info builds.
CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO:STRING=

//Thread library used.
CMAKE_THREAD_LIBS:STRING=

//Use the pthreads library.
CMAKE_USE_PTHREADS:BOOL=OFF

//Use sproc libs.
CMAKE_USE_SPROC:BOOL=OFF

//Use the win32 thread library.
CMAKE_USE_WIN32_THREADS:BOOL=ON

//If this value is on, makefiles will be generated without the
// .SILENT directive, and all commands will be echoed to the console
// during the make.  This is useful for debugging only. With Visual
// Studio IDE projects all commands are done without /nologo.
CMAKE_VERBOSE_MAKEFILE:BOOL=OFF

//X11 extra flags.
CMAKE_X_CFLAGS:STRING=-I

//Libraries and options used in X11 programs.
CMAKE_X_LIBS:STRING=

//Path to the coverage program that CTest uses for performing coverage
// inspection
COVERAGE_COMMAND:FILEPATH=COVERAGE_COMMAND-NOTFOUND

//Extra command line flags to pass to the coverage tool
COVERAGE_EXTRA_FLAGS:STRING=-l

//Enable to build 7-Zip packages
CPACK_BINARY_7Z:BOOL=OFF

//Enable to build IFW packages
CPACK_BINARY_IFW:BOOL=OFF

//Enable to build NSIS packages
CPACK_BINARY_NSIS:BOOL=ON

//Enable to build WiX packages
CPACK_BINARY_WIX:BOOL=OFF

//Enable to build ZIP packages
CPACK_BINARY_ZIP:BOOL=OFF

//Enable to build 7-Zip source packages
CPACK_SOURCE_7Z:BOOL=ON

//Enable to build ZIP source packages
CPACK_SOURCE_ZIP:BOOL=ON

//Path to a program.
CPPCHECK_EXECUTABLE:FILEPATH=CPPCHECK_EXECUTABLE-NOTFOUND

//Path to search for cppcheck
CPPCHECK_ROOT_DIR:PATH=

//How many times to retry timed-out CTest submissions.
CTEST_SUBMIT_RETRY_COUNT:STRING=3

//How long to wait between timed-out CTest submissions.
CTEST_SUBMIT_RETRY_DELAY:STRING=5

//Path to a program.
CVSCOMMAND:FILEPATH=CVSCOMMAND-NOTFOUND

//Options passed to the cvs update command.
CVS_UPDATE_OPTIONS:STRING=-d -A -P

//Test CXX_HAS_WARNING-Wformat=2
CXX_HAS_WARNING-Wformat:UNINITIALIZED=2:INTERNAL=

//Path to a file.
CYGWIN_INSTALL_PATH:PATH=C:/cygwin64

//Test C_HAS_WARNING-Wformat=2
C_HAS_WARNING-Wformat:UNINITIALIZED=2:INTERNAL=

//Maximum time allowed before CTest will kill the test.
DART_TESTING_TIMEOUT:STRING=1500

//Semicolon-separated list of local directories holding data objects
// in the layout %(algo)/%(hash).
ExternalData_OBJECT_STORES:STRING=

//Additional URL templates for the ExternalData CMake script to
// look for testing data. E.g.
//\nfile:///var/bigharddrive/%(algo)/%(hash)
ExternalData_URL_TEMPLATES:STRING=

//Value Computed by CMake
FilteringExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/Filtering

//Value Computed by CMake
FilteringExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/Filtering

//Value Computed by CMake
GDCMCHARLS_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmcharls

//Value Computed by CMake
GDCMCHARLS_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmcharls

//Value Computed by CMake
GDCMJPEG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmjpeg

//Value Computed by CMake
GDCMJPEG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmjpeg

//Value Computed by CMake
GDCMOPENJPEG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg-v2

//Value Computed by CMake
GDCMOPENJPEG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg-v2

//Value Computed by CMake
GDCMSOCKETXX_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GDCM/src/gdcm/Utilities/socketxx

//Value Computed by CMake
GDCMSOCKETXX_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GDCM/src/gdcm/Utilities/socketxx

//Value Computed by CMake
GDCM_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GDCM/src/gdcm

//Value Computed by CMake
GDCM_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GDCM/src/gdcm

//Path to a program.
GITCOMMAND:FILEPATH=GITCOMMAND-NOTFOUND

//Value Computed by CMake
HDF5_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/HDF5/src/itkhdf5

//Value Computed by CMake
HDF5_CPP_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/HDF5/src/itkhdf5/c++

//Value Computed by CMake
HDF5_CPP_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/c++

//Value Computed by CMake
HDF5_CPP_SRC_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/HDF5/src/itkhdf5/c++/src

//Value Computed by CMake
HDF5_CPP_SRC_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/c++/src

//Value Computed by CMake
HDF5_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/HDF5/src/itkhdf5

//Value Computed by CMake
HDF5_SRC_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/HDF5/src/itkhdf5/src

//Value Computed by CMake
HDF5_SRC_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src

//Path to a program.
HGCOMMAND:FILEPATH=HGCOMMAND-NOTFOUND

//Value Computed by CMake
IOExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/IO

//Value Computed by CMake
IOExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/IO

//Value Computed by CMake
ITK-Convolution_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Convolution

//Value Computed by CMake
ITK-Convolution_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Convolution

//Value Computed by CMake
ITK-Deconvolution_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Deconvolution

//Value Computed by CMake
ITK-Deconvolution_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Deconvolution

//Value Computed by CMake
ITK3P_EXPAT_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/Expat/src/expat

//Value Computed by CMake
ITK3P_EXPAT_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/Expat/src/expat

//Value Computed by CMake
ITK3P_JPEG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/JPEG/src/itkjpeg

//Value Computed by CMake
ITK3P_JPEG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/JPEG/src/itkjpeg

//Value Computed by CMake
ITK3P_MetaIO_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/MetaIO/src/MetaIO/src

//Value Computed by CMake
ITK3P_MetaIO_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/MetaIO/src/MetaIO/src

//Value Computed by CMake
ITK3P_NrrdIO_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/NrrdIO/src/NrrdIO

//Value Computed by CMake
ITK3P_NrrdIO_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/NrrdIO/src/NrrdIO

//Value Computed by CMake
ITK3P_PNG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/PNG/src/itkpng

//Value Computed by CMake
ITK3P_PNG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/PNG/src/itkpng

//Value Computed by CMake
ITK3P_TIFF_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/TIFF/src/itktiff

//Value Computed by CMake
ITK3P_TIFF_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/TIFF/src/itktiff

//Value Computed by CMake
ITK3P_ZLIB_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/ZLIB/src/itkzlib

//Value Computed by CMake
ITK3P_ZLIB_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/ZLIB/src/itkzlib

//Value Computed by CMake
ITKAnisotropicSmoothing_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/AnisotropicSmoothing

//Value Computed by CMake
ITKAnisotropicSmoothing_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/AnisotropicSmoothing

//Value Computed by CMake
ITKAntiAlias_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/AntiAlias

//Value Computed by CMake
ITKAntiAlias_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/AntiAlias

//Value Computed by CMake
ITKBiasCorrection_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/BiasCorrection

//Dependencies for the target
ITKBiasCorrection_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKPolynomials;general;ITKStatistics;general;ITKOptimizers;

//Value Computed by CMake
ITKBiasCorrection_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/BiasCorrection

//Value Computed by CMake
ITKBinaryMathematicalMorphology_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/BinaryMathematicalMorphology

//Value Computed by CMake
ITKBinaryMathematicalMorphology_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/BinaryMathematicalMorphology

//Value Computed by CMake
ITKBioCell_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/BioCell

//Dependencies for the target
ITKBioCell_LIB_DEPENDS:STATIC=general;ITKMesh;

//Value Computed by CMake
ITKBioCell_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/BioCell

//Value Computed by CMake
ITKClassifiers_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/Classifiers

//Value Computed by CMake
ITKClassifiers_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/Classifiers

//Value Computed by CMake
ITKColormap_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Colormap

//Value Computed by CMake
ITKColormap_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Colormap

//Value Computed by CMake
ITKCommon_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/Common

//Dependencies for the target
ITKCommon_LIB_DEPENDS:STATIC=general;itksys;general;ITKVNLInstantiation;general;itkdouble-conversion;

//Value Computed by CMake
ITKCommon_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/Common

//Value Computed by CMake
ITKConnectedComponents_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/ConnectedComponents

//Value Computed by CMake
ITKConnectedComponents_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/ConnectedComponents

//Value Computed by CMake
ITKCurvatureFlow_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/CurvatureFlow

//Value Computed by CMake
ITKCurvatureFlow_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/CurvatureFlow

//Value Computed by CMake
ITKDICOMParser_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/DICOMParser

//Dependencies for target
ITKDICOMParser_LIB_DEPENDS:STATIC=

//Value Computed by CMake
ITKDICOMParser_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/DICOMParser

//Value Computed by CMake
ITKDeformableMesh_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/DeformableMesh

//Value Computed by CMake
ITKDeformableMesh_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/DeformableMesh

//Value Computed by CMake
ITKDenoising_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Denoising

//Value Computed by CMake
ITKDenoising_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Denoising

//Value Computed by CMake
ITKDiffusionTensorImage_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/DiffusionTensorImage

//Value Computed by CMake
ITKDiffusionTensorImage_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/DiffusionTensorImage

//Value Computed by CMake
ITKDisplacementField_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/DisplacementField

//Value Computed by CMake
ITKDisplacementField_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/DisplacementField

//Value Computed by CMake
ITKDistanceMap_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/DistanceMap

//Value Computed by CMake
ITKDistanceMap_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/DistanceMap

//Value Computed by CMake
ITKDoubleConversion_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/DoubleConversion

//Value Computed by CMake
ITKDoubleConversion_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/DoubleConversion

//Dependencies for target
ITKEXPAT_LIB_DEPENDS:STATIC=

//Value Computed by CMake
ITKEigen_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/Eigen

//Value Computed by CMake
ITKEigen_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/Eigen

//Value Computed by CMake
ITKExpat_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/Expat

//Value Computed by CMake
ITKExpat_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/Expat

//Value Computed by CMake
ITKFEMRegistration_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/FEM

//Value Computed by CMake
ITKFEMRegistration_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/FEM

//Value Computed by CMake
ITKFEM_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/FEM

//Dependencies for the target
ITKFEM_LIB_DEPENDS:STATIC=general;ITKMetaIO;general;ITKCommon;general;ITKStatistics;general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKOptimizers;

//Value Computed by CMake
ITKFEM_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/FEM

//Value Computed by CMake
ITKFFT_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/FFT

//Value Computed by CMake
ITKFFT_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/FFT

//Value Computed by CMake
ITKFastMarching_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/FastMarching

//Value Computed by CMake
ITKFastMarching_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/FastMarching

//Value Computed by CMake
ITKFiniteDifference_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/FiniteDifference

//Value Computed by CMake
ITKFiniteDifference_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/FiniteDifference

//Value Computed by CMake
ITKGDCM_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GDCM

//Value Computed by CMake
ITKGDCM_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GDCM

//Value Computed by CMake
ITKGIFTI_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GIFTI

//Value Computed by CMake
ITKGIFTI_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GIFTI

//Value Computed by CMake
ITKGPUAnisotropicSmoothing_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/GPUAnisotropicSmoothing

//Value Computed by CMake
ITKGPUAnisotropicSmoothing_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/GPUAnisotropicSmoothing

//Value Computed by CMake
ITKGPUCommon_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/GPUCommon

//Value Computed by CMake
ITKGPUCommon_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/GPUCommon

//Value Computed by CMake
ITKGPUFiniteDifference_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/GPUFiniteDifference

//Value Computed by CMake
ITKGPUFiniteDifference_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/GPUFiniteDifference

//Value Computed by CMake
ITKGPUImageFilterBase_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/GPUImageFilterBase

//Value Computed by CMake
ITKGPUImageFilterBase_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/GPUImageFilterBase

//Value Computed by CMake
ITKGPUPDEDeformable_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/GPUPDEDeformable

//Value Computed by CMake
ITKGPUPDEDeformable_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/GPUPDEDeformable

//Value Computed by CMake
ITKGPURegistrationCommon_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/GPUCommon

//Value Computed by CMake
ITKGPURegistrationCommon_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/GPUCommon

//Value Computed by CMake
ITKGPUSmoothing_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/GPUSmoothing

//Value Computed by CMake
ITKGPUSmoothing_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/GPUSmoothing

//Value Computed by CMake
ITKGPUThresholding_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/GPUThresholding

//Value Computed by CMake
ITKGPUThresholding_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/GPUThresholding

//Value Computed by CMake
ITKHDF5_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/HDF5

//Value Computed by CMake
ITKHDF5_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/HDF5

//Value Computed by CMake
ITKIOBMP_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/BMP

//Dependencies for the target
ITKIOBMP_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOBMP_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/BMP

//Value Computed by CMake
ITKIOBioRad_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/BioRad

//Dependencies for the target
ITKIOBioRad_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOBioRad_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/BioRad

//Value Computed by CMake
ITKIOCSV_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/CSV

//Dependencies for the target
ITKIOCSV_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOCSV_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/CSV

//Value Computed by CMake
ITKIOGDCM_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/GDCM

//Dependencies for the target
ITKIOGDCM_LIB_DEPENDS:STATIC=general;gdcmDICT;general;gdcmMSFF;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOGDCM_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/GDCM

//Value Computed by CMake
ITKIOGE_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/GE

//Dependencies for the target
ITKIOGE_LIB_DEPENDS:STATIC=general;ITKIOIPL;

//Value Computed by CMake
ITKIOGE_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/GE

//Value Computed by CMake
ITKIOGIPL_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/GIPL

//Dependencies for the target
ITKIOGIPL_LIB_DEPENDS:STATIC=general;ITKIOImageBase;general;itkzlib;

//Value Computed by CMake
ITKIOGIPL_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/GIPL

//Value Computed by CMake
ITKIOHDF5_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/HDF5

//Dependencies for the target
ITKIOHDF5_LIB_DEPENDS:STATIC=general;itkhdf5_cpp;general;itkhdf5;general;ITKIOImageBase;general;itkhdf5_cpp;general;itkhdf5;

//Value Computed by CMake
ITKIOHDF5_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/HDF5

//Value Computed by CMake
ITKIOIPL_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/IPL

//Dependencies for the target
ITKIOIPL_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOIPL_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/IPL

//Value Computed by CMake
ITKIOImageBase_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/ImageBase

//Dependencies for the target
ITKIOImageBase_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKIOImageBase_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/ImageBase

//Value Computed by CMake
ITKIOJPEG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/JPEG

//Dependencies for the target
ITKIOJPEG_LIB_DEPENDS:STATIC=general;itkjpeg;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOJPEG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/JPEG

//Value Computed by CMake
ITKIOLSM_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/LSM

//Dependencies for the target
ITKIOLSM_LIB_DEPENDS:STATIC=general;ITKIOTIFF;

//Value Computed by CMake
ITKIOLSM_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/LSM

//Value Computed by CMake
ITKIOMRC_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/MRC

//Dependencies for the target
ITKIOMRC_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOMRC_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/MRC

//Value Computed by CMake
ITKIOMesh_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/Mesh

//Dependencies for the target
ITKIOMesh_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKgiftiio;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOMesh_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/Mesh

//Value Computed by CMake
ITKIOMeta_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/Meta

//Dependencies for the target
ITKIOMeta_LIB_DEPENDS:STATIC=general;ITKMetaIO;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOMeta_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/Meta

//Dependencies for the target
ITKIONIFTI-TestSupport_LIB_DEPENDS:STATIC=general;ITKIONIFTI;

//Value Computed by CMake
ITKIONIFTI_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/NIFTI

//Dependencies for the target
ITKIONIFTI_LIB_DEPENDS:STATIC=general;ITKznz;general;ITKniftiio;general;ITKIOImageBase;

//Value Computed by CMake
ITKIONIFTI_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/NIFTI

//Value Computed by CMake
ITKIONRRD_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/NRRD

//Dependencies for the target
ITKIONRRD_LIB_DEPENDS:STATIC=general;ITKNrrdIO;general;ITKIOImageBase;

//Value Computed by CMake
ITKIONRRD_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/NRRD

//Value Computed by CMake
ITKIOPNG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/PNG

//Dependencies for the target
ITKIOPNG_LIB_DEPENDS:STATIC=general;itkpng;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOPNG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/PNG

//Value Computed by CMake
ITKIORAW_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/RAW

//Value Computed by CMake
ITKIORAW_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/RAW

//Value Computed by CMake
ITKIOSiemens_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/Siemens

//Dependencies for the target
ITKIOSiemens_LIB_DEPENDS:STATIC=general;ITKIOIPL;general;ITKIOGE;

//Value Computed by CMake
ITKIOSiemens_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/Siemens

//Value Computed by CMake
ITKIOSpatialObjects_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/SpatialObjects

//Dependencies for the target
ITKIOSpatialObjects_LIB_DEPENDS:STATIC=general;ITKSpatialObjects;general;ITKIOXML;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOSpatialObjects_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/SpatialObjects

//Value Computed by CMake
ITKIOStimulate_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/Stimulate

//Dependencies for the target
ITKIOStimulate_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOStimulate_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/Stimulate

//Value Computed by CMake
ITKIOTIFF_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/TIFF

//Dependencies for the target
ITKIOTIFF_LIB_DEPENDS:STATIC=general;itktiff;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOTIFF_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/TIFF

//Value Computed by CMake
ITKIOTransformBase_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/TransformBase

//Dependencies for the target
ITKIOTransformBase_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKIOTransformBase_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/TransformBase

//Value Computed by CMake
ITKIOTransformHDF5_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/TransformHDF5

//Dependencies for the target
ITKIOTransformHDF5_LIB_DEPENDS:STATIC=general;ITKIOTransformBase;general;itkhdf5_cpp;general;itkhdf5;

//Value Computed by CMake
ITKIOTransformHDF5_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/TransformHDF5

//Value Computed by CMake
ITKIOTransformInsightLegacy_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/TransformInsightLegacy

//Dependencies for the target
ITKIOTransformInsightLegacy_LIB_DEPENDS:STATIC=general;ITKIOTransformBase;general;itkdouble-conversion;

//Value Computed by CMake
ITKIOTransformInsightLegacy_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/TransformInsightLegacy

//Value Computed by CMake
ITKIOTransformMatlab_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/TransformMatlab

//Dependencies for the target
ITKIOTransformMatlab_LIB_DEPENDS:STATIC=general;ITKIOTransformBase;

//Value Computed by CMake
ITKIOTransformMatlab_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/TransformMatlab

//Value Computed by CMake
ITKIOVTK_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/VTK

//Dependencies for the target
ITKIOVTK_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOVTK_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/VTK

//Value Computed by CMake
ITKIOXML_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/XML

//Dependencies for the target
ITKIOXML_LIB_DEPENDS:STATIC=general;ITKEXPAT;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOXML_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/XML

//Value Computed by CMake
ITKImageAdaptors_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/ImageAdaptors

//Value Computed by CMake
ITKImageAdaptors_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/ImageAdaptors

//Value Computed by CMake
ITKImageCompare_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageCompare

//Value Computed by CMake
ITKImageCompare_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageCompare

//Value Computed by CMake
ITKImageCompose_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageCompose

//Value Computed by CMake
ITKImageCompose_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageCompose

//Value Computed by CMake
ITKImageFeature_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageFeature

//Value Computed by CMake
ITKImageFeature_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageFeature

//Value Computed by CMake
ITKImageFilterBase_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageFilterBase

//Value Computed by CMake
ITKImageFilterBase_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageFilterBase

//Value Computed by CMake
ITKImageFunction_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/ImageFunction

//Value Computed by CMake
ITKImageFunction_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/ImageFunction

//Value Computed by CMake
ITKImageFusion_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageFusion

//Value Computed by CMake
ITKImageFusion_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageFusion

//Value Computed by CMake
ITKImageGradient_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageGradient

//Value Computed by CMake
ITKImageGradient_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageGradient

//Value Computed by CMake
ITKImageGrid_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageGrid

//Value Computed by CMake
ITKImageGrid_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageGrid

//Value Computed by CMake
ITKImageIntensity_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageIntensity

//Value Computed by CMake
ITKImageIntensity_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageIntensity

//Value Computed by CMake
ITKImageLabel_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageLabel

//Value Computed by CMake
ITKImageLabel_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageLabel

//Value Computed by CMake
ITKImageNoise_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageNoise

//Value Computed by CMake
ITKImageNoise_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageNoise

//Value Computed by CMake
ITKImageSources_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageSources

//Value Computed by CMake
ITKImageSources_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageSources

//Value Computed by CMake
ITKImageStatistics_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageStatistics

//Value Computed by CMake
ITKImageStatistics_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageStatistics

//Value Computed by CMake
ITKIntegratedTest_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Nonunit/IntegratedTest

//Value Computed by CMake
ITKIntegratedTest_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Nonunit/IntegratedTest

//Value Computed by CMake
ITKJPEG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/JPEG

//Value Computed by CMake
ITKJPEG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/JPEG

//Value Computed by CMake
ITKKLMRegionGrowing_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/KLMRegionGrowing

//Dependencies for the target
ITKKLMRegionGrowing_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKKLMRegionGrowing_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/KLMRegionGrowing

//Value Computed by CMake
ITKKWSys_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/KWSys

//Value Computed by CMake
ITKKWSys_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/KWSys

//Value Computed by CMake
ITKLabelMap_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/LabelMap

//Dependencies for the target
ITKLabelMap_LIB_DEPENDS:STATIC=general;ITKStatistics;

//Value Computed by CMake
ITKLabelMap_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/LabelMap

//Value Computed by CMake
ITKLabelVoting_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/LabelVoting

//Value Computed by CMake
ITKLabelVoting_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/LabelVoting

//Value Computed by CMake
ITKLevelSets_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/LevelSets

//Value Computed by CMake
ITKLevelSets_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/LevelSets

//Value Computed by CMake
ITKLevelSetsv4_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/LevelSetsv4

//Value Computed by CMake
ITKLevelSetsv4_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/LevelSetsv4

//Value Computed by CMake
ITKMarkovRandomFieldsClassifiers_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/MarkovRandomFieldsClassifiers

//Value Computed by CMake
ITKMarkovRandomFieldsClassifiers_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/MarkovRandomFieldsClassifiers

//Value Computed by CMake
ITKMathematicalMorphology_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/MathematicalMorphology

//Value Computed by CMake
ITKMathematicalMorphology_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/MathematicalMorphology

//Value Computed by CMake
ITKMesh_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/Mesh

//Dependencies for the target
ITKMesh_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKMesh_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/Mesh

//Value Computed by CMake
ITKMetaIO_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/MetaIO

//Dependencies for the target
ITKMetaIO_LIB_DEPENDS:STATIC=general;itkzlib;general;comctl32;general;wsock32;

//Value Computed by CMake
ITKMetaIO_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/MetaIO

//Value Computed by CMake
ITKMetricsv4_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/Metricsv4

//Value Computed by CMake
ITKMetricsv4_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/Metricsv4

//Value Computed by CMake
ITKNIFTI_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/NIFTI

//Value Computed by CMake
ITKNIFTI_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/NIFTI

//Value Computed by CMake
ITKNarrowBand_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/NarrowBand

//Value Computed by CMake
ITKNarrowBand_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/NarrowBand

//Value Computed by CMake
ITKNetlib_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/Netlib

//Value Computed by CMake
ITKNetlib_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/Netlib

//Value Computed by CMake
ITKNeuralNetworks_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/NeuralNetworks

//Value Computed by CMake
ITKNeuralNetworks_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/NeuralNetworks

//Value Computed by CMake
ITKNrrdIO_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/NrrdIO

//Dependencies for the target
ITKNrrdIO_LIB_DEPENDS:STATIC=general;itkzlib;

//Value Computed by CMake
ITKNrrdIO_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/NrrdIO

//Value Computed by CMake
ITKOptimizers_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/Optimizers

//Dependencies for the target
ITKOptimizers_LIB_DEPENDS:STATIC=general;ITKStatistics;

//Value Computed by CMake
ITKOptimizers_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/Optimizers

//Value Computed by CMake
ITKOptimizersv4_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/Optimizersv4

//Dependencies for the target
ITKOptimizersv4_LIB_DEPENDS:STATIC=general;ITKOptimizers;

//Value Computed by CMake
ITKOptimizersv4_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/Optimizersv4

//Value Computed by CMake
ITKPDEDeformableRegistration_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/PDEDeformable

//Value Computed by CMake
ITKPDEDeformableRegistration_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/PDEDeformable

//Value Computed by CMake
ITKPNG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/PNG

//Value Computed by CMake
ITKPNG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/PNG

//Value Computed by CMake
ITKPath_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Path

//Dependencies for the target
ITKPath_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKPath_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Path

//Value Computed by CMake
ITKPolynomials_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/Polynomials

//Dependencies for the target
ITKPolynomials_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKPolynomials_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/Polynomials

//Value Computed by CMake
ITKQuadEdgeMeshFiltering_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/QuadEdgeMeshFiltering

//Value Computed by CMake
ITKQuadEdgeMeshFiltering_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/QuadEdgeMeshFiltering

//Value Computed by CMake
ITKQuadEdgeMesh_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/QuadEdgeMesh

//Dependencies for the target
ITKQuadEdgeMesh_LIB_DEPENDS:STATIC=general;ITKMesh;

//Value Computed by CMake
ITKQuadEdgeMesh_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/QuadEdgeMesh

//Value Computed by CMake
ITKRegionGrowing_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/RegionGrowing

//Value Computed by CMake
ITKRegionGrowing_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/RegionGrowing

//Value Computed by CMake
ITKRegistrationCommon_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/Common

//Value Computed by CMake
ITKRegistrationCommon_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/Common

//Value Computed by CMake
ITKRegistrationMethodsv4_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/RegistrationMethodsv4

//Value Computed by CMake
ITKRegistrationMethodsv4_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/RegistrationMethodsv4

//Value Computed by CMake
ITKSignedDistanceFunction_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/SignedDistanceFunction

//Value Computed by CMake
ITKSignedDistanceFunction_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/SignedDistanceFunction

//Value Computed by CMake
ITKSmoothing_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Smoothing

//Value Computed by CMake
ITKSmoothing_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Smoothing

//Value Computed by CMake
ITKSpatialFunction_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/SpatialFunction

//Value Computed by CMake
ITKSpatialFunction_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/SpatialFunction

//Value Computed by CMake
ITKSpatialObjects_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/SpatialObjects

//Dependencies for the target
ITKSpatialObjects_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;general;ITKMesh;general;ITKIOImageBase;

//Value Computed by CMake
ITKSpatialObjects_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/SpatialObjects

//Value Computed by CMake
ITKStatistics_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/Statistics

//Dependencies for the target
ITKStatistics_LIB_DEPENDS:STATIC=general;ITKCommon;general;itkNetlibSlatec;

//Value Computed by CMake
ITKStatistics_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/Statistics

//Value Computed by CMake
ITKTIFF_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/TIFF

//Value Computed by CMake
ITKTIFF_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/TIFF

//Value Computed by CMake
ITKTestKernel_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/TestKernel

//Value Computed by CMake
ITKTestKernel_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/TestKernel

//Value Computed by CMake
ITKThresholding_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Thresholding

//Value Computed by CMake
ITKThresholding_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Thresholding

//Value Computed by CMake
ITKTransform_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/Transform

//Value Computed by CMake
ITKTransform_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/Transform

//Enable compatibility with ITK3.x when possible.
ITKV3_COMPATIBILITY:BOOL=OFF

//Value Computed by CMake
ITKVNLInstantiation_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNLInstantiation

//Dependencies for the target
ITKVNLInstantiation_LIB_DEPENDS:STATIC=general;itkvnl_algo;general;itkvnl;general;itkv3p_netlib;

//Value Computed by CMake
ITKVNLInstantiation_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNLInstantiation

//Value Computed by CMake
ITKVNL_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL

//Value Computed by CMake
ITKVNL_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL

//Value Computed by CMake
ITKVTK_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Bridge/VTK

//Dependencies for the target
ITKVTK_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKVTK_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Bridge/VTK

//Value Computed by CMake
ITKVideoCore_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Video/Core

//Dependencies for the target
ITKVideoCore_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKVideoCore_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Video/Core

//Value Computed by CMake
ITKVideoFiltering_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Video/Filtering

//Value Computed by CMake
ITKVideoFiltering_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Video/Filtering

//Value Computed by CMake
ITKVideoIO_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Video/IO

//Dependencies for the target
ITKVideoIO_LIB_DEPENDS:STATIC=general;ITKVideoCore;general;ITKIOImageBase;

//Value Computed by CMake
ITKVideoIO_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Video/IO

//Value Computed by CMake
ITKVoronoi_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/Voronoi

//Value Computed by CMake
ITKVoronoi_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/Voronoi

//Value Computed by CMake
ITKWatersheds_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/Watersheds

//Dependencies for the target
ITKWatersheds_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKWatersheds_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/Watersheds

//Value Computed by CMake
ITKZLIB_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/ZLIB

//Value Computed by CMake
ITKZLIB_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/ZLIB

//Value Computed by CMake
ITK_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin

//Build the tests of module dependencies.
ITK_BUILD_ALL_MODULES_FOR_TESTS:BOOL=OFF

//Build the default ITK modules.
ITK_BUILD_DEFAULT_MODULES:BOOL=ON

//Provide here the size of your RAM Memory in GigaBytes
ITK_COMPUTER_MEMORY_SIZE:STRING=1

//Run cppcheck for static code analysis
ITK_CPPCHECK_TEST:BOOL=OFF

//Doxygen will generate Microsoft HTML help
ITK_DOXYGEN_CHM:BOOL=OFF

//Doxygen will generate additional index files for Xcode 3
ITK_DOXYGEN_DOCSET:BOOL=OFF

//Doxygen will generate Eclipse help plugin
ITK_DOXYGEN_ECLIPSEHELP:BOOL=OFF

//Doxygen will generate HTML Output
ITK_DOXYGEN_HTML:BOOL=ON

//Doxygen will generate LaTeX output
ITK_DOXYGEN_LATEX:BOOL=OFF

//Doxygen will generate Qt Compressed Help
ITK_DOXYGEN_QHP:BOOL=OFF

//Doxygen will generate RTF output optimized for Word 97
ITK_DOXYGEN_RTF:BOOL=OFF

//Doxygen will generate XML output
ITK_DOXYGEN_XML:BOOL=OFF

//Support run-time loading of shared libraries
ITK_DYNAMIC_LOADING:BOOL=ON

//Do not download source code or data from the network
ITK_FORBID_DOWNLOADS:BOOL=OFF

//Remove all legacy code completely.
ITK_LEGACY_REMOVE:BOOL=OFF

//Silence all legacy code messages.
ITK_LEGACY_SILENT:BOOL=OFF

//Value Computed by CMake
ITK_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK

//When ON, ITK will use 64 bits integers to index pixels. This
// is needed for managing images larger than 4Gb in some platforms.
ITK_USE_64BITS_IDS:BOOL=OFF

//Download and use BrainWeb data for advanced testing
ITK_USE_BRAINWEB_DATA:BOOL=OFF

//Turn on concept checking to give helpful errors at compile time
// if a type cannot be used as a template parameter.
ITK_USE_CONCEPT_CHECKING:BOOL=ON

//Use double precision fftw if found
ITK_USE_FFTWD:BOOL=OFF

//Use single precision fftw if found
ITK_USE_FFTWF:BOOL=OFF

//Use single precision for origin/spacing/directions in itk::Image
ITK_USE_FLOAT_SPACE_PRECISION:BOOL=OFF

//GPU acceleration via OpenCL
ITK_USE_GPU:BOOL=OFF

//Enable the use of KWStyle for checking coding style.
ITK_USE_KWSTYLE:BOOL=OFF

//Turn on Strict concept checking to give more stringent errors
// at compile time if a type cannot be used as a template parameter.
ITK_USE_STRICT_CONCEPT_CHECKING:BOOL=OFF

//Use an outside build of double-conversion
ITK_USE_SYSTEM_DOUBLECONVERSION:BOOL=OFF

//Use system-installed expat
ITK_USE_SYSTEM_EXPAT:BOOL=OFF

//Use an installed version of fftw
ITK_USE_SYSTEM_FFTW:BOOL=OFF

//Use an outside build of GDCM.
ITK_USE_SYSTEM_GDCM:BOOL=OFF

//Use an outside build of HDF5.
ITK_USE_SYSTEM_HDF5:BOOL=OFF

//Use an outside build of JPEG.
ITK_USE_SYSTEM_JPEG:BOOL=OFF

//Use the system's libraries by default.
//\nIf this is not set during the initial configuration, it will
// have no effect.
ITK_USE_SYSTEM_LIBRARIES:BOOL=OFF

//Use system-installed png
ITK_USE_SYSTEM_PNG:BOOL=OFF

//Use system SZIP. If OFF, SZIP is built as an external project.
ITK_USE_SYSTEM_SZIP:BOOL=OFF

//Use system-installed tiff
ITK_USE_SYSTEM_TIFF:BOOL=OFF

//Use an outside build of VXL.
ITK_USE_SYSTEM_VXL:BOOL=OFF

//Use system ZLIB. If OFF, ZLIB is built as an external project.
ITK_USE_SYSTEM_ZLIB:BOOL=OFF

//Build Java support (Currently not supported)
ITK_WRAP_JAVA:BOOL=OFF

//Build Perl support (Currently not supported)
ITK_WRAP_PERL:BOOL=OFF

//Build Python support
ITK_WRAP_PYTHON:BOOL=OFF

//Build Ruby support (Currently not supported)
ITK_WRAP_RUBY:BOOL=OFF

//Build Tcl support (Currently not supported)
ITK_WRAP_TCL:BOOL=OFF

//Dependencies for the target
ITKgiftiio_LIB_DEPENDS:STATIC=general;ITKEXPAT;general;ITKznz;general;ITKniftiio;

//Dependencies for the target
ITKniftiio_LIB_DEPENDS:STATIC=general;ITKznz;

//Value Computed by CMake
ITKv4ImageRegistration_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/RegistrationITKv4

//Value Computed by CMake
ITKv4ImageRegistration_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/RegistrationITKv4

//Dependencies for the target
ITKznz_LIB_DEPENDS:STATIC=general;itkzlib;

//Value Computed by CMake
ImageExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/DataRepresentation/Image

//Value Computed by CMake
ImageExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/DataRepresentation/Image

//Value Computed by CMake
ImageSegmentation_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/Segmentation

//Value Computed by CMake
ImageSegmentation_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/Segmentation

//Value Computed by CMake
IteratorExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/Iterators

//Value Computed by CMake
IteratorExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/Iterators

//Path to the KWStyle executable
KWSTYLE_EXECUTABLE:FILEPATH=KWSTYLE_EXECUTABLE-NOTFOUND

//Command to build the project
MAKECOMMAND:STRING="C:\Program Files (x86)\CMake\bin\cmake.exe" --build . --config "${CTEST_CONFIGURATION_TYPE}"

//The number of headers in a HeaderTest code.
MAXIMUM_NUMBER_OF_HEADERS:STRING=35

//Path to the memory checking command, used for memory error detection.
MEMORYCHECK_COMMAND:FILEPATH=MEMORYCHECK_COMMAND-NOTFOUND

//File that contains suppressions for the memory checker
MEMORYCHECK_SUPPRESSIONS_FILE:FILEPATH=

//Value Computed by CMake
MeshExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/DataRepresentation/Mesh

//Value Computed by CMake
MeshExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/DataRepresentation/Mesh

//AnalyzeObjectMapIO plugin for ITK. From Insight Journal article
// with handle: http://hdl.handle.net/1926/593
Module_AnalyzeObjectMapIO:BOOL=OFF

//This module contains wrapper code to convert ITK Image's to
//\n  NumPy array's and back.  For example:
//\n
//\n    import itk
//\n    ImageType = itk.Image[itk.F, 2]
//\n    image = ImageType.New()
//\n    array = itk.PyBuffer[ImageType].GetArrayFromImage(image)
//\n    image = itk.PyBuffer[ImageType].GetImageFromArray(array)
//\n
//\n  See http://insight-journal.org/browse/publication/85
//\n      http://hdl.handle.net/1926/188
Module_BridgeNumPy:BOOL=OFF

//This module contains a filter to compute higher order
//\n  accurate numerical derivatives and gradients from an input
// scalar image.
//\n  field from a displacement field image.
//\n  Higher Order Accurate Derivative and Gradient Calculation
// in ITK
//\n  http://www.insight-journal.org/browse/publication/775
//\n  http://hdl.handle.net/10380/3231
Module_HigherOrderAccurateGradient:BOOL=OFF

//FDFImageIO plugin for ITK. Authors Gleen Pierce/Nick Tustison/Kent
// Williams
Module_IOFDF:BOOL=OFF

//This module contains classes for reading and writing QuadEdgeMeshes
// using
//\n  the STL (STereoLithography)file format. http://hdl.handle.net/10380/3452
Module_IOSTL:BOOL=OFF

//The modules contains classes for reading spatial transform from
// DICOM
//\n  files. See http://www.insight-journal.org/browse/publication/923
//\n             http://hdl.handle.net/10380/3468
Module_IOTransformDCMTK:BOOL=OFF

//Request building ITKDCMTK
Module_ITKDCMTK:BOOL=OFF

//Request building ITKDeprecated
Module_ITKDeprecated:BOOL=OFF

//Request building ITKIODCMTK
Module_ITKIODCMTK:BOOL=OFF

//Request building ITKIOMINC
Module_ITKIOMINC:BOOL=OFF

//Request building ITKIOPhilipsREC
Module_ITKIOPhilipsREC:BOOL=OFF

//Request building ITKLevelSetsv4Visualization
Module_ITKLevelSetsv4Visualization:BOOL=OFF

//Request building ITKMINC
Module_ITKMINC:BOOL=OFF

//Request building ITKOpenJPEG
Module_ITKOpenJPEG:BOOL=OFF

//Request building ITKReview
Module_ITKReview:BOOL=OFF

//Request building ITKV3Compatibility
Module_ITKV3Compatibility:BOOL=OFF

//Request building ITKVideoBridgeOpenCV
Module_ITKVideoBridgeOpenCV:BOOL=OFF

//Request building ITKVideoBridgeVXL
Module_ITKVideoBridgeVXL:BOOL=OFF

//Request building ITKVtkGlue
Module_ITKVtkGlue:BOOL=OFF

//Classes performing morphology efficiently on label images.
//\n  Label collisions are consistently handled, and
//\n  operations are efficient (approximately constant time wrt
//\n  structuring element size). Only circular/spherical/hyperspherical
//\n  structuring elements are supported.
//\n  http://www.insight-journal.org/browse/publication/228
//\n  http://hdl.handle.net/10380/3399
Module_LabelErodeDilate:BOOL=OFF

//Framework for determining the sizes of lesions in medical images.
Module_LesionSizingToolkit:BOOL=OFF

//MGHIO ImageIO plugin for ITK
Module_MGHIO:BOOL=OFF

//http://www.insight-journal.org/browse/publication/213
//\n
Module_MinimalPathExtraction:BOOL=OFF

//Classes performing morphology using parabolic functions.
//\n  Fast distance transforms and binary erosions/dilations/openings/closings
//\n  by spheres, sharpenings and grayscale operations.
//\n  http://www.insight-journal.org/browse/publication/228
//\n  http://hdl.handle.net/1926/1370
Module_ParabolicMorphology:BOOL=OFF

//SCIFIO (Bioformats) ImageIO plugin for ITK
Module_SCIFIO:BOOL=OFF

//A class to perform automatic skull-stripping for neuroimage analysis.
Module_SkullStrip:BOOL=OFF

//GPU and CPU Young & Van Vliet Recursive Gaussian Smoothing Filter:
// http://hdl.handle.net/10380/3425
Module_SmoothingRecursiveYvvGaussianFilter:BOOL=OFF

//This module builds the examples found at http://itk.org/ITKExamples/
Module_SphinxExamples:BOOL=OFF

//This module contains filter called
//\nitk::SplitComponentsImageFilter.  This filter generates component
// images from an
//\nitk::Image of, for example, itk::Vector, itk::CovariantVector,
// or
//\nitk::SymmetricSecondRankTensor. http://hdl.handle.net/10380/3230
Module_SplitComponents:BOOL=OFF

//Triangle and edge based QuadEdgeMesh subdivision filters.
//\n
//\nSee the following Insight Journal's publication:
//\n
//\n  Wanlin Zhu, "Triangle Mesh Subdivision"
//\n  http://www.insight-journal.org/browse/publication/831
//\n  http://hdl.handle.net/10380/3307
Module_SubdivisionQuadEdgeMeshFilter:BOOL=OFF

//A module to perform variational image registration. http://hdl.handle.net/10380/3460
Module_VariationalRegistration:BOOL=OFF

//A collection of examples that illustrate how to use ITK.
Module_WikiExamples:BOOL=OFF

//Value Computed by CMake
NIFTI_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/NIFTI/src/nifti

//Value Computed by CMake
NIFTI_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/NIFTI/src/nifti

//Value Computed by CMake
NumericsExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/Numerics

//Value Computed by CMake
NumericsExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/Numerics

//Path to a program.
P4COMMAND:FILEPATH=P4COMMAND-NOTFOUND

//Path to a program.
PERL_EXECUTABLE:FILEPATH=PERL_EXECUTABLE-NOTFOUND

//Path to a program.
PYTHON_EXECUTABLE:FILEPATH=PYTHON_EXECUTABLE-NOTFOUND

//Value Computed by CMake
PathExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/DataRepresentation/Path

//Value Computed by CMake
PathExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/DataRepresentation/Path

//Path to scp command, used by CTest for submitting results to
// a Dart server
SCPCOMMAND:FILEPATH=SCPCOMMAND-NOTFOUND

//Name of the computer/site where compile is being run
SITE:STRING=TUNDE_SZILAGYI

//Path to the SLURM sbatch executable
SLURM_SBATCH_COMMAND:FILEPATH=SLURM_SBATCH_COMMAND-NOTFOUND

//Path to the SLURM srun executable
SLURM_SRUN_COMMAND:FILEPATH=SLURM_SRUN_COMMAND-NOTFOUND

//Path to a program.
SVNCOMMAND:FILEPATH=SVNCOMMAND-NOTFOUND

//Value Computed by CMake
SpatialObjectsExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/SpatialObjects

//Value Computed by CMake
SpatialObjectsExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/SpatialObjects

//Value Computed by CMake
StatisticsExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/Statistics

//Value Computed by CMake
StatisticsExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/Statistics

//Enable C++0x standard extensions
VCL_INCLUDE_CXX_0X:BOOL=OFF

//Whether vnl_vector/vnl_matrix accessor methods check index bounds.
VNL_CONFIG_CHECK_BOUNDS:BOOL=ON

//Enable Streaming SIMD Extensions 2 optimisations (hardware dependant).
// Currently broken. For use by VNL developers only.
VNL_CONFIG_ENABLE_SSE2:BOOL=OFF

//Enable Streaming SIMD Extensions 2 implementation of rounding
// (hardware dependant).
VNL_CONFIG_ENABLE_SSE2_ROUNDING:BOOL=ON

//Whether backward-compatibility methods are provided by vnl.
VNL_CONFIG_LEGACY_METHODS:BOOL=OFF

//Whether thread-safe vnl implementations are used.
VNL_CONFIG_THREAD_SAFE:BOOL=ON

//v3p include files
VTHREEP_INCLUDE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/v3p

//v3p include files
VTHREEP_INSTALL_INCLUDE_DIR:STATIC=C:/Program Files/ITK/include/vxl/v3p

//Re-run the configuration tests?
VXL_UPDATE_CONFIGURATION:BOOL=OFF

//Dependencies for the target
gdcmCommon_LIB_DEPENDS:STATIC=general;ws2_32;general;crypt32;

//Dependencies for the target
gdcmDICT_LIB_DEPENDS:STATIC=general;gdcmDSED;general;gdcmIOD;

//Dependencies for the target
gdcmDSED_LIB_DEPENDS:STATIC=general;gdcmCommon;general;itkzlib;

//Dependencies for the target
gdcmIOD_LIB_DEPENDS:STATIC=general;gdcmDSED;general;gdcmCommon;general;ITKEXPAT;

//Dependencies for the target
gdcmMEXD_LIB_DEPENDS:STATIC=general;gdcmMSFF;general;gdcmDICT;general;gdcmDSED;general;gdcmIOD;general;gdcmsocketxx;general;ws2_32;

//Dependencies for the target
gdcmMSFF_LIB_DEPENDS:STATIC=general;gdcmIOD;general;gdcmDSED;general;gdcmDICT;general;gdcmjpeg8;general;gdcmjpeg12;general;gdcmjpeg16;general;gdcmopenjpeg;general;gdcmcharls;general;rpcrt4;

//Dependencies for target
gdcmcharls_LIB_DEPENDS:STATIC=

//Dependencies for target
gdcmjpeg12_LIB_DEPENDS:STATIC=

//Dependencies for target
gdcmjpeg16_LIB_DEPENDS:STATIC=

//Dependencies for target
gdcmjpeg8_LIB_DEPENDS:STATIC=

//Dependencies for target
gdcmopenjpeg_LIB_DEPENDS:STATIC=

//Dependencies for the target
gdcmsocketxx_LIB_DEPENDS:STATIC=general;ws2_32.lib;

//Value Computed by CMake
gifticlib_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GIFTI/src/gifticlib

//Value Computed by CMake
gifticlib_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GIFTI/src/gifticlib

//Dependencies for the target
itkNetlibSlatec_LIB_DEPENDS:STATIC=general;itkv3p_netlib;

//Value Computed by CMake
itkdicomparser_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/DICOMParser/src/DICOMParser

//Value Computed by CMake
itkdicomparser_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/DICOMParser/src/DICOMParser

//Dependencies for target
itkdouble-conversion_LIB_DEPENDS:STATIC=

//Dependencies for the target
itkhdf5_LIB_DEPENDS:STATIC=general;kernel32;general;ws2_32;general;wsock32;general;itkzlib;

//Dependencies for the target
itkhdf5_cpp_LIB_DEPENDS:STATIC=general;itkhdf5;

//Dependencies for target
itkjpeg_LIB_DEPENDS:STATIC=

//Dependencies for the target
itkpng_LIB_DEPENDS:STATIC=general;itkzlib;

//Value Computed by CMake
itksys_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/KWSys/src/KWSys

//Dependencies for the target
itksys_LIB_DEPENDS:STATIC=general;ws2_32;general;Psapi;

//Value Computed by CMake
itksys_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/KWSys/src/KWSys

//Dependencies for the target
itktestlib_LIB_DEPENDS:STATIC=general;itkvcl;

//Dependencies for the target
itktiff_LIB_DEPENDS:STATIC=general;itkzlib;general;itkjpeg;

//Dependencies for target
itkv3p_lsqr_LIB_DEPENDS:STATIC=

//Dependencies for target
itkv3p_netlib_LIB_DEPENDS:STATIC=

//Dependencies for target
itkvcl_LIB_DEPENDS:STATIC=

//Dependencies for the target
itkvnl_LIB_DEPENDS:STATIC=general;itkvcl;

//Dependencies for the target
itkvnl_algo_LIB_DEPENDS:STATIC=general;itkv3p_netlib;general;itkvnl;general;itkv3p_lsqr;

//Dependencies for target
itkzlib_LIB_DEPENDS:STATIC=

//Value Computed by CMake
lsqr_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/v3p/netlib/linalg

//Value Computed by CMake
lsqr_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/v3p/netlib/linalg

//Value Computed by CMake
netlib_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/v3p/netlib

//Value Computed by CMake
netlib_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/v3p/netlib

//Value Computed by CMake
vcl_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/vcl

//Value Computed by CMake
vcl_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/vcl

//Value Computed by CMake
vnl_algo_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/core/vnl/algo

//Value Computed by CMake
vnl_algo_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/core/vnl/algo

//Value Computed by CMake
vthreep_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/v3p

//Value Computed by CMake
vthreep_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/v3p

//Value Computed by CMake
vxl_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl

//Value Computed by CMake
vxl_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl

//Value Computed by CMake
vxl_config_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/config/cmake/config

//Value Computed by CMake
vxl_config_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/config/cmake/config

//Value Computed by CMake
vxlcore_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/core

//Value Computed by CMake
vxlcore_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/core


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# INTERNAL cache entries
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//Checking IF overflows normally converting floating-point to integer
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//Have includes windows.h;io.h;setjmp.h;stddef.h;stdint.h;string.h;sys/stat.h;sys/time.h
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//Checking IF converting from long double to integers works
H5_LDOUBLE_TO_INTEGER_WORKS:INTERNAL=1
//Result of TRY_COMPILE
H5_LDOUBLE_TO_INTEGER_WORKS_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LDOUBLE_TO_INTEGER_WORKS_RUN:INTERNAL=0
//Checking IF correctly converting long double to (unsigned) long
// long values
H5_LDOUBLE_TO_LLONG_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
H5_LDOUBLE_TO_LLONG_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LDOUBLE_TO_LLONG_ACCURATE_RUN:INTERNAL=0
//Checking IF correctly converting long double to unsigned int
// values
H5_LDOUBLE_TO_UINT_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
H5_LDOUBLE_TO_UINT_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LDOUBLE_TO_UINT_ACCURATE_RUN:INTERNAL=0
//Checking IF compiling long long to floating-point typecasts work
H5_LLONG_TO_FP_CAST_WORKS:INTERNAL=1
//Checking IF correctly converting (unsigned) long long to long
// double values
H5_LLONG_TO_LDOUBLE_CORRECT:INTERNAL=1
//Result of TRY_COMPILE
H5_LLONG_TO_LDOUBLE_CORRECT_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LLONG_TO_LDOUBLE_CORRECT_RUN:INTERNAL=0
//Checking IF alignment restrictions are strictly enforced
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//Result of TRY_COMPILE
H5_NO_ALIGNMENT_RESTRICTIONS_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
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//Width for printf for type `long long' or `__int64', us. `ll
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//CHECK_TYPE_SIZE: sizeof(char)
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//CHECK_TYPE_SIZE: sizeof(double)
H5_SIZEOF_DOUBLE:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(float)
H5_SIZEOF_FLOAT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int)
H5_SIZEOF_INT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int16_t)
H5_SIZEOF_INT16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(int32_t)
H5_SIZEOF_INT32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int64_t)
H5_SIZEOF_INT64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(int8_t)
H5_SIZEOF_INT8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int_fast16_t)
H5_SIZEOF_INT_FAST16_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int_fast32_t)
H5_SIZEOF_INT_FAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int_fast64_t)
H5_SIZEOF_INT_FAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(int_fast8_t)
H5_SIZEOF_INT_FAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int_least16_t)
H5_SIZEOF_INT_LEAST16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(int_least32_t)
H5_SIZEOF_INT_LEAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int_least64_t)
H5_SIZEOF_INT_LEAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(int_least8_t)
H5_SIZEOF_INT_LEAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(long)
H5_SIZEOF_LONG:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(long double)
H5_SIZEOF_LONG_DOUBLE:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(long long)
H5_SIZEOF_LONG_LONG:INTERNAL=8
//SizeOf for off64_t
H5_SIZEOF_OFF64_T:INTERNAL=0
//CHECK_TYPE_SIZE: sizeof(off_t)
H5_SIZEOF_OFF_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(short)
H5_SIZEOF_SHORT:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(size_t)
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//SizeOf for ssize_t
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//CHECK_TYPE_SIZE: sizeof(uint16_t)
H5_SIZEOF_UINT16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(uint32_t)
H5_SIZEOF_UINT32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint64_t)
H5_SIZEOF_UINT64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(uint8_t)
H5_SIZEOF_UINT8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(uint_fast16_t)
H5_SIZEOF_UINT_FAST16_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint_fast32_t)
H5_SIZEOF_UINT_FAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint_fast64_t)
H5_SIZEOF_UINT_FAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(uint_fast8_t)
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//CHECK_TYPE_SIZE: sizeof(uint_least16_t)
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//CHECK_TYPE_SIZE: sizeof(uint_least32_t)
H5_SIZEOF_UINT_LEAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint_least64_t)
H5_SIZEOF_UINT_LEAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(uint_least8_t)
H5_SIZEOF_UINT_LEAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(unsigned)
H5_SIZEOF_UNSIGNED:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(__int64)
H5_SIZEOF___INT64:INTERNAL=8
//Checking IF compiling unsigned long long to floating-point typecasts
// work
H5_ULLONG_TO_FP_CAST_WORKS:INTERNAL=1
//Checking IF converting unsigned long long to long double with
// precision
H5_ULLONG_TO_LDOUBLE_PRECISION:INTERNAL=
//Result of TRY_COMPILE
H5_ULLONG_TO_LDOUBLE_PRECISION_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_ULLONG_TO_LDOUBLE_PRECISION_RUN:INTERNAL=1
//Checking IF accurately converting unsigned long to float values
H5_ULONG_TO_FLOAT_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
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//Result of TRY_RUN
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//Checking IF accurately converting unsigned long long to floating-point
// values
H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE:INTERNAL=
//Result of TRY_COMPILE
H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE_RUN:INTERNAL=1
//Have include assert.h
HAVE_ASSERT_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_CHAR:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_DOUBLE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_FLOAT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_UNSIGNED_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_VOID_P:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_WORDS_BIGENDIAN:INTERNAL=TRUE
//Have includes dlfcn.h
HAVE_DLFCN_H:INTERNAL=
//Have include emmintrin.h
HAVE_EMMINTRIN_H:INTERNAL=1
//Have include fcntl.h
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//Have include fenv.h
HAVE_FENV_H:INTERNAL=1
//Have function floor
HAVE_FLOOR:INTERNAL=1
//Have function getopt
HAVE_GETOPT:INTERNAL=
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_CHAR:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_DOUBLE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_FLOAT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_LONG_DOUBLE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_LONG_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_OFF64_T:INTERNAL=FALSE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_OFF_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_SIZE_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_SSIZE_T:INTERNAL=FALSE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UNSIGNED:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF___INT64:INTERNAL=TRUE
//Have includes ieeefp.h
HAVE_IEEEFP_H:INTERNAL=
//Have include inttypes.h
HAVE_INTTYPES_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_IOEO_COMPILED:INTERNAL=TRUE
//Result of TRY_RUN
HAVE_IOEO_EXITCODE:INTERNAL=0
//Have function isascii
HAVE_ISASCII:INTERNAL=
// 
HAVE_ITK_CPP_FUNCTION:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF_CHAR:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF_LONG_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF___INT64:INTERNAL=TRUE
//Have include limits.h
HAVE_LIMITS_H:INTERNAL=1
//Have include malloc.h
HAVE_MALLOC_H:INTERNAL=1
//Have function memmove
HAVE_MEMMOVE:INTERNAL=1
//Have include memory.h
HAVE_MEMORY_H:INTERNAL=1
//Have function memset
HAVE_MEMSET:INTERNAL=1
//Have function mmap
HAVE_MMAP:INTERNAL=
//Have function pow
HAVE_POW:INTERNAL=1
//Result of TRY_COMPILE
HAVE_QNANHIBIT_VALUE:INTERNAL=TRUE
//Have include search.h
HAVE_SEARCH_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_SIZEOF_LONG:INTERNAL=TRUE
//Have function sqrt
HAVE_SQRT:INTERNAL=1
//Have include stddef.h
HAVE_STDDEF_H:INTERNAL=1
//Have include stdint.h
HAVE_STDINT_H:INTERNAL=1
//Have include stdlib.h
HAVE_STDLIB_H:INTERNAL=1
//Have function strcasecmp
HAVE_STRCASECMP:INTERNAL=
//Have function strchr
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//Have includes strings.h
HAVE_STRINGS_H:INTERNAL=
//Have include string.h
HAVE_STRING_H:INTERNAL=1
//Have function strrchr
HAVE_STRRCHR:INTERNAL=1
//Have function strstr
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//Have function strtol
HAVE_STRTOL:INTERNAL=1
//Have function strtoul
HAVE_STRTOUL:INTERNAL=1
//Have include sys/stat.h
HAVE_SYS_STAT_H:INTERNAL=1
//Have includes sys/time.h
HAVE_SYS_TIME_H:INTERNAL=
//Have include sys/types.h
HAVE_SYS_TYPES_H:INTERNAL=1
//Have include unistd.h
HAVE_UNISTD_H:INTERNAL=
//Result of TRY_COMPILE
HAVE_VXL_BIG_ENDIAN:INTERNAL=TRUE
//Have include windows.h
HAVE_WINDOWS_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_WORDS_BIGENDIAN:INTERNAL=TRUE
//Allow External Library Building
HDF5_ALLOW_EXTERNAL_SUPPORT:INTERNAL=OFF
//Build HDF5 C++ Library
HDF5_BUILD_CPP_LIB:INTERNAL=ON
//Build HIGH Level HDF5 Library
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//Disable compiler warnings
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//ADVANCED property for variable: HDF5_ENABLE_CODESTACK
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//Enable code coverage for Libraries and Programs
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//Enable deprecated public API symbols
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//ADVANCED property for variable: HDF5_ENABLE_GPFS
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//Enable GPFS hints for the MPI/POSIX file driver
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//Enable datasets larger than memory
HDF5_ENABLE_HSIZET:INTERNAL=ON
//Enable support for large (64-bit) files on Linux.
HDF5_ENABLE_LARGE_FILE:INTERNAL=ON
//Enable parallel build (requires MPI)
HDF5_ENABLE_PARALLEL:INTERNAL=OFF
//Use SZip Filter
HDF5_ENABLE_SZIP_SUPPORT:INTERNAL=OFF
//Enable Threadsafety
HDF5_ENABLE_THREADSAFE:INTERNAL=OFF
//Enable API tracing capability
HDF5_ENABLE_TRACE:INTERNAL=OFF
//Indicate that a memory checker is used
HDF5_ENABLE_USING_MEMCHECKER:INTERNAL=OFF
//Enable Zlib Filters
HDF5_ENABLE_Z_LIB_SUPPORT:INTERNAL=ON
//ADVANCED property for variable: HDF5_Enable_Clear_File_Buffers
HDF5_Enable_Clear_File_Buffers-ADVANCED:INTERNAL=1
//Securely clear file buffers before writing to file
HDF5_Enable_Clear_File_Buffers:INTERNAL=ON
//ADVANCED property for variable: HDF5_Enable_Instrument
HDF5_Enable_Instrument-ADVANCED:INTERNAL=1
//Instrument The library
HDF5_Enable_Instrument:INTERNAL=OFF
//Used to pass variables between directories
HDF5_LIBRARIES_TO_EXPORT:INTERNAL=itkhdf5;itkhdf5_cpp
//ADVANCED property for variable: HDF5_METADATA_TRACE_FILE
HDF5_METADATA_TRACE_FILE-ADVANCED:INTERNAL=1
//Enable metadata trace file collection
HDF5_METADATA_TRACE_FILE:INTERNAL=OFF
//CPACK - include external libraries
HDF5_PACKAGE_EXTLIBS:INTERNAL=OFF
//Result of TRY_COMPILE
HDF5_PRINTF_LL_TEST_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
HDF5_PRINTF_LL_TEST_RUN:INTERNAL=0
//ADVANCED property for variable: HDF5_STRICT_FORMAT_CHECKS
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//Whether to perform strict file format checks
HDF5_STRICT_FORMAT_CHECKS:INTERNAL=OFF
//Use the HDF5 1.6.x API by default
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//Use the FLETCHER32 Filter
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//Use the NBIT Filter
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//Use the SCALEOFFSET Filter
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//Use the PACKED BITS feature in h5dump
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//IF data accuracy is guaranteed during data conversions
HDF5_WANT_DATA_ACCURACY:INTERNAL=ON
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//exception handling functions is checked during data conversions
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//Use Legacy Names for Libraries and Programs
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//ADVANCED property for variable: HGCOMMAND
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//Result of TRY_COMPILE
INLINE_TEST___inline:INTERNAL=TRUE
//Result of TRY_COMPILE
INLINE_TEST___inline__:INTERNAL=FALSE
//Result of TRY_COMPILE
INLINE_TEST_inline:INTERNAL=TRUE
//Request building Bridge modules
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//Request building Compatibility modules
ITKGroup_Compatibility:INTERNAL=OFF
//Request building Core modules
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//Request building Filtering modules
ITKGroup_Filtering:INTERNAL=OFF
//Request building IO modules
ITKGroup_IO:INTERNAL=OFF
//Request building Nonunit modules
ITKGroup_Nonunit:INTERNAL=OFF
//Request building Numerics modules
ITKGroup_Numerics:INTERNAL=OFF
//Request building Registration modules
ITKGroup_Registration:INTERNAL=OFF
//Request building Remote modules
ITKGroup_Remote:INTERNAL=OFF
//Request building Segmentation modules
ITKGroup_Segmentation:INTERNAL=OFF
//Request building ThirdParty modules
ITKGroup_ThirdParty:INTERNAL=OFF
//Request building Video modules
ITKGroup_Video:INTERNAL=OFF
//ADVANCED property for variable: ITK_BUILD_ALL_MODULES_FOR_TESTS
ITK_BUILD_ALL_MODULES_FOR_TESTS-ADVANCED:INTERNAL=1
//Test ITK_COMPILER_DOES_NOT_NEED_MSSE2_FLAG
ITK_COMPILER_DOES_NOT_NEED_MSSE2_FLAG:INTERNAL=
//Result of TRY_COMPILE
ITK_COMPILER_HAS_BLOCKS:INTERNAL=FALSE
//Test ITK_COMPILER_SUPPORTS_SSE2_32
ITK_COMPILER_SUPPORTS_SSE2_32:INTERNAL=1
//Test ITK_COMPILER_SUPPORTS_SSE2_64
ITK_COMPILER_SUPPORTS_SSE2_64:INTERNAL=1
//ADVANCED property for variable: ITK_COMPUTER_MEMORY_SIZE
ITK_COMPUTER_MEMORY_SIZE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_CPPCHECK_TEST
ITK_CPPCHECK_TEST-ADVANCED:INTERNAL=1
//Result of TRY_COMPILE
ITK_CPP_FUNCTION:INTERNAL=TRUE
//ADVANCED property for variable: ITK_DOXYGEN_CHM
ITK_DOXYGEN_CHM-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_DOCSET
ITK_DOXYGEN_DOCSET-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_ECLIPSEHELP
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//ADVANCED property for variable: ITK_DOXYGEN_HTML
ITK_DOXYGEN_HTML-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_LATEX
ITK_DOXYGEN_LATEX-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_QHP
ITK_DOXYGEN_QHP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_RTF
ITK_DOXYGEN_RTF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_XML
ITK_DOXYGEN_XML-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DYNAMIC_LOADING
ITK_DYNAMIC_LOADING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_FORBID_DOWNLOADS
ITK_FORBID_DOWNLOADS-ADVANCED:INTERNAL=1
//Remove code that will become legacy in future releases completely.
ITK_FUTURE_LEGACY_REMOVE:INTERNAL=0
//Result of TRY_COMPILE
ITK_HAS_CPP11_ALIGNAS:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_HAS_CPP11_TYPETRAITS:INTERNAL=TRUE
//Result of TRY_COMPILE
ITK_HAS_GNU_ATTRIBUTE_ALIGNED:INTERNAL=FALSE
//Have symbol InterlockedAdd
ITK_HAS_INTERLOCKEDADD:INTERNAL=1
//Have include tr1/type_traits
ITK_HAS_STLTR1_TR1_TYPE_TRAITS:INTERNAL=
//Have include type_traits
ITK_HAS_STLTR1_TYPE_TRAITS:INTERNAL=1
//ADVANCED property for variable: ITK_LEGACY_REMOVE
ITK_LEGACY_REMOVE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_LEGACY_SILENT
ITK_LEGACY_SILENT-ADVANCED:INTERNAL=1
//Result of TRY_COMPILE
ITK_SUPPORTS_FDSTREAM_HPP:INTERNAL=TRUE
//Result of TRY_COMPILE
ITK_SUPPORTS_TEMPLATED_FRIEND_FUNCTION_WITH_EMPTY_BRACKETS:INTERNAL=TRUE
//Result of TRY_COMPILE
ITK_SUPPORTS_TEMPLATED_FRIEND_FUNCTION_WITH_NULL_STRING:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_SUPPORTS_TEMPLATED_FRIEND_FUNCTION_WITH_TEMPLATE_ARGUMENTS:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_SUPPORTS_WCHAR_T_FILENAME_CSTYLEIO:INTERNAL=TRUE
//Result of TRY_COMPILE
ITK_SUPPORTS_WCHAR_T_FILENAME_IOSTREAMS_CONSTRUCTORS:INTERNAL=TRUE
//ADVANCED property for variable: ITK_USE_64BITS_IDS
ITK_USE_64BITS_IDS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_BRAINWEB_DATA
ITK_USE_BRAINWEB_DATA-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_CONCEPT_CHECKING
ITK_USE_CONCEPT_CHECKING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_FFTWD
ITK_USE_FFTWD-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_FFTWF
ITK_USE_FFTWF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_FLOAT_SPACE_PRECISION
ITK_USE_FLOAT_SPACE_PRECISION-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_GPU
ITK_USE_GPU-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_KWSTYLE
ITK_USE_KWSTYLE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_STRICT_CONCEPT_CHECKING
ITK_USE_STRICT_CONCEPT_CHECKING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_DOUBLECONVERSION
ITK_USE_SYSTEM_DOUBLECONVERSION-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_EXPAT
ITK_USE_SYSTEM_EXPAT-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_FFTW
ITK_USE_SYSTEM_FFTW-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_GDCM
ITK_USE_SYSTEM_GDCM-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_HDF5
ITK_USE_SYSTEM_HDF5-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_JPEG
ITK_USE_SYSTEM_JPEG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_LIBRARIES
ITK_USE_SYSTEM_LIBRARIES-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_PNG
ITK_USE_SYSTEM_PNG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_SZIP
ITK_USE_SYSTEM_SZIP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_TIFF
ITK_USE_SYSTEM_TIFF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_VXL
ITK_USE_SYSTEM_VXL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_ZLIB
ITK_USE_SYSTEM_ZLIB-ADVANCED:INTERNAL=1
//Build external languages support
ITK_WRAPPING:INTERNAL=OFF
//ADVANCED property for variable: ITK_WRAP_JAVA
ITK_WRAP_JAVA-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_WRAP_PERL
ITK_WRAP_PERL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_WRAP_RUBY
ITK_WRAP_RUBY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_WRAP_TCL
ITK_WRAP_TCL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: KWSTYLE_EXECUTABLE
KWSTYLE_EXECUTABLE-ADVANCED:INTERNAL=1
//Result of TRY_RUN
KWSYS_CHAR_IS_SIGNED:INTERNAL=0
//Result of TRY_COMPILE
KWSYS_CHAR_IS_SIGNED_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ARGUMENT_DEPENDENT_LOOKUP_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ATOLL_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ATOL_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_CSTDDEF_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_CSTDIO_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ENVIRON_IN_STDLIB_H_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_FULL_SPECIALIZATION_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_LONG_LONG_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_MEMBER_TEMPLATES_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_NULL_TEMPLATE_ARGS_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_RLIMIT64_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_SETENV_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_UNSETENV_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_UTIMENSAT_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_UTIMES_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS__ATOI64_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS___INT64_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_SAME_LONG_AND___INT64_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_SAME_LONG_LONG_AND___INT64_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_C_HAS_PTRDIFF_T_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_C_HAS_SSIZE_T_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_C_TYPE_MACROS_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_IOS_HAVE_BINARY_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_IOS_HAVE_STD_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_IOS_USE_ANSI_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_IOS_USE_SSTREAM_COMPILED:INTERNAL=TRUE
//Checking for Large File Support failed to compile.
KWSYS_LFS_WORKS:INTERNAL=-1
//Result of TRY_COMPILE
KWSYS_LFS_WORKS_COMPILED:INTERNAL=FALSE
//CHECK_TYPE_SIZE: sizeof(char)
KWSYS_SIZEOF_CHAR:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int)
KWSYS_SIZEOF_INT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(long)
KWSYS_SIZEOF_LONG:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(long long)
KWSYS_SIZEOF_LONG_LONG:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(short)
KWSYS_SIZEOF_SHORT:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(__int64)
KWSYS_SIZEOF___INT64:INTERNAL=8
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_MAX_SIZE_ARGUMENT_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_OBJECTS_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_REBIND_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_TEMPLATE_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ITERATOR_TRAITS_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_WSTRING_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAVE_STD_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_STRING_HAVE_NEQ_CHAR_COMPILED:INTERNAL=TRUE
//Have includes sys/types.h;ifaddrs.h
KWSYS_SYS_HAS_IFADDRS_H:INTERNAL=
//Have symbol GetProcessMemoryInfo
KWSYS_SYS_HAS_PSAPI:INTERNAL=1
//ADVANCED property for variable: MAKECOMMAND
MAKECOMMAND-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MAXIMUM_NUMBER_OF_HEADERS
MAXIMUM_NUMBER_OF_HEADERS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MEMORYCHECK_COMMAND
MEMORYCHECK_COMMAND-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MEMORYCHECK_SUPPRESSIONS_FILE
MEMORYCHECK_SUPPRESSIONS_FILE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_AnalyzeObjectMapIO
Module_AnalyzeObjectMapIO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_BridgeNumPy
Module_BridgeNumPy-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_HigherOrderAccurateGradient
Module_HigherOrderAccurateGradient-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_IOFDF
Module_IOFDF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_IOSTL
Module_IOSTL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_IOTransformDCMTK
Module_IOTransformDCMTK-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKAnisotropicSmoothing
Module_ITKAnisotropicSmoothing-ADVANCED:INTERNAL=1
//Request building ITKAnisotropicSmoothing
Module_ITKAnisotropicSmoothing:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKAntiAlias
Module_ITKAntiAlias-ADVANCED:INTERNAL=1
//Request building ITKAntiAlias
Module_ITKAntiAlias:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKBiasCorrection
Module_ITKBiasCorrection-ADVANCED:INTERNAL=1
//Request building ITKBiasCorrection
Module_ITKBiasCorrection:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKBinaryMathematicalMorphology
Module_ITKBinaryMathematicalMorphology-ADVANCED:INTERNAL=1
//Request building ITKBinaryMathematicalMorphology
Module_ITKBinaryMathematicalMorphology:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKBioCell
Module_ITKBioCell-ADVANCED:INTERNAL=1
//Request building ITKBioCell
Module_ITKBioCell:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKClassifiers
Module_ITKClassifiers-ADVANCED:INTERNAL=1
//Request building ITKClassifiers
Module_ITKClassifiers:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKColormap
Module_ITKColormap-ADVANCED:INTERNAL=1
//Request building ITKColormap
Module_ITKColormap:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKCommon
Module_ITKCommon-ADVANCED:INTERNAL=1
//Request building ITKCommon
Module_ITKCommon:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKConnectedComponents
Module_ITKConnectedComponents-ADVANCED:INTERNAL=1
//Request building ITKConnectedComponents
Module_ITKConnectedComponents:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKConvolution
Module_ITKConvolution-ADVANCED:INTERNAL=1
//Request building ITKConvolution
Module_ITKConvolution:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKCurvatureFlow
Module_ITKCurvatureFlow-ADVANCED:INTERNAL=1
//Request building ITKCurvatureFlow
Module_ITKCurvatureFlow:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDCMTK
Module_ITKDCMTK-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKDICOMParser
Module_ITKDICOMParser-ADVANCED:INTERNAL=1
//Request building ITKDICOMParser
Module_ITKDICOMParser:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDeconvolution
Module_ITKDeconvolution-ADVANCED:INTERNAL=1
//Request building ITKDeconvolution
Module_ITKDeconvolution:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDeformableMesh
Module_ITKDeformableMesh-ADVANCED:INTERNAL=1
//Request building ITKDeformableMesh
Module_ITKDeformableMesh:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDenoising
Module_ITKDenoising-ADVANCED:INTERNAL=1
//Request building ITKDenoising
Module_ITKDenoising:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDeprecated
Module_ITKDeprecated-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKDiffusionTensorImage
Module_ITKDiffusionTensorImage-ADVANCED:INTERNAL=1
//Request building ITKDiffusionTensorImage
Module_ITKDiffusionTensorImage:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDisplacementField
Module_ITKDisplacementField-ADVANCED:INTERNAL=1
//Request building ITKDisplacementField
Module_ITKDisplacementField:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDistanceMap
Module_ITKDistanceMap-ADVANCED:INTERNAL=1
//Request building ITKDistanceMap
Module_ITKDistanceMap:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDoubleConversion
Module_ITKDoubleConversion-ADVANCED:INTERNAL=1
//Request building ITKDoubleConversion
Module_ITKDoubleConversion:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKEigen
Module_ITKEigen-ADVANCED:INTERNAL=1
//Request building ITKEigen
Module_ITKEigen:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKExpat
Module_ITKExpat-ADVANCED:INTERNAL=1
//Request building ITKExpat
Module_ITKExpat:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKFEM
Module_ITKFEM-ADVANCED:INTERNAL=1
//Request building ITKFEM
Module_ITKFEM:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKFEMRegistration
Module_ITKFEMRegistration-ADVANCED:INTERNAL=1
//Request building ITKFEMRegistration
Module_ITKFEMRegistration:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKFFT
Module_ITKFFT-ADVANCED:INTERNAL=1
//Request building ITKFFT
Module_ITKFFT:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKFastMarching
Module_ITKFastMarching-ADVANCED:INTERNAL=1
//Request building ITKFastMarching
Module_ITKFastMarching:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKFiniteDifference
Module_ITKFiniteDifference-ADVANCED:INTERNAL=1
//Request building ITKFiniteDifference
Module_ITKFiniteDifference:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGDCM
Module_ITKGDCM-ADVANCED:INTERNAL=1
//Request building ITKGDCM
Module_ITKGDCM:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGIFTI
Module_ITKGIFTI-ADVANCED:INTERNAL=1
//Request building ITKGIFTI
Module_ITKGIFTI:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUAnisotropicSmoothing
Module_ITKGPUAnisotropicSmoothing-ADVANCED:INTERNAL=1
//Request building ITKGPUAnisotropicSmoothing
Module_ITKGPUAnisotropicSmoothing:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUCommon
Module_ITKGPUCommon-ADVANCED:INTERNAL=1
//Request building ITKGPUCommon
Module_ITKGPUCommon:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUFiniteDifference
Module_ITKGPUFiniteDifference-ADVANCED:INTERNAL=1
//Request building ITKGPUFiniteDifference
Module_ITKGPUFiniteDifference:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUImageFilterBase
Module_ITKGPUImageFilterBase-ADVANCED:INTERNAL=1
//Request building ITKGPUImageFilterBase
Module_ITKGPUImageFilterBase:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUPDEDeformableRegistration
Module_ITKGPUPDEDeformableRegistration-ADVANCED:INTERNAL=1
//Request building ITKGPUPDEDeformableRegistration
Module_ITKGPUPDEDeformableRegistration:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPURegistrationCommon
Module_ITKGPURegistrationCommon-ADVANCED:INTERNAL=1
//Request building ITKGPURegistrationCommon
Module_ITKGPURegistrationCommon:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUSmoothing
Module_ITKGPUSmoothing-ADVANCED:INTERNAL=1
//Request building ITKGPUSmoothing
Module_ITKGPUSmoothing:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUThresholding
Module_ITKGPUThresholding-ADVANCED:INTERNAL=1
//Request building ITKGPUThresholding
Module_ITKGPUThresholding:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKHDF5
Module_ITKHDF5-ADVANCED:INTERNAL=1
//Request building ITKHDF5
Module_ITKHDF5:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOBMP
Module_ITKIOBMP-ADVANCED:INTERNAL=1
//Request building ITKIOBMP
Module_ITKIOBMP:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOBioRad
Module_ITKIOBioRad-ADVANCED:INTERNAL=1
//Request building ITKIOBioRad
Module_ITKIOBioRad:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOCSV
Module_ITKIOCSV-ADVANCED:INTERNAL=1
//Request building ITKIOCSV
Module_ITKIOCSV:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIODCMTK
Module_ITKIODCMTK-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKIOGDCM
Module_ITKIOGDCM-ADVANCED:INTERNAL=1
//Request building ITKIOGDCM
Module_ITKIOGDCM:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOGE
Module_ITKIOGE-ADVANCED:INTERNAL=1
//Request building ITKIOGE
Module_ITKIOGE:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOGIPL
Module_ITKIOGIPL-ADVANCED:INTERNAL=1
//Request building ITKIOGIPL
Module_ITKIOGIPL:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOHDF5
Module_ITKIOHDF5-ADVANCED:INTERNAL=1
//Request building ITKIOHDF5
Module_ITKIOHDF5:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOIPL
Module_ITKIOIPL-ADVANCED:INTERNAL=1
//Request building ITKIOIPL
Module_ITKIOIPL:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOImageBase
Module_ITKIOImageBase-ADVANCED:INTERNAL=1
//Request building ITKIOImageBase
Module_ITKIOImageBase:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOJPEG
Module_ITKIOJPEG-ADVANCED:INTERNAL=1
//Request building ITKIOJPEG
Module_ITKIOJPEG:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOLSM
Module_ITKIOLSM-ADVANCED:INTERNAL=1
//Request building ITKIOLSM
Module_ITKIOLSM:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOMINC
Module_ITKIOMINC-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKIOMRC
Module_ITKIOMRC-ADVANCED:INTERNAL=1
//Request building ITKIOMRC
Module_ITKIOMRC:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOMesh
Module_ITKIOMesh-ADVANCED:INTERNAL=1
//Request building ITKIOMesh
Module_ITKIOMesh:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOMeta
Module_ITKIOMeta-ADVANCED:INTERNAL=1
//Request building ITKIOMeta
Module_ITKIOMeta:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIONIFTI
Module_ITKIONIFTI-ADVANCED:INTERNAL=1
//Request building ITKIONIFTI
Module_ITKIONIFTI:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIONRRD
Module_ITKIONRRD-ADVANCED:INTERNAL=1
//Request building ITKIONRRD
Module_ITKIONRRD:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOPNG
Module_ITKIOPNG-ADVANCED:INTERNAL=1
//Request building ITKIOPNG
Module_ITKIOPNG:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOPhilipsREC
Module_ITKIOPhilipsREC-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKIORAW
Module_ITKIORAW-ADVANCED:INTERNAL=1
//Request building ITKIORAW
Module_ITKIORAW:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOSiemens
Module_ITKIOSiemens-ADVANCED:INTERNAL=1
//Request building ITKIOSiemens
Module_ITKIOSiemens:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOSpatialObjects
Module_ITKIOSpatialObjects-ADVANCED:INTERNAL=1
//Request building ITKIOSpatialObjects
Module_ITKIOSpatialObjects:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOStimulate
Module_ITKIOStimulate-ADVANCED:INTERNAL=1
//Request building ITKIOStimulate
Module_ITKIOStimulate:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOTIFF
Module_ITKIOTIFF-ADVANCED:INTERNAL=1
//Request building ITKIOTIFF
Module_ITKIOTIFF:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOTransformBase
Module_ITKIOTransformBase-ADVANCED:INTERNAL=1
//Request building ITKIOTransformBase
Module_ITKIOTransformBase:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOTransformHDF5
Module_ITKIOTransformHDF5-ADVANCED:INTERNAL=1
//Request building ITKIOTransformHDF5
Module_ITKIOTransformHDF5:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOTransformInsightLegacy
Module_ITKIOTransformInsightLegacy-ADVANCED:INTERNAL=1
//Request building ITKIOTransformInsightLegacy
Module_ITKIOTransformInsightLegacy:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOTransformMatlab
Module_ITKIOTransformMatlab-ADVANCED:INTERNAL=1
//Request building ITKIOTransformMatlab
Module_ITKIOTransformMatlab:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOVTK
Module_ITKIOVTK-ADVANCED:INTERNAL=1
//Request building ITKIOVTK
Module_ITKIOVTK:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOXML
Module_ITKIOXML-ADVANCED:INTERNAL=1
//Request building ITKIOXML
Module_ITKIOXML:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageAdaptors
Module_ITKImageAdaptors-ADVANCED:INTERNAL=1
//Request building ITKImageAdaptors
Module_ITKImageAdaptors:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageCompare
Module_ITKImageCompare-ADVANCED:INTERNAL=1
//Request building ITKImageCompare
Module_ITKImageCompare:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageCompose
Module_ITKImageCompose-ADVANCED:INTERNAL=1
//Request building ITKImageCompose
Module_ITKImageCompose:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageFeature
Module_ITKImageFeature-ADVANCED:INTERNAL=1
//Request building ITKImageFeature
Module_ITKImageFeature:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageFilterBase
Module_ITKImageFilterBase-ADVANCED:INTERNAL=1
//Request building ITKImageFilterBase
Module_ITKImageFilterBase:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageFunction
Module_ITKImageFunction-ADVANCED:INTERNAL=1
//Request building ITKImageFunction
Module_ITKImageFunction:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageFusion
Module_ITKImageFusion-ADVANCED:INTERNAL=1
//Request building ITKImageFusion
Module_ITKImageFusion:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageGradient
Module_ITKImageGradient-ADVANCED:INTERNAL=1
//Request building ITKImageGradient
Module_ITKImageGradient:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageGrid
Module_ITKImageGrid-ADVANCED:INTERNAL=1
//Request building ITKImageGrid
Module_ITKImageGrid:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageIntensity
Module_ITKImageIntensity-ADVANCED:INTERNAL=1
//Request building ITKImageIntensity
Module_ITKImageIntensity:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageLabel
Module_ITKImageLabel-ADVANCED:INTERNAL=1
//Request building ITKImageLabel
Module_ITKImageLabel:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageNoise
Module_ITKImageNoise-ADVANCED:INTERNAL=1
//Request building ITKImageNoise
Module_ITKImageNoise:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageSources
Module_ITKImageSources-ADVANCED:INTERNAL=1
//Request building ITKImageSources
Module_ITKImageSources:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageStatistics
Module_ITKImageStatistics-ADVANCED:INTERNAL=1
//Request building ITKImageStatistics
Module_ITKImageStatistics:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIntegratedTest
Module_ITKIntegratedTest-ADVANCED:INTERNAL=1
//Request building ITKIntegratedTest
Module_ITKIntegratedTest:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKJPEG
Module_ITKJPEG-ADVANCED:INTERNAL=1
//Request building ITKJPEG
Module_ITKJPEG:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKKLMRegionGrowing
Module_ITKKLMRegionGrowing-ADVANCED:INTERNAL=1
//Request building ITKKLMRegionGrowing
Module_ITKKLMRegionGrowing:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKKWSys
Module_ITKKWSys-ADVANCED:INTERNAL=1
//Request building ITKKWSys
Module_ITKKWSys:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKLabelMap
Module_ITKLabelMap-ADVANCED:INTERNAL=1
//Request building ITKLabelMap
Module_ITKLabelMap:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKLabelVoting
Module_ITKLabelVoting-ADVANCED:INTERNAL=1
//Request building ITKLabelVoting
Module_ITKLabelVoting:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKLevelSets
Module_ITKLevelSets-ADVANCED:INTERNAL=1
//Request building ITKLevelSets
Module_ITKLevelSets:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKLevelSetsv4
Module_ITKLevelSetsv4-ADVANCED:INTERNAL=1
//Request building ITKLevelSetsv4
Module_ITKLevelSetsv4:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKLevelSetsv4Visualization
Module_ITKLevelSetsv4Visualization-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKMINC
Module_ITKMINC-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKMarkovRandomFieldsClassifiers
Module_ITKMarkovRandomFieldsClassifiers-ADVANCED:INTERNAL=1
//Request building ITKMarkovRandomFieldsClassifiers
Module_ITKMarkovRandomFieldsClassifiers:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKMathematicalMorphology
Module_ITKMathematicalMorphology-ADVANCED:INTERNAL=1
//Request building ITKMathematicalMorphology
Module_ITKMathematicalMorphology:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKMesh
Module_ITKMesh-ADVANCED:INTERNAL=1
//Request building ITKMesh
Module_ITKMesh:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKMetaIO
Module_ITKMetaIO-ADVANCED:INTERNAL=1
//Request building ITKMetaIO
Module_ITKMetaIO:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKMetricsv4
Module_ITKMetricsv4-ADVANCED:INTERNAL=1
//Request building ITKMetricsv4
Module_ITKMetricsv4:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKNIFTI
Module_ITKNIFTI-ADVANCED:INTERNAL=1
//Request building ITKNIFTI
Module_ITKNIFTI:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKNarrowBand
Module_ITKNarrowBand-ADVANCED:INTERNAL=1
//Request building ITKNarrowBand
Module_ITKNarrowBand:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKNetlib
Module_ITKNetlib-ADVANCED:INTERNAL=1
//Request building ITKNetlib
Module_ITKNetlib:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKNeuralNetworks
Module_ITKNeuralNetworks-ADVANCED:INTERNAL=1
//Request building ITKNeuralNetworks
Module_ITKNeuralNetworks:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKNrrdIO
Module_ITKNrrdIO-ADVANCED:INTERNAL=1
//Request building ITKNrrdIO
Module_ITKNrrdIO:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKOpenJPEG
Module_ITKOpenJPEG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKOptimizers
Module_ITKOptimizers-ADVANCED:INTERNAL=1
//Request building ITKOptimizers
Module_ITKOptimizers:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKOptimizersv4
Module_ITKOptimizersv4-ADVANCED:INTERNAL=1
//Request building ITKOptimizersv4
Module_ITKOptimizersv4:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKPDEDeformableRegistration
Module_ITKPDEDeformableRegistration-ADVANCED:INTERNAL=1
//Request building ITKPDEDeformableRegistration
Module_ITKPDEDeformableRegistration:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKPNG
Module_ITKPNG-ADVANCED:INTERNAL=1
//Request building ITKPNG
Module_ITKPNG:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKPath
Module_ITKPath-ADVANCED:INTERNAL=1
//Request building ITKPath
Module_ITKPath:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKPolynomials
Module_ITKPolynomials-ADVANCED:INTERNAL=1
//Request building ITKPolynomials
Module_ITKPolynomials:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKQuadEdgeMesh
Module_ITKQuadEdgeMesh-ADVANCED:INTERNAL=1
//Request building ITKQuadEdgeMesh
Module_ITKQuadEdgeMesh:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKQuadEdgeMeshFiltering
Module_ITKQuadEdgeMeshFiltering-ADVANCED:INTERNAL=1
//Request building ITKQuadEdgeMeshFiltering
Module_ITKQuadEdgeMeshFiltering:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKRegionGrowing
Module_ITKRegionGrowing-ADVANCED:INTERNAL=1
//Request building ITKRegionGrowing
Module_ITKRegionGrowing:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKRegistrationCommon
Module_ITKRegistrationCommon-ADVANCED:INTERNAL=1
//Request building ITKRegistrationCommon
Module_ITKRegistrationCommon:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKRegistrationMethodsv4
Module_ITKRegistrationMethodsv4-ADVANCED:INTERNAL=1
//Request building ITKRegistrationMethodsv4
Module_ITKRegistrationMethodsv4:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKReview
Module_ITKReview-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKSignedDistanceFunction
Module_ITKSignedDistanceFunction-ADVANCED:INTERNAL=1
//Request building ITKSignedDistanceFunction
Module_ITKSignedDistanceFunction:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKSmoothing
Module_ITKSmoothing-ADVANCED:INTERNAL=1
//Request building ITKSmoothing
Module_ITKSmoothing:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKSpatialFunction
Module_ITKSpatialFunction-ADVANCED:INTERNAL=1
//Request building ITKSpatialFunction
Module_ITKSpatialFunction:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKSpatialObjects
Module_ITKSpatialObjects-ADVANCED:INTERNAL=1
//Request building ITKSpatialObjects
Module_ITKSpatialObjects:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKStatistics
Module_ITKStatistics-ADVANCED:INTERNAL=1
//Request building ITKStatistics
Module_ITKStatistics:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKTIFF
Module_ITKTIFF-ADVANCED:INTERNAL=1
//Request building ITKTIFF
Module_ITKTIFF:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKTestKernel
Module_ITKTestKernel-ADVANCED:INTERNAL=1
//Request building ITKTestKernel
Module_ITKTestKernel:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKThresholding
Module_ITKThresholding-ADVANCED:INTERNAL=1
//Request building ITKThresholding
Module_ITKThresholding:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKTransform
Module_ITKTransform-ADVANCED:INTERNAL=1
//Request building ITKTransform
Module_ITKTransform:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKV3Compatibility
Module_ITKV3Compatibility-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKVNL
Module_ITKVNL-ADVANCED:INTERNAL=1
//Request building ITKVNL
Module_ITKVNL:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVNLInstantiation
Module_ITKVNLInstantiation-ADVANCED:INTERNAL=1
//Request building ITKVNLInstantiation
Module_ITKVNLInstantiation:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVTK
Module_ITKVTK-ADVANCED:INTERNAL=1
//Request building ITKVTK
Module_ITKVTK:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVideoBridgeOpenCV
Module_ITKVideoBridgeOpenCV-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKVideoBridgeVXL
Module_ITKVideoBridgeVXL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKVideoCore
Module_ITKVideoCore-ADVANCED:INTERNAL=1
//Request building ITKVideoCore
Module_ITKVideoCore:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVideoFiltering
Module_ITKVideoFiltering-ADVANCED:INTERNAL=1
//Request building ITKVideoFiltering
Module_ITKVideoFiltering:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVideoIO
Module_ITKVideoIO-ADVANCED:INTERNAL=1
//Request building ITKVideoIO
Module_ITKVideoIO:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVoronoi
Module_ITKVoronoi-ADVANCED:INTERNAL=1
//Request building ITKVoronoi
Module_ITKVoronoi:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVtkGlue
Module_ITKVtkGlue-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKWatersheds
Module_ITKWatersheds-ADVANCED:INTERNAL=1
//Request building ITKWatersheds
Module_ITKWatersheds:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKZLIB
Module_ITKZLIB-ADVANCED:INTERNAL=1
//Request building ITKZLIB
Module_ITKZLIB:INTERNAL=OFF
//ADVANCED property for variable: Module_LabelErodeDilate
Module_LabelErodeDilate-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_LesionSizingToolkit
Module_LesionSizingToolkit-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_MGHIO
Module_MGHIO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_MinimalPathExtraction
Module_MinimalPathExtraction-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ParabolicMorphology
Module_ParabolicMorphology-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SCIFIO
Module_SCIFIO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SkullStrip
Module_SkullStrip-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SmoothingRecursiveYvvGaussianFilter
Module_SmoothingRecursiveYvvGaussianFilter-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SphinxExamples
Module_SphinxExamples-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SplitComponents
Module_SplitComponents-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SubdivisionQuadEdgeMeshFilter
Module_SubdivisionQuadEdgeMeshFilter-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_VariationalRegistration
Module_VariationalRegistration-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_WikiExamples
Module_WikiExamples-ADVANCED:INTERNAL=1
//Have library c
NOT_NEED_LIBNSL:INTERNAL=
OPENJPEG_INSTALL_PACKAGE_DIR:INTERNAL=lib/gdcmopenjpeg-2.0
//ADVANCED property for variable: P4COMMAND
P4COMMAND-ADVANCED:INTERNAL=1
//ADVANCED property for variable: PERL_EXECUTABLE
PERL_EXECUTABLE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: PYTHON_EXECUTABLE
PYTHON_EXECUTABLE-ADVANCED:INTERNAL=1
//The 22nd bit of 32-bit floating-point quiet NaN.
QNANHIBIT:INTERNAL=1
//Result of TRY_RUN
QNANHIBIT_VALUE:INTERNAL=1
//ADVANCED property for variable: SCPCOMMAND
SCPCOMMAND-ADVANCED:INTERNAL=1
//ADVANCED property for variable: SITE
SITE-ADVANCED:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int)
SIZEOF_INT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(long)
SIZEOF_LONG:INTERNAL=4
//ADVANCED property for variable: SLURM_SBATCH_COMMAND
SLURM_SBATCH_COMMAND-ADVANCED:INTERNAL=1
//ADVANCED property for variable: SLURM_SRUN_COMMAND
SLURM_SRUN_COMMAND-ADVANCED:INTERNAL=1
//Have function strsignal
SOCKETXX_HAVE_STRSIGNAL:INTERNAL=
//ADVANCED property for variable: SVNCOMMAND
SVNCOMMAND-ADVANCED:INTERNAL=1
//VXL test 
VCL_ALLOWS_INLINE_INSTANTIATION:INTERNAL=1
//VXL test 
VCL_ALLOWS_NAMESPACE_STD:INTERNAL=1
//VXL test 
VCL_CANNOT_SPECIALIZE_CV:INTERNAL=1
//VXL test 
VCL_CAN_DO_COMPLETE_DEFAULT_TYPE_PARAMETER:INTERNAL=1
//VXL test 
VCL_CAN_DO_IMPLICIT_TEMPLATES:INTERNAL=1
//VXL test 
VCL_CAN_DO_NON_TYPE_FUNCTION_TEMPLATE_PARAMETER:INTERNAL=1
//VXL test 
VCL_CAN_DO_PARTIAL_SPECIALIZATION:INTERNAL=1
//VXL test 
VCL_CAN_DO_STATIC_TEMPLATE_MEMBER:INTERNAL=1
//VXL test 
VCL_CAN_DO_TEMPLATE_DEFAULT_TYPE_PARAMETER:INTERNAL=1
//VXL test  (successful run)
VCL_CHAR_IS_SIGNED:INTERNAL=1
//Result of TRY_COMPILE
VCL_CHAR_IS_SIGNED_COMPILED:INTERNAL=TRUE
//VXL test  (successful run)
VCL_COMPLEX_POW_WORKS:INTERNAL=1
//Result of TRY_COMPILE
VCL_COMPLEX_POW_WORKS_COMPILED:INTERNAL=TRUE
//Have include algorithm
VCL_CXX_HAS_HEADER_ALGORITHM:INTERNAL=1
//Have include bitset
VCL_CXX_HAS_HEADER_BITSET:INTERNAL=1
//Have include cassert
VCL_CXX_HAS_HEADER_CASSERT:INTERNAL=1
//Have include cctype
VCL_CXX_HAS_HEADER_CCTYPE:INTERNAL=1
//Have include cerrno
VCL_CXX_HAS_HEADER_CERRNO:INTERNAL=1
//Have include cfloat
VCL_CXX_HAS_HEADER_CFLOAT:INTERNAL=1
//Have include ciso646
VCL_CXX_HAS_HEADER_CISO646:INTERNAL=1
//Have include climits
VCL_CXX_HAS_HEADER_CLIMITS:INTERNAL=1
//Have include clocale
VCL_CXX_HAS_HEADER_CLOCALE:INTERNAL=1
//Have include cmath
VCL_CXX_HAS_HEADER_CMATH:INTERNAL=1
//Have include complex
VCL_CXX_HAS_HEADER_COMPLEX:INTERNAL=1
//Have include csetjmp
VCL_CXX_HAS_HEADER_CSETJMP:INTERNAL=1
//Have include csignal
VCL_CXX_HAS_HEADER_CSIGNAL:INTERNAL=1
//Have include cstdarg
VCL_CXX_HAS_HEADER_CSTDARG:INTERNAL=1
//Have include cstddef
VCL_CXX_HAS_HEADER_CSTDDEF:INTERNAL=1
//Have include cstdio
VCL_CXX_HAS_HEADER_CSTDIO:INTERNAL=1
//Have include cstdlib
VCL_CXX_HAS_HEADER_CSTDLIB:INTERNAL=1
//Have include cstring
VCL_CXX_HAS_HEADER_CSTRING:INTERNAL=1
//Have include ctime
VCL_CXX_HAS_HEADER_CTIME:INTERNAL=1
//Have include cwchar
VCL_CXX_HAS_HEADER_CWCHAR:INTERNAL=1
//Have include cwctype
VCL_CXX_HAS_HEADER_CWCTYPE:INTERNAL=1
//Have include deque
VCL_CXX_HAS_HEADER_DEQUE:INTERNAL=1
//Have include exception
VCL_CXX_HAS_HEADER_EXCEPTION:INTERNAL=1
//Have include fstream
VCL_CXX_HAS_HEADER_FSTREAM:INTERNAL=1
//Have include functional
VCL_CXX_HAS_HEADER_FUNCTIONAL:INTERNAL=1
//Have include iomanip
VCL_CXX_HAS_HEADER_IOMANIP:INTERNAL=1
//Have include ios
VCL_CXX_HAS_HEADER_IOS:INTERNAL=1
//Have include iosfwd
VCL_CXX_HAS_HEADER_IOSFWD:INTERNAL=1
//Have include iostream
VCL_CXX_HAS_HEADER_IOSTREAM:INTERNAL=1
//Have include iso646.h
VCL_CXX_HAS_HEADER_ISO646_H:INTERNAL=1
//Have include istream
VCL_CXX_HAS_HEADER_ISTREAM:INTERNAL=1
//Have include iterator
VCL_CXX_HAS_HEADER_ITERATOR:INTERNAL=1
//Have include limits
VCL_CXX_HAS_HEADER_LIMITS:INTERNAL=1
//Have include list
VCL_CXX_HAS_HEADER_LIST:INTERNAL=1
//Have include locale
VCL_CXX_HAS_HEADER_LOCALE:INTERNAL=1
//Have include map
VCL_CXX_HAS_HEADER_MAP:INTERNAL=1
//Have include memory
VCL_CXX_HAS_HEADER_MEMORY:INTERNAL=1
//Have include new
VCL_CXX_HAS_HEADER_NEW:INTERNAL=1
//Have include numeric
VCL_CXX_HAS_HEADER_NUMERIC:INTERNAL=1
//Have include ostream
VCL_CXX_HAS_HEADER_OSTREAM:INTERNAL=1
//Have include queue
VCL_CXX_HAS_HEADER_QUEUE:INTERNAL=1
//Have include set
VCL_CXX_HAS_HEADER_SET:INTERNAL=1
//Have include sstream
VCL_CXX_HAS_HEADER_SSTREAM:INTERNAL=1
//Have include stack
VCL_CXX_HAS_HEADER_STACK:INTERNAL=1
//Have include stdexcept
VCL_CXX_HAS_HEADER_STDEXCEPT:INTERNAL=1
//Have include streambuf
VCL_CXX_HAS_HEADER_STREAMBUF:INTERNAL=1
//Have include string
VCL_CXX_HAS_HEADER_STRING:INTERNAL=1
//Have include strstream
VCL_CXX_HAS_HEADER_STRSTREAM:INTERNAL=1
//Have include typeinfo
VCL_CXX_HAS_HEADER_TYPEINFO:INTERNAL=1
//Have include utility
VCL_CXX_HAS_HEADER_UTILITY:INTERNAL=1
//Have include valarray
VCL_CXX_HAS_HEADER_VALARRAY:INTERNAL=1
//Have include vector
VCL_CXX_HAS_HEADER_VECTOR:INTERNAL=1
//Have include tr1/memory
VCL_CXX_HAS_TR1:INTERNAL=
//VXL test 
VCL_DEFAULT_VALUE:INTERNAL=1
//VXL test 
VCL_DEFINE_SPECIALIZATION:INTERNAL=1
//VXL test 
VCL_FOR_SCOPE_HACK:INTERNAL=1
//VXL test 
VCL_HAS_BOOL:INTERNAL=1
//VXL test 
VCL_HAS_DYNAMIC_CAST:INTERNAL=1
//VXL test 
VCL_HAS_EXCEPTIONS:INTERNAL=1
//VXL test 
VCL_HAS_EXPLICIT:INTERNAL=1
//Test 
VCL_HAS_EXPORT:INTERNAL=0
//VXL test  (successful run)
VCL_HAS_LFS:INTERNAL=1
//Result of TRY_COMPILE
VCL_HAS_LFS_COMPILED:INTERNAL=TRUE
//VXL test 
VCL_HAS_LONG_LONG:INTERNAL=1
//VXL test 
VCL_HAS_MEMBER_TEMPLATES:INTERNAL=1
//VXL test 
VCL_HAS_MUTABLE:INTERNAL=1
//Test 
VCL_HAS_NAMESPACES:INTERNAL=0
//VXL test 
VCL_HAS_RTTI:INTERNAL=1
//VXL test  (successful run)
VCL_HAS_SLICED_DESTRUCTOR_BUG:INTERNAL=1
//Result of TRY_COMPILE
VCL_HAS_SLICED_DESTRUCTOR_BUG_COMPILED:INTERNAL=TRUE
//Test  (failed to compile)
VCL_HAS_TEMPLATE_SYMBOLS:INTERNAL=0
//Result of TRY_COMPILE
VCL_HAS_TEMPLATE_SYMBOLS_COMPILED:INTERNAL=FALSE
//VXL test 
VCL_HAS_TYPENAME:INTERNAL=1
//VXL test  (successful run)
VCL_HAS_WORKING_STRINGSTREAM:INTERNAL=1
//Result of TRY_COMPILE
VCL_HAS_WORKING_STRINGSTREAM_COMPILED:INTERNAL=TRUE
//ADVANCED property for variable: VCL_INCLUDE_CXX_0X
VCL_INCLUDE_CXX_0X-ADVANCED:INTERNAL=1
//Have symbol std::shared_ptr<void>
VCL_MEMORY_HAS_SHARED_PTR:INTERNAL=1
//VXL test 
VCL_NEEDS_INLINE_INSTANTIATION:INTERNAL=1
//Test 
VCL_NEEDS_NAMESPACE_STD:INTERNAL=0
//VXL test 
VCL_NEED_FRIEND_FOR_TEMPLATE_OVERLOAD:INTERNAL=1
//VXL test 
VCL_NO_STATIC_DATA_MEMBERS:INTERNAL=1
//Test 
VCL_NULL_TMPL_ARGS:INTERNAL=0
//VXL test  (successful run)
VCL_NUMERIC_LIMITS_HAS_INFINITY:INTERNAL=1
//Result of TRY_COMPILE
VCL_NUMERIC_LIMITS_HAS_INFINITY_COMPILED:INTERNAL=TRUE
//VXL test 
VCL_OVERLOAD_CAST:INTERNAL=1
//VXL test  (successful run)
VCL_PROCESSOR_HAS_INFINITY:INTERNAL=1
//Result of TRY_COMPILE
VCL_PROCESSOR_HAS_INFINITY_COMPILED:INTERNAL=TRUE
//Test 
VCL_STATIC_CONST_INIT_FLOAT:INTERNAL=0
//VXL test 
VCL_STATIC_CONST_INIT_INT:INTERNAL=1
//VXL test 
VCL_STATIC_CONST_INIT_NO_DEFN:INTERNAL=1
//VXL test 
VCL_SUNPRO_CLASS_SCOPE_HACK:INTERNAL=1
//VXL test 
VCL_TEMPLATE_MATCHES_TOO_OFTEN:INTERNAL=1
//Have symbol std::tr1::shared_ptr<void>
VCL_TR1_MEMORY_HAS_SHARED_PTR:INTERNAL=
//ADVANCED property for variable: VNL_CONFIG_CHECK_BOUNDS
VNL_CONFIG_CHECK_BOUNDS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: VNL_CONFIG_ENABLE_SSE2
VNL_CONFIG_ENABLE_SSE2-ADVANCED:INTERNAL=1
//ADVANCED property for variable: VNL_CONFIG_ENABLE_SSE2_ROUNDING
VNL_CONFIG_ENABLE_SSE2_ROUNDING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: VNL_CONFIG_LEGACY_METHODS
VNL_CONFIG_LEGACY_METHODS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: VNL_CONFIG_THREAD_SAFE
VNL_CONFIG_THREAD_SAFE-ADVANCED:INTERNAL=1
//Result of TEST_BIG_ENDIAN
VXL_BIG_ENDIAN:INTERNAL=0
//VXL test result
VXL_BYTE:INTERNAL=char
//Serial number of last configuration
VXL_CONFIG_SERIAL_LAST:INTERNAL=2009-04-28-001
//Have symbol finite
VXL_C_MATH_HAS_FINITE:INTERNAL=
//Have symbol finitef
VXL_C_MATH_HAS_FINITEF:INTERNAL=
//Have symbol finitel
VXL_C_MATH_HAS_FINITEL:INTERNAL=
//VXL test 
VXL_C_MATH_HAS_LROUND:INTERNAL=1
//Have symbol sqrtf
VXL_C_MATH_HAS_SQRTF:INTERNAL=1
//VXL test 
VXL_HAS_ALIGNED_MALLOC:INTERNAL=1
//VXL test result
VXL_HAS_BYTE:INTERNAL=1
//VXL test 
VXL_HAS_DBGHELP_H:INTERNAL=1
//Have include emmintrin.h
VXL_HAS_EMMINTRIN_H:INTERNAL=1
//Have include ieeefp.h
VXL_HAS_IEEEFP_H:INTERNAL=
//VXL test result
VXL_HAS_IEEE_128:INTERNAL=0
//VXL test result
VXL_HAS_IEEE_32:INTERNAL=1
//VXL test result
VXL_HAS_IEEE_64:INTERNAL=1
//VXL test result
VXL_HAS_IEEE_96:INTERNAL=0
//VXL test result
VXL_HAS_INT_16:INTERNAL=1
//VXL test result
VXL_HAS_INT_32:INTERNAL=1
//VXL test result
VXL_HAS_INT_64:INTERNAL=1
//VXL test result
VXL_HAS_INT_8:INTERNAL=1
//Test 
VXL_HAS_MINGW_ALIGNED_MALLOC:INTERNAL=0
//VXL test 
VXL_HAS_MM_MALLOC:INTERNAL=1
//Test 
VXL_HAS_POSIX_MEMALIGN:INTERNAL=0
//Have include pthread.h
VXL_HAS_PTHREAD_H:INTERNAL=
//Have include semaphore.h
VXL_HAS_SEMAPHORE_H:INTERNAL=
//VXL test  (successful run)
VXL_HAS_SSE2_HARDWARE_SUPPORT:INTERNAL=1
//Result of TRY_COMPILE
VXL_HAS_SSE2_HARDWARE_SUPPORT_COMPILED:INTERNAL=TRUE
//VXL test 
VXL_HAS_WIN_WCHAR_T:INTERNAL=1
//Have symbol finite
VXL_IEEEFP_HAS_FINITE:INTERNAL=
//VXL test result
VXL_IEEE_128:INTERNAL=void
//VXL test result
VXL_IEEE_32:INTERNAL=float
//VXL test result
VXL_IEEE_64:INTERNAL=double
//VXL test result
VXL_IEEE_96:INTERNAL=void
//VXL test result
VXL_INT_16:INTERNAL=short
//VXL test result
VXL_INT_32:INTERNAL=int
//VXL test result
VXL_INT_64:INTERNAL=long long
//VXL test result
VXL_INT_8:INTERNAL=char
//VXL test 
VXL_PIC_COMPATIBLE:INTERNAL=1
//Have symbol drand48
VXL_STDLIB_HAS_DRAND48:INTERNAL=
//Have symbol lrand48
VXL_STDLIB_HAS_LRAND48:INTERNAL=
//VXL test 
VXL_STDLIB_HAS_QSORT:INTERNAL=1
//Have symbol srand48
VXL_STDLIB_HAS_SRAND48:INTERNAL=
//Test 
VXL_UNISTD_USLEEP_IS_VOID:INTERNAL=0
//ADVANCED property for variable: VXL_UPDATE_CONFIGURATION
VXL_UPDATE_CONFIGURATION-ADVANCED:INTERNAL=1
//Result of TEST_BIG_ENDIAN
WORDS_BIGENDIAN:INTERNAL=0
//Result of TRY_COMPILE
_using_libcxx:INTERNAL=FALSE


From ribaluigi at gmail.com  Wed Nov 18 05:53:54 2015
From: ribaluigi at gmail.com (Luigi Riba)
Date: Wed, 18 Nov 2015 11:53:54 +0100
Subject: [ITK] registration - memory concerns
In-Reply-To: <CAJaJUhNCy1knRBRVx2rkpSjYVDw4W_s+ax8osxArRAWtrvkxsQ@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
 <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
 <CAJaJUhNMdRhM4JUvbk2RnbJSbn2CQm2c1q+B+S8VqVNzPh6-qw@mail.gmail.com>
 <CAKKNfuKdPXKPKK2ovrY9pywnJ87DV9Puy+HEHNBoBMTP8ybTGw@mail.gmail.com>
 <CAJaJUhOKpLnmvr-RiO75-k42VmGoRXm5dyX_KsRpADRRPdr3Rw@mail.gmail.com>
 <CAPf2UMRVnvOJrcE0w0Q+ngM2N=JCg1bcZJ65Mxz-g2P-BR5DSA@mail.gmail.com>
 <CAKKNfuLunxE4SPyj9dqhZc_ihX80v_NkH9sixZph-7pgQmWR_A@mail.gmail.com>
 <CAJaJUhNCy1knRBRVx2rkpSjYVDw4W_s+ax8osxArRAWtrvkxsQ@mail.gmail.com>
Message-ID: <CAJaJUhNVs_GzOEfG7HCo_tH5AJbbWB4SDqWEHPMiEtsfbfLXjQ@mail.gmail.com>

Dear all,

I have tried your suggestions and I have simplified my code. Unfortunately,
I still have some issues:

1. I cannot read the two images as unsigned short. If I do like this,
VisualStudio compiler returns:
 Error 2 error C2440: 'initializing' : cannot convert from
'itk::Concept::Detail::UniqueType_bool<false>' to
'itk::Concept::Detail::UniqueType_bool<true>'
f:\libs\itk\modules\core\common\include\itkConceptChecking.h 796 1 affine3d

2. I have decided to read the images directly in float;

3. I have set everything to float but I have noticed *no* memory usage
differences between the "dobule" and "float" code. In particular, I have
set:

> typedef float InternalComputationValueType;
> typedef itk::AffineTransform< InternalComputationValueType, Dimension>
> TransformType;
> typedef
> itk::RegularStepGradientDescentOptimizerv4<InternalComputationValueType>
> OptimizerType;
> typedef itk::MeanSquaresImageToImageMetricv4<ImageType, ImageType,
> ImageType, InternalComputationValueType>  MetricType;
> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
> TransformType> RegistrationType;
> typedef float CoordinateType;
> typedef itk::LinearInterpolateImageFunction<ImageType, CoordinateType>
> InterpolationType;


RECAP:
1. I would like to reduce the memory usage of my registration code. In
fact, I work with unsigned short, i.e. 16 bit grayscale images, ~1Gb each
and memory usage gets high pretty soon (750MB images -> ~30GB total memory
usage)
2. It has been suggested to set the algorithm to work with float instead of
double;
3. How can I accomplish point 2.?
4. Is point 2. the only viable solution in order to reduce memory usage?
5  Is there a way to have a finer monitoring of memory usage. For the
moment I am using itkMemoryProbe which just gives me the total amount of
used memory.

Thank you for your kind support,
Luigi


2015-11-16 16:55 GMT+01:00 Luigi Riba <ribaluigi at gmail.com>:

> Dear D?enan and Matias,
>
> thank you very much for the help.
>
> I'll test your suggestion and I'll post back the results for the community.
>
> Best,
>
> Luigi
>
> 2015-11-16 16:53 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
>
>> That was my assumption Luigi
>>
>> El lun., 16 de nov. de 2015 a la(s) 12:30 p. m., D?enan Zuki? <
>> dzenanz at gmail.com> escribi?:
>>
>>> I believe Matias thought that your original pixel type was signed short.
>>>
>>> So just use the images you read as unsigned short (set them as input to
>>> the registration), and don't make another copy of the images by casting
>>> them to float.
>>>
>>> HTH
>>>
>>> On Mon, Nov 16, 2015 at 10:17 AM, Luigi Riba <ribaluigi at gmail.com>
>>> wrote:
>>>
>>>> Dear Matias,
>>>>
>>>> thank you very much for your quick reply.
>>>>
>>>> Unfortunately, I didn't have time yet to test it. Anyhow, could you
>>>> please tell me the rationale behind it?
>>>>
>>>> In my code:
>>>>
>>>>
>>>>    1. I read two grayscale 16 bit .mhd images. To read them I define
>>>>    the IOPixelTyep as unsigned short;
>>>>    2. I cast them to the "operational" type called PixelType as float
>>>>    3. I define all the registration objects templated on float.
>>>>
>>>> Why should I cast my images to PixelType == signed short?
>>>>
>>>> Thanks in advance for the support,
>>>> Luigi
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> 2015-11-10 15:45 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
>>>>
>>>>> try this:
>>>>> typedef  signed short  PixelType;
>>>>>
>>>>>
>>>>> El mar., 10 de nov. de 2015 a la(s) 11:36 a. m., Luigi Riba <
>>>>> ribaluigi at gmail.com> escribi?:
>>>>>
>>>>>> Dear Matt,
>>>>>>
>>>>>> I have tried following your suggestion but, unfortunately, it didn't
>>>>>> work out.
>>>>>>
>>>>>> In particular:
>>>>>>
>>>>>>    1. I read a pair of uint16 images;
>>>>>>    2. I cast them to float pixel type via the CastImageFilter;
>>>>>>    3. I change the TInternalComputationValueType for the metric, the
>>>>>>    optimizer, the transform and the registration doing something like:
>>>>>>
>>>>>> const unsigned int Dimension = 3;
>>>>>>
>>>>>> typedef float PixelType;
>>>>>>
>>>>>> typedef unsigned short IOPixelType;
>>>>>>>
>>>>>> typedef itk::Image<IOPixelType, Dimension> IOImageType;
>>>>>>
>>>>>> typedef itk::Image<PixelType, Dimension> ImageType;
>>>>>>
>>>>>> typedef itk::AffineTransform<float, Dimension > TransformType;
>>>>>>
>>>>>> typedef itk::RegularStepGradientDescentOptimizerv4<float>
>>>>>>> OptimizerType;
>>>>>>
>>>>>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType,
>>>>>>> ImageType,ImageType,float> MetricType;
>>>>>>
>>>>>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>>>>>>> TransformType> RegistrationType;
>>>>>>
>>>>>> typedef itk::ResampleImageFilter<IOImageType, IOImageType,
>>>>>>> float,float> ResampleFilterType;
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> I have put one memory probe before the registration procedure and one
>>>>>> afterwards of it. In the "double" case and in the "float" case I've seen
>>>>>> the same memory consumption.
>>>>>>
>>>>>> Am I missing something? Are there other things I should change in my
>>>>>> code?
>>>>>>
>>>>>> Thanks again for the support,
>>>>>> Luigi
>>>>>>
>>>>>>
>>>>>>
>>>>>> 2015-11-09 17:23 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com
>>>>>> >:
>>>>>>
>>>>>>> Hi Luigi,
>>>>>>>
>>>>>>> The type of optimizer should not have too large of an impact on
>>>>>>> memory
>>>>>>> consumption.  Using a gradient-free optimizer may help slightly, but
>>>>>>> try changing the pixel type of the input images or, if possible, the
>>>>>>> parameter type of the transformation, from double to float.
>>>>>>>
>>>>>>> HTH,
>>>>>>> Matt
>>>>>>>
>>>>>>> On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <ribaluigi at gmail.com>
>>>>>>> wrote:
>>>>>>> > Dear all,
>>>>>>> >
>>>>>>> > I am registering a couple of volumes with ITK 4 on windows 7 64
>>>>>>> bit.
>>>>>>> >
>>>>>>> > I wrote a code based on the affine transformation, with the mean
>>>>>>> square
>>>>>>> > error metric and the RegularStepGradientDescentOptimizerv4.
>>>>>>> Unfortunately,
>>>>>>> > the memory usage is pretty high.
>>>>>>> >
>>>>>>> > I have checked memory consumption with the itkMemoryProbe and,
>>>>>>> after looking
>>>>>>> > around on previous mailing list messages I have decided to try
>>>>>>> with a
>>>>>>> > gradient free optimizer like the Nelder-Mead one.
>>>>>>> >
>>>>>>> > So I have rewrote the code using the AmoebaOptimizerV4 and I have
>>>>>>> continued
>>>>>>> > monitoring the memory consumption via MemoryProbe. Unfortunately,
>>>>>>> it seems
>>>>>>> > that nothing has changed. Is this working as expected? If this is
>>>>>>> the case,
>>>>>>> > do you have any suggestion to gave me in order to reduce the memory
>>>>>>> > consumption of the code?
>>>>>>> >
>>>>>>> > Thanks in advance for the help.
>>>>>>> >
>>>>>>> > Best,
>>>>>>> >
>>>>>>> > Luigi
>>>>>>> >
>>>>>>> > _______________________________________________
>>>>>>> > Community mailing list
>>>>>>> > Community at itk.org
>>>>>>> > http://public.kitware.com/mailman/listinfo/community
>>>>>>> >
>>>>>>>
>>>>>> _______________________________________________
>>>>>> Community mailing list
>>>>>> Community at itk.org
>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>
>>>>> --
>>>>> Matias
>>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> Community mailing list
>>>> Community at itk.org
>>>> http://public.kitware.com/mailman/listinfo/community
>>>>
>>>>
>>> --
>> Matias
>>
>
>
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From karrach.houssam at gmail.com  Wed Nov 18 07:42:48 2015
From: karrach.houssam at gmail.com (Houssam Karrach)
Date: Wed, 18 Nov 2015 13:42:48 +0100
Subject: [ITK] Activiz .Net and SimpleITK
In-Reply-To: <CAM=a2R0Oq2x-i5qUJxr=oOn=fEf1bk7gzmphX0REqLDqrLBHDg@mail.gmail.com>
References: <CAM=a2R09-XpDoF5XxbqMgS9z5n2tTMT823PM1SdWj6=5P6n4jQ@mail.gmail.com>
 <CAM=a2R0Oq2x-i5qUJxr=oOn=fEf1bk7gzmphX0REqLDqrLBHDg@mail.gmail.com>
Message-ID: <CAM=a2R0-yvfjbS_-C7ZqBWBypPM=0Bw_Gz-Pj9p9JJ_5JHEzvw@mail.gmail.com>

Hello,

My goal is to integrate Activiz and SimpleITK into the same application.

I didn't find any of the glue classes.

Thanks.


2015-11-18 11:39 GMT+01:00 Houssam Karrach <karrach.houssam at gmail.com>:

> Dear Aashish,
>
> My goal is to integrate Activiz and SimpleITK into the same application.
>
> I didn't find any of the glue classes.
>
> Thanks.
>
>
>
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From seun at rogue-research.com  Wed Nov 18 08:52:22 2015
From: seun at rogue-research.com (Seun Odutola)
Date: Wed, 18 Nov 2015 08:52:22 -0500
Subject: [ITK] [ITK-dev] Missing ITK Minc2 header
Message-ID: <0D985148-B123-4B5E-A272-87E2EE407D45@rogue-research.com>

Hello All,
 
     I am currently facing an issue, on installing ITK 4 (via cmake), I get a compile error as a result of a missing header (itk_minc2.h). It seems to that cmake doesn?t copy over the itk_minc2.h to the installation folder. For instance in the file (itkMINCImageIO.h) on installing I get this error 

#ifndef itkMINCImageIO_h
#define itkMINCImageIO_h

#include "itkImageIOBase.h"

#include "itkMatrix.h"

#include <itk_minc2.h>	// ?> this line flags an error (itk_minc2.h file not found)

#include "ITKIOMINCExport.h"

please note that other included headers in this file seem to be fine except that in the comment above. I would like to know if this is a bug on it?s part & if so how does one get around this. 
Thanks

Regards,
   Seun
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From dzenanz at gmail.com  Wed Nov 18 09:45:03 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 18 Nov 2015 09:45:03 -0500
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAMeM8ybeAARUD13gbwHv-NK17K2SpXNmJ2xYH-6_WbjVVaD3Jg@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
 <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
 <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
 <CAPf2UMSN=ff2_pjKepVyd2V3coi_Fw33YwbSosPH+Fyv6hXPJg@mail.gmail.com>
 <CAMeM8ybeAARUD13gbwHv-NK17K2SpXNmJ2xYH-6_WbjVVaD3Jg@mail.gmail.com>
Message-ID: <CAPf2UMQ6uAwmqzDNkHiGS7znisbZbFrZY-6cC9L+CU2cjBFZDw@mail.gmail.com>

Since static libraries are built by default, ~/ITK_bin/bin/Debug/ contains
only 3 exe files on my machine (and no DLLs). However ~/ITK_bin/lib/Debug/
should contain a bunch of .lib files. If it is so, you have successfully
built ITK in debug mode.

Regarding that patch, you should not have to apply it, it should be
included. What is the latest commit in the commit log of ITK? Mine is this:

Revision: d248d5f52ad66b19346cab3e8336715a3a628980
Author: Hyun Jae Kang <hyunjae.kang at kitware.com>
Date: 2015-11-17 08:24:57
Message:
Merge topic 'warning-itkResourceProbe'


3d3b908f COMP: Fix data-conversion warning message on itkResourceProbe
----
Modified: Modules/Core/Common/include/itkResourceProbe.h
Modified: Modules/Core/Common/include/itkResourceProbe.hxx
Modified: CMakeLists.txt


On Wed, Nov 18, 2015 at 2:30 AM, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
wrote:

> Thank you, I have made the new selection to VS 14 2015 Win64 generator in
> CMake.
>
> However, the patch that solved the error messages is:
>
> http://review.source.kitware.com/#/c/20272/
>
> and NOT:
>
> http://review.source.kitware.com/#/c/20154/1
>
> I have now no errors during CMake configuration/generation step. The VS 14
> 2015 build is successful with 335 succeeded, 0 failed, 0 updated.
>
> BUT the ~/ITK_bin/bin/Debug/  does not contain the expected
> directories/files. By expected I mean the ones specified in the
> ITK_Tutorial:
>
> ITKCommon
> ITKBasicFilters
> ITKAlgorithms
> ITKNumerics
> ITKFEM
> ITKIO
> ITKStatistics
> ITKMetalIO
> itkpng
> itkzlib
>
> I have attached the CMakeCache.txt and the selection in the configuration
> stage in CMake.
>
> Many thanks in advance.
>
>
> On 18 November 2015 at 04:40, D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> What I meant is that the choice of generator should include Win64 in its
>> name, as shown in the attached screenshot. CMake executable is Win32, that
>> does not matter. Also, I just built ITK in 32 bit mode without issues, so
>> something else is amiss.
>>
>> Can you attach your CMakeCache.txt?
>>
>> On Tue, Nov 17, 2015 at 8:12 PM, T?nde Szil?gyi <
>> a.tunde.szilagyi at gmail.com> wrote:
>>
>>> I have tried without the patch, but I am receiving the same error
>>> message. My generator is VS 14 2015 (see CMake window on the LHS).
>>>
>>> Now, I have cleaned everything and started with a fresh installation:
>>> - Git Bash
>>> - CMake
>>> - ITK master
>>>
>>> I realized that only Win32 CMake exists on the official website:
>>> https://cmake.org/download/
>>>
>>> Is this what you refer to in your e-mail below? What else would you
>>> recommend?
>>>
>>> Many thanks.
>>>
>>>
>>> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> That patch was merged to master, so you don't need to apply it.
>>>>
>>>> I used VS2015 *Win64* as the generator. You seem to be using *Win32*,
>>>> that might make a difference.
>>>>
>>>> I used version 3.3.1, which I installed some time ago. You are using
>>>> release candidate version - I doubt that is the reason.
>>>>
>>>> Can you try a clean clone (git clone git://itk.org/ITK.git), and then
>>>> building into a clean directory?
>>>>
>>>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>
>>>>> During CMake I am getting the attached error message. All the error
>>>>> messages I receive is with reference to exe files starting with
>>>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>>>> this (http://review.source.kitware.com/#/c/20154/1 - Checkout), but
>>>>> this still results in the same error messages as before. I have attached
>>>>> one of the error messages that appear during CMake project configuration.
>>>>>
>>>>> Many thanks.
>>>>>
>>>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>
>>>>>> Master branch from git://itk.org/ITK.git
>>>>>>
>>>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>
>>>>>>> Which ITK version did you use?
>>>>>>>
>>>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> This configuration compiles fine in debug too.
>>>>>>>>
>>>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> Hi T?nde,
>>>>>>>>>
>>>>>>>>> checking out *master* branch and CMake configuration went fine.
>>>>>>>>> To speed up compile time, I disabled building of examples and testing. I
>>>>>>>>> also enabled ITK_LEGACY_REMOVE. I did not enable Module_ITKVtkGlue.
>>>>>>>>>
>>>>>>>>> Opening the solution file in VS2015 was fairly slow - it might
>>>>>>>>> have something to do with the fact I just installed it. Building in Release
>>>>>>>>> x64 finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>>>
>>>>>>>>> Regards,
>>>>>>>>> D?enan
>>>>>>>>>
>>>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>
>>>>>>>>>> Hi Everyone,
>>>>>>>>>>
>>>>>>>>>> I would be interested whether anyone has managed to build the ITK
>>>>>>>>>> Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>>>
>>>>>>>>>> Many thanks.
>>>>>>>>>> Tunde
>>>>>>>>>>
>>>>>>>>>> _______________________________________________
>>>>>>>>>> Community mailing list
>>>>>>>>>> Community at itk.org
>>>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> --
>>>>>>> Tunde
>>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> --
>>>>> Tunde
>>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> --
>>> Tunde
>>>
>>
>>
>
>
> --
> --
> Tunde
>
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From osubachev at gmail.com  Wed Nov 18 09:51:40 2015
From: osubachev at gmail.com (Oleg Subachev)
Date: Wed, 18 Nov 2015 19:51:40 +0500
Subject: [ITK] How to get to get image similarity metrics under .NET ?
In-Reply-To: <D885E0B0-F39F-4076-986E-A48115E8BD21@mail.nih.gov>
References: <CAD0V+a2fhGDFbCg8wHC9+NZi8rda278_nhc2ETkTAXQZEQ5JXw@mail.gmail.com>
 <D885E0B0-F39F-4076-986E-A48115E8BD21@mail.nih.gov>
Message-ID: <CAD0V+a0hWFRsvctcV0TPbBPaAZzQvhJhYyhr-+2w6OTMdvctEQ@mail.gmail.com>

Thanks, Brad.

But when I try this code:
using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
{
method.SetMetricAsMattesMutualInformation( 50 );
double metric = method.MetricEvaluate( SimpleITK.ReadImage( "1.png" ),
SimpleITK.ReadImage( "2.png" ) );
}

I get the exception:
{"Exception thrown in SimpleITK
ImageRegistrationMethod_MetricEvaluate:
..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegistrationMethod.cxx:862:\nsitk::ERROR:
Filter does not support fixed image type: vector of 8-bit unsigned
integer"}

What's wrong ?
What is the simplest way to get similarity value of two image files ?

-- 
Best regards,
Oleg Subachev

On Tue, Nov 17, 2015 at 6:41 PM, Bradley Lowekamp
<blowekamp at mail.nih.gov> wrote:
> Hello,
>
> You should look into SimpleITK's ImageRegistrationMethod::MetricEvaluate( Image, Image ) member function.
>
> Here is a Python example of using the method, C# should be similar:
>
> http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/63_Registration_Initialization.html
>
> HTH,
> Brad
>
> On Nov 17, 2015, at 8:24 AM, Oleg Subachev <osubachev at gmail.com> wrote:
>
>> I need to get similarity metrics for 2D images under .NET.
>> According to ITK documentation
>> (http://www.itk.org/Doxygen/html/ImageSimilarityMetricsPage.html)
>> there are several Image To Image metrics available.
>> ITK itself contains corresponding methods.
>> But I cannot find those methods in SimpleITK :-(
>> There is SimpleITK.NormalizedCorrelation(Image, Image, Image) method,
>> but it seems to have nothing with similarity metrics.
>>
>> How to get to get image similarity metrics under .NET ?
>>
>> --
>> Best regards,
>>
>> Oleg Subachev
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>

From zivrafael.yaniv at nih.gov  Wed Nov 18 10:14:56 2015
From: zivrafael.yaniv at nih.gov (Yaniv, Ziv Rafael (NIH/NLM/LHC) [C])
Date: Wed, 18 Nov 2015 15:14:56 +0000
Subject: [ITK] How to get to get image similarity metrics under .NET ?
In-Reply-To: <CAD0V+a0hWFRsvctcV0TPbBPaAZzQvhJhYyhr-+2w6OTMdvctEQ@mail.gmail.com>
References: <CAD0V+a2fhGDFbCg8wHC9+NZi8rda278_nhc2ETkTAXQZEQ5JXw@mail.gmail.com>
 <D885E0B0-F39F-4076-986E-A48115E8BD21@mail.nih.gov>
 <CAD0V+a0hWFRsvctcV0TPbBPaAZzQvhJhYyhr-+2w6OTMdvctEQ@mail.gmail.com>
Message-ID: <D271FDCB.66B3%yanivz@mail.nih.gov>

Hello Oleg,

The ImageRegistrationMethod only supports images with pixel type
sitkFloat32 and sitkFloat64. You can either specify the pixel type when
reading the image 
(http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#a02ff
c30c3c55dd9eeff3f76ba19f35e7) or read the image with its native pixel type
and then 
use the SimpleITK Cast function
(http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#af8c9
d7cc96a299a05890e9c3db911885), casting it to either of these two types.

   Ziv



On 11/18/15, 9:51 AM, "Oleg Subachev" <osubachev at gmail.com> wrote:

>Thanks, Brad.
>
>But when I try this code:
>using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
>{
>method.SetMetricAsMattesMutualInformation( 50 );
>double metric = method.MetricEvaluate( SimpleITK.ReadImage( "1.png" ),
>SimpleITK.ReadImage( "2.png" ) );
>}
>
>I get the exception:
>{"Exception thrown in SimpleITK
>ImageRegistrationMethod_MetricEvaluate:
>..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegistrat
>ionMethod.cxx:862:\nsitk::ERROR:
>Filter does not support fixed image type: vector of 8-bit unsigned
>integer"}
>
>What's wrong ?
>What is the simplest way to get similarity value of two image files ?
>
>-- 
>Best regards,
>Oleg Subachev
>
>On Tue, Nov 17, 2015 at 6:41 PM, Bradley Lowekamp
><blowekamp at mail.nih.gov> wrote:
>> Hello,
>>
>> You should look into SimpleITK's
>>ImageRegistrationMethod::MetricEvaluate( Image, Image ) member function.
>>
>> Here is a Python example of using the method, C# should be similar:
>>
>> 
>>http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/63_Registr
>>ation_Initialization.html
>>
>> HTH,
>> Brad
>>
>> On Nov 17, 2015, at 8:24 AM, Oleg Subachev <osubachev at gmail.com> wrote:
>>
>>> I need to get similarity metrics for 2D images under .NET.
>>> According to ITK documentation
>>> (http://www.itk.org/Doxygen/html/ImageSimilarityMetricsPage.html)
>>> there are several Image To Image metrics available.
>>> ITK itself contains corresponding methods.
>>> But I cannot find those methods in SimpleITK :-(
>>> There is SimpleITK.NormalizedCorrelation(Image, Image, Image) method,
>>> but it seems to have nothing with similarity metrics.
>>>
>>> How to get to get image similarity metrics under .NET ?
>>>
>>> --
>>> Best regards,
>>>
>>> Oleg Subachev
>>> _______________________________________________
>>> Community mailing list
>>> Community at itk.org
>>> http://public.kitware.com/mailman/listinfo/community
>>
>_______________________________________________
>Community mailing list
>Community at itk.org
>http://public.kitware.com/mailman/listinfo/community


From dzenanz at gmail.com  Wed Nov 18 10:27:31 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 18 Nov 2015 10:27:31 -0500
Subject: [ITK] How to get to get image similarity metrics under .NET ?
In-Reply-To: <CAD0V+a0hWFRsvctcV0TPbBPaAZzQvhJhYyhr-+2w6OTMdvctEQ@mail.gmail.com>
References: <CAD0V+a2fhGDFbCg8wHC9+NZi8rda278_nhc2ETkTAXQZEQ5JXw@mail.gmail.com>
 <D885E0B0-F39F-4076-986E-A48115E8BD21@mail.nih.gov>
 <CAD0V+a0hWFRsvctcV0TPbBPaAZzQvhJhYyhr-+2w6OTMdvctEQ@mail.gmail.com>
Message-ID: <CAPf2UMRu+yrg1xvWO9hgo12N1O3SjADnCTZKUJ=-TGgSkjAHbA@mail.gmail.com>

Hi Oleg,

you seem to be reading RGB images. Can you convert them to grayscale and
try again?

Regards,
D?enan

On Wed, Nov 18, 2015 at 9:51 AM, Oleg Subachev <osubachev at gmail.com> wrote:

> Thanks, Brad.
>
> But when I try this code:
> using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
> {
> method.SetMetricAsMattesMutualInformation( 50 );
> double metric = method.MetricEvaluate( SimpleITK.ReadImage( "1.png" ),
> SimpleITK.ReadImage( "2.png" ) );
> }
>
> I get the exception:
> {"Exception thrown in SimpleITK
> ImageRegistrationMethod_MetricEvaluate:
>
> ..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegistrationMethod.cxx:862:\nsitk::ERROR:
> Filter does not support fixed image type: vector of 8-bit unsigned
> integer"}
>
> What's wrong ?
> What is the simplest way to get similarity value of two image files ?
>
> --
> Best regards,
> Oleg Subachev
>
> On Tue, Nov 17, 2015 at 6:41 PM, Bradley Lowekamp
> <blowekamp at mail.nih.gov> wrote:
> > Hello,
> >
> > You should look into SimpleITK's
> ImageRegistrationMethod::MetricEvaluate( Image, Image ) member function.
> >
> > Here is a Python example of using the method, C# should be similar:
> >
> >
> http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/63_Registration_Initialization.html
> >
> > HTH,
> > Brad
> >
> > On Nov 17, 2015, at 8:24 AM, Oleg Subachev <osubachev at gmail.com> wrote:
> >
> >> I need to get similarity metrics for 2D images under .NET.
> >> According to ITK documentation
> >> (http://www.itk.org/Doxygen/html/ImageSimilarityMetricsPage.html)
> >> there are several Image To Image metrics available.
> >> ITK itself contains corresponding methods.
> >> But I cannot find those methods in SimpleITK :-(
> >> There is SimpleITK.NormalizedCorrelation(Image, Image, Image) method,
> >> but it seems to have nothing with similarity metrics.
> >>
> >> How to get to get image similarity metrics under .NET ?
> >>
> >> --
> >> Best regards,
> >>
> >> Oleg Subachev
> >> _______________________________________________
> >> Community mailing list
> >> Community at itk.org
> >> http://public.kitware.com/mailman/listinfo/community
> >
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
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From dzenanz at gmail.com  Wed Nov 18 13:15:49 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 18 Nov 2015 13:15:49 -0500
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAMeM8yax+Z1bsjdw=ic6VHhvkfD4W5cwvBAppyBqmkixuj9xdg@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
 <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
 <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
 <CAPf2UMSN=ff2_pjKepVyd2V3coi_Fw33YwbSosPH+Fyv6hXPJg@mail.gmail.com>
 <CAMeM8ybeAARUD13gbwHv-NK17K2SpXNmJ2xYH-6_WbjVVaD3Jg@mail.gmail.com>
 <CAPf2UMQ6uAwmqzDNkHiGS7znisbZbFrZY-6cC9L+CU2cjBFZDw@mail.gmail.com>
 <CAMeM8yax+Z1bsjdw=ic6VHhvkfD4W5cwvBAppyBqmkixuj9xdg@mail.gmail.com>
Message-ID: <CAPf2UMSL4ho2p6RzFY52VMqKLsH0Ub6XSR7LFML0ekQ94ZJ+gg@mail.gmail.com>

ITK is largely a template library, which means it does not have a lot of
DLLs. Including headers is mostly sufficient. Also, ~/ITK_bin/*lib*/Debug/
should contain library files, *NOT* ~/ITK_bin/*bin*/Debug/.

It looks like you have successfully built ITK. Now you can configure
projects which require ITK by pointing them (setting ITK_DIR variable) to
*~/ITK_bin/*.

The simplest possible CMake configuration file for a program using ITK is
attached. You just need to provide C++ code (tester.cpp). It could be one
of the Wiki examples <http://itk.org/Wiki/ITK/Examples>. Then configure it
with CMake, and build it using the same generator as ITK (VS2015 x64).

HTH

On Wed, Nov 18, 2015 at 12:25 PM, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com
> wrote:

> Hi D?enan,
>
> Many thanks - there was a different patch that needed to be applied. See
> the description in the attached document. I summarize things below.
>
> System: Windows 10 64bit OS
>
> In summary:
> - re-installed Git [master] + patch that solved the errors
> - re-installed CMake
> - Configured and Generated Project in CMake (NO errors)
> - BUILD-ALL in VS 14 2015 (NO error message)
>
> Result:
> - the .../ITK_bin/bin/Debug does not contain the expected folders/files:
> ITKCommon, ITKBasicFilters, ITKAlgorithms, ITKNumerics, ITKFEM, ITKIO,
> ITKStatistics, ITKMetalIO, itkpng, itkzlib.
> - there is no Release folder in .../ITK_bin/bin/
>
> Each and every step is detailed and illustrated in the attached documents:
>
> 1. ITK_TOOLKIT_compilation_18112015.pdf (The end of this file contains a
> snapshot of the folders mentioned by You above.)
> 2. CMakeCache.txt
> 3. VS 14 2015 output: VS_14_2015_OUTPUT_18112015.pdf
>
> I would welcome your insights. Many thanks in advance.
>
> --
> Tunde
>
> On 18 November 2015 at 15:45, D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> Since static libraries are built by default, ~/ITK_bin/bin/Debug/
>> contains only 3 exe files on my machine (and no DLLs).
>> However ~/ITK_bin/lib/Debug/ should contain a bunch of .lib files. If it is
>> so, you have successfully built ITK in debug mode.
>>
>> Regarding that patch, you should not have to apply it, it should be
>> included. What is the latest commit in the commit log of ITK? Mine is this:
>>
>> Revision: d248d5f52ad66b19346cab3e8336715a3a628980
>> Author: Hyun Jae Kang <hyunjae.kang at kitware.com>
>> Date: 2015-11-17 08:24:57
>> Message:
>> Merge topic 'warning-itkResourceProbe'
>>
>>
>> 3d3b908f COMP: Fix data-conversion warning message on itkResourceProbe
>> ----
>> Modified: Modules/Core/Common/include/itkResourceProbe.h
>> Modified: Modules/Core/Common/include/itkResourceProbe.hxx
>> Modified: CMakeLists.txt
>>
>>
>> On Wed, Nov 18, 2015 at 2:30 AM, T?nde Szil?gyi <
>> a.tunde.szilagyi at gmail.com> wrote:
>>
>>> Thank you, I have made the new selection to VS 14 2015 Win64 generator
>>> in CMake.
>>>
>>> However, the patch that solved the error messages is:
>>>
>>> http://review.source.kitware.com/#/c/20272/
>>>
>>> and NOT:
>>>
>>> http://review.source.kitware.com/#/c/20154/1
>>>
>>> I have now no errors during CMake configuration/generation step. The VS
>>> 14 2015 build is successful with 335 succeeded, 0 failed, 0 updated.
>>>
>>> BUT the ~/ITK_bin/bin/Debug/  does not contain the expected
>>> directories/files. By expected I mean the ones specified in the
>>> ITK_Tutorial:
>>>
>>> ITKCommon
>>> ITKBasicFilters
>>> ITKAlgorithms
>>> ITKNumerics
>>> ITKFEM
>>> ITKIO
>>> ITKStatistics
>>> ITKMetalIO
>>> itkpng
>>> itkzlib
>>>
>>> I have attached the CMakeCache.txt and the selection in the
>>> configuration stage in CMake.
>>>
>>> Many thanks in advance.
>>>
>>>
>>> On 18 November 2015 at 04:40, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> What I meant is that the choice of generator should include Win64 in
>>>> its name, as shown in the attached screenshot. CMake executable is Win32,
>>>> that does not matter. Also, I just built ITK in 32 bit mode without issues,
>>>> so something else is amiss.
>>>>
>>>> Can you attach your CMakeCache.txt?
>>>>
>>>> On Tue, Nov 17, 2015 at 8:12 PM, T?nde Szil?gyi <
>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>
>>>>> I have tried without the patch, but I am receiving the same error
>>>>> message. My generator is VS 14 2015 (see CMake window on the LHS).
>>>>>
>>>>> Now, I have cleaned everything and started with a fresh installation:
>>>>> - Git Bash
>>>>> - CMake
>>>>> - ITK master
>>>>>
>>>>> I realized that only Win32 CMake exists on the official website:
>>>>> https://cmake.org/download/
>>>>>
>>>>> Is this what you refer to in your e-mail below? What else would you
>>>>> recommend?
>>>>>
>>>>> Many thanks.
>>>>>
>>>>>
>>>>> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>
>>>>>> That patch was merged to master, so you don't need to apply it.
>>>>>>
>>>>>> I used VS2015 *Win64* as the generator. You seem to be using *Win32*,
>>>>>> that might make a difference.
>>>>>>
>>>>>> I used version 3.3.1, which I installed some time ago. You are using
>>>>>> release candidate version - I doubt that is the reason.
>>>>>>
>>>>>> Can you try a clean clone (git clone git://itk.org/ITK.git), and
>>>>>> then building into a clean directory?
>>>>>>
>>>>>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>
>>>>>>> During CMake I am getting the attached error message. All the error
>>>>>>> messages I receive is with reference to exe files starting with
>>>>>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>>>>>> this (http://review.source.kitware.com/#/c/20154/1 - Checkout), but
>>>>>>> this still results in the same error messages as before. I have attached
>>>>>>> one of the error messages that appear during CMake project configuration.
>>>>>>>
>>>>>>> Many thanks.
>>>>>>>
>>>>>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> Master branch from git://itk.org/ITK.git
>>>>>>>>
>>>>>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>
>>>>>>>>> Which ITK version did you use?
>>>>>>>>>
>>>>>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>>> This configuration compiles fine in debug too.
>>>>>>>>>>
>>>>>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>>> wrote:
>>>>>>>>>>
>>>>>>>>>>> Hi T?nde,
>>>>>>>>>>>
>>>>>>>>>>> checking out *master* branch and CMake configuration went fine.
>>>>>>>>>>> To speed up compile time, I disabled building of examples and testing. I
>>>>>>>>>>> also enabled ITK_LEGACY_REMOVE. I did not enable Module_ITKVtkGlue.
>>>>>>>>>>>
>>>>>>>>>>> Opening the solution file in VS2015 was fairly slow - it might
>>>>>>>>>>> have something to do with the fact I just installed it. Building in Release
>>>>>>>>>>> x64 finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>>>>>
>>>>>>>>>>> Regards,
>>>>>>>>>>> D?enan
>>>>>>>>>>>
>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> Hi Everyone,
>>>>>>>>>>>>
>>>>>>>>>>>> I would be interested whether anyone has managed to build the
>>>>>>>>>>>> ITK Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>>>>>
>>>>>>>>>>>> Many thanks.
>>>>>>>>>>>> Tunde
>>>>>>>>>>>>
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> Community mailing list
>>>>>>>>>>>> Community at itk.org
>>>>>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> --
>>>>>>>>> Tunde
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> --
>>>>>>> Tunde
>>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> --
>>>>> Tunde
>>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> --
>>> Tunde
>>>
>>
>>
>
>
> --
> --
> Tunde
>
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cmake_minimum_required(VERSION 2.6)
PROJECT(tester CXX)
FIND_PACKAGE(ITK REQUIRED)
INCLUDE(${ITK_USE_FILE})
ADD_EXECUTABLE(tester tester.cpp)
TARGET_LINK_LIBRARIES(tester ${ITK_LIBRARIES})

From matimontg at gmail.com  Wed Nov 18 13:21:12 2015
From: matimontg at gmail.com (Matias Montroull)
Date: Wed, 18 Nov 2015 15:21:12 -0300
Subject: [ITK] registration - memory concerns
In-Reply-To: <CAJaJUhNVs_GzOEfG7HCo_tH5AJbbWB4SDqWEHPMiEtsfbfLXjQ@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
 <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
 <CAJaJUhNMdRhM4JUvbk2RnbJSbn2CQm2c1q+B+S8VqVNzPh6-qw@mail.gmail.com>
 <CAKKNfuKdPXKPKK2ovrY9pywnJ87DV9Puy+HEHNBoBMTP8ybTGw@mail.gmail.com>
 <CAJaJUhOKpLnmvr-RiO75-k42VmGoRXm5dyX_KsRpADRRPdr3Rw@mail.gmail.com>
 <CAPf2UMRVnvOJrcE0w0Q+ngM2N=JCg1bcZJ65Mxz-g2P-BR5DSA@mail.gmail.com>
 <CAKKNfuLunxE4SPyj9dqhZc_ihX80v_NkH9sixZph-7pgQmWR_A@mail.gmail.com>
 <CAJaJUhNCy1knRBRVx2rkpSjYVDw4W_s+ax8osxArRAWtrvkxsQ@mail.gmail.com>
 <CAJaJUhNVs_GzOEfG7HCo_tH5AJbbWB4SDqWEHPMiEtsfbfLXjQ@mail.gmail.com>
Message-ID: <CAKKNfuLy9ZeTuwKV21MAD49_16xfMKeDDP5Y=dQr=u0ndQ3iEw@mail.gmail.com>

Luigi, I assume you are workimg on release mode right?
Would you be able to send the cpp file that you are compiling to test?

Matias
On Nov 18, 2015 7:53 AM, "Luigi Riba" <ribaluigi at gmail.com> wrote:

> Dear all,
>
> I have tried your suggestions and I have simplified my code.
> Unfortunately, I still have some issues:
>
> 1. I cannot read the two images as unsigned short. If I do like this,
> VisualStudio compiler returns:
>  Error 2 error C2440: 'initializing' : cannot convert from
> 'itk::Concept::Detail::UniqueType_bool<false>' to
> 'itk::Concept::Detail::UniqueType_bool<true>'
> f:\libs\itk\modules\core\common\include\itkConceptChecking.h 796 1
> affine3d
>
> 2. I have decided to read the images directly in float;
>
> 3. I have set everything to float but I have noticed *no* memory usage
> differences between the "dobule" and "float" code. In particular, I have
> set:
>
>> typedef float InternalComputationValueType;
>> typedef itk::AffineTransform< InternalComputationValueType, Dimension>
>> TransformType;
>> typedef
>> itk::RegularStepGradientDescentOptimizerv4<InternalComputationValueType>
>> OptimizerType;
>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType, ImageType,
>> ImageType, InternalComputationValueType>  MetricType;
>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>> TransformType> RegistrationType;
>> typedef float CoordinateType;
>> typedef itk::LinearInterpolateImageFunction<ImageType, CoordinateType>
>> InterpolationType;
>
>
> RECAP:
> 1. I would like to reduce the memory usage of my registration code. In
> fact, I work with unsigned short, i.e. 16 bit grayscale images, ~1Gb each
> and memory usage gets high pretty soon (750MB images -> ~30GB total memory
> usage)
> 2. It has been suggested to set the algorithm to work with float instead
> of double;
> 3. How can I accomplish point 2.?
> 4. Is point 2. the only viable solution in order to reduce memory usage?
> 5  Is there a way to have a finer monitoring of memory usage. For the
> moment I am using itkMemoryProbe which just gives me the total amount of
> used memory.
>
> Thank you for your kind support,
> Luigi
>
>
> 2015-11-16 16:55 GMT+01:00 Luigi Riba <ribaluigi at gmail.com>:
>
>> Dear D?enan and Matias,
>>
>> thank you very much for the help.
>>
>> I'll test your suggestion and I'll post back the results for the
>> community.
>>
>> Best,
>>
>> Luigi
>>
>> 2015-11-16 16:53 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
>>
>>> That was my assumption Luigi
>>>
>>> El lun., 16 de nov. de 2015 a la(s) 12:30 p. m., D?enan Zuki? <
>>> dzenanz at gmail.com> escribi?:
>>>
>>>> I believe Matias thought that your original pixel type was signed short.
>>>>
>>>> So just use the images you read as unsigned short (set them as input to
>>>> the registration), and don't make another copy of the images by casting
>>>> them to float.
>>>>
>>>> HTH
>>>>
>>>> On Mon, Nov 16, 2015 at 10:17 AM, Luigi Riba <ribaluigi at gmail.com>
>>>> wrote:
>>>>
>>>>> Dear Matias,
>>>>>
>>>>> thank you very much for your quick reply.
>>>>>
>>>>> Unfortunately, I didn't have time yet to test it. Anyhow, could you
>>>>> please tell me the rationale behind it?
>>>>>
>>>>> In my code:
>>>>>
>>>>>
>>>>>    1. I read two grayscale 16 bit .mhd images. To read them I define
>>>>>    the IOPixelTyep as unsigned short;
>>>>>    2. I cast them to the "operational" type called PixelType as float
>>>>>    3. I define all the registration objects templated on float.
>>>>>
>>>>> Why should I cast my images to PixelType == signed short?
>>>>>
>>>>> Thanks in advance for the support,
>>>>> Luigi
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> 2015-11-10 15:45 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
>>>>>
>>>>>> try this:
>>>>>> typedef  signed short  PixelType;
>>>>>>
>>>>>>
>>>>>> El mar., 10 de nov. de 2015 a la(s) 11:36 a. m., Luigi Riba <
>>>>>> ribaluigi at gmail.com> escribi?:
>>>>>>
>>>>>>> Dear Matt,
>>>>>>>
>>>>>>> I have tried following your suggestion but, unfortunately, it didn't
>>>>>>> work out.
>>>>>>>
>>>>>>> In particular:
>>>>>>>
>>>>>>>    1. I read a pair of uint16 images;
>>>>>>>    2. I cast them to float pixel type via the CastImageFilter;
>>>>>>>    3. I change the TInternalComputationValueType for the metric,
>>>>>>>    the optimizer, the transform and the registration doing something like:
>>>>>>>
>>>>>>> const unsigned int Dimension = 3;
>>>>>>>
>>>>>>> typedef float PixelType;
>>>>>>>
>>>>>>> typedef unsigned short IOPixelType;
>>>>>>>>
>>>>>>> typedef itk::Image<IOPixelType, Dimension> IOImageType;
>>>>>>>
>>>>>>> typedef itk::Image<PixelType, Dimension> ImageType;
>>>>>>>
>>>>>>> typedef itk::AffineTransform<float, Dimension > TransformType;
>>>>>>>
>>>>>>> typedef itk::RegularStepGradientDescentOptimizerv4<float>
>>>>>>>> OptimizerType;
>>>>>>>
>>>>>>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType,
>>>>>>>> ImageType,ImageType,float> MetricType;
>>>>>>>
>>>>>>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>>>>>>>> TransformType> RegistrationType;
>>>>>>>
>>>>>>> typedef itk::ResampleImageFilter<IOImageType, IOImageType,
>>>>>>>> float,float> ResampleFilterType;
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> I have put one memory probe before the registration procedure and
>>>>>>> one afterwards of it. In the "double" case and in the "float" case I've
>>>>>>> seen the same memory consumption.
>>>>>>>
>>>>>>> Am I missing something? Are there other things I should change in my
>>>>>>> code?
>>>>>>>
>>>>>>> Thanks again for the support,
>>>>>>> Luigi
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> 2015-11-09 17:23 GMT+01:00 Matt McCormick <
>>>>>>> matt.mccormick at kitware.com>:
>>>>>>>
>>>>>>>> Hi Luigi,
>>>>>>>>
>>>>>>>> The type of optimizer should not have too large of an impact on
>>>>>>>> memory
>>>>>>>> consumption.  Using a gradient-free optimizer may help slightly, but
>>>>>>>> try changing the pixel type of the input images or, if possible, the
>>>>>>>> parameter type of the transformation, from double to float.
>>>>>>>>
>>>>>>>> HTH,
>>>>>>>> Matt
>>>>>>>>
>>>>>>>> On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <ribaluigi at gmail.com>
>>>>>>>> wrote:
>>>>>>>> > Dear all,
>>>>>>>> >
>>>>>>>> > I am registering a couple of volumes with ITK 4 on windows 7 64
>>>>>>>> bit.
>>>>>>>> >
>>>>>>>> > I wrote a code based on the affine transformation, with the mean
>>>>>>>> square
>>>>>>>> > error metric and the RegularStepGradientDescentOptimizerv4.
>>>>>>>> Unfortunately,
>>>>>>>> > the memory usage is pretty high.
>>>>>>>> >
>>>>>>>> > I have checked memory consumption with the itkMemoryProbe and,
>>>>>>>> after looking
>>>>>>>> > around on previous mailing list messages I have decided to try
>>>>>>>> with a
>>>>>>>> > gradient free optimizer like the Nelder-Mead one.
>>>>>>>> >
>>>>>>>> > So I have rewrote the code using the AmoebaOptimizerV4 and I have
>>>>>>>> continued
>>>>>>>> > monitoring the memory consumption via MemoryProbe. Unfortunately,
>>>>>>>> it seems
>>>>>>>> > that nothing has changed. Is this working as expected? If this is
>>>>>>>> the case,
>>>>>>>> > do you have any suggestion to gave me in order to reduce the
>>>>>>>> memory
>>>>>>>> > consumption of the code?
>>>>>>>> >
>>>>>>>> > Thanks in advance for the help.
>>>>>>>> >
>>>>>>>> > Best,
>>>>>>>> >
>>>>>>>> > Luigi
>>>>>>>> >
>>>>>>>> > _______________________________________________
>>>>>>>> > Community mailing list
>>>>>>>> > Community at itk.org
>>>>>>>> > http://public.kitware.com/mailman/listinfo/community
>>>>>>>> >
>>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Community mailing list
>>>>>>> Community at itk.org
>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>
>>>>>> --
>>>>>> Matias
>>>>>>
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> Community mailing list
>>>>> Community at itk.org
>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>
>>>>>
>>>> --
>>> Matias
>>>
>>
>>
>
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From a.tunde.szilagyi at gmail.com  Wed Nov 18 13:25:24 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Wed, 18 Nov 2015 19:25:24 +0100
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAPf2UMSL4ho2p6RzFY52VMqKLsH0Ub6XSR7LFML0ekQ94ZJ+gg@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
 <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
 <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
 <CAPf2UMSN=ff2_pjKepVyd2V3coi_Fw33YwbSosPH+Fyv6hXPJg@mail.gmail.com>
 <CAMeM8ybeAARUD13gbwHv-NK17K2SpXNmJ2xYH-6_WbjVVaD3Jg@mail.gmail.com>
 <CAPf2UMQ6uAwmqzDNkHiGS7znisbZbFrZY-6cC9L+CU2cjBFZDw@mail.gmail.com>
 <CAMeM8yax+Z1bsjdw=ic6VHhvkfD4W5cwvBAppyBqmkixuj9xdg@mail.gmail.com>
 <CAPf2UMSL4ho2p6RzFY52VMqKLsH0Ub6XSR7LFML0ekQ94ZJ+gg@mail.gmail.com>
Message-ID: <CAMeM8yZ7gNS=k-_jA9nrKEcjFN7g_8gJffghSvo59oXGko2SWQ@mail.gmail.com>

Many thanks!

On 18 November 2015 at 19:15, D?enan Zuki? <dzenanz at gmail.com> wrote:

> ITK is largely a template library, which means it does not have a lot of
> DLLs. Including headers is mostly sufficient. Also, ~/ITK_bin/*lib*/Debug/
> should contain library files, *NOT* ~/ITK_bin/*bin*/Debug/.
>
> It looks like you have successfully built ITK. Now you can configure
> projects which require ITK by pointing them (setting ITK_DIR variable) to
> *~/ITK_bin/*.
>
> The simplest possible CMake configuration file for a program using ITK is
> attached. You just need to provide C++ code (tester.cpp). It could be one
> of the Wiki examples <http://itk.org/Wiki/ITK/Examples>. Then configure
> it with CMake, and build it using the same generator as ITK (VS2015 x64).
>
> HTH
>
> On Wed, Nov 18, 2015 at 12:25 PM, T?nde Szil?gyi <
> a.tunde.szilagyi at gmail.com> wrote:
>
>> Hi D?enan,
>>
>> Many thanks - there was a different patch that needed to be applied. See
>> the description in the attached document. I summarize things below.
>>
>> System: Windows 10 64bit OS
>>
>> In summary:
>> - re-installed Git [master] + patch that solved the errors
>> - re-installed CMake
>> - Configured and Generated Project in CMake (NO errors)
>> - BUILD-ALL in VS 14 2015 (NO error message)
>>
>> Result:
>> - the .../ITK_bin/bin/Debug does not contain the expected folders/files:
>> ITKCommon, ITKBasicFilters, ITKAlgorithms, ITKNumerics, ITKFEM, ITKIO,
>> ITKStatistics, ITKMetalIO, itkpng, itkzlib.
>> - there is no Release folder in .../ITK_bin/bin/
>>
>> Each and every step is detailed and illustrated in the attached documents:
>>
>> 1. ITK_TOOLKIT_compilation_18112015.pdf (The end of this file contains a
>> snapshot of the folders mentioned by You above.)
>> 2. CMakeCache.txt
>> 3. VS 14 2015 output: VS_14_2015_OUTPUT_18112015.pdf
>>
>> I would welcome your insights. Many thanks in advance.
>>
>> --
>> Tunde
>>
>> On 18 November 2015 at 15:45, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> Since static libraries are built by default, ~/ITK_bin/bin/Debug/
>>> contains only 3 exe files on my machine (and no DLLs).
>>> However ~/ITK_bin/lib/Debug/ should contain a bunch of .lib files. If it is
>>> so, you have successfully built ITK in debug mode.
>>>
>>> Regarding that patch, you should not have to apply it, it should be
>>> included. What is the latest commit in the commit log of ITK? Mine is this:
>>>
>>> Revision: d248d5f52ad66b19346cab3e8336715a3a628980
>>> Author: Hyun Jae Kang <hyunjae.kang at kitware.com>
>>> Date: 2015-11-17 08:24:57
>>> Message:
>>> Merge topic 'warning-itkResourceProbe'
>>>
>>>
>>> 3d3b908f COMP: Fix data-conversion warning message on itkResourceProbe
>>> ----
>>> Modified: Modules/Core/Common/include/itkResourceProbe.h
>>> Modified: Modules/Core/Common/include/itkResourceProbe.hxx
>>> Modified: CMakeLists.txt
>>>
>>>
>>> On Wed, Nov 18, 2015 at 2:30 AM, T?nde Szil?gyi <
>>> a.tunde.szilagyi at gmail.com> wrote:
>>>
>>>> Thank you, I have made the new selection to VS 14 2015 Win64 generator
>>>> in CMake.
>>>>
>>>> However, the patch that solved the error messages is:
>>>>
>>>> http://review.source.kitware.com/#/c/20272/
>>>>
>>>> and NOT:
>>>>
>>>> http://review.source.kitware.com/#/c/20154/1
>>>>
>>>> I have now no errors during CMake configuration/generation step. The VS
>>>> 14 2015 build is successful with 335 succeeded, 0 failed, 0 updated.
>>>>
>>>> BUT the ~/ITK_bin/bin/Debug/  does not contain the expected
>>>> directories/files. By expected I mean the ones specified in the
>>>> ITK_Tutorial:
>>>>
>>>> ITKCommon
>>>> ITKBasicFilters
>>>> ITKAlgorithms
>>>> ITKNumerics
>>>> ITKFEM
>>>> ITKIO
>>>> ITKStatistics
>>>> ITKMetalIO
>>>> itkpng
>>>> itkzlib
>>>>
>>>> I have attached the CMakeCache.txt and the selection in the
>>>> configuration stage in CMake.
>>>>
>>>> Many thanks in advance.
>>>>
>>>>
>>>> On 18 November 2015 at 04:40, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>
>>>>> What I meant is that the choice of generator should include Win64 in
>>>>> its name, as shown in the attached screenshot. CMake executable is Win32,
>>>>> that does not matter. Also, I just built ITK in 32 bit mode without issues,
>>>>> so something else is amiss.
>>>>>
>>>>> Can you attach your CMakeCache.txt?
>>>>>
>>>>> On Tue, Nov 17, 2015 at 8:12 PM, T?nde Szil?gyi <
>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>
>>>>>> I have tried without the patch, but I am receiving the same error
>>>>>> message. My generator is VS 14 2015 (see CMake window on the LHS).
>>>>>>
>>>>>> Now, I have cleaned everything and started with a fresh installation:
>>>>>> - Git Bash
>>>>>> - CMake
>>>>>> - ITK master
>>>>>>
>>>>>> I realized that only Win32 CMake exists on the official website:
>>>>>> https://cmake.org/download/
>>>>>>
>>>>>> Is this what you refer to in your e-mail below? What else would you
>>>>>> recommend?
>>>>>>
>>>>>> Many thanks.
>>>>>>
>>>>>>
>>>>>> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>>
>>>>>>> That patch was merged to master, so you don't need to apply it.
>>>>>>>
>>>>>>> I used VS2015 *Win64* as the generator. You seem to be using *Win32*,
>>>>>>> that might make a difference.
>>>>>>>
>>>>>>> I used version 3.3.1, which I installed some time ago. You are using
>>>>>>> release candidate version - I doubt that is the reason.
>>>>>>>
>>>>>>> Can you try a clean clone (git clone git://itk.org/ITK.git), and
>>>>>>> then building into a clean directory?
>>>>>>>
>>>>>>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>
>>>>>>>> During CMake I am getting the attached error message. All the error
>>>>>>>> messages I receive is with reference to exe files starting with
>>>>>>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>>>>>>> this (http://review.source.kitware.com/#/c/20154/1 - Checkout),
>>>>>>>> but this still results in the same error messages as before. I have
>>>>>>>> attached one of the error messages that appear during CMake project
>>>>>>>> configuration.
>>>>>>>>
>>>>>>>> Many thanks.
>>>>>>>>
>>>>>>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> Master branch from git://itk.org/ITK.git
>>>>>>>>>
>>>>>>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>
>>>>>>>>>> Which ITK version did you use?
>>>>>>>>>>
>>>>>>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>>> wrote:
>>>>>>>>>>
>>>>>>>>>>> This configuration compiles fine in debug too.
>>>>>>>>>>>
>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <dzenanz at gmail.com
>>>>>>>>>>> > wrote:
>>>>>>>>>>>
>>>>>>>>>>>> Hi T?nde,
>>>>>>>>>>>>
>>>>>>>>>>>> checking out *master* branch and CMake configuration went
>>>>>>>>>>>> fine. To speed up compile time, I disabled building of examples and
>>>>>>>>>>>> testing. I also enabled ITK_LEGACY_REMOVE. I did not enable
>>>>>>>>>>>> Module_ITKVtkGlue.
>>>>>>>>>>>>
>>>>>>>>>>>> Opening the solution file in VS2015 was fairly slow - it might
>>>>>>>>>>>> have something to do with the fact I just installed it. Building in Release
>>>>>>>>>>>> x64 finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>>>>>>
>>>>>>>>>>>> Regards,
>>>>>>>>>>>> D?enan
>>>>>>>>>>>>
>>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> Hi Everyone,
>>>>>>>>>>>>>
>>>>>>>>>>>>> I would be interested whether anyone has managed to build the
>>>>>>>>>>>>> ITK Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>>>>>>
>>>>>>>>>>>>> Many thanks.
>>>>>>>>>>>>> Tunde
>>>>>>>>>>>>>
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> Community mailing list
>>>>>>>>>>>>> Community at itk.org
>>>>>>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> --
>>>>>>>>>> Tunde
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> --
>>>>>>>> Tunde
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> --
>>>>>> Tunde
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> --
>>>> Tunde
>>>>
>>>
>>>
>>
>>
>> --
>> --
>> Tunde
>>
>
>


-- 
--
Tunde
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From dzenanz at gmail.com  Wed Nov 18 14:24:25 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 18 Nov 2015 14:24:25 -0500
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAMeM8yZxdtbng1Rf8s5f8NW8eTsFcfYXeVcvb0XEsH8R8fEdPw@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
 <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
 <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
 <CAPf2UMSN=ff2_pjKepVyd2V3coi_Fw33YwbSosPH+Fyv6hXPJg@mail.gmail.com>
 <CAMeM8ybeAARUD13gbwHv-NK17K2SpXNmJ2xYH-6_WbjVVaD3Jg@mail.gmail.com>
 <CAPf2UMQ6uAwmqzDNkHiGS7znisbZbFrZY-6cC9L+CU2cjBFZDw@mail.gmail.com>
 <CAMeM8yax+Z1bsjdw=ic6VHhvkfD4W5cwvBAppyBqmkixuj9xdg@mail.gmail.com>
 <CAPf2UMSL4ho2p6RzFY52VMqKLsH0Ub6XSR7LFML0ekQ94ZJ+gg@mail.gmail.com>
 <CAMeM8yZxdtbng1Rf8s5f8NW8eTsFcfYXeVcvb0XEsH8R8fEdPw@mail.gmail.com>
Message-ID: <CAPf2UMSohLPbhfGYZFQRxbqqxuOhKADLeKcvRT0kLMtdBFGv_Q@mail.gmail.com>

That is some old presentation (from 2007). Where did you find it? Things
have changed since then.

The current documentation is indexed here:
http://www.itk.org/ITK/help/documentation.html
Especially the software guide: http://www.itk.org/ItkSoftwareGuide.pdf

Regards

On Wed, Nov 18, 2015 at 1:34 PM, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
wrote:

> Why is this information different from the one in the official (attached)
> tutorial, slide 27-28? Many thanks.
>
> On 18 November 2015 at 19:15, D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> ITK is largely a template library, which means it does not have a lot of
>> DLLs. Including headers is mostly sufficient. Also, ~/ITK_bin/*lib*/Debug/
>> should contain library files, *NOT* ~/ITK_bin/*bin*/Debug/.
>>
>> It looks like you have successfully built ITK. Now you can configure
>> projects which require ITK by pointing them (setting ITK_DIR variable) to
>> *~/ITK_bin/*.
>>
>> The simplest possible CMake configuration file for a program using ITK is
>> attached. You just need to provide C++ code (tester.cpp). It could be one
>> of the Wiki examples <http://itk.org/Wiki/ITK/Examples>. Then configure
>> it with CMake, and build it using the same generator as ITK (VS2015 x64).
>>
>> HTH
>>
>> On Wed, Nov 18, 2015 at 12:25 PM, T?nde Szil?gyi <
>> a.tunde.szilagyi at gmail.com> wrote:
>>
>>> Hi D?enan,
>>>
>>> Many thanks - there was a different patch that needed to be applied. See
>>> the description in the attached document. I summarize things below.
>>>
>>> System: Windows 10 64bit OS
>>>
>>> In summary:
>>> - re-installed Git [master] + patch that solved the errors
>>> - re-installed CMake
>>> - Configured and Generated Project in CMake (NO errors)
>>> - BUILD-ALL in VS 14 2015 (NO error message)
>>>
>>> Result:
>>> - the .../ITK_bin/bin/Debug does not contain the expected folders/files:
>>> ITKCommon, ITKBasicFilters, ITKAlgorithms, ITKNumerics, ITKFEM, ITKIO,
>>> ITKStatistics, ITKMetalIO, itkpng, itkzlib.
>>> - there is no Release folder in .../ITK_bin/bin/
>>>
>>> Each and every step is detailed and illustrated in the attached
>>> documents:
>>>
>>> 1. ITK_TOOLKIT_compilation_18112015.pdf (The end of this file contains a
>>> snapshot of the folders mentioned by You above.)
>>> 2. CMakeCache.txt
>>> 3. VS 14 2015 output: VS_14_2015_OUTPUT_18112015.pdf
>>>
>>> I would welcome your insights. Many thanks in advance.
>>>
>>> --
>>> Tunde
>>>
>>> On 18 November 2015 at 15:45, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> Since static libraries are built by default, ~/ITK_bin/bin/Debug/
>>>> contains only 3 exe files on my machine (and no DLLs).
>>>> However ~/ITK_bin/lib/Debug/ should contain a bunch of .lib files. If it is
>>>> so, you have successfully built ITK in debug mode.
>>>>
>>>> Regarding that patch, you should not have to apply it, it should be
>>>> included. What is the latest commit in the commit log of ITK? Mine is this:
>>>>
>>>> Revision: d248d5f52ad66b19346cab3e8336715a3a628980
>>>> Author: Hyun Jae Kang <hyunjae.kang at kitware.com>
>>>> Date: 2015-11-17 08:24:57
>>>> Message:
>>>> Merge topic 'warning-itkResourceProbe'
>>>>
>>>>
>>>> 3d3b908f COMP: Fix data-conversion warning message on itkResourceProbe
>>>> ----
>>>> Modified: Modules/Core/Common/include/itkResourceProbe.h
>>>> Modified: Modules/Core/Common/include/itkResourceProbe.hxx
>>>> Modified: CMakeLists.txt
>>>>
>>>>
>>>> On Wed, Nov 18, 2015 at 2:30 AM, T?nde Szil?gyi <
>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>
>>>>> Thank you, I have made the new selection to VS 14 2015 Win64 generator
>>>>> in CMake.
>>>>>
>>>>> However, the patch that solved the error messages is:
>>>>>
>>>>> http://review.source.kitware.com/#/c/20272/
>>>>>
>>>>> and NOT:
>>>>>
>>>>> http://review.source.kitware.com/#/c/20154/1
>>>>>
>>>>> I have now no errors during CMake configuration/generation step. The
>>>>> VS 14 2015 build is successful with 335 succeeded, 0 failed, 0 updated.
>>>>>
>>>>> BUT the ~/ITK_bin/bin/Debug/  does not contain the expected
>>>>> directories/files. By expected I mean the ones specified in the
>>>>> ITK_Tutorial:
>>>>>
>>>>> ITKCommon
>>>>> ITKBasicFilters
>>>>> ITKAlgorithms
>>>>> ITKNumerics
>>>>> ITKFEM
>>>>> ITKIO
>>>>> ITKStatistics
>>>>> ITKMetalIO
>>>>> itkpng
>>>>> itkzlib
>>>>>
>>>>> I have attached the CMakeCache.txt and the selection in the
>>>>> configuration stage in CMake.
>>>>>
>>>>> Many thanks in advance.
>>>>>
>>>>>
>>>>> On 18 November 2015 at 04:40, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>
>>>>>> What I meant is that the choice of generator should include Win64 in
>>>>>> its name, as shown in the attached screenshot. CMake executable is Win32,
>>>>>> that does not matter. Also, I just built ITK in 32 bit mode without issues,
>>>>>> so something else is amiss.
>>>>>>
>>>>>> Can you attach your CMakeCache.txt?
>>>>>>
>>>>>> On Tue, Nov 17, 2015 at 8:12 PM, T?nde Szil?gyi <
>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>
>>>>>>> I have tried without the patch, but I am receiving the same error
>>>>>>> message. My generator is VS 14 2015 (see CMake window on the LHS).
>>>>>>>
>>>>>>> Now, I have cleaned everything and started with a fresh installation:
>>>>>>> - Git Bash
>>>>>>> - CMake
>>>>>>> - ITK master
>>>>>>>
>>>>>>> I realized that only Win32 CMake exists on the official website:
>>>>>>> https://cmake.org/download/
>>>>>>>
>>>>>>> Is this what you refer to in your e-mail below? What else would you
>>>>>>> recommend?
>>>>>>>
>>>>>>> Many thanks.
>>>>>>>
>>>>>>>
>>>>>>> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> That patch was merged to master, so you don't need to apply it.
>>>>>>>>
>>>>>>>> I used VS2015 *Win64* as the generator. You seem to be using
>>>>>>>> *Win32*, that might make a difference.
>>>>>>>>
>>>>>>>> I used version 3.3.1, which I installed some time ago. You are
>>>>>>>> using release candidate version - I doubt that is the reason.
>>>>>>>>
>>>>>>>> Can you try a clean clone (git clone git://itk.org/ITK.git), and
>>>>>>>> then building into a clean directory?
>>>>>>>>
>>>>>>>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>
>>>>>>>>> During CMake I am getting the attached error message. All the
>>>>>>>>> error messages I receive is with reference to exe files starting with
>>>>>>>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>>>>>>>> this (http://review.source.kitware.com/#/c/20154/1 - Checkout),
>>>>>>>>> but this still results in the same error messages as before. I have
>>>>>>>>> attached one of the error messages that appear during CMake project
>>>>>>>>> configuration.
>>>>>>>>>
>>>>>>>>> Many thanks.
>>>>>>>>>
>>>>>>>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>>> Master branch from git://itk.org/ITK.git
>>>>>>>>>>
>>>>>>>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>
>>>>>>>>>>> Which ITK version did you use?
>>>>>>>>>>>
>>>>>>>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>>>> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> This configuration compiles fine in debug too.
>>>>>>>>>>>>
>>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <
>>>>>>>>>>>> dzenanz at gmail.com> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> Hi T?nde,
>>>>>>>>>>>>>
>>>>>>>>>>>>> checking out *master* branch and CMake configuration went
>>>>>>>>>>>>> fine. To speed up compile time, I disabled building of examples and
>>>>>>>>>>>>> testing. I also enabled ITK_LEGACY_REMOVE. I did not enable
>>>>>>>>>>>>> Module_ITKVtkGlue.
>>>>>>>>>>>>>
>>>>>>>>>>>>> Opening the solution file in VS2015 was fairly slow - it might
>>>>>>>>>>>>> have something to do with the fact I just installed it. Building in Release
>>>>>>>>>>>>> x64 finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>>>>>>>
>>>>>>>>>>>>> Regards,
>>>>>>>>>>>>> D?enan
>>>>>>>>>>>>>
>>>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>>>
>>>>>>>>>>>>>> Hi Everyone,
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> I would be interested whether anyone has managed to build the
>>>>>>>>>>>>>> ITK Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Many thanks.
>>>>>>>>>>>>>> Tunde
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> Community mailing list
>>>>>>>>>>>>>> Community at itk.org
>>>>>>>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> --
>>>>>>>>>>> --
>>>>>>>>>>> Tunde
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> --
>>>>>>>>> Tunde
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> --
>>>>>>> Tunde
>>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> --
>>>>> Tunde
>>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> --
>>> Tunde
>>>
>>
>>
>
>
> --
> --
> Tunde
>
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From seun at rogue-research.com  Wed Nov 18 16:08:46 2015
From: seun at rogue-research.com (Seun Odutola)
Date: Wed, 18 Nov 2015 16:08:46 -0500
Subject: [ITK] [ITK-dev] Header clashes with Apple
Message-ID: <B5511817-E436-4E9F-AB38-D78D3C4EAD02@rogue-research.com>

Hi Everyone,

    Just wanted to bring to your attention a problem I faced working on a project using ITK 4.9 on Mac OS X 10.11, Apple declares a macro called 'check?  that takes just a parameter and apparently there is a name clash with a typedef of ITK?s (see itkPromoteType.h).

// snippet
template <typename TA, typename TB> struct PromoteType
{
  static TA a;
  static TB b;

  // Aimed at supporting overloads
  template <typename T> static Details::Identity<1>::Type& check(typename Details::SizeToType<1,  TA, TB>::Type, T);
  template <typename T> static Details::Identity<2>::Type& check(typename Details::SizeToType<2,  TA, TB>::Type, T);

  // Common numeric types
  static Details::Identity<3 >::Type& itkcheck(typename Details::SizeToType<3,  TA, TB>::Type, int);

// end of snippet

 I set about trying to fix this issue and on renaming the ?check? in my case I chose ?itkcheck?, rebuilt ITK and ran my project everything worked fine.

My proposal to the team if indeed I?m right is the above typedef need renaming as we can?t change Apple?s implementation so it?s most likely ITK will need to fix this. Currently renaming the check typedef works fine. 
Thanks

Regards Seun

p.s: I could submit a patch if that?s fine but I would like to know what name the ITK team would prefer to be substituted for the ?check' typedef above.
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From matt.mccormick at kitware.com  Wed Nov 18 16:26:58 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 18 Nov 2015 16:26:58 -0500
Subject: [ITK] [ITK-dev] Header clashes with Apple
In-Reply-To: <B5511817-E436-4E9F-AB38-D78D3C4EAD02@rogue-research.com>
References: <B5511817-E436-4E9F-AB38-D78D3C4EAD02@rogue-research.com>
Message-ID: <CALzTN-TKKKHr30nPwq4J5kEhc=qnWuFmkzdwj5ySVqUTwKgRzw@mail.gmail.com>

Hi Seun,

Thanks for discussing the issue.

I think a good name would be "Check".  Could you please submit a patch? [1]

Thanks,
Matt

[1] http://www.itk.org/Wiki/ITK/Git/Develop


On Wed, Nov 18, 2015 at 4:08 PM, Seun Odutola <seun at rogue-research.com> wrote:
> Hi Everyone,
>
>     Just wanted to bring to your attention a problem I faced working on a project using ITK 4.9 on Mac OS X 10.11, Apple declares a macro called 'check?  that takes just a parameter and apparently there is a name clash with a typedef of ITK?s (see itkPromoteType.h).
>
> // snippet
> template <typename TA, typename TB> struct PromoteType
> {
>   static TA a;
>   static TB b;
>
>   // Aimed at supporting overloads
>   template <typename T> static Details::Identity<1>::Type& check(typename Details::SizeToType<1,  TA, TB>::Type, T);
>   template <typename T> static Details::Identity<2>::Type& check(typename Details::SizeToType<2,  TA, TB>::Type, T);
>
>   // Common numeric types
>   static Details::Identity<3 >::Type& itkcheck(typename Details::SizeToType<3,  TA, TB>::Type, int);
>
> // end of snippet
>
>  I set about trying to fix this issue and on renaming the ?check? in my case I chose ?itkcheck?, rebuilt ITK and ran my project everything worked fine.
>
> My proposal to the team if indeed I?m right is the above typedef need renaming as we can?t change Apple?s implementation so it?s most likely ITK will need to fix this. Currently renaming the check typedef works fine.
> Thanks
>
> Regards Seun
>
> p.s: I could submit a patch if that?s fine but I would like to know what name the ITK team would prefer to be substituted for the ?check' typedef above.
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
_______________________________________________
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From bill.lorensen at gmail.com  Wed Nov 18 16:28:44 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Wed, 18 Nov 2015 16:28:44 -0500
Subject: [ITK] [ITK-dev] Header clashes with Apple
In-Reply-To: <CALzTN-TKKKHr30nPwq4J5kEhc=qnWuFmkzdwj5ySVqUTwKgRzw@mail.gmail.com>
References: <B5511817-E436-4E9F-AB38-D78D3C4EAD02@rogue-research.com>
 <CALzTN-TKKKHr30nPwq4J5kEhc=qnWuFmkzdwj5ySVqUTwKgRzw@mail.gmail.com>
Message-ID: <CADZJ4hNw1WztDtpF+kOjotT1xke-hxVXx2asu8tt5sJPVMiOaQ@mail.gmail.com>

I think itkCheck might be better.

On Wed, Nov 18, 2015 at 4:26 PM, Matt McCormick
<matt.mccormick at kitware.com> wrote:
> Hi Seun,
>
> Thanks for discussing the issue.
>
> I think a good name would be "Check".  Could you please submit a patch? [1]
>
> Thanks,
> Matt
>
> [1] http://www.itk.org/Wiki/ITK/Git/Develop
>
>
> On Wed, Nov 18, 2015 at 4:08 PM, Seun Odutola <seun at rogue-research.com> wrote:
>> Hi Everyone,
>>
>>     Just wanted to bring to your attention a problem I faced working on a project using ITK 4.9 on Mac OS X 10.11, Apple declares a macro called 'check?  that takes just a parameter and apparently there is a name clash with a typedef of ITK?s (see itkPromoteType.h).
>>
>> // snippet
>> template <typename TA, typename TB> struct PromoteType
>> {
>>   static TA a;
>>   static TB b;
>>
>>   // Aimed at supporting overloads
>>   template <typename T> static Details::Identity<1>::Type& check(typename Details::SizeToType<1,  TA, TB>::Type, T);
>>   template <typename T> static Details::Identity<2>::Type& check(typename Details::SizeToType<2,  TA, TB>::Type, T);
>>
>>   // Common numeric types
>>   static Details::Identity<3 >::Type& itkcheck(typename Details::SizeToType<3,  TA, TB>::Type, int);
>>
>> // end of snippet
>>
>>  I set about trying to fix this issue and on renaming the ?check? in my case I chose ?itkcheck?, rebuilt ITK and ran my project everything worked fine.
>>
>> My proposal to the team if indeed I?m right is the above typedef need renaming as we can?t change Apple?s implementation so it?s most likely ITK will need to fix this. Currently renaming the check typedef works fine.
>> Thanks
>>
>> Regards Seun
>>
>> p.s: I could submit a patch if that?s fine but I would like to know what name the ITK team would prefer to be substituted for the ?check' typedef above.
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers



-- 
Unpaid intern in BillsBasement at noware dot com
_______________________________________________
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From matt.mccormick at kitware.com  Wed Nov 18 16:47:06 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 18 Nov 2015 16:47:06 -0500
Subject: [ITK] [ITK-dev] Missing ITK Minc2 header
In-Reply-To: <0D985148-B123-4B5E-A272-87E2EE407D45@rogue-research.com>
References: <0D985148-B123-4B5E-A272-87E2EE407D45@rogue-research.com>
Message-ID: <CALzTN-Qjkg_mR6MA5t07zW51q+RoD03=YxTv1qbQafLR2_sYgg@mail.gmail.com>

Hi Seun,

Please review this patch:

  http://review.source.kitware.com/#/c/20405/

Thanks,
Matt

On Wed, Nov 18, 2015 at 8:52 AM, Seun Odutola <seun at rogue-research.com> wrote:
> Hello All,
>
>      I am currently facing an issue, on installing ITK 4 (via cmake), I get
> a compile error as a result of a missing header (itk_minc2.h). It seems to
> that cmake doesn?t copy over the itk_minc2.h to the installation folder. For
> instance in the file (itkMINCImageIO.h) on installing I get this error
>
> #ifndef itkMINCImageIO_h
> #define itkMINCImageIO_h
>
> #include "itkImageIOBase.h"
>
> #include "itkMatrix.h"
>
> #include <itk_minc2.h> // ?> this line flags an error (itk_minc2.h file not
> found)
>
> #include "ITKIOMINCExport.h"
>
> please note that other included headers in this file seem to be fine except
> that in the comment above. I would like to know if this is a bug on it?s
> part & if so how does one get around this.
> Thanks
>
> Regards,
>    Seun
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
_______________________________________________
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From matt.mccormick at kitware.com  Wed Nov 18 16:50:16 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 18 Nov 2015 16:50:16 -0500
Subject: [ITK] registration - memory concerns
In-Reply-To: <CAKKNfuLy9ZeTuwKV21MAD49_16xfMKeDDP5Y=dQr=u0ndQ3iEw@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
 <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
 <CAJaJUhNMdRhM4JUvbk2RnbJSbn2CQm2c1q+B+S8VqVNzPh6-qw@mail.gmail.com>
 <CAKKNfuKdPXKPKK2ovrY9pywnJ87DV9Puy+HEHNBoBMTP8ybTGw@mail.gmail.com>
 <CAJaJUhOKpLnmvr-RiO75-k42VmGoRXm5dyX_KsRpADRRPdr3Rw@mail.gmail.com>
 <CAPf2UMRVnvOJrcE0w0Q+ngM2N=JCg1bcZJ65Mxz-g2P-BR5DSA@mail.gmail.com>
 <CAKKNfuLunxE4SPyj9dqhZc_ihX80v_NkH9sixZph-7pgQmWR_A@mail.gmail.com>
 <CAJaJUhNCy1knRBRVx2rkpSjYVDw4W_s+ax8osxArRAWtrvkxsQ@mail.gmail.com>
 <CAJaJUhNVs_GzOEfG7HCo_tH5AJbbWB4SDqWEHPMiEtsfbfLXjQ@mail.gmail.com>
 <CAKKNfuLy9ZeTuwKV21MAD49_16xfMKeDDP5Y=dQr=u0ndQ3iEw@mail.gmail.com>
Message-ID: <CALzTN-Szuw_-M+G0Yfy-XzfJQK-Pyg7dkzNuzC9cRMbYAA4egA@mail.gmail.com>

Hi Luigi,

It may be prudent to downsample the images using something like the
BinShrinkImageFilter.  Often, the full-resolution is overkill for the
registration task.

HTH,
Matt

On Wed, Nov 18, 2015 at 1:21 PM, Matias Montroull <matimontg at gmail.com> wrote:
> Luigi, I assume you are workimg on release mode right?
> Would you be able to send the cpp file that you are compiling to test?
>
> Matias
>
> On Nov 18, 2015 7:53 AM, "Luigi Riba" <ribaluigi at gmail.com> wrote:
>>
>> Dear all,
>>
>> I have tried your suggestions and I have simplified my code.
>> Unfortunately, I still have some issues:
>>
>> 1. I cannot read the two images as unsigned short. If I do like this,
>> VisualStudio compiler returns:
>>  Error 2 error C2440: 'initializing' : cannot convert from
>> 'itk::Concept::Detail::UniqueType_bool<false>' to
>> 'itk::Concept::Detail::UniqueType_bool<true>'
>> f:\libs\itk\modules\core\common\include\itkConceptChecking.h 796 1 affine3d
>>
>> 2. I have decided to read the images directly in float;
>>
>> 3. I have set everything to float but I have noticed no memory usage
>> differences between the "dobule" and "float" code. In particular, I have
>> set:
>>>
>>> typedef float InternalComputationValueType;
>>> typedef itk::AffineTransform< InternalComputationValueType, Dimension>
>>> TransformType;
>>> typedef
>>> itk::RegularStepGradientDescentOptimizerv4<InternalComputationValueType>
>>> OptimizerType;
>>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType, ImageType,
>>> ImageType, InternalComputationValueType>  MetricType;
>>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>>> TransformType> RegistrationType;
>>> typedef float CoordinateType;
>>> typedef itk::LinearInterpolateImageFunction<ImageType, CoordinateType>
>>> InterpolationType;
>>
>>
>> RECAP:
>> 1. I would like to reduce the memory usage of my registration code. In
>> fact, I work with unsigned short, i.e. 16 bit grayscale images, ~1Gb each
>> and memory usage gets high pretty soon (750MB images -> ~30GB total memory
>> usage)
>> 2. It has been suggested to set the algorithm to work with float instead
>> of double;
>> 3. How can I accomplish point 2.?
>> 4. Is point 2. the only viable solution in order to reduce memory usage?
>> 5  Is there a way to have a finer monitoring of memory usage. For the
>> moment I am using itkMemoryProbe which just gives me the total amount of
>> used memory.
>>
>> Thank you for your kind support,
>> Luigi
>>
>>
>> 2015-11-16 16:55 GMT+01:00 Luigi Riba <ribaluigi at gmail.com>:
>>>
>>> Dear D?enan and Matias,
>>>
>>> thank you very much for the help.
>>>
>>> I'll test your suggestion and I'll post back the results for the
>>> community.
>>>
>>> Best,
>>>
>>> Luigi
>>>
>>> 2015-11-16 16:53 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
>>>>
>>>> That was my assumption Luigi
>>>>
>>>> El lun., 16 de nov. de 2015 a la(s) 12:30 p. m., D?enan Zuki?
>>>> <dzenanz at gmail.com> escribi?:
>>>>>
>>>>> I believe Matias thought that your original pixel type was signed
>>>>> short.
>>>>>
>>>>> So just use the images you read as unsigned short (set them as input to
>>>>> the registration), and don't make another copy of the images by casting them
>>>>> to float.
>>>>>
>>>>> HTH
>>>>>
>>>>> On Mon, Nov 16, 2015 at 10:17 AM, Luigi Riba <ribaluigi at gmail.com>
>>>>> wrote:
>>>>>>
>>>>>> Dear Matias,
>>>>>>
>>>>>> thank you very much for your quick reply.
>>>>>>
>>>>>> Unfortunately, I didn't have time yet to test it. Anyhow, could you
>>>>>> please tell me the rationale behind it?
>>>>>>
>>>>>> In my code:
>>>>>>
>>>>>> I read two grayscale 16 bit .mhd images. To read them I define the
>>>>>> IOPixelTyep as unsigned short;
>>>>>> I cast them to the "operational" type called PixelType as float
>>>>>> I define all the registration objects templated on float.
>>>>>>
>>>>>> Why should I cast my images to PixelType == signed short?
>>>>>>
>>>>>> Thanks in advance for the support,
>>>>>> Luigi
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> 2015-11-10 15:45 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
>>>>>>>
>>>>>>> try this:
>>>>>>> typedef  signed short  PixelType;
>>>>>>>
>>>>>>>
>>>>>>> El mar., 10 de nov. de 2015 a la(s) 11:36 a. m., Luigi Riba
>>>>>>> <ribaluigi at gmail.com> escribi?:
>>>>>>>>
>>>>>>>> Dear Matt,
>>>>>>>>
>>>>>>>> I have tried following your suggestion but, unfortunately, it didn't
>>>>>>>> work out.
>>>>>>>>
>>>>>>>> In particular:
>>>>>>>>
>>>>>>>> I read a pair of uint16 images;
>>>>>>>> I cast them to float pixel type via the CastImageFilter;
>>>>>>>> I change the TInternalComputationValueType for the metric, the
>>>>>>>> optimizer, the transform and the registration doing something like:
>>>>>>>>>
>>>>>>>>> const unsigned int Dimension = 3;
>>>>>>>>>
>>>>>>>>> typedef float PixelType;
>>>>>>>>>
>>>>>>>>> typedef unsigned short IOPixelType;
>>>>>>>>>
>>>>>>>>> typedef itk::Image<IOPixelType, Dimension> IOImageType;
>>>>>>>>>
>>>>>>>>> typedef itk::Image<PixelType, Dimension> ImageType;
>>>>>>>>>
>>>>>>>>> typedef itk::AffineTransform<float, Dimension > TransformType;
>>>>>>>>>
>>>>>>>>> typedef itk::RegularStepGradientDescentOptimizerv4<float>
>>>>>>>>> OptimizerType;
>>>>>>>>>
>>>>>>>>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType,
>>>>>>>>> ImageType,ImageType,float> MetricType;
>>>>>>>>>
>>>>>>>>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>>>>>>>>> TransformType> RegistrationType;
>>>>>>>>>
>>>>>>>>> typedef itk::ResampleImageFilter<IOImageType, IOImageType,
>>>>>>>>> float,float> ResampleFilterType;
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> I have put one memory probe before the registration procedure and
>>>>>>>> one afterwards of it. In the "double" case and in the "float" case I've seen
>>>>>>>> the same memory consumption.
>>>>>>>>
>>>>>>>> Am I missing something? Are there other things I should change in my
>>>>>>>> code?
>>>>>>>>
>>>>>>>> Thanks again for the support,
>>>>>>>> Luigi
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> 2015-11-09 17:23 GMT+01:00 Matt McCormick
>>>>>>>> <matt.mccormick at kitware.com>:
>>>>>>>>>
>>>>>>>>> Hi Luigi,
>>>>>>>>>
>>>>>>>>> The type of optimizer should not have too large of an impact on
>>>>>>>>> memory
>>>>>>>>> consumption.  Using a gradient-free optimizer may help slightly,
>>>>>>>>> but
>>>>>>>>> try changing the pixel type of the input images or, if possible,
>>>>>>>>> the
>>>>>>>>> parameter type of the transformation, from double to float.
>>>>>>>>>
>>>>>>>>> HTH,
>>>>>>>>> Matt
>>>>>>>>>
>>>>>>>>> On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <ribaluigi at gmail.com>
>>>>>>>>> wrote:
>>>>>>>>> > Dear all,
>>>>>>>>> >
>>>>>>>>> > I am registering a couple of volumes with ITK 4 on windows 7 64
>>>>>>>>> > bit.
>>>>>>>>> >
>>>>>>>>> > I wrote a code based on the affine transformation, with the mean
>>>>>>>>> > square
>>>>>>>>> > error metric and the RegularStepGradientDescentOptimizerv4.
>>>>>>>>> > Unfortunately,
>>>>>>>>> > the memory usage is pretty high.
>>>>>>>>> >
>>>>>>>>> > I have checked memory consumption with the itkMemoryProbe and,
>>>>>>>>> > after looking
>>>>>>>>> > around on previous mailing list messages I have decided to try
>>>>>>>>> > with a
>>>>>>>>> > gradient free optimizer like the Nelder-Mead one.
>>>>>>>>> >
>>>>>>>>> > So I have rewrote the code using the AmoebaOptimizerV4 and I have
>>>>>>>>> > continued
>>>>>>>>> > monitoring the memory consumption via MemoryProbe. Unfortunately,
>>>>>>>>> > it seems
>>>>>>>>> > that nothing has changed. Is this working as expected? If this is
>>>>>>>>> > the case,
>>>>>>>>> > do you have any suggestion to gave me in order to reduce the
>>>>>>>>> > memory
>>>>>>>>> > consumption of the code?
>>>>>>>>> >
>>>>>>>>> > Thanks in advance for the help.
>>>>>>>>> >
>>>>>>>>> > Best,
>>>>>>>>> >
>>>>>>>>> > Luigi
>>>>>>>>> >
>>>>>>>>> > _______________________________________________
>>>>>>>>> > Community mailing list
>>>>>>>>> > Community at itk.org
>>>>>>>>> > http://public.kitware.com/mailman/listinfo/community
>>>>>>>>> >
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Community mailing list
>>>>>>>> Community at itk.org
>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>
>>>>>>> --
>>>>>>> Matias
>>>>>>
>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>>>>> Community mailing list
>>>>>> Community at itk.org
>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>
>>>>>
>>>> --
>>>> Matias
>>>
>>>
>>
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>

From matt.mccormick at kitware.com  Wed Nov 18 17:13:58 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 18 Nov 2015 17:13:58 -0500
Subject: [ITK] [ITK-users] Compile ITK for iPhone
In-Reply-To: <1447830999958-7588183.post@n2.nabble.com>
References: <1446685276695-7588136.post@n2.nabble.com>
 <1446819343470-7588145.post@n2.nabble.com>
 <CALzTN-RRRvu0yPGVCvBFXpcaTWdA8u0DsTQmrGbSU-42NNiDaA@mail.gmail.com>
 <1446880952822-7588149.post@n2.nabble.com>
 <CALzTN-SYR1crYUMPFte3PO8aLR1UcCtcaP4P76iijKhm2x4d8A@mail.gmail.com>
 <1447830999958-7588183.post@n2.nabble.com>
Message-ID: <CALzTN-Skf7SmOtbrxniqxnwC5QvyiArZT+DngQhgx-85CBWSGA@mail.gmail.com>

Hi Yassmin,

> Recently i use Xcode 7 on OS X el captain and the latest release from ITK
> 4.8.2. i follow this tutorial
> http://www.cs.sfu.ca/~hamarneh/ecopy/ij2010a.pdf
>
> 1- build itk using cmake through Xcode command GXcode and the build was
> successfully.
> 2- build the Xcode project on OS X under "Release" option and it was
> successfully.
> 3- error appear in vl_math when built the project under "iOS architecture",
> add this line "#define finite(x) ??inline?isfinited((double)x)" solve the
> problem, i didn't remove any dependance target as by remove them like the
> tutorial said i face some errors so i just left them.

It looks like this should be handled similarly to "isnan" in
vnl_math.cxx and in the VNL CMake configuration.


> 4- the library files didn't appear in this path "ITK BINARY
> DIR/bin/Release", i found them in /ITKBin/ITKBuild/lib/Debug.
>
>
> i now face the problem of add these paths to Header Search as they didn't
> exists,
> ? ITK SOURCE DIR/Code/Common
> ? ITK SOURCE DIR/Utilities/vxl/vcl
> ? ITK SOURCE DIR/Utilities/vxl/core
> ? ITK BINARY DIR/Utilities/vxl/vcl
> ? ITK BINARY DIR/Utilities/vxl/core
> ? ITK BINARY DIR

These are paths related to ITKv3.  There are many more and different
paths for ITKv4.  If you use CMake to configure your project, they
will automatically be populated.


HTH,
Matt
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From a.tunde.szilagyi at gmail.com  Thu Nov 19 01:50:07 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Thu, 19 Nov 2015 07:50:07 +0100
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAPf2UMSohLPbhfGYZFQRxbqqxuOhKADLeKcvRT0kLMtdBFGv_Q@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
 <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
 <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
 <CAPf2UMSN=ff2_pjKepVyd2V3coi_Fw33YwbSosPH+Fyv6hXPJg@mail.gmail.com>
 <CAMeM8ybeAARUD13gbwHv-NK17K2SpXNmJ2xYH-6_WbjVVaD3Jg@mail.gmail.com>
 <CAPf2UMQ6uAwmqzDNkHiGS7znisbZbFrZY-6cC9L+CU2cjBFZDw@mail.gmail.com>
 <CAMeM8yax+Z1bsjdw=ic6VHhvkfD4W5cwvBAppyBqmkixuj9xdg@mail.gmail.com>
 <CAPf2UMSL4ho2p6RzFY52VMqKLsH0Ub6XSR7LFML0ekQ94ZJ+gg@mail.gmail.com>
 <CAMeM8yZxdtbng1Rf8s5f8NW8eTsFcfYXeVcvb0XEsH8R8fEdPw@mail.gmail.com>
 <CAPf2UMSohLPbhfGYZFQRxbqqxuOhKADLeKcvRT0kLMtdBFGv_Q@mail.gmail.com>
Message-ID: <CAMeM8yavGrm0aydmNZrA8y4dar7sXhZJOjfQx58muLsXp5W3rQ@mail.gmail.com>

Many thanks.

On 18 November 2015 at 20:24, D?enan Zuki? <dzenanz at gmail.com> wrote:

> That is some old presentation (from 2007). Where did you find it? Things
> have changed since then.
>
> The current documentation is indexed here:
> http://www.itk.org/ITK/help/documentation.html
> Especially the software guide: http://www.itk.org/ItkSoftwareGuide.pdf
>
> Regards
>
> On Wed, Nov 18, 2015 at 1:34 PM, T?nde Szil?gyi <
> a.tunde.szilagyi at gmail.com> wrote:
>
>> Why is this information different from the one in the official (attached)
>> tutorial, slide 27-28? Many thanks.
>>
>> On 18 November 2015 at 19:15, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> ITK is largely a template library, which means it does not have a lot of
>>> DLLs. Including headers is mostly sufficient. Also, ~/ITK_bin/*lib*/Debug/
>>> should contain library files, *NOT* ~/ITK_bin/*bin*/Debug/.
>>>
>>> It looks like you have successfully built ITK. Now you can configure
>>> projects which require ITK by pointing them (setting ITK_DIR variable) to
>>> *~/ITK_bin/*.
>>>
>>> The simplest possible CMake configuration file for a program using ITK
>>> is attached. You just need to provide C++ code (tester.cpp). It could be
>>> one of the Wiki examples <http://itk.org/Wiki/ITK/Examples>. Then
>>> configure it with CMake, and build it using the same generator as ITK
>>> (VS2015 x64).
>>>
>>> HTH
>>>
>>> On Wed, Nov 18, 2015 at 12:25 PM, T?nde Szil?gyi <
>>> a.tunde.szilagyi at gmail.com> wrote:
>>>
>>>> Hi D?enan,
>>>>
>>>> Many thanks - there was a different patch that needed to be applied.
>>>> See the description in the attached document. I summarize things below.
>>>>
>>>> System: Windows 10 64bit OS
>>>>
>>>> In summary:
>>>> - re-installed Git [master] + patch that solved the errors
>>>> - re-installed CMake
>>>> - Configured and Generated Project in CMake (NO errors)
>>>> - BUILD-ALL in VS 14 2015 (NO error message)
>>>>
>>>> Result:
>>>> - the .../ITK_bin/bin/Debug does not contain the expected
>>>> folders/files:
>>>> ITKCommon, ITKBasicFilters, ITKAlgorithms, ITKNumerics, ITKFEM, ITKIO,
>>>> ITKStatistics, ITKMetalIO, itkpng, itkzlib.
>>>> - there is no Release folder in .../ITK_bin/bin/
>>>>
>>>> Each and every step is detailed and illustrated in the attached
>>>> documents:
>>>>
>>>> 1. ITK_TOOLKIT_compilation_18112015.pdf (The end of this file contains
>>>> a snapshot of the folders mentioned by You above.)
>>>> 2. CMakeCache.txt
>>>> 3. VS 14 2015 output: VS_14_2015_OUTPUT_18112015.pdf
>>>>
>>>> I would welcome your insights. Many thanks in advance.
>>>>
>>>> --
>>>> Tunde
>>>>
>>>> On 18 November 2015 at 15:45, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>
>>>>> Since static libraries are built by default, ~/ITK_bin/bin/Debug/
>>>>> contains only 3 exe files on my machine (and no DLLs).
>>>>> However ~/ITK_bin/lib/Debug/ should contain a bunch of .lib files. If it is
>>>>> so, you have successfully built ITK in debug mode.
>>>>>
>>>>> Regarding that patch, you should not have to apply it, it should be
>>>>> included. What is the latest commit in the commit log of ITK? Mine is this:
>>>>>
>>>>> Revision: d248d5f52ad66b19346cab3e8336715a3a628980
>>>>> Author: Hyun Jae Kang <hyunjae.kang at kitware.com>
>>>>> Date: 2015-11-17 08:24:57
>>>>> Message:
>>>>> Merge topic 'warning-itkResourceProbe'
>>>>>
>>>>>
>>>>> 3d3b908f COMP: Fix data-conversion warning message on itkResourceProbe
>>>>> ----
>>>>> Modified: Modules/Core/Common/include/itkResourceProbe.h
>>>>> Modified: Modules/Core/Common/include/itkResourceProbe.hxx
>>>>> Modified: CMakeLists.txt
>>>>>
>>>>>
>>>>> On Wed, Nov 18, 2015 at 2:30 AM, T?nde Szil?gyi <
>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>
>>>>>> Thank you, I have made the new selection to VS 14 2015 Win64
>>>>>> generator in CMake.
>>>>>>
>>>>>> However, the patch that solved the error messages is:
>>>>>>
>>>>>> http://review.source.kitware.com/#/c/20272/
>>>>>>
>>>>>> and NOT:
>>>>>>
>>>>>> http://review.source.kitware.com/#/c/20154/1
>>>>>>
>>>>>> I have now no errors during CMake configuration/generation step. The
>>>>>> VS 14 2015 build is successful with 335 succeeded, 0 failed, 0 updated.
>>>>>>
>>>>>> BUT the ~/ITK_bin/bin/Debug/  does not contain the expected
>>>>>> directories/files. By expected I mean the ones specified in the
>>>>>> ITK_Tutorial:
>>>>>>
>>>>>> ITKCommon
>>>>>> ITKBasicFilters
>>>>>> ITKAlgorithms
>>>>>> ITKNumerics
>>>>>> ITKFEM
>>>>>> ITKIO
>>>>>> ITKStatistics
>>>>>> ITKMetalIO
>>>>>> itkpng
>>>>>> itkzlib
>>>>>>
>>>>>> I have attached the CMakeCache.txt and the selection in the
>>>>>> configuration stage in CMake.
>>>>>>
>>>>>> Many thanks in advance.
>>>>>>
>>>>>>
>>>>>> On 18 November 2015 at 04:40, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>>
>>>>>>> What I meant is that the choice of generator should include Win64 in
>>>>>>> its name, as shown in the attached screenshot. CMake executable is Win32,
>>>>>>> that does not matter. Also, I just built ITK in 32 bit mode without issues,
>>>>>>> so something else is amiss.
>>>>>>>
>>>>>>> Can you attach your CMakeCache.txt?
>>>>>>>
>>>>>>> On Tue, Nov 17, 2015 at 8:12 PM, T?nde Szil?gyi <
>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>
>>>>>>>> I have tried without the patch, but I am receiving the same error
>>>>>>>> message. My generator is VS 14 2015 (see CMake window on the LHS).
>>>>>>>>
>>>>>>>> Now, I have cleaned everything and started with a fresh
>>>>>>>> installation:
>>>>>>>> - Git Bash
>>>>>>>> - CMake
>>>>>>>> - ITK master
>>>>>>>>
>>>>>>>> I realized that only Win32 CMake exists on the official website:
>>>>>>>> https://cmake.org/download/
>>>>>>>>
>>>>>>>> Is this what you refer to in your e-mail below? What else would you
>>>>>>>> recommend?
>>>>>>>>
>>>>>>>> Many thanks.
>>>>>>>>
>>>>>>>>
>>>>>>>> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> That patch was merged to master, so you don't need to apply it.
>>>>>>>>>
>>>>>>>>> I used VS2015 *Win64* as the generator. You seem to be using
>>>>>>>>> *Win32*, that might make a difference.
>>>>>>>>>
>>>>>>>>> I used version 3.3.1, which I installed some time ago. You are
>>>>>>>>> using release candidate version - I doubt that is the reason.
>>>>>>>>>
>>>>>>>>> Can you try a clean clone (git clone git://itk.org/ITK.git), and
>>>>>>>>> then building into a clean directory?
>>>>>>>>>
>>>>>>>>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>
>>>>>>>>>> During CMake I am getting the attached error message. All the
>>>>>>>>>> error messages I receive is with reference to exe files starting with
>>>>>>>>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>>>>>>>>> this (http://review.source.kitware.com/#/c/20154/1 - Checkout),
>>>>>>>>>> but this still results in the same error messages as before. I have
>>>>>>>>>> attached one of the error messages that appear during CMake project
>>>>>>>>>> configuration.
>>>>>>>>>>
>>>>>>>>>> Many thanks.
>>>>>>>>>>
>>>>>>>>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>>> wrote:
>>>>>>>>>>
>>>>>>>>>>> Master branch from git://itk.org/ITK.git
>>>>>>>>>>>
>>>>>>>>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> Which ITK version did you use?
>>>>>>>>>>>>
>>>>>>>>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> This configuration compiles fine in debug too.
>>>>>>>>>>>>>
>>>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <
>>>>>>>>>>>>> dzenanz at gmail.com> wrote:
>>>>>>>>>>>>>
>>>>>>>>>>>>>> Hi T?nde,
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> checking out *master* branch and CMake configuration went
>>>>>>>>>>>>>> fine. To speed up compile time, I disabled building of examples and
>>>>>>>>>>>>>> testing. I also enabled ITK_LEGACY_REMOVE. I did not enable
>>>>>>>>>>>>>> Module_ITKVtkGlue.
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Opening the solution file in VS2015 was fairly slow - it
>>>>>>>>>>>>>> might have something to do with the fact I just installed it. Building in
>>>>>>>>>>>>>> Release x64 finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> Regards,
>>>>>>>>>>>>>> D?enan
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Hi Everyone,
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> I would be interested whether anyone has managed to build
>>>>>>>>>>>>>>> the ITK Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Many thanks.
>>>>>>>>>>>>>>> Tunde
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>> Community mailing list
>>>>>>>>>>>>>>> Community at itk.org
>>>>>>>>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> --
>>>>>>>>>>>> --
>>>>>>>>>>>> Tunde
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> --
>>>>>>>>>> Tunde
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> --
>>>>>>>> Tunde
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> --
>>>>>> Tunde
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> --
>>>> Tunde
>>>>
>>>
>>>
>>
>>
>> --
>> --
>> Tunde
>>
>
>


-- 
--
Tunde
-------------- next part --------------
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From osubachev at gmail.com  Thu Nov 19 02:01:31 2015
From: osubachev at gmail.com (Oleg Subachev)
Date: Thu, 19 Nov 2015 12:01:31 +0500
Subject: [ITK] How to get to get image similarity metrics under .NET ?
In-Reply-To: <D271FDCB.66B3%yanivz@mail.nih.gov>
References: <CAD0V+a2fhGDFbCg8wHC9+NZi8rda278_nhc2ETkTAXQZEQ5JXw@mail.gmail.com>
 <D885E0B0-F39F-4076-986E-A48115E8BD21@mail.nih.gov>
 <CAD0V+a0hWFRsvctcV0TPbBPaAZzQvhJhYyhr-+2w6OTMdvctEQ@mail.gmail.com>
 <D271FDCB.66B3%yanivz@mail.nih.gov>
Message-ID: <CAD0V+a2MTa=owoZADTXy60KRifrVh57FVc_aq2ofe8qxvxk6ig@mail.gmail.com>

Thanks all of you.
But now the code:
using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
{
method.SetMetricAsMattesMutualInformation();
double metric = method.MetricEvaluate(
SimpleITK.ReadImage( "1.png", PixelIDValueEnum.sitkFloat32
),SimpleITK.ReadImage( "2.png", PixelIDValueEnum.sitkFloat32 ));
}

throws new exception:
{"Exception thrown in SimpleITK
ImageRegistrationMethod_MetricEvaluate:
..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegistrationMethod.cxx:922:\nsitk::ERROR:
Unexpected error converting initial transform! Possible miss matching
dimensions!"}

-- 
Best regards,
Oleg Subachev


On Wed, Nov 18, 2015 at 8:14 PM, Yaniv, Ziv Rafael (NIH/NLM/LHC) [C]
<zivrafael.yaniv at nih.gov> wrote:
> Hello Oleg,
>
> The ImageRegistrationMethod only supports images with pixel type
> sitkFloat32 and sitkFloat64. You can either specify the pixel type when
> reading the image
> (http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#a02ff
> c30c3c55dd9eeff3f76ba19f35e7) or read the image with its native pixel type
> and then
> use the SimpleITK Cast function
> (http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#af8c9
> d7cc96a299a05890e9c3db911885), casting it to either of these two types.
>
>    Ziv
>
>
>
> On 11/18/15, 9:51 AM, "Oleg Subachev" <osubachev at gmail.com> wrote:
>
>>Thanks, Brad.
>>
>>But when I try this code:
>>using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
>>{
>>method.SetMetricAsMattesMutualInformation( 50 );
>>double metric = method.MetricEvaluate( SimpleITK.ReadImage( "1.png" ),
>>SimpleITK.ReadImage( "2.png" ) );
>>}
>>
>>I get the exception:
>>{"Exception thrown in SimpleITK
>>ImageRegistrationMethod_MetricEvaluate:
>>..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegistrat
>>ionMethod.cxx:862:\nsitk::ERROR:
>>Filter does not support fixed image type: vector of 8-bit unsigned
>>integer"}
>>
>>What's wrong ?
>>What is the simplest way to get similarity value of two image files ?
>>
>>--
>>Best regards,
>>Oleg Subachev
>>
>>On Tue, Nov 17, 2015 at 6:41 PM, Bradley Lowekamp
>><blowekamp at mail.nih.gov> wrote:
>>> Hello,
>>>
>>> You should look into SimpleITK's
>>>ImageRegistrationMethod::MetricEvaluate( Image, Image ) member function.
>>>
>>> Here is a Python example of using the method, C# should be similar:
>>>
>>>
>>>http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/63_Registr
>>>ation_Initialization.html
>>>
>>> HTH,
>>> Brad
>>>
>>> On Nov 17, 2015, at 8:24 AM, Oleg Subachev <osubachev at gmail.com> wrote:
>>>
>>>> I need to get similarity metrics for 2D images under .NET.
>>>> According to ITK documentation
>>>> (http://www.itk.org/Doxygen/html/ImageSimilarityMetricsPage.html)
>>>> there are several Image To Image metrics available.
>>>> ITK itself contains corresponding methods.
>>>> But I cannot find those methods in SimpleITK :-(
>>>> There is SimpleITK.NormalizedCorrelation(Image, Image, Image) method,
>>>> but it seems to have nothing with similarity metrics.
>>>>
>>>> How to get to get image similarity metrics under .NET ?
>>>>
>>>> --
>>>> Best regards,
>>>>
>>>> Oleg Subachev
>>>> _______________________________________________
>>>> Community mailing list
>>>> Community at itk.org
>>>> http://public.kitware.com/mailman/listinfo/community
>>>
>>_______________________________________________
>>Community mailing list
>>Community at itk.org
>>http://public.kitware.com/mailman/listinfo/community
>

From a.tunde.szilagyi at gmail.com  Thu Nov 19 02:14:42 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Thu, 19 Nov 2015 08:14:42 +0100
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAMeM8yavGrm0aydmNZrA8y4dar7sXhZJOjfQx58muLsXp5W3rQ@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
 <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
 <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
 <CAPf2UMSN=ff2_pjKepVyd2V3coi_Fw33YwbSosPH+Fyv6hXPJg@mail.gmail.com>
 <CAMeM8ybeAARUD13gbwHv-NK17K2SpXNmJ2xYH-6_WbjVVaD3Jg@mail.gmail.com>
 <CAPf2UMQ6uAwmqzDNkHiGS7znisbZbFrZY-6cC9L+CU2cjBFZDw@mail.gmail.com>
 <CAMeM8yax+Z1bsjdw=ic6VHhvkfD4W5cwvBAppyBqmkixuj9xdg@mail.gmail.com>
 <CAPf2UMSL4ho2p6RzFY52VMqKLsH0Ub6XSR7LFML0ekQ94ZJ+gg@mail.gmail.com>
 <CAMeM8yZxdtbng1Rf8s5f8NW8eTsFcfYXeVcvb0XEsH8R8fEdPw@mail.gmail.com>
 <CAPf2UMSohLPbhfGYZFQRxbqqxuOhKADLeKcvRT0kLMtdBFGv_Q@mail.gmail.com>
 <CAMeM8yavGrm0aydmNZrA8y4dar7sXhZJOjfQx58muLsXp5W3rQ@mail.gmail.com>
Message-ID: <CAMeM8yaJ4vn5VYzmTBHpSwoxuBdn7vPTOPoobFF8EiUtuEhsLA@mail.gmail.com>

The presentation that I have attached can be found on the first website
cited in your e-mail:

http://www.itk.org/CourseWare/Training/GettingStarted-I.pdf

The reason I am making this point is because one week ago I was getting
those results, and now I am not. I do not believe that the software has
changed so fast. So I am wondering what am I doing wrong.

Many thanks.




On 19 November 2015 at 07:50, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
wrote:

> Many thanks.
>
> On 18 November 2015 at 20:24, D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> That is some old presentation (from 2007). Where did you find it? Things
>> have changed since then.
>>
>> The current documentation is indexed here:
>> http://www.itk.org/ITK/help/documentation.html
>> Especially the software guide: http://www.itk.org/ItkSoftwareGuide.pdf
>>
>> Regards
>>
>> On Wed, Nov 18, 2015 at 1:34 PM, T?nde Szil?gyi <
>> a.tunde.szilagyi at gmail.com> wrote:
>>
>>> Why is this information different from the one in the official
>>> (attached) tutorial, slide 27-28? Many thanks.
>>>
>>> On 18 November 2015 at 19:15, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> ITK is largely a template library, which means it does not have a lot
>>>> of DLLs. Including headers is mostly sufficient. Also, ~/ITK_bin/*lib*/Debug/
>>>> should contain library files, *NOT* ~/ITK_bin/*bin*/Debug/.
>>>>
>>>> It looks like you have successfully built ITK. Now you can configure
>>>> projects which require ITK by pointing them (setting ITK_DIR variable) to
>>>> *~/ITK_bin/*.
>>>>
>>>> The simplest possible CMake configuration file for a program using ITK
>>>> is attached. You just need to provide C++ code (tester.cpp). It could be
>>>> one of the Wiki examples <http://itk.org/Wiki/ITK/Examples>. Then
>>>> configure it with CMake, and build it using the same generator as ITK
>>>> (VS2015 x64).
>>>>
>>>> HTH
>>>>
>>>> On Wed, Nov 18, 2015 at 12:25 PM, T?nde Szil?gyi <
>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>
>>>>> Hi D?enan,
>>>>>
>>>>> Many thanks - there was a different patch that needed to be applied.
>>>>> See the description in the attached document. I summarize things below.
>>>>>
>>>>> System: Windows 10 64bit OS
>>>>>
>>>>> In summary:
>>>>> - re-installed Git [master] + patch that solved the errors
>>>>> - re-installed CMake
>>>>> - Configured and Generated Project in CMake (NO errors)
>>>>> - BUILD-ALL in VS 14 2015 (NO error message)
>>>>>
>>>>> Result:
>>>>> - the .../ITK_bin/bin/Debug does not contain the expected
>>>>> folders/files:
>>>>> ITKCommon, ITKBasicFilters, ITKAlgorithms, ITKNumerics, ITKFEM,
>>>>> ITKIO, ITKStatistics, ITKMetalIO, itkpng, itkzlib.
>>>>> - there is no Release folder in .../ITK_bin/bin/
>>>>>
>>>>> Each and every step is detailed and illustrated in the attached
>>>>> documents:
>>>>>
>>>>> 1. ITK_TOOLKIT_compilation_18112015.pdf (The end of this file contains
>>>>> a snapshot of the folders mentioned by You above.)
>>>>> 2. CMakeCache.txt
>>>>> 3. VS 14 2015 output: VS_14_2015_OUTPUT_18112015.pdf
>>>>>
>>>>> I would welcome your insights. Many thanks in advance.
>>>>>
>>>>> --
>>>>> Tunde
>>>>>
>>>>> On 18 November 2015 at 15:45, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>
>>>>>> Since static libraries are built by default, ~/ITK_bin/bin/Debug/
>>>>>> contains only 3 exe files on my machine (and no DLLs).
>>>>>> However ~/ITK_bin/lib/Debug/ should contain a bunch of .lib files. If it is
>>>>>> so, you have successfully built ITK in debug mode.
>>>>>>
>>>>>> Regarding that patch, you should not have to apply it, it should be
>>>>>> included. What is the latest commit in the commit log of ITK? Mine is this:
>>>>>>
>>>>>> Revision: d248d5f52ad66b19346cab3e8336715a3a628980
>>>>>> Author: Hyun Jae Kang <hyunjae.kang at kitware.com>
>>>>>> Date: 2015-11-17 08:24:57
>>>>>> Message:
>>>>>> Merge topic 'warning-itkResourceProbe'
>>>>>>
>>>>>>
>>>>>> 3d3b908f COMP: Fix data-conversion warning message on itkResourceProbe
>>>>>> ----
>>>>>> Modified: Modules/Core/Common/include/itkResourceProbe.h
>>>>>> Modified: Modules/Core/Common/include/itkResourceProbe.hxx
>>>>>> Modified: CMakeLists.txt
>>>>>>
>>>>>>
>>>>>> On Wed, Nov 18, 2015 at 2:30 AM, T?nde Szil?gyi <
>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>
>>>>>>> Thank you, I have made the new selection to VS 14 2015 Win64
>>>>>>> generator in CMake.
>>>>>>>
>>>>>>> However, the patch that solved the error messages is:
>>>>>>>
>>>>>>> http://review.source.kitware.com/#/c/20272/
>>>>>>>
>>>>>>> and NOT:
>>>>>>>
>>>>>>> http://review.source.kitware.com/#/c/20154/1
>>>>>>>
>>>>>>> I have now no errors during CMake configuration/generation step. The
>>>>>>> VS 14 2015 build is successful with 335 succeeded, 0 failed, 0 updated.
>>>>>>>
>>>>>>> BUT the ~/ITK_bin/bin/Debug/  does not contain the expected
>>>>>>> directories/files. By expected I mean the ones specified in the
>>>>>>> ITK_Tutorial:
>>>>>>>
>>>>>>> ITKCommon
>>>>>>> ITKBasicFilters
>>>>>>> ITKAlgorithms
>>>>>>> ITKNumerics
>>>>>>> ITKFEM
>>>>>>> ITKIO
>>>>>>> ITKStatistics
>>>>>>> ITKMetalIO
>>>>>>> itkpng
>>>>>>> itkzlib
>>>>>>>
>>>>>>> I have attached the CMakeCache.txt and the selection in the
>>>>>>> configuration stage in CMake.
>>>>>>>
>>>>>>> Many thanks in advance.
>>>>>>>
>>>>>>>
>>>>>>> On 18 November 2015 at 04:40, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> What I meant is that the choice of generator should include Win64
>>>>>>>> in its name, as shown in the attached screenshot. CMake executable is
>>>>>>>> Win32, that does not matter. Also, I just built ITK in 32 bit mode without
>>>>>>>> issues, so something else is amiss.
>>>>>>>>
>>>>>>>> Can you attach your CMakeCache.txt?
>>>>>>>>
>>>>>>>> On Tue, Nov 17, 2015 at 8:12 PM, T?nde Szil?gyi <
>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>
>>>>>>>>> I have tried without the patch, but I am receiving the same error
>>>>>>>>> message. My generator is VS 14 2015 (see CMake window on the LHS).
>>>>>>>>>
>>>>>>>>> Now, I have cleaned everything and started with a fresh
>>>>>>>>> installation:
>>>>>>>>> - Git Bash
>>>>>>>>> - CMake
>>>>>>>>> - ITK master
>>>>>>>>>
>>>>>>>>> I realized that only Win32 CMake exists on the official website:
>>>>>>>>> https://cmake.org/download/
>>>>>>>>>
>>>>>>>>> Is this what you refer to in your e-mail below? What else would
>>>>>>>>> you recommend?
>>>>>>>>>
>>>>>>>>> Many thanks.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>>> That patch was merged to master, so you don't need to apply it.
>>>>>>>>>>
>>>>>>>>>> I used VS2015 *Win64* as the generator. You seem to be using
>>>>>>>>>> *Win32*, that might make a difference.
>>>>>>>>>>
>>>>>>>>>> I used version 3.3.1, which I installed some time ago. You are
>>>>>>>>>> using release candidate version - I doubt that is the reason.
>>>>>>>>>>
>>>>>>>>>> Can you try a clean clone (git clone git://itk.org/ITK.git), and
>>>>>>>>>> then building into a clean directory?
>>>>>>>>>>
>>>>>>>>>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>
>>>>>>>>>>> During CMake I am getting the attached error message. All the
>>>>>>>>>>> error messages I receive is with reference to exe files starting with
>>>>>>>>>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>>>>>>>>>> this (http://review.source.kitware.com/#/c/20154/1 - Checkout),
>>>>>>>>>>> but this still results in the same error messages as before. I have
>>>>>>>>>>> attached one of the error messages that appear during CMake project
>>>>>>>>>>> configuration.
>>>>>>>>>>>
>>>>>>>>>>> Many thanks.
>>>>>>>>>>>
>>>>>>>>>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>>>> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> Master branch from git://itk.org/ITK.git
>>>>>>>>>>>>
>>>>>>>>>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> Which ITK version did you use?
>>>>>>>>>>>>>
>>>>>>>>>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>
>>>>>>>>>>>>>> This configuration compiles fine in debug too.
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <
>>>>>>>>>>>>>> dzenanz at gmail.com> wrote:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Hi T?nde,
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> checking out *master* branch and CMake configuration went
>>>>>>>>>>>>>>> fine. To speed up compile time, I disabled building of examples and
>>>>>>>>>>>>>>> testing. I also enabled ITK_LEGACY_REMOVE. I did not enable
>>>>>>>>>>>>>>> Module_ITKVtkGlue.
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Opening the solution file in VS2015 was fairly slow - it
>>>>>>>>>>>>>>> might have something to do with the fact I just installed it. Building in
>>>>>>>>>>>>>>> Release x64 finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Regards,
>>>>>>>>>>>>>>> D?enan
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Hi Everyone,
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> I would be interested whether anyone has managed to build
>>>>>>>>>>>>>>>> the ITK Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Many thanks.
>>>>>>>>>>>>>>>> Tunde
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>> Community mailing list
>>>>>>>>>>>>>>>> Community at itk.org
>>>>>>>>>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> --
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Tunde
>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> --
>>>>>>>>>>> --
>>>>>>>>>>> Tunde
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> --
>>>>>>>>> Tunde
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> --
>>>>>>> Tunde
>>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> --
>>>>> Tunde
>>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> --
>>> Tunde
>>>
>>
>>
>
>
> --
> --
> Tunde
>



-- 
--
Tunde
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From dan.muel at gmail.com  Thu Nov 19 03:14:11 2015
From: dan.muel at gmail.com (Dan Mueller)
Date: Thu, 19 Nov 2015 18:44:11 +1030
Subject: [ITK] How to get to get image similarity metrics under .NET ?
In-Reply-To: <CAD0V+a2MTa=owoZADTXy60KRifrVh57FVc_aq2ofe8qxvxk6ig@mail.gmail.com>
References: <CAD0V+a2fhGDFbCg8wHC9+NZi8rda278_nhc2ETkTAXQZEQ5JXw@mail.gmail.com>
 <D885E0B0-F39F-4076-986E-A48115E8BD21@mail.nih.gov>
 <CAD0V+a0hWFRsvctcV0TPbBPaAZzQvhJhYyhr-+2w6OTMdvctEQ@mail.gmail.com>
 <D271FDCB.66B3%yanivz@mail.nih.gov>
 <CAD0V+a2MTa=owoZADTXy60KRifrVh57FVc_aq2ofe8qxvxk6ig@mail.gmail.com>
Message-ID: <CAPNvZ5YbeN2RtkOYCDz_pK0GVhStXNDQa4mMZ4JueKGOazgc9w@mail.gmail.com>

Hi,

The error message seems to suggest 1.PNG and 2.PNG are differing sizes.
Perhaps you could crop one of the images so they are equal sizes...

Good luck, Dan
On 19 Nov 2015 5:32 pm, "Oleg Subachev" <osubachev at gmail.com> wrote:

> Thanks all of you.
> But now the code:
> using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
> {
> method.SetMetricAsMattesMutualInformation();
> double metric = method.MetricEvaluate(
> SimpleITK.ReadImage( "1.png", PixelIDValueEnum.sitkFloat32
> ),SimpleITK.ReadImage( "2.png", PixelIDValueEnum.sitkFloat32 ));
> }
>
> throws new exception:
> {"Exception thrown in SimpleITK
> ImageRegistrationMethod_MetricEvaluate:
>
> ..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegistrationMethod.cxx:922:\nsitk::ERROR:
> Unexpected error converting initial transform! Possible miss matching
> dimensions!"}
>
> --
> Best regards,
> Oleg Subachev
>
>
> On Wed, Nov 18, 2015 at 8:14 PM, Yaniv, Ziv Rafael (NIH/NLM/LHC) [C]
> <zivrafael.yaniv at nih.gov> wrote:
> > Hello Oleg,
> >
> > The ImageRegistrationMethod only supports images with pixel type
> > sitkFloat32 and sitkFloat64. You can either specify the pixel type when
> > reading the image
> > (
> http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#a02ff
> > c30c3c55dd9eeff3f76ba19f35e7) or read the image with its native pixel
> type
> > and then
> > use the SimpleITK Cast function
> > (
> http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#af8c9
> > d7cc96a299a05890e9c3db911885), casting it to either of these two types.
> >
> >    Ziv
> >
> >
> >
> > On 11/18/15, 9:51 AM, "Oleg Subachev" <osubachev at gmail.com> wrote:
> >
> >>Thanks, Brad.
> >>
> >>But when I try this code:
> >>using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
> >>{
> >>method.SetMetricAsMattesMutualInformation( 50 );
> >>double metric = method.MetricEvaluate( SimpleITK.ReadImage( "1.png" ),
> >>SimpleITK.ReadImage( "2.png" ) );
> >>}
> >>
> >>I get the exception:
> >>{"Exception thrown in SimpleITK
> >>ImageRegistrationMethod_MetricEvaluate:
>
> >>..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegistrat
> >>ionMethod.cxx:862:\nsitk::ERROR:
> >>Filter does not support fixed image type: vector of 8-bit unsigned
> >>integer"}
> >>
> >>What's wrong ?
> >>What is the simplest way to get similarity value of two image files ?
> >>
> >>--
> >>Best regards,
> >>Oleg Subachev
> >>
> >>On Tue, Nov 17, 2015 at 6:41 PM, Bradley Lowekamp
> >><blowekamp at mail.nih.gov> wrote:
> >>> Hello,
> >>>
> >>> You should look into SimpleITK's
> >>>ImageRegistrationMethod::MetricEvaluate( Image, Image ) member function.
> >>>
> >>> Here is a Python example of using the method, C# should be similar:
> >>>
> >>>
> >>>
> http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/63_Registr
> >>>ation_Initialization.html
> >>>
> >>> HTH,
> >>> Brad
> >>>
> >>> On Nov 17, 2015, at 8:24 AM, Oleg Subachev <osubachev at gmail.com>
> wrote:
> >>>
> >>>> I need to get similarity metrics for 2D images under .NET.
> >>>> According to ITK documentation
> >>>> (http://www.itk.org/Doxygen/html/ImageSimilarityMetricsPage.html)
> >>>> there are several Image To Image metrics available.
> >>>> ITK itself contains corresponding methods.
> >>>> But I cannot find those methods in SimpleITK :-(
> >>>> There is SimpleITK.NormalizedCorrelation(Image, Image, Image) method,
> >>>> but it seems to have nothing with similarity metrics.
> >>>>
> >>>> How to get to get image similarity metrics under .NET ?
> >>>>
> >>>> --
> >>>> Best regards,
> >>>>
> >>>> Oleg Subachev
> >>>> _______________________________________________
> >>>> Community mailing list
> >>>> Community at itk.org
> >>>> http://public.kitware.com/mailman/listinfo/community
> >>>
> >>_______________________________________________
> >>Community mailing list
> >>Community at itk.org
> >>http://public.kitware.com/mailman/listinfo/community
> >
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
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From ribaluigi at gmail.com  Thu Nov 19 03:47:52 2015
From: ribaluigi at gmail.com (Luigi Riba)
Date: Thu, 19 Nov 2015 09:47:52 +0100
Subject: [ITK] registration - memory concerns
In-Reply-To: <CALzTN-Szuw_-M+G0Yfy-XzfJQK-Pyg7dkzNuzC9cRMbYAA4egA@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
 <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
 <CAJaJUhNMdRhM4JUvbk2RnbJSbn2CQm2c1q+B+S8VqVNzPh6-qw@mail.gmail.com>
 <CAKKNfuKdPXKPKK2ovrY9pywnJ87DV9Puy+HEHNBoBMTP8ybTGw@mail.gmail.com>
 <CAJaJUhOKpLnmvr-RiO75-k42VmGoRXm5dyX_KsRpADRRPdr3Rw@mail.gmail.com>
 <CAPf2UMRVnvOJrcE0w0Q+ngM2N=JCg1bcZJ65Mxz-g2P-BR5DSA@mail.gmail.com>
 <CAKKNfuLunxE4SPyj9dqhZc_ihX80v_NkH9sixZph-7pgQmWR_A@mail.gmail.com>
 <CAJaJUhNCy1knRBRVx2rkpSjYVDw4W_s+ax8osxArRAWtrvkxsQ@mail.gmail.com>
 <CAJaJUhNVs_GzOEfG7HCo_tH5AJbbWB4SDqWEHPMiEtsfbfLXjQ@mail.gmail.com>
 <CAKKNfuLy9ZeTuwKV21MAD49_16xfMKeDDP5Y=dQr=u0ndQ3iEw@mail.gmail.com>
 <CALzTN-Szuw_-M+G0Yfy-XzfJQK-Pyg7dkzNuzC9cRMbYAA4egA@mail.gmail.com>
Message-ID: <CAJaJUhOGKWaVP-W55jVYjtXqNfVUcDb3XnRBHtNjAgnZ=AZGaQ@mail.gmail.com>

Dear all,

thanks for the continuous support.

I am gonna try with the BinShrinkImageFilter.

By the way, I guess that I am overlooking something in double to float code
conversion. In fact, I have made this change on the ITK ImageRegistration1
example obtaining the same memory results.
I am on Windows 7, 64 bit, Visual Studio Express 12 (2013), ITK built in
release mode with MT flags. I will be pleased if you could give a look at
this piece of code.

I have attached at this mail:
ImageRegistration1Double: exactly the same as ImageRegistration1, with
MemoryProbe added;
ImageRegistration1Float: MemoryProbe added and changed double to float in
registration blocks;
BrainProton.....png a pair of test images;
Results....png a screenshot of the results in both cases.

Have a nice day,

Luigi




2015-11-18 22:50 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:

> Hi Luigi,
>
> It may be prudent to downsample the images using something like the
> BinShrinkImageFilter.  Often, the full-resolution is overkill for the
> registration task.
>
> HTH,
> Matt
>
> On Wed, Nov 18, 2015 at 1:21 PM, Matias Montroull <matimontg at gmail.com>
> wrote:
> > Luigi, I assume you are workimg on release mode right?
> > Would you be able to send the cpp file that you are compiling to test?
> >
> > Matias
> >
> > On Nov 18, 2015 7:53 AM, "Luigi Riba" <ribaluigi at gmail.com> wrote:
> >>
> >> Dear all,
> >>
> >> I have tried your suggestions and I have simplified my code.
> >> Unfortunately, I still have some issues:
> >>
> >> 1. I cannot read the two images as unsigned short. If I do like this,
> >> VisualStudio compiler returns:
> >>  Error 2 error C2440: 'initializing' : cannot convert from
> >> 'itk::Concept::Detail::UniqueType_bool<false>' to
> >> 'itk::Concept::Detail::UniqueType_bool<true>'
> >> f:\libs\itk\modules\core\common\include\itkConceptChecking.h 796 1
> affine3d
> >>
> >> 2. I have decided to read the images directly in float;
> >>
> >> 3. I have set everything to float but I have noticed no memory usage
> >> differences between the "dobule" and "float" code. In particular, I have
> >> set:
> >>>
> >>> typedef float InternalComputationValueType;
> >>> typedef itk::AffineTransform< InternalComputationValueType, Dimension>
> >>> TransformType;
> >>> typedef
> >>>
> itk::RegularStepGradientDescentOptimizerv4<InternalComputationValueType>
> >>> OptimizerType;
> >>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType, ImageType,
> >>> ImageType, InternalComputationValueType>  MetricType;
> >>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
> >>> TransformType> RegistrationType;
> >>> typedef float CoordinateType;
> >>> typedef itk::LinearInterpolateImageFunction<ImageType, CoordinateType>
> >>> InterpolationType;
> >>
> >>
> >> RECAP:
> >> 1. I would like to reduce the memory usage of my registration code. In
> >> fact, I work with unsigned short, i.e. 16 bit grayscale images, ~1Gb
> each
> >> and memory usage gets high pretty soon (750MB images -> ~30GB total
> memory
> >> usage)
> >> 2. It has been suggested to set the algorithm to work with float instead
> >> of double;
> >> 3. How can I accomplish point 2.?
> >> 4. Is point 2. the only viable solution in order to reduce memory usage?
> >> 5  Is there a way to have a finer monitoring of memory usage. For the
> >> moment I am using itkMemoryProbe which just gives me the total amount of
> >> used memory.
> >>
> >> Thank you for your kind support,
> >> Luigi
> >>
> >>
> >> 2015-11-16 16:55 GMT+01:00 Luigi Riba <ribaluigi at gmail.com>:
> >>>
> >>> Dear D?enan and Matias,
> >>>
> >>> thank you very much for the help.
> >>>
> >>> I'll test your suggestion and I'll post back the results for the
> >>> community.
> >>>
> >>> Best,
> >>>
> >>> Luigi
> >>>
> >>> 2015-11-16 16:53 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
> >>>>
> >>>> That was my assumption Luigi
> >>>>
> >>>> El lun., 16 de nov. de 2015 a la(s) 12:30 p. m., D?enan Zuki?
> >>>> <dzenanz at gmail.com> escribi?:
> >>>>>
> >>>>> I believe Matias thought that your original pixel type was signed
> >>>>> short.
> >>>>>
> >>>>> So just use the images you read as unsigned short (set them as input
> to
> >>>>> the registration), and don't make another copy of the images by
> casting them
> >>>>> to float.
> >>>>>
> >>>>> HTH
> >>>>>
> >>>>> On Mon, Nov 16, 2015 at 10:17 AM, Luigi Riba <ribaluigi at gmail.com>
> >>>>> wrote:
> >>>>>>
> >>>>>> Dear Matias,
> >>>>>>
> >>>>>> thank you very much for your quick reply.
> >>>>>>
> >>>>>> Unfortunately, I didn't have time yet to test it. Anyhow, could you
> >>>>>> please tell me the rationale behind it?
> >>>>>>
> >>>>>> In my code:
> >>>>>>
> >>>>>> I read two grayscale 16 bit .mhd images. To read them I define the
> >>>>>> IOPixelTyep as unsigned short;
> >>>>>> I cast them to the "operational" type called PixelType as float
> >>>>>> I define all the registration objects templated on float.
> >>>>>>
> >>>>>> Why should I cast my images to PixelType == signed short?
> >>>>>>
> >>>>>> Thanks in advance for the support,
> >>>>>> Luigi
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> 2015-11-10 15:45 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
> >>>>>>>
> >>>>>>> try this:
> >>>>>>> typedef  signed short  PixelType;
> >>>>>>>
> >>>>>>>
> >>>>>>> El mar., 10 de nov. de 2015 a la(s) 11:36 a. m., Luigi Riba
> >>>>>>> <ribaluigi at gmail.com> escribi?:
> >>>>>>>>
> >>>>>>>> Dear Matt,
> >>>>>>>>
> >>>>>>>> I have tried following your suggestion but, unfortunately, it
> didn't
> >>>>>>>> work out.
> >>>>>>>>
> >>>>>>>> In particular:
> >>>>>>>>
> >>>>>>>> I read a pair of uint16 images;
> >>>>>>>> I cast them to float pixel type via the CastImageFilter;
> >>>>>>>> I change the TInternalComputationValueType for the metric, the
> >>>>>>>> optimizer, the transform and the registration doing something
> like:
> >>>>>>>>>
> >>>>>>>>> const unsigned int Dimension = 3;
> >>>>>>>>>
> >>>>>>>>> typedef float PixelType;
> >>>>>>>>>
> >>>>>>>>> typedef unsigned short IOPixelType;
> >>>>>>>>>
> >>>>>>>>> typedef itk::Image<IOPixelType, Dimension> IOImageType;
> >>>>>>>>>
> >>>>>>>>> typedef itk::Image<PixelType, Dimension> ImageType;
> >>>>>>>>>
> >>>>>>>>> typedef itk::AffineTransform<float, Dimension > TransformType;
> >>>>>>>>>
> >>>>>>>>> typedef itk::RegularStepGradientDescentOptimizerv4<float>
> >>>>>>>>> OptimizerType;
> >>>>>>>>>
> >>>>>>>>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType,
> >>>>>>>>> ImageType,ImageType,float> MetricType;
> >>>>>>>>>
> >>>>>>>>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
> >>>>>>>>> TransformType> RegistrationType;
> >>>>>>>>>
> >>>>>>>>> typedef itk::ResampleImageFilter<IOImageType, IOImageType,
> >>>>>>>>> float,float> ResampleFilterType;
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>> I have put one memory probe before the registration procedure and
> >>>>>>>> one afterwards of it. In the "double" case and in the "float"
> case I've seen
> >>>>>>>> the same memory consumption.
> >>>>>>>>
> >>>>>>>> Am I missing something? Are there other things I should change in
> my
> >>>>>>>> code?
> >>>>>>>>
> >>>>>>>> Thanks again for the support,
> >>>>>>>> Luigi
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>> 2015-11-09 17:23 GMT+01:00 Matt McCormick
> >>>>>>>> <matt.mccormick at kitware.com>:
> >>>>>>>>>
> >>>>>>>>> Hi Luigi,
> >>>>>>>>>
> >>>>>>>>> The type of optimizer should not have too large of an impact on
> >>>>>>>>> memory
> >>>>>>>>> consumption.  Using a gradient-free optimizer may help slightly,
> >>>>>>>>> but
> >>>>>>>>> try changing the pixel type of the input images or, if possible,
> >>>>>>>>> the
> >>>>>>>>> parameter type of the transformation, from double to float.
> >>>>>>>>>
> >>>>>>>>> HTH,
> >>>>>>>>> Matt
> >>>>>>>>>
> >>>>>>>>> On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <ribaluigi at gmail.com
> >
> >>>>>>>>> wrote:
> >>>>>>>>> > Dear all,
> >>>>>>>>> >
> >>>>>>>>> > I am registering a couple of volumes with ITK 4 on windows 7 64
> >>>>>>>>> > bit.
> >>>>>>>>> >
> >>>>>>>>> > I wrote a code based on the affine transformation, with the
> mean
> >>>>>>>>> > square
> >>>>>>>>> > error metric and the RegularStepGradientDescentOptimizerv4.
> >>>>>>>>> > Unfortunately,
> >>>>>>>>> > the memory usage is pretty high.
> >>>>>>>>> >
> >>>>>>>>> > I have checked memory consumption with the itkMemoryProbe and,
> >>>>>>>>> > after looking
> >>>>>>>>> > around on previous mailing list messages I have decided to try
> >>>>>>>>> > with a
> >>>>>>>>> > gradient free optimizer like the Nelder-Mead one.
> >>>>>>>>> >
> >>>>>>>>> > So I have rewrote the code using the AmoebaOptimizerV4 and I
> have
> >>>>>>>>> > continued
> >>>>>>>>> > monitoring the memory consumption via MemoryProbe.
> Unfortunately,
> >>>>>>>>> > it seems
> >>>>>>>>> > that nothing has changed. Is this working as expected? If this
> is
> >>>>>>>>> > the case,
> >>>>>>>>> > do you have any suggestion to gave me in order to reduce the
> >>>>>>>>> > memory
> >>>>>>>>> > consumption of the code?
> >>>>>>>>> >
> >>>>>>>>> > Thanks in advance for the help.
> >>>>>>>>> >
> >>>>>>>>> > Best,
> >>>>>>>>> >
> >>>>>>>>> > Luigi
> >>>>>>>>> >
> >>>>>>>>> > _______________________________________________
> >>>>>>>>> > Community mailing list
> >>>>>>>>> > Community at itk.org
> >>>>>>>>> > http://public.kitware.com/mailman/listinfo/community
> >>>>>>>>> >
> >>>>>>>>
> >>>>>>>> _______________________________________________
> >>>>>>>> Community mailing list
> >>>>>>>> Community at itk.org
> >>>>>>>> http://public.kitware.com/mailman/listinfo/community
> >>>>>>>
> >>>>>>> --
> >>>>>>> Matias
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> _______________________________________________
> >>>>>> Community mailing list
> >>>>>> Community at itk.org
> >>>>>> http://public.kitware.com/mailman/listinfo/community
> >>>>>>
> >>>>>
> >>>> --
> >>>> Matias
> >>>
> >>>
> >>
> >
> > _______________________________________________
> > Community mailing list
> > Community at itk.org
> > http://public.kitware.com/mailman/listinfo/community
> >
>
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From osubachev at gmail.com  Thu Nov 19 06:21:06 2015
From: osubachev at gmail.com (Oleg Subachev)
Date: Thu, 19 Nov 2015 16:21:06 +0500
Subject: [ITK] How to get to get image similarity metrics under .NET ?
In-Reply-To: <CAPNvZ5YbeN2RtkOYCDz_pK0GVhStXNDQa4mMZ4JueKGOazgc9w@mail.gmail.com>
References: <CAD0V+a2fhGDFbCg8wHC9+NZi8rda278_nhc2ETkTAXQZEQ5JXw@mail.gmail.com>
 <D885E0B0-F39F-4076-986E-A48115E8BD21@mail.nih.gov>
 <CAD0V+a0hWFRsvctcV0TPbBPaAZzQvhJhYyhr-+2w6OTMdvctEQ@mail.gmail.com>
 <D271FDCB.66B3%yanivz@mail.nih.gov>
 <CAD0V+a2MTa=owoZADTXy60KRifrVh57FVc_aq2ofe8qxvxk6ig@mail.gmail.com>
 <CAPNvZ5YbeN2RtkOYCDz_pK0GVhStXNDQa4mMZ4JueKGOazgc9w@mail.gmail.com>
Message-ID: <CAD0V+a2oVm5EjcUL453aEORfaaEDm8pscdNEgEE71E1sHPBs8Q@mail.gmail.com>

Hello Dan:

1.png and 2.png are of exactly the same size: 397 x 959 pixels of 24 bit color.

--
Best regards,
Oleg Subachev

On Thu, Nov 19, 2015 at 1:14 PM, Dan Mueller <dan.muel at gmail.com> wrote:
> Hi,
>
> The error message seems to suggest 1.PNG and 2.PNG are differing sizes.
> Perhaps you could crop one of the images so they are equal sizes...
>
> Good luck, Dan
>
> On 19 Nov 2015 5:32 pm, "Oleg Subachev" <osubachev at gmail.com> wrote:
>>
>> Thanks all of you.
>> But now the code:
>> using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
>> {
>> method.SetMetricAsMattesMutualInformation();
>> double metric = method.MetricEvaluate(
>> SimpleITK.ReadImage( "1.png", PixelIDValueEnum.sitkFloat32
>> ),SimpleITK.ReadImage( "2.png", PixelIDValueEnum.sitkFloat32 ));
>> }
>>
>> throws new exception:
>> {"Exception thrown in SimpleITK
>> ImageRegistrationMethod_MetricEvaluate:
>>
>> ..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegistrationMethod.cxx:922:\nsitk::ERROR:
>> Unexpected error converting initial transform! Possible miss matching
>> dimensions!"}
>>
>> --
>> Best regards,
>> Oleg Subachev
>>
>>
>> On Wed, Nov 18, 2015 at 8:14 PM, Yaniv, Ziv Rafael (NIH/NLM/LHC) [C]
>> <zivrafael.yaniv at nih.gov> wrote:
>> > Hello Oleg,
>> >
>> > The ImageRegistrationMethod only supports images with pixel type
>> > sitkFloat32 and sitkFloat64. You can either specify the pixel type when
>> > reading the image
>> >
>> > (http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#a02ff
>> > c30c3c55dd9eeff3f76ba19f35e7) or read the image with its native pixel
>> > type
>> > and then
>> > use the SimpleITK Cast function
>> >
>> > (http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#af8c9
>> > d7cc96a299a05890e9c3db911885), casting it to either of these two types.
>> >
>> >    Ziv
>> >
>> >
>> >
>> > On 11/18/15, 9:51 AM, "Oleg Subachev" <osubachev at gmail.com> wrote:
>> >
>> >>Thanks, Brad.
>> >>
>> >>But when I try this code:
>> >>using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
>> >>{
>> >>method.SetMetricAsMattesMutualInformation( 50 );
>> >>double metric = method.MetricEvaluate( SimpleITK.ReadImage( "1.png" ),
>> >>SimpleITK.ReadImage( "2.png" ) );
>> >>}
>> >>
>> >>I get the exception:
>> >>{"Exception thrown in SimpleITK
>> >>ImageRegistrationMethod_MetricEvaluate:
>>
>> >> >>..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegistrat
>> >>ionMethod.cxx:862:\nsitk::ERROR:
>> >>Filter does not support fixed image type: vector of 8-bit unsigned
>> >>integer"}
>> >>
>> >>What's wrong ?
>> >>What is the simplest way to get similarity value of two image files ?
>> >>
>> >>--
>> >>Best regards,
>> >>Oleg Subachev
>> >>
>> >>On Tue, Nov 17, 2015 at 6:41 PM, Bradley Lowekamp
>> >><blowekamp at mail.nih.gov> wrote:
>> >>> Hello,
>> >>>
>> >>> You should look into SimpleITK's
>> >>>ImageRegistrationMethod::MetricEvaluate( Image, Image ) member
>> >>> function.
>> >>>
>> >>> Here is a Python example of using the method, C# should be similar:
>> >>>
>> >>>
>>
>> >>> >>>http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/63_Registr
>> >>>ation_Initialization.html
>> >>>
>> >>> HTH,
>> >>> Brad
>> >>>
>> >>> On Nov 17, 2015, at 8:24 AM, Oleg Subachev <osubachev at gmail.com>
>> >>> wrote:
>> >>>
>> >>>> I need to get similarity metrics for 2D images under .NET.
>> >>>> According to ITK documentation
>> >>>> (http://www.itk.org/Doxygen/html/ImageSimilarityMetricsPage.html)
>> >>>> there are several Image To Image metrics available.
>> >>>> ITK itself contains corresponding methods.
>> >>>> But I cannot find those methods in SimpleITK :-(
>> >>>> There is SimpleITK.NormalizedCorrelation(Image, Image, Image) method,
>> >>>> but it seems to have nothing with similarity metrics.
>> >>>>
>> >>>> How to get to get image similarity metrics under .NET ?
>> >>>>
>> >>>> --
>> >>>> Best regards,
>> >>>>
>> >>>> Oleg Subachev
>> >>>> _______________________________________________
>> >>>> Community mailing list
>> >>>> Community at itk.org
>> >>>> http://public.kitware.com/mailman/listinfo/community
>> >>>
>> >>_______________________________________________
>> >>Community mailing list
>> >>Community at itk.org
>> >>http://public.kitware.com/mailman/listinfo/community
>> >
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community

From osubachev at gmail.com  Thu Nov 19 06:57:54 2015
From: osubachev at gmail.com (Oleg Subachev)
Date: Thu, 19 Nov 2015 16:57:54 +0500
Subject: [ITK] How to get to get image similarity metrics under .NET ?
In-Reply-To: <CAD0V+a2MTa=owoZADTXy60KRifrVh57FVc_aq2ofe8qxvxk6ig@mail.gmail.com>
References: <CAD0V+a2fhGDFbCg8wHC9+NZi8rda278_nhc2ETkTAXQZEQ5JXw@mail.gmail.com>
 <D885E0B0-F39F-4076-986E-A48115E8BD21@mail.nih.gov>
 <CAD0V+a0hWFRsvctcV0TPbBPaAZzQvhJhYyhr-+2w6OTMdvctEQ@mail.gmail.com>
 <D271FDCB.66B3%yanivz@mail.nih.gov>
 <CAD0V+a2MTa=owoZADTXy60KRifrVh57FVc_aq2ofe8qxvxk6ig@mail.gmail.com>
Message-ID: <CAD0V+a1VLdf+DSx86xi61UW-zYvto3rbX4JHr3HSiG8OEeFLuQ@mail.gmail.com>

Since error message says something about "initial transform" may be it
is necessary to set up initial transform ?
As you see from code I do not call SetInitialTransform method at all.
I hope that no initial transform or default initial transform (if any)
will be enough.
I simply want to get similarity metric value for two image files
without any transform.

-- 
Best regards,
Oleg Subachev

On Thu, Nov 19, 2015 at 12:01 PM, Oleg Subachev <osubachev at gmail.com> wrote:
> Thanks all of you.
> But now the code:
> using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
> {
> method.SetMetricAsMattesMutualInformation();
> double metric = method.MetricEvaluate(
> SimpleITK.ReadImage( "1.png", PixelIDValueEnum.sitkFloat32
> ),SimpleITK.ReadImage( "2.png", PixelIDValueEnum.sitkFloat32 ));
> }
>
> throws new exception:
> {"Exception thrown in SimpleITK
> ImageRegistrationMethod_MetricEvaluate:
> ..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegistrationMethod.cxx:922:\nsitk::ERROR:
> Unexpected error converting initial transform! Possible miss matching
> dimensions!"}
>
> --
> Best regards,
> Oleg Subachev
>
>
> On Wed, Nov 18, 2015 at 8:14 PM, Yaniv, Ziv Rafael (NIH/NLM/LHC) [C]
> <zivrafael.yaniv at nih.gov> wrote:
>> Hello Oleg,
>>
>> The ImageRegistrationMethod only supports images with pixel type
>> sitkFloat32 and sitkFloat64. You can either specify the pixel type when
>> reading the image
>> (http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#a02ff
>> c30c3c55dd9eeff3f76ba19f35e7) or read the image with its native pixel type
>> and then
>> use the SimpleITK Cast function
>> (http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#af8c9
>> d7cc96a299a05890e9c3db911885), casting it to either of these two types.
>>
>>    Ziv
>>
>>
>>
>> On 11/18/15, 9:51 AM, "Oleg Subachev" <osubachev at gmail.com> wrote:
>>
>>>Thanks, Brad.
>>>
>>>But when I try this code:
>>>using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
>>>{
>>>method.SetMetricAsMattesMutualInformation( 50 );
>>>double metric = method.MetricEvaluate( SimpleITK.ReadImage( "1.png" ),
>>>SimpleITK.ReadImage( "2.png" ) );
>>>}
>>>
>>>I get the exception:
>>>{"Exception thrown in SimpleITK
>>>ImageRegistrationMethod_MetricEvaluate:
>>>..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegistrat
>>>ionMethod.cxx:862:\nsitk::ERROR:
>>>Filter does not support fixed image type: vector of 8-bit unsigned
>>>integer"}
>>>
>>>What's wrong ?
>>>What is the simplest way to get similarity value of two image files ?
>>>
>>>--
>>>Best regards,
>>>Oleg Subachev
>>>
>>>On Tue, Nov 17, 2015 at 6:41 PM, Bradley Lowekamp
>>><blowekamp at mail.nih.gov> wrote:
>>>> Hello,
>>>>
>>>> You should look into SimpleITK's
>>>>ImageRegistrationMethod::MetricEvaluate( Image, Image ) member function.
>>>>
>>>> Here is a Python example of using the method, C# should be similar:
>>>>
>>>>
>>>>http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/63_Registr
>>>>ation_Initialization.html
>>>>
>>>> HTH,
>>>> Brad
>>>>
>>>> On Nov 17, 2015, at 8:24 AM, Oleg Subachev <osubachev at gmail.com> wrote:
>>>>
>>>>> I need to get similarity metrics for 2D images under .NET.
>>>>> According to ITK documentation
>>>>> (http://www.itk.org/Doxygen/html/ImageSimilarityMetricsPage.html)
>>>>> there are several Image To Image metrics available.
>>>>> ITK itself contains corresponding methods.
>>>>> But I cannot find those methods in SimpleITK :-(
>>>>> There is SimpleITK.NormalizedCorrelation(Image, Image, Image) method,
>>>>> but it seems to have nothing with similarity metrics.
>>>>>
>>>>> How to get to get image similarity metrics under .NET ?
>>>>>
>>>>> --
>>>>> Best regards,
>>>>>
>>>>> Oleg Subachev
>>>>> _______________________________________________
>>>>> Community mailing list
>>>>> Community at itk.org
>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>
>>>_______________________________________________
>>>Community mailing list
>>>Community at itk.org
>>>http://public.kitware.com/mailman/listinfo/community
>>

From zivrafael.yaniv at nih.gov  Thu Nov 19 09:49:20 2015
From: zivrafael.yaniv at nih.gov (Yaniv, Ziv Rafael (NIH/NLM/LHC) [C])
Date: Thu, 19 Nov 2015 14:49:20 +0000
Subject: [ITK] How to get to get image similarity metrics under .NET ?
In-Reply-To: <CAD0V+a1VLdf+DSx86xi61UW-zYvto3rbX4JHr3HSiG8OEeFLuQ@mail.gmail.com>
References: <CAD0V+a2fhGDFbCg8wHC9+NZi8rda278_nhc2ETkTAXQZEQ5JXw@mail.gmail.com>
 <D885E0B0-F39F-4076-986E-A48115E8BD21@mail.nih.gov>
 <CAD0V+a0hWFRsvctcV0TPbBPaAZzQvhJhYyhr-+2w6OTMdvctEQ@mail.gmail.com>
 <D271FDCB.66B3%yanivz@mail.nih.gov>
 <CAD0V+a2MTa=owoZADTXy60KRifrVh57FVc_aq2ofe8qxvxk6ig@mail.gmail.com>
 <CAD0V+a1VLdf+DSx86xi61UW-zYvto3rbX4JHr3HSiG8OEeFLuQ@mail.gmail.com>
Message-ID: <D2734927.6777%yanivz@mail.nih.gov>

Hello Oleg,

It is necessary to set the initial transform as the MetricEvaluate method
will use that transformation to evaluate your similarity metric, the same
way it is done during registration. There is always a transformation
between the two images, even if it is the identity. Something like
method.SetInitialTransform(new Euler3DTransform()) if your images are 3D
or Euler2DTransform() if they are 2D. In your case the you can use any of
the transformation types Translation,Affine? as you are creating the
identity transform.

   Ziv



On 11/19/15, 6:57 AM, "Oleg Subachev" <osubachev at gmail.com> wrote:

>Since error message says something about "initial transform" may be it
>is necessary to set up initial transform ?
>As you see from code I do not call SetInitialTransform method at all.
>I hope that no initial transform or default initial transform (if any)
>will be enough.
>I simply want to get similarity metric value for two image files
>without any transform.
>
>-- 
>Best regards,
>Oleg Subachev
>
>On Thu, Nov 19, 2015 at 12:01 PM, Oleg Subachev <osubachev at gmail.com>
>wrote:
>> Thanks all of you.
>> But now the code:
>> using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
>> {
>> method.SetMetricAsMattesMutualInformation();
>> double metric = method.MetricEvaluate(
>> SimpleITK.ReadImage( "1.png", PixelIDValueEnum.sitkFloat32
>> ),SimpleITK.ReadImage( "2.png", PixelIDValueEnum.sitkFloat32 ));
>> }
>>
>> throws new exception:
>> {"Exception thrown in SimpleITK
>> ImageRegistrationMethod_MetricEvaluate:
>> 
>>..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegistra
>>tionMethod.cxx:922:\nsitk::ERROR:
>> Unexpected error converting initial transform! Possible miss matching
>> dimensions!"}
>>
>> --
>> Best regards,
>> Oleg Subachev
>>
>>
>> On Wed, Nov 18, 2015 at 8:14 PM, Yaniv, Ziv Rafael (NIH/NLM/LHC) [C]
>> <zivrafael.yaniv at nih.gov> wrote:
>>> Hello Oleg,
>>>
>>> The ImageRegistrationMethod only supports images with pixel type
>>> sitkFloat32 and sitkFloat64. You can either specify the pixel type when
>>> reading the image
>>> 
>>>(http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#a0
>>>2ff
>>> c30c3c55dd9eeff3f76ba19f35e7) or read the image with its native pixel
>>>type
>>> and then
>>> use the SimpleITK Cast function
>>> 
>>>(http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#af
>>>8c9
>>> d7cc96a299a05890e9c3db911885), casting it to either of these two types.
>>>
>>>    Ziv
>>>
>>>
>>>
>>> On 11/18/15, 9:51 AM, "Oleg Subachev" <osubachev at gmail.com> wrote:
>>>
>>>>Thanks, Brad.
>>>>
>>>>But when I try this code:
>>>>using ( ImageRegistrationMethod method = new ImageRegistrationMethod()
>>>>)
>>>>{
>>>>method.SetMetricAsMattesMutualInformation( 50 );
>>>>double metric = method.MetricEvaluate( SimpleITK.ReadImage( "1.png" ),
>>>>SimpleITK.ReadImage( "2.png" ) );
>>>>}
>>>>
>>>>I get the exception:
>>>>{"Exception thrown in SimpleITK
>>>>ImageRegistrationMethod_MetricEvaluate:
>>>>..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegist
>>>>rat
>>>>ionMethod.cxx:862:\nsitk::ERROR:
>>>>Filter does not support fixed image type: vector of 8-bit unsigned
>>>>integer"}
>>>>
>>>>What's wrong ?
>>>>What is the simplest way to get similarity value of two image files ?
>>>>
>>>>--
>>>>Best regards,
>>>>Oleg Subachev
>>>>
>>>>On Tue, Nov 17, 2015 at 6:41 PM, Bradley Lowekamp
>>>><blowekamp at mail.nih.gov> wrote:
>>>>> Hello,
>>>>>
>>>>> You should look into SimpleITK's
>>>>>ImageRegistrationMethod::MetricEvaluate( Image, Image ) member
>>>>>function.
>>>>>
>>>>> Here is a Python example of using the method, C# should be similar:
>>>>>
>>>>>
>>>>>http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/63_Regi
>>>>>str
>>>>>ation_Initialization.html
>>>>>
>>>>> HTH,
>>>>> Brad
>>>>>
>>>>> On Nov 17, 2015, at 8:24 AM, Oleg Subachev <osubachev at gmail.com>
>>>>>wrote:
>>>>>
>>>>>> I need to get similarity metrics for 2D images under .NET.
>>>>>> According to ITK documentation
>>>>>> (http://www.itk.org/Doxygen/html/ImageSimilarityMetricsPage.html)
>>>>>> there are several Image To Image metrics available.
>>>>>> ITK itself contains corresponding methods.
>>>>>> But I cannot find those methods in SimpleITK :-(
>>>>>> There is SimpleITK.NormalizedCorrelation(Image, Image, Image)
>>>>>>method,
>>>>>> but it seems to have nothing with similarity metrics.
>>>>>>
>>>>>> How to get to get image similarity metrics under .NET ?
>>>>>>
>>>>>> --
>>>>>> Best regards,
>>>>>>
>>>>>> Oleg Subachev
>>>>>> _______________________________________________
>>>>>> Community mailing list
>>>>>> Community at itk.org
>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>
>>>>_______________________________________________
>>>>Community mailing list
>>>>Community at itk.org
>>>>http://public.kitware.com/mailman/listinfo/community
>>>
>_______________________________________________
>Community mailing list
>Community at itk.org
>http://public.kitware.com/mailman/listinfo/community


From dzenanz at gmail.com  Thu Nov 19 10:50:52 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Thu, 19 Nov 2015 10:50:52 -0500
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAMeM8yaJ4vn5VYzmTBHpSwoxuBdn7vPTOPoobFF8EiUtuEhsLA@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
 <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
 <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
 <CAPf2UMSN=ff2_pjKepVyd2V3coi_Fw33YwbSosPH+Fyv6hXPJg@mail.gmail.com>
 <CAMeM8ybeAARUD13gbwHv-NK17K2SpXNmJ2xYH-6_WbjVVaD3Jg@mail.gmail.com>
 <CAPf2UMQ6uAwmqzDNkHiGS7znisbZbFrZY-6cC9L+CU2cjBFZDw@mail.gmail.com>
 <CAMeM8yax+Z1bsjdw=ic6VHhvkfD4W5cwvBAppyBqmkixuj9xdg@mail.gmail.com>
 <CAPf2UMSL4ho2p6RzFY52VMqKLsH0Ub6XSR7LFML0ekQ94ZJ+gg@mail.gmail.com>
 <CAMeM8yZxdtbng1Rf8s5f8NW8eTsFcfYXeVcvb0XEsH8R8fEdPw@mail.gmail.com>
 <CAPf2UMSohLPbhfGYZFQRxbqqxuOhKADLeKcvRT0kLMtdBFGv_Q@mail.gmail.com>
 <CAMeM8yavGrm0aydmNZrA8y4dar7sXhZJOjfQx58muLsXp5W3rQ@mail.gmail.com>
 <CAMeM8yaJ4vn5VYzmTBHpSwoxuBdn7vPTOPoobFF8EiUtuEhsLA@mail.gmail.com>
Message-ID: <CAPf2UMTA1M-tLKL_LHd7h62RGR7G+-y0NvWaJ-hXED_b7oGKAg@mail.gmail.com>

The documentation page clearly indicates that those are old materials:
"*Presentations
used for tutorials presented in conferences such as IEEE Visualization 2002
and 2003, MICCAI 2003 and SPIE Medical Imaging 2003 and 2004.*" Is it
really surprising that there are some discrepancies such as static
libraries being built by default instead of dynamic ones (which do get put
in bin folder)?

Anyway, the current goto references are the doxygen docs
<http://www.itk.org/Doxygen/html/>, the software guide
<http://www.itk.org/ItkSoftwareGuide.pdf> and examples wiki
<http://itk.org/Wiki/ITK/Examples>. The old tutorials are there as
additional documentation.

Regards,
D?enan

On Thu, Nov 19, 2015 at 2:14 AM, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
wrote:

> The presentation that I have attached can be found on the first website
> cited in your e-mail:
>
> http://www.itk.org/CourseWare/Training/GettingStarted-I.pdf
>
> The reason I am making this point is because one week ago I was getting
> those results, and now I am not. I do not believe that the software has
> changed so fast. So I am wondering what am I doing wrong.
>
> Many thanks.
>
>
>
>
> On 19 November 2015 at 07:50, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
> wrote:
>
>> Many thanks.
>>
>> On 18 November 2015 at 20:24, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> That is some old presentation (from 2007). Where did you find it? Things
>>> have changed since then.
>>>
>>> The current documentation is indexed here:
>>> http://www.itk.org/ITK/help/documentation.html
>>> Especially the software guide: http://www.itk.org/ItkSoftwareGuide.pdf
>>>
>>> Regards
>>>
>>> On Wed, Nov 18, 2015 at 1:34 PM, T?nde Szil?gyi <
>>> a.tunde.szilagyi at gmail.com> wrote:
>>>
>>>> Why is this information different from the one in the official
>>>> (attached) tutorial, slide 27-28? Many thanks.
>>>>
>>>> On 18 November 2015 at 19:15, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>
>>>>> ITK is largely a template library, which means it does not have a lot
>>>>> of DLLs. Including headers is mostly sufficient. Also, ~/ITK_bin/*lib*/Debug/
>>>>> should contain library files, *NOT* ~/ITK_bin/*bin*/Debug/.
>>>>>
>>>>> It looks like you have successfully built ITK. Now you can configure
>>>>> projects which require ITK by pointing them (setting ITK_DIR variable) to
>>>>> *~/ITK_bin/*.
>>>>>
>>>>> The simplest possible CMake configuration file for a program using ITK
>>>>> is attached. You just need to provide C++ code (tester.cpp). It could be
>>>>> one of the Wiki examples <http://itk.org/Wiki/ITK/Examples>. Then
>>>>> configure it with CMake, and build it using the same generator as ITK
>>>>> (VS2015 x64).
>>>>>
>>>>> HTH
>>>>>
>>>>> On Wed, Nov 18, 2015 at 12:25 PM, T?nde Szil?gyi <
>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>
>>>>>> Hi D?enan,
>>>>>>
>>>>>> Many thanks - there was a different patch that needed to be applied.
>>>>>> See the description in the attached document. I summarize things below.
>>>>>>
>>>>>> System: Windows 10 64bit OS
>>>>>>
>>>>>> In summary:
>>>>>> - re-installed Git [master] + patch that solved the errors
>>>>>> - re-installed CMake
>>>>>> - Configured and Generated Project in CMake (NO errors)
>>>>>> - BUILD-ALL in VS 14 2015 (NO error message)
>>>>>>
>>>>>> Result:
>>>>>> - the .../ITK_bin/bin/Debug does not contain the expected
>>>>>> folders/files:
>>>>>> ITKCommon, ITKBasicFilters, ITKAlgorithms, ITKNumerics, ITKFEM,
>>>>>> ITKIO, ITKStatistics, ITKMetalIO, itkpng, itkzlib.
>>>>>> - there is no Release folder in .../ITK_bin/bin/
>>>>>>
>>>>>> Each and every step is detailed and illustrated in the attached
>>>>>> documents:
>>>>>>
>>>>>> 1. ITK_TOOLKIT_compilation_18112015.pdf (The end of this file
>>>>>> contains a snapshot of the folders mentioned by You above.)
>>>>>> 2. CMakeCache.txt
>>>>>> 3. VS 14 2015 output: VS_14_2015_OUTPUT_18112015.pdf
>>>>>>
>>>>>> I would welcome your insights. Many thanks in advance.
>>>>>>
>>>>>> --
>>>>>> Tunde
>>>>>>
>>>>>> On 18 November 2015 at 15:45, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>>
>>>>>>> Since static libraries are built by default, ~/ITK_bin/bin/Debug/
>>>>>>> contains only 3 exe files on my machine (and no DLLs).
>>>>>>> However ~/ITK_bin/lib/Debug/ should contain a bunch of .lib files. If it is
>>>>>>> so, you have successfully built ITK in debug mode.
>>>>>>>
>>>>>>> Regarding that patch, you should not have to apply it, it should be
>>>>>>> included. What is the latest commit in the commit log of ITK? Mine is this:
>>>>>>>
>>>>>>> Revision: d248d5f52ad66b19346cab3e8336715a3a628980
>>>>>>> Author: Hyun Jae Kang <hyunjae.kang at kitware.com>
>>>>>>> Date: 2015-11-17 08:24:57
>>>>>>> Message:
>>>>>>> Merge topic 'warning-itkResourceProbe'
>>>>>>>
>>>>>>>
>>>>>>> 3d3b908f COMP: Fix data-conversion warning message on
>>>>>>> itkResourceProbe
>>>>>>> ----
>>>>>>> Modified: Modules/Core/Common/include/itkResourceProbe.h
>>>>>>> Modified: Modules/Core/Common/include/itkResourceProbe.hxx
>>>>>>> Modified: CMakeLists.txt
>>>>>>>
>>>>>>>
>>>>>>> On Wed, Nov 18, 2015 at 2:30 AM, T?nde Szil?gyi <
>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>
>>>>>>>> Thank you, I have made the new selection to VS 14 2015 Win64
>>>>>>>> generator in CMake.
>>>>>>>>
>>>>>>>> However, the patch that solved the error messages is:
>>>>>>>>
>>>>>>>> http://review.source.kitware.com/#/c/20272/
>>>>>>>>
>>>>>>>> and NOT:
>>>>>>>>
>>>>>>>> http://review.source.kitware.com/#/c/20154/1
>>>>>>>>
>>>>>>>> I have now no errors during CMake configuration/generation step.
>>>>>>>> The VS 14 2015 build is successful with 335 succeeded, 0 failed, 0 updated.
>>>>>>>>
>>>>>>>> BUT the ~/ITK_bin/bin/Debug/  does not contain the expected
>>>>>>>> directories/files. By expected I mean the ones specified in the
>>>>>>>> ITK_Tutorial:
>>>>>>>>
>>>>>>>> ITKCommon
>>>>>>>> ITKBasicFilters
>>>>>>>> ITKAlgorithms
>>>>>>>> ITKNumerics
>>>>>>>> ITKFEM
>>>>>>>> ITKIO
>>>>>>>> ITKStatistics
>>>>>>>> ITKMetalIO
>>>>>>>> itkpng
>>>>>>>> itkzlib
>>>>>>>>
>>>>>>>> I have attached the CMakeCache.txt and the selection in the
>>>>>>>> configuration stage in CMake.
>>>>>>>>
>>>>>>>> Many thanks in advance.
>>>>>>>>
>>>>>>>>
>>>>>>>> On 18 November 2015 at 04:40, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> What I meant is that the choice of generator should include Win64
>>>>>>>>> in its name, as shown in the attached screenshot. CMake executable is
>>>>>>>>> Win32, that does not matter. Also, I just built ITK in 32 bit mode without
>>>>>>>>> issues, so something else is amiss.
>>>>>>>>>
>>>>>>>>> Can you attach your CMakeCache.txt?
>>>>>>>>>
>>>>>>>>> On Tue, Nov 17, 2015 at 8:12 PM, T?nde Szil?gyi <
>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>
>>>>>>>>>> I have tried without the patch, but I am receiving the same error
>>>>>>>>>> message. My generator is VS 14 2015 (see CMake window on the LHS).
>>>>>>>>>>
>>>>>>>>>> Now, I have cleaned everything and started with a fresh
>>>>>>>>>> installation:
>>>>>>>>>> - Git Bash
>>>>>>>>>> - CMake
>>>>>>>>>> - ITK master
>>>>>>>>>>
>>>>>>>>>> I realized that only Win32 CMake exists on the official website:
>>>>>>>>>> https://cmake.org/download/
>>>>>>>>>>
>>>>>>>>>> Is this what you refer to in your e-mail below? What else would
>>>>>>>>>> you recommend?
>>>>>>>>>>
>>>>>>>>>> Many thanks.
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>>> wrote:
>>>>>>>>>>
>>>>>>>>>>> That patch was merged to master, so you don't need to apply it.
>>>>>>>>>>>
>>>>>>>>>>> I used VS2015 *Win64* as the generator. You seem to be using
>>>>>>>>>>> *Win32*, that might make a difference.
>>>>>>>>>>>
>>>>>>>>>>> I used version 3.3.1, which I installed some time ago. You are
>>>>>>>>>>> using release candidate version - I doubt that is the reason.
>>>>>>>>>>>
>>>>>>>>>>> Can you try a clean clone (git clone git://itk.org/ITK.git),
>>>>>>>>>>> and then building into a clean directory?
>>>>>>>>>>>
>>>>>>>>>>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> During CMake I am getting the attached error message. All the
>>>>>>>>>>>> error messages I receive is with reference to exe files starting with
>>>>>>>>>>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>>>>>>>>>>> this (http://review.source.kitware.com/#/c/20154/1 -
>>>>>>>>>>>> Checkout), but this still results in the same error messages as before. I
>>>>>>>>>>>> have attached one of the error messages that appear during CMake project
>>>>>>>>>>>> configuration.
>>>>>>>>>>>>
>>>>>>>>>>>> Many thanks.
>>>>>>>>>>>>
>>>>>>>>>>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> Master branch from git://itk.org/ITK.git
>>>>>>>>>>>>>
>>>>>>>>>>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>>>
>>>>>>>>>>>>>> Which ITK version did you use?
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com
>>>>>>>>>>>>>> > wrote:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> This configuration compiles fine in debug too.
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <
>>>>>>>>>>>>>>> dzenanz at gmail.com> wrote:
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Hi T?nde,
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> checking out *master* branch and CMake configuration went
>>>>>>>>>>>>>>>> fine. To speed up compile time, I disabled building of examples and
>>>>>>>>>>>>>>>> testing. I also enabled ITK_LEGACY_REMOVE. I did not enable
>>>>>>>>>>>>>>>> Module_ITKVtkGlue.
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Opening the solution file in VS2015 was fairly slow - it
>>>>>>>>>>>>>>>> might have something to do with the fact I just installed it. Building in
>>>>>>>>>>>>>>>> Release x64 finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> Regards,
>>>>>>>>>>>>>>>> D?enan
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> Hi Everyone,
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> I would be interested whether anyone has managed to build
>>>>>>>>>>>>>>>>> the ITK Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> Many thanks.
>>>>>>>>>>>>>>>>> Tunde
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>>> Community mailing list
>>>>>>>>>>>>>>>>> Community at itk.org
>>>>>>>>>>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Tunde
>>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> --
>>>>>>>>>>>> --
>>>>>>>>>>>> Tunde
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> --
>>>>>>>>>> Tunde
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> --
>>>>>>>> Tunde
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> --
>>>>>> Tunde
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> --
>>>> Tunde
>>>>
>>>
>>>
>>
>>
>> --
>> --
>> Tunde
>>
>
>
>
> --
> --
> Tunde
>
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From luc.hermitte at c-s.fr  Thu Nov 19 11:17:58 2015
From: luc.hermitte at c-s.fr (Luc Hermitte)
Date: Thu, 19 Nov 2015 17:17:58 +0100
Subject: [ITK] [ITK-dev] Header clashes with Apple
In-Reply-To: <CADZJ4hNw1WztDtpF+kOjotT1xke-hxVXx2asu8tt5sJPVMiOaQ@mail.gmail.com>
References: <B5511817-E436-4E9F-AB38-D78D3C4EAD02@rogue-research.com>
 <CALzTN-TKKKHr30nPwq4J5kEhc=qnWuFmkzdwj5ySVqUTwKgRzw@mail.gmail.com>
 <CADZJ4hNw1WztDtpF+kOjotT1xke-hxVXx2asu8tt5sJPVMiOaQ@mail.gmail.com>
Message-ID: <564DF636.7080307@c-s.fr>

Le 18/11/2015 22:28, Bill Lorensen a ?crit :
> I think itkCheck might be better.

Here check() is a function not a macro.
The usual ITK naming convention would require Check, not itkCheck.

The fact some apple code has hijacked check instead of __check or _Check
is a very poor choice. We should not have had any problem with check()
(if we except KWStyle which, oddly, missed it)

Regards,
-- 
Luc Hermitte

> 
> On Wed, Nov 18, 2015 at 4:26 PM, Matt McCormick
> <matt.mccormick at kitware.com> wrote:
>> Hi Seun,
>>
>> Thanks for discussing the issue.
>>
>> I think a good name would be "Check".  Could you please submit a patch? [1]
>>
>> Thanks,
>> Matt
>>
>> [1] http://www.itk.org/Wiki/ITK/Git/Develop
>>
>>
>> On Wed, Nov 18, 2015 at 4:08 PM, Seun Odutola <seun at rogue-research.com> wrote:
>>> Hi Everyone,
>>>
>>>     Just wanted to bring to your attention a problem I faced working on a project using ITK 4.9 on Mac OS X 10.11, Apple declares a macro called 'check?  that takes just a parameter and apparently there is a name clash with a typedef of ITK?s (see itkPromoteType.h).
>>>
>>> // snippet
>>> template <typename TA, typename TB> struct PromoteType
>>> {
>>>   static TA a;
>>>   static TB b;
>>>
>>>   // Aimed at supporting overloads
>>>   template <typename T> static Details::Identity<1>::Type& check(typename Details::SizeToType<1,  TA, TB>::Type, T);
>>>   template <typename T> static Details::Identity<2>::Type& check(typename Details::SizeToType<2,  TA, TB>::Type, T);
>>>
>>>   // Common numeric types
>>>   static Details::Identity<3 >::Type& itkcheck(typename Details::SizeToType<3,  TA, TB>::Type, int);
>>>
>>> // end of snippet
>>>
>>>  I set about trying to fix this issue and on renaming the ?check? in my case I chose ?itkcheck?, rebuilt ITK and ran my project everything worked fine.
>>>
>>> My proposal to the team if indeed I?m right is the above typedef need renaming as we can?t change Apple?s implementation so it?s most likely ITK will need to fix this. Currently renaming the check typedef works fine.
>>> Thanks
>>>
>>> Regards Seun
>>>
>>> p.s: I could submit a patch if that?s fine but I would like to know what name the ITK team would prefer to be substituted for the ?check' typedef above.
>>> _______________________________________________
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://kitware.com/products/protraining.php
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/insight-developers
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
> 
> 
> 

_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From matimontg at gmail.com  Thu Nov 19 11:51:20 2015
From: matimontg at gmail.com (Matias Montroull)
Date: Thu, 19 Nov 2015 16:51:20 +0000
Subject: [ITK] registration - memory concerns
In-Reply-To: <CAJaJUhOGKWaVP-W55jVYjtXqNfVUcDb3XnRBHtNjAgnZ=AZGaQ@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
 <CALzTN-Rw0KOJ4Vsqu9-LJw+POt80X8WWa41JuHEcnFRDqAbaFQ@mail.gmail.com>
 <CAJaJUhNMdRhM4JUvbk2RnbJSbn2CQm2c1q+B+S8VqVNzPh6-qw@mail.gmail.com>
 <CAKKNfuKdPXKPKK2ovrY9pywnJ87DV9Puy+HEHNBoBMTP8ybTGw@mail.gmail.com>
 <CAJaJUhOKpLnmvr-RiO75-k42VmGoRXm5dyX_KsRpADRRPdr3Rw@mail.gmail.com>
 <CAPf2UMRVnvOJrcE0w0Q+ngM2N=JCg1bcZJ65Mxz-g2P-BR5DSA@mail.gmail.com>
 <CAKKNfuLunxE4SPyj9dqhZc_ihX80v_NkH9sixZph-7pgQmWR_A@mail.gmail.com>
 <CAJaJUhNCy1knRBRVx2rkpSjYVDw4W_s+ax8osxArRAWtrvkxsQ@mail.gmail.com>
 <CAJaJUhNVs_GzOEfG7HCo_tH5AJbbWB4SDqWEHPMiEtsfbfLXjQ@mail.gmail.com>
 <CAKKNfuLy9ZeTuwKV21MAD49_16xfMKeDDP5Y=dQr=u0ndQ3iEw@mail.gmail.com>
 <CALzTN-Szuw_-M+G0Yfy-XzfJQK-Pyg7dkzNuzC9cRMbYAA4egA@mail.gmail.com>
 <CAJaJUhOGKWaVP-W55jVYjtXqNfVUcDb3XnRBHtNjAgnZ=AZGaQ@mail.gmail.com>
Message-ID: <CAKKNfuKtamhB1N169aFriPenOQu-g9AGm=WB_MtWxOiGRZq8mA@mail.gmail.com>

I was testing different aproaches and I always get nothing less than 2800,
how many images does the volume have?

El jue., 19 de nov. de 2015 a la(s) 5:47 a. m., Luigi Riba <
ribaluigi at gmail.com> escribi?:

> Dear all,
>
> thanks for the continuous support.
>
> I am gonna try with the BinShrinkImageFilter.
>
> By the way, I guess that I am overlooking something in double to float
> code conversion. In fact, I have made this change on the ITK
> ImageRegistration1 example obtaining the same memory results.
> I am on Windows 7, 64 bit, Visual Studio Express 12 (2013), ITK built in
> release mode with MT flags. I will be pleased if you could give a look at
> this piece of code.
>
> I have attached at this mail:
> ImageRegistration1Double: exactly the same as ImageRegistration1, with
> MemoryProbe added;
> ImageRegistration1Float: MemoryProbe added and changed double to float in
> registration blocks;
> BrainProton.....png a pair of test images;
> Results....png a screenshot of the results in both cases.
>
> Have a nice day,
>
> Luigi
>
>
>
>
> 2015-11-18 22:50 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:
>
>> Hi Luigi,
>>
>> It may be prudent to downsample the images using something like the
>> BinShrinkImageFilter.  Often, the full-resolution is overkill for the
>> registration task.
>>
>> HTH,
>> Matt
>>
>> On Wed, Nov 18, 2015 at 1:21 PM, Matias Montroull <matimontg at gmail.com>
>> wrote:
>> > Luigi, I assume you are workimg on release mode right?
>> > Would you be able to send the cpp file that you are compiling to test?
>> >
>> > Matias
>> >
>> > On Nov 18, 2015 7:53 AM, "Luigi Riba" <ribaluigi at gmail.com> wrote:
>> >>
>> >> Dear all,
>> >>
>> >> I have tried your suggestions and I have simplified my code.
>> >> Unfortunately, I still have some issues:
>> >>
>> >> 1. I cannot read the two images as unsigned short. If I do like this,
>> >> VisualStudio compiler returns:
>> >>  Error 2 error C2440: 'initializing' : cannot convert from
>> >> 'itk::Concept::Detail::UniqueType_bool<false>' to
>> >> 'itk::Concept::Detail::UniqueType_bool<true>'
>> >> f:\libs\itk\modules\core\common\include\itkConceptChecking.h 796 1
>> affine3d
>> >>
>> >> 2. I have decided to read the images directly in float;
>> >>
>> >> 3. I have set everything to float but I have noticed no memory usage
>> >> differences between the "dobule" and "float" code. In particular, I
>> have
>> >> set:
>> >>>
>> >>> typedef float InternalComputationValueType;
>> >>> typedef itk::AffineTransform< InternalComputationValueType, Dimension>
>> >>> TransformType;
>> >>> typedef
>> >>>
>> itk::RegularStepGradientDescentOptimizerv4<InternalComputationValueType>
>> >>> OptimizerType;
>> >>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType, ImageType,
>> >>> ImageType, InternalComputationValueType>  MetricType;
>> >>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>> >>> TransformType> RegistrationType;
>> >>> typedef float CoordinateType;
>> >>> typedef itk::LinearInterpolateImageFunction<ImageType, CoordinateType>
>> >>> InterpolationType;
>> >>
>> >>
>> >> RECAP:
>> >> 1. I would like to reduce the memory usage of my registration code. In
>> >> fact, I work with unsigned short, i.e. 16 bit grayscale images, ~1Gb
>> each
>> >> and memory usage gets high pretty soon (750MB images -> ~30GB total
>> memory
>> >> usage)
>> >> 2. It has been suggested to set the algorithm to work with float
>> instead
>> >> of double;
>> >> 3. How can I accomplish point 2.?
>> >> 4. Is point 2. the only viable solution in order to reduce memory
>> usage?
>> >> 5  Is there a way to have a finer monitoring of memory usage. For the
>> >> moment I am using itkMemoryProbe which just gives me the total amount
>> of
>> >> used memory.
>> >>
>> >> Thank you for your kind support,
>> >> Luigi
>> >>
>> >>
>> >> 2015-11-16 16:55 GMT+01:00 Luigi Riba <ribaluigi at gmail.com>:
>> >>>
>> >>> Dear D?enan and Matias,
>> >>>
>> >>> thank you very much for the help.
>> >>>
>> >>> I'll test your suggestion and I'll post back the results for the
>> >>> community.
>> >>>
>> >>> Best,
>> >>>
>> >>> Luigi
>> >>>
>> >>> 2015-11-16 16:53 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
>> >>>>
>> >>>> That was my assumption Luigi
>> >>>>
>> >>>> El lun., 16 de nov. de 2015 a la(s) 12:30 p. m., D?enan Zuki?
>> >>>> <dzenanz at gmail.com> escribi?:
>> >>>>>
>> >>>>> I believe Matias thought that your original pixel type was signed
>> >>>>> short.
>> >>>>>
>> >>>>> So just use the images you read as unsigned short (set them as
>> input to
>> >>>>> the registration), and don't make another copy of the images by
>> casting them
>> >>>>> to float.
>> >>>>>
>> >>>>> HTH
>> >>>>>
>> >>>>> On Mon, Nov 16, 2015 at 10:17 AM, Luigi Riba <ribaluigi at gmail.com>
>> >>>>> wrote:
>> >>>>>>
>> >>>>>> Dear Matias,
>> >>>>>>
>> >>>>>> thank you very much for your quick reply.
>> >>>>>>
>> >>>>>> Unfortunately, I didn't have time yet to test it. Anyhow, could you
>> >>>>>> please tell me the rationale behind it?
>> >>>>>>
>> >>>>>> In my code:
>> >>>>>>
>> >>>>>> I read two grayscale 16 bit .mhd images. To read them I define the
>> >>>>>> IOPixelTyep as unsigned short;
>> >>>>>> I cast them to the "operational" type called PixelType as float
>> >>>>>> I define all the registration objects templated on float.
>> >>>>>>
>> >>>>>> Why should I cast my images to PixelType == signed short?
>> >>>>>>
>> >>>>>> Thanks in advance for the support,
>> >>>>>> Luigi
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>> 2015-11-10 15:45 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
>> >>>>>>>
>> >>>>>>> try this:
>> >>>>>>> typedef  signed short  PixelType;
>> >>>>>>>
>> >>>>>>>
>> >>>>>>> El mar., 10 de nov. de 2015 a la(s) 11:36 a. m., Luigi Riba
>> >>>>>>> <ribaluigi at gmail.com> escribi?:
>> >>>>>>>>
>> >>>>>>>> Dear Matt,
>> >>>>>>>>
>> >>>>>>>> I have tried following your suggestion but, unfortunately, it
>> didn't
>> >>>>>>>> work out.
>> >>>>>>>>
>> >>>>>>>> In particular:
>> >>>>>>>>
>> >>>>>>>> I read a pair of uint16 images;
>> >>>>>>>> I cast them to float pixel type via the CastImageFilter;
>> >>>>>>>> I change the TInternalComputationValueType for the metric, the
>> >>>>>>>> optimizer, the transform and the registration doing something
>> like:
>> >>>>>>>>>
>> >>>>>>>>> const unsigned int Dimension = 3;
>> >>>>>>>>>
>> >>>>>>>>> typedef float PixelType;
>> >>>>>>>>>
>> >>>>>>>>> typedef unsigned short IOPixelType;
>> >>>>>>>>>
>> >>>>>>>>> typedef itk::Image<IOPixelType, Dimension> IOImageType;
>> >>>>>>>>>
>> >>>>>>>>> typedef itk::Image<PixelType, Dimension> ImageType;
>> >>>>>>>>>
>> >>>>>>>>> typedef itk::AffineTransform<float, Dimension > TransformType;
>> >>>>>>>>>
>> >>>>>>>>> typedef itk::RegularStepGradientDescentOptimizerv4<float>
>> >>>>>>>>> OptimizerType;
>> >>>>>>>>>
>> >>>>>>>>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType,
>> >>>>>>>>> ImageType,ImageType,float> MetricType;
>> >>>>>>>>>
>> >>>>>>>>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>> >>>>>>>>> TransformType> RegistrationType;
>> >>>>>>>>>
>> >>>>>>>>> typedef itk::ResampleImageFilter<IOImageType, IOImageType,
>> >>>>>>>>> float,float> ResampleFilterType;
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>> I have put one memory probe before the registration procedure and
>> >>>>>>>> one afterwards of it. In the "double" case and in the "float"
>> case I've seen
>> >>>>>>>> the same memory consumption.
>> >>>>>>>>
>> >>>>>>>> Am I missing something? Are there other things I should change
>> in my
>> >>>>>>>> code?
>> >>>>>>>>
>> >>>>>>>> Thanks again for the support,
>> >>>>>>>> Luigi
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>> 2015-11-09 17:23 GMT+01:00 Matt McCormick
>> >>>>>>>> <matt.mccormick at kitware.com>:
>> >>>>>>>>>
>> >>>>>>>>> Hi Luigi,
>> >>>>>>>>>
>> >>>>>>>>> The type of optimizer should not have too large of an impact on
>> >>>>>>>>> memory
>> >>>>>>>>> consumption.  Using a gradient-free optimizer may help slightly,
>> >>>>>>>>> but
>> >>>>>>>>> try changing the pixel type of the input images or, if possible,
>> >>>>>>>>> the
>> >>>>>>>>> parameter type of the transformation, from double to float.
>> >>>>>>>>>
>> >>>>>>>>> HTH,
>> >>>>>>>>> Matt
>> >>>>>>>>>
>> >>>>>>>>> On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <
>> ribaluigi at gmail.com>
>> >>>>>>>>> wrote:
>> >>>>>>>>> > Dear all,
>> >>>>>>>>> >
>> >>>>>>>>> > I am registering a couple of volumes with ITK 4 on windows 7
>> 64
>> >>>>>>>>> > bit.
>> >>>>>>>>> >
>> >>>>>>>>> > I wrote a code based on the affine transformation, with the
>> mean
>> >>>>>>>>> > square
>> >>>>>>>>> > error metric and the RegularStepGradientDescentOptimizerv4.
>> >>>>>>>>> > Unfortunately,
>> >>>>>>>>> > the memory usage is pretty high.
>> >>>>>>>>> >
>> >>>>>>>>> > I have checked memory consumption with the itkMemoryProbe and,
>> >>>>>>>>> > after looking
>> >>>>>>>>> > around on previous mailing list messages I have decided to try
>> >>>>>>>>> > with a
>> >>>>>>>>> > gradient free optimizer like the Nelder-Mead one.
>> >>>>>>>>> >
>> >>>>>>>>> > So I have rewrote the code using the AmoebaOptimizerV4 and I
>> have
>> >>>>>>>>> > continued
>> >>>>>>>>> > monitoring the memory consumption via MemoryProbe.
>> Unfortunately,
>> >>>>>>>>> > it seems
>> >>>>>>>>> > that nothing has changed. Is this working as expected? If
>> this is
>> >>>>>>>>> > the case,
>> >>>>>>>>> > do you have any suggestion to gave me in order to reduce the
>> >>>>>>>>> > memory
>> >>>>>>>>> > consumption of the code?
>> >>>>>>>>> >
>> >>>>>>>>> > Thanks in advance for the help.
>> >>>>>>>>> >
>> >>>>>>>>> > Best,
>> >>>>>>>>> >
>> >>>>>>>>> > Luigi
>> >>>>>>>>> >
>> >>>>>>>>> > _______________________________________________
>> >>>>>>>>> > Community mailing list
>> >>>>>>>>> > Community at itk.org
>> >>>>>>>>> > http://public.kitware.com/mailman/listinfo/community
>> >>>>>>>>> >
>> >>>>>>>>
>> >>>>>>>> _______________________________________________
>> >>>>>>>> Community mailing list
>> >>>>>>>> Community at itk.org
>> >>>>>>>> http://public.kitware.com/mailman/listinfo/community
>> >>>>>>>
>> >>>>>>> --
>> >>>>>>> Matias
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>> _______________________________________________
>> >>>>>> Community mailing list
>> >>>>>> Community at itk.org
>> >>>>>> http://public.kitware.com/mailman/listinfo/community
>> >>>>>>
>> >>>>>
>> >>>> --
>> >>>> Matias
>> >>>
>> >>>
>> >>
>> >
>> > _______________________________________________
>> > Community mailing list
>> > Community at itk.org
>> > http://public.kitware.com/mailman/listinfo/community
>> >
>>
>
> --
Matias
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From ribaluigi at gmail.com  Thu Nov 19 16:13:01 2015
From: ribaluigi at gmail.com (Luigi Riba)
Date: Thu, 19 Nov 2015 22:13:01 +0100
Subject: [ITK] registration - memory concerns
In-Reply-To: <CAKKNfuKtamhB1N169aFriPenOQu-g9AGm=WB_MtWxOiGRZq8mA@mail.gmail.com>
References: <CAJaJUhNLum6K33ye2qRJyXBTTWQAYmCA489hsjZvREpAkNn86A@mail.gmail.com>
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Message-ID: <CAJaJUhOXmD40bjn-PTzffJnYXBFcu18ciDrxThwzV_nU2Q9dDA@mail.gmail.com>

Hello Matias,

thanks for the reply and for the tests you have done.

Unfortunately, it seems to be pretty hard to reduce memory consumption.

Anyhow, I have partially avoided the problem following Matt suggestion
about binning and deciding to work on a sub region of the volume itself.
Still it would be interesting to me to better understand memory usage of
itk.

By the way, the kind of volumes I am working with are at least 500x500x500
pixels (16bit) or more.

Have a nice day,

Luigi

2015-11-19 17:51 GMT+01:00 Matias Montroull <matimontg at gmail.com>:

> I was testing different aproaches and I always get nothing less than 2800,
> how many images does the volume have?
>
> El jue., 19 de nov. de 2015 a la(s) 5:47 a. m., Luigi Riba <
> ribaluigi at gmail.com> escribi?:
>
>> Dear all,
>>
>> thanks for the continuous support.
>>
>> I am gonna try with the BinShrinkImageFilter.
>>
>> By the way, I guess that I am overlooking something in double to float
>> code conversion. In fact, I have made this change on the ITK
>> ImageRegistration1 example obtaining the same memory results.
>> I am on Windows 7, 64 bit, Visual Studio Express 12 (2013), ITK built in
>> release mode with MT flags. I will be pleased if you could give a look at
>> this piece of code.
>>
>> I have attached at this mail:
>> ImageRegistration1Double: exactly the same as ImageRegistration1, with
>> MemoryProbe added;
>> ImageRegistration1Float: MemoryProbe added and changed double to float in
>> registration blocks;
>> BrainProton.....png a pair of test images;
>> Results....png a screenshot of the results in both cases.
>>
>> Have a nice day,
>>
>> Luigi
>>
>>
>>
>>
>> 2015-11-18 22:50 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:
>>
>>> Hi Luigi,
>>>
>>> It may be prudent to downsample the images using something like the
>>> BinShrinkImageFilter.  Often, the full-resolution is overkill for the
>>> registration task.
>>>
>>> HTH,
>>> Matt
>>>
>>> On Wed, Nov 18, 2015 at 1:21 PM, Matias Montroull <matimontg at gmail.com>
>>> wrote:
>>> > Luigi, I assume you are workimg on release mode right?
>>> > Would you be able to send the cpp file that you are compiling to test?
>>> >
>>> > Matias
>>> >
>>> > On Nov 18, 2015 7:53 AM, "Luigi Riba" <ribaluigi at gmail.com> wrote:
>>> >>
>>> >> Dear all,
>>> >>
>>> >> I have tried your suggestions and I have simplified my code.
>>> >> Unfortunately, I still have some issues:
>>> >>
>>> >> 1. I cannot read the two images as unsigned short. If I do like this,
>>> >> VisualStudio compiler returns:
>>> >>  Error 2 error C2440: 'initializing' : cannot convert from
>>> >> 'itk::Concept::Detail::UniqueType_bool<false>' to
>>> >> 'itk::Concept::Detail::UniqueType_bool<true>'
>>> >> f:\libs\itk\modules\core\common\include\itkConceptChecking.h 796 1
>>> affine3d
>>> >>
>>> >> 2. I have decided to read the images directly in float;
>>> >>
>>> >> 3. I have set everything to float but I have noticed no memory usage
>>> >> differences between the "dobule" and "float" code. In particular, I
>>> have
>>> >> set:
>>> >>>
>>> >>> typedef float InternalComputationValueType;
>>> >>> typedef itk::AffineTransform< InternalComputationValueType,
>>> Dimension>
>>> >>> TransformType;
>>> >>> typedef
>>> >>>
>>> itk::RegularStepGradientDescentOptimizerv4<InternalComputationValueType>
>>> >>> OptimizerType;
>>> >>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType, ImageType,
>>> >>> ImageType, InternalComputationValueType>  MetricType;
>>> >>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>>> >>> TransformType> RegistrationType;
>>> >>> typedef float CoordinateType;
>>> >>> typedef itk::LinearInterpolateImageFunction<ImageType,
>>> CoordinateType>
>>> >>> InterpolationType;
>>> >>
>>> >>
>>> >> RECAP:
>>> >> 1. I would like to reduce the memory usage of my registration code. In
>>> >> fact, I work with unsigned short, i.e. 16 bit grayscale images, ~1Gb
>>> each
>>> >> and memory usage gets high pretty soon (750MB images -> ~30GB total
>>> memory
>>> >> usage)
>>> >> 2. It has been suggested to set the algorithm to work with float
>>> instead
>>> >> of double;
>>> >> 3. How can I accomplish point 2.?
>>> >> 4. Is point 2. the only viable solution in order to reduce memory
>>> usage?
>>> >> 5  Is there a way to have a finer monitoring of memory usage. For the
>>> >> moment I am using itkMemoryProbe which just gives me the total amount
>>> of
>>> >> used memory.
>>> >>
>>> >> Thank you for your kind support,
>>> >> Luigi
>>> >>
>>> >>
>>> >> 2015-11-16 16:55 GMT+01:00 Luigi Riba <ribaluigi at gmail.com>:
>>> >>>
>>> >>> Dear D?enan and Matias,
>>> >>>
>>> >>> thank you very much for the help.
>>> >>>
>>> >>> I'll test your suggestion and I'll post back the results for the
>>> >>> community.
>>> >>>
>>> >>> Best,
>>> >>>
>>> >>> Luigi
>>> >>>
>>> >>> 2015-11-16 16:53 GMT+01:00 Matias Montroull <matimontg at gmail.com>:
>>> >>>>
>>> >>>> That was my assumption Luigi
>>> >>>>
>>> >>>> El lun., 16 de nov. de 2015 a la(s) 12:30 p. m., D?enan Zuki?
>>> >>>> <dzenanz at gmail.com> escribi?:
>>> >>>>>
>>> >>>>> I believe Matias thought that your original pixel type was signed
>>> >>>>> short.
>>> >>>>>
>>> >>>>> So just use the images you read as unsigned short (set them as
>>> input to
>>> >>>>> the registration), and don't make another copy of the images by
>>> casting them
>>> >>>>> to float.
>>> >>>>>
>>> >>>>> HTH
>>> >>>>>
>>> >>>>> On Mon, Nov 16, 2015 at 10:17 AM, Luigi Riba <ribaluigi at gmail.com>
>>> >>>>> wrote:
>>> >>>>>>
>>> >>>>>> Dear Matias,
>>> >>>>>>
>>> >>>>>> thank you very much for your quick reply.
>>> >>>>>>
>>> >>>>>> Unfortunately, I didn't have time yet to test it. Anyhow, could
>>> you
>>> >>>>>> please tell me the rationale behind it?
>>> >>>>>>
>>> >>>>>> In my code:
>>> >>>>>>
>>> >>>>>> I read two grayscale 16 bit .mhd images. To read them I define the
>>> >>>>>> IOPixelTyep as unsigned short;
>>> >>>>>> I cast them to the "operational" type called PixelType as float
>>> >>>>>> I define all the registration objects templated on float.
>>> >>>>>>
>>> >>>>>> Why should I cast my images to PixelType == signed short?
>>> >>>>>>
>>> >>>>>> Thanks in advance for the support,
>>> >>>>>> Luigi
>>> >>>>>>
>>> >>>>>>
>>> >>>>>>
>>> >>>>>>
>>> >>>>>>
>>> >>>>>> 2015-11-10 15:45 GMT+01:00 Matias Montroull <matimontg at gmail.com
>>> >:
>>> >>>>>>>
>>> >>>>>>> try this:
>>> >>>>>>> typedef  signed short  PixelType;
>>> >>>>>>>
>>> >>>>>>>
>>> >>>>>>> El mar., 10 de nov. de 2015 a la(s) 11:36 a. m., Luigi Riba
>>> >>>>>>> <ribaluigi at gmail.com> escribi?:
>>> >>>>>>>>
>>> >>>>>>>> Dear Matt,
>>> >>>>>>>>
>>> >>>>>>>> I have tried following your suggestion but, unfortunately, it
>>> didn't
>>> >>>>>>>> work out.
>>> >>>>>>>>
>>> >>>>>>>> In particular:
>>> >>>>>>>>
>>> >>>>>>>> I read a pair of uint16 images;
>>> >>>>>>>> I cast them to float pixel type via the CastImageFilter;
>>> >>>>>>>> I change the TInternalComputationValueType for the metric, the
>>> >>>>>>>> optimizer, the transform and the registration doing something
>>> like:
>>> >>>>>>>>>
>>> >>>>>>>>> const unsigned int Dimension = 3;
>>> >>>>>>>>>
>>> >>>>>>>>> typedef float PixelType;
>>> >>>>>>>>>
>>> >>>>>>>>> typedef unsigned short IOPixelType;
>>> >>>>>>>>>
>>> >>>>>>>>> typedef itk::Image<IOPixelType, Dimension> IOImageType;
>>> >>>>>>>>>
>>> >>>>>>>>> typedef itk::Image<PixelType, Dimension> ImageType;
>>> >>>>>>>>>
>>> >>>>>>>>> typedef itk::AffineTransform<float, Dimension > TransformType;
>>> >>>>>>>>>
>>> >>>>>>>>> typedef itk::RegularStepGradientDescentOptimizerv4<float>
>>> >>>>>>>>> OptimizerType;
>>> >>>>>>>>>
>>> >>>>>>>>> typedef itk::MeanSquaresImageToImageMetricv4<ImageType,
>>> >>>>>>>>> ImageType,ImageType,float> MetricType;
>>> >>>>>>>>>
>>> >>>>>>>>> typedef itk::ImageRegistrationMethodv4<ImageType, ImageType,
>>> >>>>>>>>> TransformType> RegistrationType;
>>> >>>>>>>>>
>>> >>>>>>>>> typedef itk::ResampleImageFilter<IOImageType, IOImageType,
>>> >>>>>>>>> float,float> ResampleFilterType;
>>> >>>>>>>>
>>> >>>>>>>>
>>> >>>>>>>>
>>> >>>>>>>>
>>> >>>>>>>>
>>> >>>>>>>> I have put one memory probe before the registration procedure
>>> and
>>> >>>>>>>> one afterwards of it. In the "double" case and in the "float"
>>> case I've seen
>>> >>>>>>>> the same memory consumption.
>>> >>>>>>>>
>>> >>>>>>>> Am I missing something? Are there other things I should change
>>> in my
>>> >>>>>>>> code?
>>> >>>>>>>>
>>> >>>>>>>> Thanks again for the support,
>>> >>>>>>>> Luigi
>>> >>>>>>>>
>>> >>>>>>>>
>>> >>>>>>>>
>>> >>>>>>>> 2015-11-09 17:23 GMT+01:00 Matt McCormick
>>> >>>>>>>> <matt.mccormick at kitware.com>:
>>> >>>>>>>>>
>>> >>>>>>>>> Hi Luigi,
>>> >>>>>>>>>
>>> >>>>>>>>> The type of optimizer should not have too large of an impact on
>>> >>>>>>>>> memory
>>> >>>>>>>>> consumption.  Using a gradient-free optimizer may help
>>> slightly,
>>> >>>>>>>>> but
>>> >>>>>>>>> try changing the pixel type of the input images or, if
>>> possible,
>>> >>>>>>>>> the
>>> >>>>>>>>> parameter type of the transformation, from double to float.
>>> >>>>>>>>>
>>> >>>>>>>>> HTH,
>>> >>>>>>>>> Matt
>>> >>>>>>>>>
>>> >>>>>>>>> On Mon, Nov 9, 2015 at 10:24 AM, Luigi Riba <
>>> ribaluigi at gmail.com>
>>> >>>>>>>>> wrote:
>>> >>>>>>>>> > Dear all,
>>> >>>>>>>>> >
>>> >>>>>>>>> > I am registering a couple of volumes with ITK 4 on windows 7
>>> 64
>>> >>>>>>>>> > bit.
>>> >>>>>>>>> >
>>> >>>>>>>>> > I wrote a code based on the affine transformation, with the
>>> mean
>>> >>>>>>>>> > square
>>> >>>>>>>>> > error metric and the RegularStepGradientDescentOptimizerv4.
>>> >>>>>>>>> > Unfortunately,
>>> >>>>>>>>> > the memory usage is pretty high.
>>> >>>>>>>>> >
>>> >>>>>>>>> > I have checked memory consumption with the itkMemoryProbe
>>> and,
>>> >>>>>>>>> > after looking
>>> >>>>>>>>> > around on previous mailing list messages I have decided to
>>> try
>>> >>>>>>>>> > with a
>>> >>>>>>>>> > gradient free optimizer like the Nelder-Mead one.
>>> >>>>>>>>> >
>>> >>>>>>>>> > So I have rewrote the code using the AmoebaOptimizerV4 and I
>>> have
>>> >>>>>>>>> > continued
>>> >>>>>>>>> > monitoring the memory consumption via MemoryProbe.
>>> Unfortunately,
>>> >>>>>>>>> > it seems
>>> >>>>>>>>> > that nothing has changed. Is this working as expected? If
>>> this is
>>> >>>>>>>>> > the case,
>>> >>>>>>>>> > do you have any suggestion to gave me in order to reduce the
>>> >>>>>>>>> > memory
>>> >>>>>>>>> > consumption of the code?
>>> >>>>>>>>> >
>>> >>>>>>>>> > Thanks in advance for the help.
>>> >>>>>>>>> >
>>> >>>>>>>>> > Best,
>>> >>>>>>>>> >
>>> >>>>>>>>> > Luigi
>>> >>>>>>>>> >
>>> >>>>>>>>> > _______________________________________________
>>> >>>>>>>>> > Community mailing list
>>> >>>>>>>>> > Community at itk.org
>>> >>>>>>>>> > http://public.kitware.com/mailman/listinfo/community
>>> >>>>>>>>> >
>>> >>>>>>>>
>>> >>>>>>>> _______________________________________________
>>> >>>>>>>> Community mailing list
>>> >>>>>>>> Community at itk.org
>>> >>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>> >>>>>>>
>>> >>>>>>> --
>>> >>>>>>> Matias
>>> >>>>>>
>>> >>>>>>
>>> >>>>>>
>>> >>>>>> _______________________________________________
>>> >>>>>> Community mailing list
>>> >>>>>> Community at itk.org
>>> >>>>>> http://public.kitware.com/mailman/listinfo/community
>>> >>>>>>
>>> >>>>>
>>> >>>> --
>>> >>>> Matias
>>> >>>
>>> >>>
>>> >>
>>> >
>>> > _______________________________________________
>>> > Community mailing list
>>> > Community at itk.org
>>> > http://public.kitware.com/mailman/listinfo/community
>>> >
>>>
>>
>> --
> Matias
>
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From a.tunde.szilagyi at gmail.com  Fri Nov 20 00:32:31 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Fri, 20 Nov 2015 06:32:31 +0100
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAPf2UMTA1M-tLKL_LHd7h62RGR7G+-y0NvWaJ-hXED_b7oGKAg@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
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Message-ID: <CAMeM8yY+gtVhJMzmF2AZDB_XETjMYm4_wyavsj9W70rgGYv8xw@mail.gmail.com>

Many thanks!

Tunde

On 19 November 2015 at 16:50, D?enan Zuki? <dzenanz at gmail.com> wrote:

> The documentation page clearly indicates that those are old materials: "*Presentations
> used for tutorials presented in conferences such as IEEE Visualization 2002
> and 2003, MICCAI 2003 and SPIE Medical Imaging 2003 and 2004.*" Is it
> really surprising that there are some discrepancies such as static
> libraries being built by default instead of dynamic ones (which do get put
> in bin folder)?
>
> Anyway, the current goto references are the doxygen docs
> <http://www.itk.org/Doxygen/html/>, the software guide
> <http://www.itk.org/ItkSoftwareGuide.pdf> and examples wiki
> <http://itk.org/Wiki/ITK/Examples>. The old tutorials are there as
> additional documentation.
>
> Regards,
> D?enan
>
> On Thu, Nov 19, 2015 at 2:14 AM, T?nde Szil?gyi <
> a.tunde.szilagyi at gmail.com> wrote:
>
>> The presentation that I have attached can be found on the first website
>> cited in your e-mail:
>>
>> http://www.itk.org/CourseWare/Training/GettingStarted-I.pdf
>>
>> The reason I am making this point is because one week ago I was getting
>> those results, and now I am not. I do not believe that the software has
>> changed so fast. So I am wondering what am I doing wrong.
>>
>> Many thanks.
>>
>>
>>
>>
>> On 19 November 2015 at 07:50, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
>> wrote:
>>
>>> Many thanks.
>>>
>>> On 18 November 2015 at 20:24, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> That is some old presentation (from 2007). Where did you find it?
>>>> Things have changed since then.
>>>>
>>>> The current documentation is indexed here:
>>>> http://www.itk.org/ITK/help/documentation.html
>>>> Especially the software guide: http://www.itk.org/ItkSoftwareGuide.pdf
>>>>
>>>> Regards
>>>>
>>>> On Wed, Nov 18, 2015 at 1:34 PM, T?nde Szil?gyi <
>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>
>>>>> Why is this information different from the one in the official
>>>>> (attached) tutorial, slide 27-28? Many thanks.
>>>>>
>>>>> On 18 November 2015 at 19:15, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>
>>>>>> ITK is largely a template library, which means it does not have a lot
>>>>>> of DLLs. Including headers is mostly sufficient. Also, ~/ITK_bin/
>>>>>> *lib*/Debug/ should contain library files, *NOT* ~/ITK_bin/*bin*
>>>>>> /Debug/.
>>>>>>
>>>>>> It looks like you have successfully built ITK. Now you can configure
>>>>>> projects which require ITK by pointing them (setting ITK_DIR variable) to
>>>>>> *~/ITK_bin/*.
>>>>>>
>>>>>> The simplest possible CMake configuration file for a program using
>>>>>> ITK is attached. You just need to provide C++ code (tester.cpp). It could
>>>>>> be one of the Wiki examples <http://itk.org/Wiki/ITK/Examples>. Then
>>>>>> configure it with CMake, and build it using the same generator as ITK
>>>>>> (VS2015 x64).
>>>>>>
>>>>>> HTH
>>>>>>
>>>>>> On Wed, Nov 18, 2015 at 12:25 PM, T?nde Szil?gyi <
>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>
>>>>>>> Hi D?enan,
>>>>>>>
>>>>>>> Many thanks - there was a different patch that needed to be applied.
>>>>>>> See the description in the attached document. I summarize things below.
>>>>>>>
>>>>>>> System: Windows 10 64bit OS
>>>>>>>
>>>>>>> In summary:
>>>>>>> - re-installed Git [master] + patch that solved the errors
>>>>>>> - re-installed CMake
>>>>>>> - Configured and Generated Project in CMake (NO errors)
>>>>>>> - BUILD-ALL in VS 14 2015 (NO error message)
>>>>>>>
>>>>>>> Result:
>>>>>>> - the .../ITK_bin/bin/Debug does not contain the expected
>>>>>>> folders/files:
>>>>>>> ITKCommon, ITKBasicFilters, ITKAlgorithms, ITKNumerics, ITKFEM,
>>>>>>> ITKIO, ITKStatistics, ITKMetalIO, itkpng, itkzlib.
>>>>>>> - there is no Release folder in .../ITK_bin/bin/
>>>>>>>
>>>>>>> Each and every step is detailed and illustrated in the attached
>>>>>>> documents:
>>>>>>>
>>>>>>> 1. ITK_TOOLKIT_compilation_18112015.pdf (The end of this file
>>>>>>> contains a snapshot of the folders mentioned by You above.)
>>>>>>> 2. CMakeCache.txt
>>>>>>> 3. VS 14 2015 output: VS_14_2015_OUTPUT_18112015.pdf
>>>>>>>
>>>>>>> I would welcome your insights. Many thanks in advance.
>>>>>>>
>>>>>>> --
>>>>>>> Tunde
>>>>>>>
>>>>>>> On 18 November 2015 at 15:45, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> Since static libraries are built by default, ~/ITK_bin/bin/Debug/
>>>>>>>> contains only 3 exe files on my machine (and no DLLs).
>>>>>>>> However ~/ITK_bin/lib/Debug/ should contain a bunch of .lib files. If it is
>>>>>>>> so, you have successfully built ITK in debug mode.
>>>>>>>>
>>>>>>>> Regarding that patch, you should not have to apply it, it should be
>>>>>>>> included. What is the latest commit in the commit log of ITK? Mine is this:
>>>>>>>>
>>>>>>>> Revision: d248d5f52ad66b19346cab3e8336715a3a628980
>>>>>>>> Author: Hyun Jae Kang <hyunjae.kang at kitware.com>
>>>>>>>> Date: 2015-11-17 08:24:57
>>>>>>>> Message:
>>>>>>>> Merge topic 'warning-itkResourceProbe'
>>>>>>>>
>>>>>>>>
>>>>>>>> 3d3b908f COMP: Fix data-conversion warning message on
>>>>>>>> itkResourceProbe
>>>>>>>> ----
>>>>>>>> Modified: Modules/Core/Common/include/itkResourceProbe.h
>>>>>>>> Modified: Modules/Core/Common/include/itkResourceProbe.hxx
>>>>>>>> Modified: CMakeLists.txt
>>>>>>>>
>>>>>>>>
>>>>>>>> On Wed, Nov 18, 2015 at 2:30 AM, T?nde Szil?gyi <
>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>
>>>>>>>>> Thank you, I have made the new selection to VS 14 2015 Win64
>>>>>>>>> generator in CMake.
>>>>>>>>>
>>>>>>>>> However, the patch that solved the error messages is:
>>>>>>>>>
>>>>>>>>> http://review.source.kitware.com/#/c/20272/
>>>>>>>>>
>>>>>>>>> and NOT:
>>>>>>>>>
>>>>>>>>> http://review.source.kitware.com/#/c/20154/1
>>>>>>>>>
>>>>>>>>> I have now no errors during CMake configuration/generation step.
>>>>>>>>> The VS 14 2015 build is successful with 335 succeeded, 0 failed, 0 updated.
>>>>>>>>>
>>>>>>>>> BUT the ~/ITK_bin/bin/Debug/  does not contain the expected
>>>>>>>>> directories/files. By expected I mean the ones specified in the
>>>>>>>>> ITK_Tutorial:
>>>>>>>>>
>>>>>>>>> ITKCommon
>>>>>>>>> ITKBasicFilters
>>>>>>>>> ITKAlgorithms
>>>>>>>>> ITKNumerics
>>>>>>>>> ITKFEM
>>>>>>>>> ITKIO
>>>>>>>>> ITKStatistics
>>>>>>>>> ITKMetalIO
>>>>>>>>> itkpng
>>>>>>>>> itkzlib
>>>>>>>>>
>>>>>>>>> I have attached the CMakeCache.txt and the selection in the
>>>>>>>>> configuration stage in CMake.
>>>>>>>>>
>>>>>>>>> Many thanks in advance.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On 18 November 2015 at 04:40, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>>> What I meant is that the choice of generator should include Win64
>>>>>>>>>> in its name, as shown in the attached screenshot. CMake executable is
>>>>>>>>>> Win32, that does not matter. Also, I just built ITK in 32 bit mode without
>>>>>>>>>> issues, so something else is amiss.
>>>>>>>>>>
>>>>>>>>>> Can you attach your CMakeCache.txt?
>>>>>>>>>>
>>>>>>>>>> On Tue, Nov 17, 2015 at 8:12 PM, T?nde Szil?gyi <
>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>
>>>>>>>>>>> I have tried without the patch, but I am receiving the same
>>>>>>>>>>> error message. My generator is VS 14 2015 (see CMake window on the LHS).
>>>>>>>>>>>
>>>>>>>>>>> Now, I have cleaned everything and started with a fresh
>>>>>>>>>>> installation:
>>>>>>>>>>> - Git Bash
>>>>>>>>>>> - CMake
>>>>>>>>>>> - ITK master
>>>>>>>>>>>
>>>>>>>>>>> I realized that only Win32 CMake exists on the official website:
>>>>>>>>>>> https://cmake.org/download/
>>>>>>>>>>>
>>>>>>>>>>> Is this what you refer to in your e-mail below? What else would
>>>>>>>>>>> you recommend?
>>>>>>>>>>>
>>>>>>>>>>> Many thanks.
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>>>> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> That patch was merged to master, so you don't need to apply it.
>>>>>>>>>>>>
>>>>>>>>>>>> I used VS2015 *Win64* as the generator. You seem to be using
>>>>>>>>>>>> *Win32*, that might make a difference.
>>>>>>>>>>>>
>>>>>>>>>>>> I used version 3.3.1, which I installed some time ago. You are
>>>>>>>>>>>> using release candidate version - I doubt that is the reason.
>>>>>>>>>>>>
>>>>>>>>>>>> Can you try a clean clone (git clone git://itk.org/ITK.git),
>>>>>>>>>>>> and then building into a clean directory?
>>>>>>>>>>>>
>>>>>>>>>>>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> During CMake I am getting the attached error message. All the
>>>>>>>>>>>>> error messages I receive is with reference to exe files starting with
>>>>>>>>>>>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>>>>>>>>>>>> this (http://review.source.kitware.com/#/c/20154/1 -
>>>>>>>>>>>>> Checkout), but this still results in the same error messages as before. I
>>>>>>>>>>>>> have attached one of the error messages that appear during CMake project
>>>>>>>>>>>>> configuration.
>>>>>>>>>>>>>
>>>>>>>>>>>>> Many thanks.
>>>>>>>>>>>>>
>>>>>>>>>>>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>
>>>>>>>>>>>>>> Master branch from git://itk.org/ITK.git
>>>>>>>>>>>>>>
>>>>>>>>>>>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> Which ITK version did you use?
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <
>>>>>>>>>>>>>>> dzenanz at gmail.com> wrote:
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> This configuration compiles fine in debug too.
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <
>>>>>>>>>>>>>>>> dzenanz at gmail.com> wrote:
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> Hi T?nde,
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> checking out *master* branch and CMake configuration went
>>>>>>>>>>>>>>>>> fine. To speed up compile time, I disabled building of examples and
>>>>>>>>>>>>>>>>> testing. I also enabled ITK_LEGACY_REMOVE. I did not enable
>>>>>>>>>>>>>>>>> Module_ITKVtkGlue.
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> Opening the solution file in VS2015 was fairly slow - it
>>>>>>>>>>>>>>>>> might have something to do with the fact I just installed it. Building in
>>>>>>>>>>>>>>>>> Release x64 finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> Regards,
>>>>>>>>>>>>>>>>> D?enan
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> Hi Everyone,
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> I would be interested whether anyone has managed to build
>>>>>>>>>>>>>>>>>> the ITK Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> Many thanks.
>>>>>>>>>>>>>>>>>> Tunde
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>>>>>> Community mailing list
>>>>>>>>>>>>>>>>>> Community at itk.org
>>>>>>>>>>>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>> --
>>>>>>>>>>>>>>> --
>>>>>>>>>>>>>>> Tunde
>>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> --
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Tunde
>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> --
>>>>>>>>>>> --
>>>>>>>>>>> Tunde
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> --
>>>>>>>>> Tunde
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> --
>>>>>>> Tunde
>>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> --
>>>>> Tunde
>>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> --
>>> Tunde
>>>
>>
>>
>>
>> --
>> --
>> Tunde
>>
>
>


-- 
--
Tunde
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From osubachev at gmail.com  Fri Nov 20 07:26:20 2015
From: osubachev at gmail.com (Oleg Subachev)
Date: Fri, 20 Nov 2015 17:26:20 +0500
Subject: [ITK] How to get to get image similarity metrics under .NET ?
In-Reply-To: <D2734927.6777%yanivz@mail.nih.gov>
References: <CAD0V+a2fhGDFbCg8wHC9+NZi8rda278_nhc2ETkTAXQZEQ5JXw@mail.gmail.com>
 <D885E0B0-F39F-4076-986E-A48115E8BD21@mail.nih.gov>
 <CAD0V+a0hWFRsvctcV0TPbBPaAZzQvhJhYyhr-+2w6OTMdvctEQ@mail.gmail.com>
 <D271FDCB.66B3%yanivz@mail.nih.gov>
 <CAD0V+a2MTa=owoZADTXy60KRifrVh57FVc_aq2ofe8qxvxk6ig@mail.gmail.com>
 <CAD0V+a1VLdf+DSx86xi61UW-zYvto3rbX4JHr3HSiG8OEeFLuQ@mail.gmail.com>
 <D2734927.6777%yanivz@mail.nih.gov>
Message-ID: <CAD0V+a3ZODdCVRASBXC6z10vJA+D1LQ7mvObdY5SX00_h7xbZQ@mail.gmail.com>

Thank you, Ziv:
Now merics are calculated successfully.
But where to get information about meaning of various kinds of
supported metrics.
E.g. this code for the same image
using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
{
method.SetMetricAsMattesMutualInformation();
method.SetInitialTransform( new Euler2DTransform() );
double metric = method.MetricEvaluate(
SimpleITK.ReadImage( "1.png", PixelIDValueEnum.sitkFloat32 ),
SimpleITK.ReadImage( "1.png", PixelIDValueEnum.sitkFloat32 ) );
}
yields -0,984914070939179
Whereas:
SetMetricAsANTSNeighborhoodCorrelation( 2 ) yields -1
SetMetricAsCorrelation() yields -1
SetMetricAsJointHistogramMutualInformation() yields -0,601327526729281
SetMetricAsMeanSquares() yields 0

How to normalize all metrics to the same range ?
-- 
Best regards,
Oleg Subachev

On Thu, Nov 19, 2015 at 7:49 PM, Yaniv, Ziv Rafael (NIH/NLM/LHC) [C]
<zivrafael.yaniv at nih.gov> wrote:
> Hello Oleg,
>
> It is necessary to set the initial transform as the MetricEvaluate method
> will use that transformation to evaluate your similarity metric, the same
> way it is done during registration. There is always a transformation
> between the two images, even if it is the identity. Something like
> method.SetInitialTransform(new Euler3DTransform()) if your images are 3D
> or Euler2DTransform() if they are 2D. In your case the you can use any of
> the transformation types Translation,Affine? as you are creating the
> identity transform.
>
>    Ziv
>
>
>
> On 11/19/15, 6:57 AM, "Oleg Subachev" <osubachev at gmail.com> wrote:
>
>>Since error message says something about "initial transform" may be it
>>is necessary to set up initial transform ?
>>As you see from code I do not call SetInitialTransform method at all.
>>I hope that no initial transform or default initial transform (if any)
>>will be enough.
>>I simply want to get similarity metric value for two image files
>>without any transform.
>>
>>--
>>Best regards,
>>Oleg Subachev
>>
>>On Thu, Nov 19, 2015 at 12:01 PM, Oleg Subachev <osubachev at gmail.com>
>>wrote:
>>> Thanks all of you.
>>> But now the code:
>>> using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
>>> {
>>> method.SetMetricAsMattesMutualInformation();
>>> double metric = method.MetricEvaluate(
>>> SimpleITK.ReadImage( "1.png", PixelIDValueEnum.sitkFloat32
>>> ),SimpleITK.ReadImage( "2.png", PixelIDValueEnum.sitkFloat32 ));
>>> }
>>>
>>> throws new exception:
>>> {"Exception thrown in SimpleITK
>>> ImageRegistrationMethod_MetricEvaluate:
>>>
>>>..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegistra
>>>tionMethod.cxx:922:\nsitk::ERROR:
>>> Unexpected error converting initial transform! Possible miss matching
>>> dimensions!"}
>>>
>>> --
>>> Best regards,
>>> Oleg Subachev
>>>
>>>
>>> On Wed, Nov 18, 2015 at 8:14 PM, Yaniv, Ziv Rafael (NIH/NLM/LHC) [C]
>>> <zivrafael.yaniv at nih.gov> wrote:
>>>> Hello Oleg,
>>>>
>>>> The ImageRegistrationMethod only supports images with pixel type
>>>> sitkFloat32 and sitkFloat64. You can either specify the pixel type when
>>>> reading the image
>>>>
>>>>(http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#a0
>>>>2ff
>>>> c30c3c55dd9eeff3f76ba19f35e7) or read the image with its native pixel
>>>>type
>>>> and then
>>>> use the SimpleITK Cast function
>>>>
>>>>(http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#af
>>>>8c9
>>>> d7cc96a299a05890e9c3db911885), casting it to either of these two types.
>>>>
>>>>    Ziv
>>>>
>>>>
>>>>
>>>> On 11/18/15, 9:51 AM, "Oleg Subachev" <osubachev at gmail.com> wrote:
>>>>
>>>>>Thanks, Brad.
>>>>>
>>>>>But when I try this code:
>>>>>using ( ImageRegistrationMethod method = new ImageRegistrationMethod()
>>>>>)
>>>>>{
>>>>>method.SetMetricAsMattesMutualInformation( 50 );
>>>>>double metric = method.MetricEvaluate( SimpleITK.ReadImage( "1.png" ),
>>>>>SimpleITK.ReadImage( "2.png" ) );
>>>>>}
>>>>>
>>>>>I get the exception:
>>>>>{"Exception thrown in SimpleITK
>>>>>ImageRegistrationMethod_MetricEvaluate:
>>>>>..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegist
>>>>>rat
>>>>>ionMethod.cxx:862:\nsitk::ERROR:
>>>>>Filter does not support fixed image type: vector of 8-bit unsigned
>>>>>integer"}
>>>>>
>>>>>What's wrong ?
>>>>>What is the simplest way to get similarity value of two image files ?
>>>>>
>>>>>--
>>>>>Best regards,
>>>>>Oleg Subachev
>>>>>
>>>>>On Tue, Nov 17, 2015 at 6:41 PM, Bradley Lowekamp
>>>>><blowekamp at mail.nih.gov> wrote:
>>>>>> Hello,
>>>>>>
>>>>>> You should look into SimpleITK's
>>>>>>ImageRegistrationMethod::MetricEvaluate( Image, Image ) member
>>>>>>function.
>>>>>>
>>>>>> Here is a Python example of using the method, C# should be similar:
>>>>>>
>>>>>>
>>>>>>http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/63_Regi
>>>>>>str
>>>>>>ation_Initialization.html
>>>>>>
>>>>>> HTH,
>>>>>> Brad
>>>>>>
>>>>>> On Nov 17, 2015, at 8:24 AM, Oleg Subachev <osubachev at gmail.com>
>>>>>>wrote:
>>>>>>
>>>>>>> I need to get similarity metrics for 2D images under .NET.
>>>>>>> According to ITK documentation
>>>>>>> (http://www.itk.org/Doxygen/html/ImageSimilarityMetricsPage.html)
>>>>>>> there are several Image To Image metrics available.
>>>>>>> ITK itself contains corresponding methods.
>>>>>>> But I cannot find those methods in SimpleITK :-(
>>>>>>> There is SimpleITK.NormalizedCorrelation(Image, Image, Image)
>>>>>>>method,
>>>>>>> but it seems to have nothing with similarity metrics.
>>>>>>>
>>>>>>> How to get to get image similarity metrics under .NET ?
>>>>>>>
>>>>>>> --
>>>>>>> Best regards,
>>>>>>>
>>>>>>> Oleg Subachev
>>>>>>> _______________________________________________
>>>>>>> Community mailing list
>>>>>>> Community at itk.org
>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>
>>>>>_______________________________________________
>>>>>Community mailing list
>>>>>Community at itk.org
>>>>>http://public.kitware.com/mailman/listinfo/community
>>>>
>>_______________________________________________
>>Community mailing list
>>Community at itk.org
>>http://public.kitware.com/mailman/listinfo/community

From cervellone at gmail.com  Fri Nov 20 09:42:28 2015
From: cervellone at gmail.com (cervellone at gmail.com)
Date: Fri, 20 Nov 2015 15:42:28 +0100
Subject: [ITK] [ITK-users] image spacing and structuring element sizes
Message-ID: <CAO8H67Mo48ym-iMNZ4-bemnKVZOz_LbwQ1Wuw3aTassW77-Zww@mail.gmail.com>

Dear all

I was wondering if structuring element operations take the image spacing
into account.

For example that a ball structuring element gets transformed accordingly to
image spacing in order to give a correct result specified by the radius. If
not, is there a possibility to use an elipsoid ?


Thanks

Jp
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From zivrafael.yaniv at nih.gov  Fri Nov 20 09:55:59 2015
From: zivrafael.yaniv at nih.gov (Yaniv, Ziv Rafael (NIH/NLM/LHC) [C])
Date: Fri, 20 Nov 2015 14:55:59 +0000
Subject: [ITK] How to get to get image similarity metrics under .NET ?
In-Reply-To: <CAD0V+a3ZODdCVRASBXC6z10vJA+D1LQ7mvObdY5SX00_h7xbZQ@mail.gmail.com>
References: <CAD0V+a2fhGDFbCg8wHC9+NZi8rda278_nhc2ETkTAXQZEQ5JXw@mail.gmail.com>
 <D885E0B0-F39F-4076-986E-A48115E8BD21@mail.nih.gov>
 <CAD0V+a0hWFRsvctcV0TPbBPaAZzQvhJhYyhr-+2w6OTMdvctEQ@mail.gmail.com>
 <D271FDCB.66B3%yanivz@mail.nih.gov>
 <CAD0V+a2MTa=owoZADTXy60KRifrVh57FVc_aq2ofe8qxvxk6ig@mail.gmail.com>
 <CAD0V+a1VLdf+DSx86xi61UW-zYvto3rbX4JHr3HSiG8OEeFLuQ@mail.gmail.com>
 <D2734927.6777%yanivz@mail.nih.gov>
 <CAD0V+a3ZODdCVRASBXC6z10vJA+D1LQ7mvObdY5SX00_h7xbZQ@mail.gmail.com>
Message-ID: <D2749A11.68AC%yanivz@mail.nih.gov>

Hello Oleg,

Unfortunately there is no transformation that can map the values between
all similarity measures, these quantities are
not commensurate and thus you cannot normalize them all to the same range
in a meaningful manner. The reason for the usage of
different similarity measures is that they make different assumptions
about the relationships between the intensity values in the two images.
For instance Correlation assumes an affine mapping between intensities
while Mutual Information assumes a stochastic mapping which is more
generic. On the other hand Correlation can be computed more efficiently
and potentially has fewer local minima. If you know the physics relating
your images then you can use a more appropriate similarity measure (in
Bayesian terms - you are using a strong prior).

To gain a better understanding of intensity based registration I suggest
looking at the literature, see for exmaple:
http://eecs.vanderbilt.edu/people/mikefitzpatrick/papers/2000_Fitzpatrrick_
HandbookII_Ch8_Registration.pdf .
 
    Ziv



On 11/20/15, 7:26 AM, "Oleg Subachev" <osubachev at gmail.com> wrote:

>Thank you, Ziv:
>Now merics are calculated successfully.
>But where to get information about meaning of various kinds of
>supported metrics.
>E.g. this code for the same image
>using ( ImageRegistrationMethod method = new ImageRegistrationMethod() )
>{
>method.SetMetricAsMattesMutualInformation();
>method.SetInitialTransform( new Euler2DTransform() );
>double metric = method.MetricEvaluate(
>SimpleITK.ReadImage( "1.png", PixelIDValueEnum.sitkFloat32 ),
>SimpleITK.ReadImage( "1.png", PixelIDValueEnum.sitkFloat32 ) );
>}
>yields -0,984914070939179
>Whereas:
>SetMetricAsANTSNeighborhoodCorrelation( 2 ) yields -1
>SetMetricAsCorrelation() yields -1
>SetMetricAsJointHistogramMutualInformation() yields -0,601327526729281
>SetMetricAsMeanSquares() yields 0
>
>How to normalize all metrics to the same range ?
>-- 
>Best regards,
>Oleg Subachev
>
>On Thu, Nov 19, 2015 at 7:49 PM, Yaniv, Ziv Rafael (NIH/NLM/LHC) [C]
><zivrafael.yaniv at nih.gov> wrote:
>> Hello Oleg,
>>
>> It is necessary to set the initial transform as the MetricEvaluate
>>method
>> will use that transformation to evaluate your similarity metric, the
>>same
>> way it is done during registration. There is always a transformation
>> between the two images, even if it is the identity. Something like
>> method.SetInitialTransform(new Euler3DTransform()) if your images are 3D
>> or Euler2DTransform() if they are 2D. In your case the you can use any
>>of
>> the transformation types Translation,Affine? as you are creating the
>> identity transform.
>>
>>    Ziv
>>
>>
>>
>> On 11/19/15, 6:57 AM, "Oleg Subachev" <osubachev at gmail.com> wrote:
>>
>>>Since error message says something about "initial transform" may be it
>>>is necessary to set up initial transform ?
>>>As you see from code I do not call SetInitialTransform method at all.
>>>I hope that no initial transform or default initial transform (if any)
>>>will be enough.
>>>I simply want to get similarity metric value for two image files
>>>without any transform.
>>>
>>>--
>>>Best regards,
>>>Oleg Subachev
>>>
>>>On Thu, Nov 19, 2015 at 12:01 PM, Oleg Subachev <osubachev at gmail.com>
>>>wrote:
>>>> Thanks all of you.
>>>> But now the code:
>>>> using ( ImageRegistrationMethod method = new
>>>>ImageRegistrationMethod() )
>>>> {
>>>> method.SetMetricAsMattesMutualInformation();
>>>> double metric = method.MetricEvaluate(
>>>> SimpleITK.ReadImage( "1.png", PixelIDValueEnum.sitkFloat32
>>>> ),SimpleITK.ReadImage( "2.png", PixelIDValueEnum.sitkFloat32 ));
>>>> }
>>>>
>>>> throws new exception:
>>>> {"Exception thrown in SimpleITK
>>>> ImageRegistrationMethod_MetricEvaluate:
>>>>
>>>>..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegist
>>>>ra
>>>>tionMethod.cxx:922:\nsitk::ERROR:
>>>> Unexpected error converting initial transform! Possible miss matching
>>>> dimensions!"}
>>>>
>>>> --
>>>> Best regards,
>>>> Oleg Subachev
>>>>
>>>>
>>>> On Wed, Nov 18, 2015 at 8:14 PM, Yaniv, Ziv Rafael (NIH/NLM/LHC) [C]
>>>> <zivrafael.yaniv at nih.gov> wrote:
>>>>> Hello Oleg,
>>>>>
>>>>> The ImageRegistrationMethod only supports images with pixel type
>>>>> sitkFloat32 and sitkFloat64. You can either specify the pixel type
>>>>>when
>>>>> reading the image
>>>>>
>>>>>(http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#
>>>>>a0
>>>>>2ff
>>>>> c30c3c55dd9eeff3f76ba19f35e7) or read the image with its native pixel
>>>>>type
>>>>> and then
>>>>> use the SimpleITK Cast function
>>>>>
>>>>>(http://www.itk.org/SimpleITKDoxygen/html/namespaceitk_1_1simple.html#
>>>>>af
>>>>>8c9
>>>>> d7cc96a299a05890e9c3db911885), casting it to either of these two
>>>>>types.
>>>>>
>>>>>    Ziv
>>>>>
>>>>>
>>>>>
>>>>> On 11/18/15, 9:51 AM, "Oleg Subachev" <osubachev at gmail.com> wrote:
>>>>>
>>>>>>Thanks, Brad.
>>>>>>
>>>>>>But when I try this code:
>>>>>>using ( ImageRegistrationMethod method = new
>>>>>>ImageRegistrationMethod()
>>>>>>)
>>>>>>{
>>>>>>method.SetMetricAsMattesMutualInformation( 50 );
>>>>>>double metric = method.MetricEvaluate( SimpleITK.ReadImage( "1.png"
>>>>>>),
>>>>>>SimpleITK.ReadImage( "2.png" ) );
>>>>>>}
>>>>>>
>>>>>>I get the exception:
>>>>>>{"Exception thrown in SimpleITK
>>>>>>ImageRegistrationMethod_MetricEvaluate:
>>>>>>..\\..\\..\\..\\..\\SimpleITK\\Code\\Registration\\src\\sitkImageRegi
>>>>>>st
>>>>>>rat
>>>>>>ionMethod.cxx:862:\nsitk::ERROR:
>>>>>>Filter does not support fixed image type: vector of 8-bit unsigned
>>>>>>integer"}
>>>>>>
>>>>>>What's wrong ?
>>>>>>What is the simplest way to get similarity value of two image files ?
>>>>>>
>>>>>>--
>>>>>>Best regards,
>>>>>>Oleg Subachev
>>>>>>
>>>>>>On Tue, Nov 17, 2015 at 6:41 PM, Bradley Lowekamp
>>>>>><blowekamp at mail.nih.gov> wrote:
>>>>>>> Hello,
>>>>>>>
>>>>>>> You should look into SimpleITK's
>>>>>>>ImageRegistrationMethod::MetricEvaluate( Image, Image ) member
>>>>>>>function.
>>>>>>>
>>>>>>> Here is a Python example of using the method, C# should be similar:
>>>>>>>
>>>>>>>
>>>>>>>http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/63_Re
>>>>>>>gi
>>>>>>>str
>>>>>>>ation_Initialization.html
>>>>>>>
>>>>>>> HTH,
>>>>>>> Brad
>>>>>>>
>>>>>>> On Nov 17, 2015, at 8:24 AM, Oleg Subachev <osubachev at gmail.com>
>>>>>>>wrote:
>>>>>>>
>>>>>>>> I need to get similarity metrics for 2D images under .NET.
>>>>>>>> According to ITK documentation
>>>>>>>> (http://www.itk.org/Doxygen/html/ImageSimilarityMetricsPage.html)
>>>>>>>> there are several Image To Image metrics available.
>>>>>>>> ITK itself contains corresponding methods.
>>>>>>>> But I cannot find those methods in SimpleITK :-(
>>>>>>>> There is SimpleITK.NormalizedCorrelation(Image, Image, Image)
>>>>>>>>method,
>>>>>>>> but it seems to have nothing with similarity metrics.
>>>>>>>>
>>>>>>>> How to get to get image similarity metrics under .NET ?
>>>>>>>>
>>>>>>>> --
>>>>>>>> Best regards,
>>>>>>>>
>>>>>>>> Oleg Subachev
>>>>>>>> _______________________________________________
>>>>>>>> Community mailing list
>>>>>>>> Community at itk.org
>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>
>>>>>>_______________________________________________
>>>>>>Community mailing list
>>>>>>Community at itk.org
>>>>>>http://public.kitware.com/mailman/listinfo/community
>>>>>
>>>_______________________________________________
>>>Community mailing list
>>>Community at itk.org
>>>http://public.kitware.com/mailman/listinfo/community
>_______________________________________________
>Community mailing list
>Community at itk.org
>http://public.kitware.com/mailman/listinfo/community


From goretzki.imre at gmail.com  Fri Nov 20 10:24:22 2015
From: goretzki.imre at gmail.com (Imre Goretzki)
Date: Fri, 20 Nov 2015 16:24:22 +0100
Subject: [ITK] Reading multi-paged TIFF Image
In-Reply-To: <mailman.0.1448031163.1645.community@itk.org>
References: <mailman.0.1448031163.1645.community@itk.org>
Message-ID: <564F3B26.1020003@gmail.com>

Hey guys,

i was wondering if you could help me getting all pages from a 
multi-paged TIFF image.

There are plenty of examples on how to read tiff images, e.g.

|typedefitk::RGBAPixel<unsigned char> PixelType;// Pixel 
typeconstunsignedintDimension=3;typedefitk::Image<PixelType,Dimension>ImageType;ImageType::Pointerimage; 
||typedefitk::ImageFileReader<ImageType>ReaderType;|
|||itk::TIFFImageIO::Pointer io = itk::TIFFImageIO::New()|| 
ReaderType::Pointerreader=ReaderType::New();constchar*filename 
="path/to/file.tif";|||| reader->SetImageIO(io);reader->SetFileName(filename); ||ImageType::IndexTypepixelIndex;pixelIndex[0]=103; //xpixelIndex[1]=178; //y|||pixelIndex[2]=0;| ImageType::PixelTypepixelValue 
=image->GetPixel(pixelIndex);std::cout <<"pixel : "<<pixelValue 
<<std::endl;|

in this example, if i'm not mistaking, the third pixelIndex corresponds 
to the pages of a stacked tiff image.

Is this the right way to get access to single pages? And how do I get 
the RGB values?

My TIFF file is structured as follows:

It has at least 47 Images stored, each of those has the following dimensions
520x520x3 (WxHxRGB)

I checked these informations via SCIFIOImageIO::ReadImageInformation, 
like this:

std::cout << "Pixel Type is " << 
imageIO->GetComponentTypeAsString(pixelType) << std::endl; const size_t 
numDimensions = imageIO->GetNumberOfDimensions(); std::cout << 
"numDimensions: " << numDimensions << std::endl; // '5' std::cout << 
"component size: " << imageIO->GetComponentSize() << std::endl; // '8' 
std::cout << "pixel type (string): " << 
imageIO->GetPixelTypeAsString(imageIO->GetPixelType()) << std::endl; // 
'vector' std::cout << "pixel type: " << imageIO->GetPixelType() << 
std::endl; // '5'


or this:

ImageType::Pointer img = reader->GetOutput(); ImageType::RegionType = 
img->GetLargestPossibleRegion(); std::cout << "Region: " << region << 
std::endl; // '5' OUTPUT:
Dimension: 5 Index: [0,0,0,0,0] Size: [520, 520, 47, 1, 3]



If I print the pixels, I will get the same output for each channel 
(which I guess is RGB).

If I change the input dimension to 5, the index has to be changed:

|ImageType::IndexTypepixelIndex;pixelIndex[0]=240; //xpixelIndex[1]=430; //y|||pixelIndex[2]=0;| //z |||pixelIndex[3]=0;| //timestamp i guess? Dimension of this is always 1 
for my data |||pixelIndex[4]=0;| //R-Channel|
||pixelIndex[4]=1;| //G-Channel|
||pixelIndex[4]=2;| //B-Channel|

Is this correct?

OUTPUT for pixels via img->GetPixel(pixelIndex) is
[930, 930, 930]

for idx = [ {{240, 430, 0, 0, 0}}, {{240, 430, 0, 0, 1}}  ,{{240, 430, 0, 0, 2}}  ]



I could think of using an ImageIterator, but I don't know how to use 
them in a multi-paged image.

The last thing I would like to ask you is, if you could help me on how 
to use the TIFFImageIO::ReadVolume.
It says that you could read 3D images, but there are neither examples 
nor tips.

To sum things up, i would like to know if there is a good way to access 
each image in such a multi-paged TIFF file.

I really hope, you guys can help me.

Thanks
Imre
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From bill.lorensen at gmail.com  Fri Nov 20 10:29:24 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Fri, 20 Nov 2015 10:29:24 -0500
Subject: [ITK] [ITK-dev] Future of ITKApps
Message-ID: <CADZJ4hNG8R5P11O9goBXFOu37i437tv9UPYjwmb6S6-w6PrenQ@mail.gmail.com>

Folks,

ITKApps contains applications written a long time ago. We as a group
have been patching the apps, fixing compile errors as ITK and VTK
api's change.

Also, many of the apps use an old version of FLTK as a gui.

I think the maintenance cost is too much for these old applications.

We should consider freezing it at VTK5.10 and the last ITK version
that works with it.

As Matt has mentioned there are several modern apps like slicer and
SNAP that can provide users with a better experience.

Thoughts?

Bill

-- 
Unpaid intern in BillsBasement at noware dot com
_______________________________________________
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http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

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From hans-johnson at uiowa.edu  Fri Nov 20 10:49:19 2015
From: hans-johnson at uiowa.edu (Johnson, Hans J)
Date: Fri, 20 Nov 2015 15:49:19 +0000
Subject: [ITK] [ITK-dev] Future of ITKApps
In-Reply-To: <CADZJ4hNG8R5P11O9goBXFOu37i437tv9UPYjwmb6S6-w6PrenQ@mail.gmail.com>
References: <CADZJ4hNG8R5P11O9goBXFOu37i437tv9UPYjwmb6S6-w6PrenQ@mail.gmail.com>
Message-ID: <9DB0559B-F7FD-4FEB-8423-C7398659CBD4@uiowa.edu>

+10  ? That is not a typo.  Really +10.

The slicer extensions framework is one of many improved solutions over fltk apps.
Heck? many of the demo apps could be easily re-written in SimpleITK with ipython notebook widgets.

Hans


On 11/20/15, 9:29 AM, "Insight-developers on behalf of Bill Lorensen" <insight-developers-bounces at itk.org on behalf of bill.lorensen at gmail.com> wrote:

>Folks,
>
>ITKApps contains applications written a long time ago. We as a group
>have been patching the apps, fixing compile errors as ITK and VTK
>api's change.
>
>Also, many of the apps use an old version of FLTK as a gui.
>
>I think the maintenance cost is too much for these old applications.
>
>We should consider freezing it at VTK5.10 and the last ITK version
>that works with it.
>
>As Matt has mentioned there are several modern apps like slicer and
>SNAP that can provide users with a better experience.
>
>Thoughts?
>
>Bill
>
>--
>Unpaid intern in BillsBasement at noware dot com
>_______________________________________________
>Powered by www.kitware.com
>
>Visit other Kitware open-source projects at
>http://www.kitware.com/opensource/opensource.html
>
>Kitware offers ITK Training Courses, for more information visit:
>http://kitware.com/products/protraining.php
>
>Please keep messages on-topic and check the ITK FAQ at:
>http://www.itk.org/Wiki/ITK_FAQ
>
>Follow this link to subscribe/unsubscribe:
>http://public.kitware.com/mailman/listinfo/insight-developers


________________________________
Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is confidential and may be legally privileged.  If you are not the intended recipient, you are hereby notified that any retention, dissemination, distribution, or copying of this communication is strictly prohibited.  Please reply to the sender that you have received the message in error, then delete it.  Thank you.
________________________________
_______________________________________________
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From matt.mccormick at kitware.com  Fri Nov 20 11:15:31 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 20 Nov 2015 11:15:31 -0500
Subject: [ITK] [ITK-users] image spacing and structuring element sizes
In-Reply-To: <CAO8H67Mo48ym-iMNZ4-bemnKVZOz_LbwQ1Wuw3aTassW77-Zww@mail.gmail.com>
References: <CAO8H67Mo48ym-iMNZ4-bemnKVZOz_LbwQ1Wuw3aTassW77-Zww@mail.gmail.com>
Message-ID: <CALzTN-Q1jKkeqqAfG1mz7MDLoDdzA_BAkRYL8rMeuMYbWDv7HA@mail.gmail.com>

Dear Jp,

Since the operations occur pixel-wise, the sizes are given in pixels
that do not take into account image spacing.  However, the size can be
specified differently in each direction.  More details can be found in
the FlatStructuringElement documentation. [1].

HTH,
Matt

[1] http://www.itk.org/Doxygen/html/classitk_1_1FlatStructuringElement.html

On Fri, Nov 20, 2015 at 9:42 AM,  <cervellone at gmail.com> wrote:
> Dear all
>
> I was wondering if structuring element operations take the image spacing
> into account.
>
> For example that a ball structuring element gets transformed accordingly to
> image spacing in order to give a correct result specified by the radius. If
> not, is there a possibility to use an elipsoid ?
>
>
> Thanks
>
> Jp
>
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From dzenanz at gmail.com  Fri Nov 20 11:29:39 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Fri, 20 Nov 2015 11:29:39 -0500
Subject: [ITK] Reading multi-paged TIFF Image
In-Reply-To: <564F3B26.1020003@gmail.com>
References: <mailman.0.1448031163.1645.community@itk.org>
 <564F3B26.1020003@gmail.com>
Message-ID: <CAPf2UMRMQ4uWNNZDXab8tVeRbYxnFgcJRrXTFr0pJeWsQXus_w@mail.gmail.com>

Hi Imre,

you can extract a single slice using extract filter
<http://www.itk.org/Doxygen/html/classitk_1_1ExtractImageFilter.html> (collapse
on 3rd and 4th dimension). Then you can access it using RGB syntax
<http://www.itk.org/Doxygen44/html/RGBImage_8cxx-example.html>. I don't
think you need to explicitly set TIFFImageIO, it should be chosen
automatically based on the file extension.

Regards,
D?enan

On Fri, Nov 20, 2015 at 10:24 AM, Imre Goretzki <goretzki.imre at gmail.com>
wrote:

> Hey guys,
>
> i was wondering if you could help me getting all pages from a multi-paged
> TIFF image.
>
> There are plenty of examples on how to read tiff images, e.g.
>
> typedef itk::RGBAPixel<unsigned char> PixelType;   // Pixel typeconst unsigned int Dimension = 3;typedef itk::Image< PixelType, Dimension > ImageType; ImageType::Pointer image;
> typedef itk::ImageFileReader< ImageType > ReaderType;itk::TIFFImageIO::Pointer io = itk::TIFFImageIO::New()ReaderType::Pointer reader = ReaderType::New();
> const char * filename = "path/to/file.tif";
> reader->SetImageIO(io);
> reader->SetFileName(filename);
> ImageType::IndexType pixelIndex;
> pixelIndex[0] = 103;        //x
> pixelIndex[1] = 178;        //ypixelIndex[2] = 0;
>  ImageType::PixelType pixelValue = image->GetPixel(pixelIndex);
> std::cout << "pixel : " << pixelValue << std::endl;
>
> in this example, if i'm not mistaking, the third pixelIndex corresponds to
> the pages of a stacked tiff image.
>
> Is this the right way to get access to single pages? And how do I get the
> RGB values?
>
> My TIFF file is structured as follows:
>
> It has at least 47 Images stored, each of those has the following
> dimensions
> 520x520x3 (WxHxRGB)
>
> I checked these informations via SCIFIOImageIO::ReadImageInformation, like
> this:
>
> std::cout << "Pixel Type is " << imageIO->GetComponentTypeAsString(pixelType) << std::endl;const size_t numDimensions =  imageIO->GetNumberOfDimensions();
> std::cout << "numDimensions: " << numDimensions << std::endl; // '5'
>
> std::cout << "component size: " << imageIO->GetComponentSize() << std::endl; // '8'
> std::cout << "pixel type (string): " << imageIO->GetPixelTypeAsString(imageIO->GetPixelType()) << std::endl; // 'vector'
> std::cout << "pixel type: " << imageIO->GetPixelType() << std::endl; // '5'
>
>
> or this:
>
> ImageType::Pointer img = reader->GetOutput();
> ImageType::RegionType = img->GetLargestPossibleRegion();
> std::cout << "Region:  " << region << std::endl; // '5'
>
> OUTPUT:Dimension: 5
> Index: [0,0,0,0,0]
> Size: [520, 520, 47, 1, 3]
>
>
>
>
> If I print the pixels, I will get the same output for each channel (which
> I guess is RGB).
>
> If I change the input dimension to 5, the index has to be changed:
>
> ImageType::IndexType pixelIndex;
> pixelIndex[0] = 240;        //x
> pixelIndex[1] = 430;        //ypixelIndex[2] = 0;          //zpixelIndex[3] = 0;          //timestamp i guess? Dimension of this is always 1 for my datapixelIndex[4] = 0;          //R-ChannelpixelIndex[4] = 1;          //G-ChannelpixelIndex[4] = 2;          //B-Channel
>
> Is this correct?
>
> OUTPUT for pixels via img->GetPixel(pixelIndex) is
> [930, 930, 930]
> for idx = [ {{240, 430, 0, 0, 0}} ,  {{240, 430, 0, 0, 1}} , {{240, 430, 0, 0, 2}} ]
>
>
>
> I could think of using an ImageIterator, but I don't know how to use them
> in a multi-paged image.
>
> The last thing I would like to ask you is, if you could help me on how to
> use the TIFFImageIO::ReadVolume.
> It says that you could read 3D images, but there are neither examples nor
> tips.
>
> To sum things up, i would like to know if there is a good way to access
> each image in such a multi-paged TIFF file.
>
> I really hope, you guys can help me.
>
> Thanks
> Imre
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
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From matt.mccormick at kitware.com  Fri Nov 20 11:53:47 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 20 Nov 2015 11:53:47 -0500
Subject: [ITK] [ITK-dev] Future of ITKApps
In-Reply-To: <9DB0559B-F7FD-4FEB-8423-C7398659CBD4@uiowa.edu>
References: <CADZJ4hNG8R5P11O9goBXFOu37i437tv9UPYjwmb6S6-w6PrenQ@mail.gmail.com>
 <9DB0559B-F7FD-4FEB-8423-C7398659CBD4@uiowa.edu>
Message-ID: <CALzTN-QkarPWryaJgfcZ9vbVSy1Q-ASOCiy1RT+C7h099SmAJw@mail.gmail.com>

+1.

I patched most of the apps for VTK 6, which is what we have in the
Superbuild, so I would like to get that merged.

FLTK makes these building these quite finicky and hard to maintain.
There are many other better tools and demonstrations out there on how
to develop an app based on ITK. Yet, these apps still provide value
both in the functionality they provide and in the minimal,
self-contained demonstration of how to use ITK + VTK.

There was a discussion recently on GitHub on how to use one of the
Apps on Windows [1]. Following that thread, I created a Docker image
to run the apps [2]. This runs on OSX / Linux / Windows, and can be
interacted with on all platforms, including tablets, phones. People
will be able to use the apps in perpetuity without requiring further
maintenance.

I propose we create the create the Docker apps, then freeze
development.  ITKApps released with ITK 4.9 would be the final
release.

Thanks,
Matt


[1] https://github.com/InsightSoftwareConsortium/ITKDevelopmentEnvironment/issues/1

[2] https://github.com/thewtex/docker-opengl

On Fri, Nov 20, 2015 at 10:49 AM, Johnson, Hans J
<hans-johnson at uiowa.edu> wrote:
> +10  ? That is not a typo.  Really +10.
>
> The slicer extensions framework is one of many improved solutions over fltk apps.
> Heck? many of the demo apps could be easily re-written in SimpleITK with ipython notebook widgets.
>
> Hans
>
>
> On 11/20/15, 9:29 AM, "Insight-developers on behalf of Bill Lorensen" <insight-developers-bounces at itk.org on behalf of bill.lorensen at gmail.com> wrote:
>
>>Folks,
>>
>>ITKApps contains applications written a long time ago. We as a group
>>have been patching the apps, fixing compile errors as ITK and VTK
>>api's change.
>>
>>Also, many of the apps use an old version of FLTK as a gui.
>>
>>I think the maintenance cost is too much for these old applications.
>>
>>We should consider freezing it at VTK5.10 and the last ITK version
>>that works with it.
>>
>>As Matt has mentioned there are several modern apps like slicer and
>>SNAP that can provide users with a better experience.
>>
>>Thoughts?
>>
>>Bill
>>
>>--
>>Unpaid intern in BillsBasement at noware dot com
>>_______________________________________________
>>Powered by www.kitware.com
>>
>>Visit other Kitware open-source projects at
>>http://www.kitware.com/opensource/opensource.html
>>
>>Kitware offers ITK Training Courses, for more information visit:
>>http://kitware.com/products/protraining.php
>>
>>Please keep messages on-topic and check the ITK FAQ at:
>>http://www.itk.org/Wiki/ITK_FAQ
>>
>>Follow this link to subscribe/unsubscribe:
>>http://public.kitware.com/mailman/listinfo/insight-developers
>
>
> ________________________________
> Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is confidential and may be legally privileged.  If you are not the intended recipient, you are hereby notified that any retention, dissemination, distribution, or copying of this communication is strictly prohibited.  Please reply to the sender that you have received the message in error, then delete it.  Thank you.
> ________________________________
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From seun at rogue-research.com  Fri Nov 20 12:48:15 2015
From: seun at rogue-research.com (Seun Odutola)
Date: Fri, 20 Nov 2015 12:48:15 -0500
Subject: [ITK] [ITK-dev] Unexpected Voxel Size difference between ITK3 & ITK4
Message-ID: <A112B7ED-4A30-423F-BD44-4EB0EC183F60@rogue-research.com>

Hello everyone,

       I have got this problem when reading a Minc2 file. I?m currently on the verge of completing the transition of ITK 3 to ITK 4 but realized on testing some of our minc2 files (Unit test) which previously passed in 3 seem to fail in 4. On further investigation of both codes (ITK 3 & 4) I noticed the reason for this failure was that for example reading a specific file I was expecting the Component Type returned to be SHORT whereas I was getting FLOAT.

Note: am running ITK git master

// snippet

// In ITK 4 (ITK git master)
// ITK file name : itkMINCImageIO.cxx
// function -> ReadImageInformation
// Minc2 test file :  mni_icbm152_t1_tal_nlin_asym_09c.mnc

// set the file data type
  if(slice_scaling_flag || global_scaling_flag)
    {
    switch ( volume_data_type )
      {
      case MI_TYPE_FLOAT:
        this->SetComponentType(FLOAT);
        break;
      case MI_TYPE_DOUBLE:
        this->SetComponentType(DOUBLE);
        break;
      case MI_TYPE_FCOMPLEX:
        this->SetComponentType(FLOAT);
        break;
      case MI_TYPE_DCOMPLEX:
        this->SetComponentType(DOUBLE);
        break;
      default:
        this->SetComponentType(FLOAT);
        break;
      } //end of switch
        //file will have do
    }
  else


// In ITK 3 (3.20.1)
// ITK file name : itkMINC2ImageIO.cxx
// function -> ReadImageInformation
// Minc2 test file :  mni_icbm152_t1_tal_nlin_asym_09c.mnc

// lines 397 onwards
// set the file data type
  switch (volume_data_type)
    {
    case MI_TYPE_BYTE:
      this->SetComponentType(CHAR);
      break;
    case MI_TYPE_UBYTE:
      this->SetComponentType(UCHAR);
      break;
    case MI_TYPE_SHORT:
      this->SetComponentType(SHORT);
      break;
    case MI_TYPE_USHORT:
      this->SetComponentType(USHORT);
      break;
    case MI_TYPE_INT:
      this->SetComponentType(INT);
      break;
    case MI_TYPE_UINT:
      this->SetComponentType(UINT);
      break;
    case MI_TYPE_FLOAT:
      this->SetComponentType(FLOAT);
      break;
    case MI_TYPE_DOUBLE:
      this->SetComponentType(DOUBLE);
      break;
    case MI_TYPE_SCOMPLEX:
      this->SetComponentType(SHORT);
      break;
    case MI_TYPE_ICOMPLEX:
      this->SetComponentType(INT);
      break;
    case MI_TYPE_FCOMPLEX:
      this->SetComponentType(FLOAT);
      break;
    case MI_TYPE_DCOMPLEX:
      this->SetComponentType(DOUBLE);
      break;
    default:
      itkDebugMacro("Bad data type ");
      return;
    } //end of switch


Note that in ITK 3 the slice_scaling_flag is set to way above the snippet but is never used as a condition for setting the ComponentType so in my case I get back the SHORT I was expecting whereas in ITK 4 (see code above) the slice_scaling_flag is always set to 1 and the ComponentType is redefined as FLOAT which isn?t what I?m expecting. Lastly, I have also confirmed that indeed it?s expected to be a SHORT not FLOAT by using Minc Info to examine the above file named test file. So my question is could this have been a mistake in ITK 4 which means the way ITK 3 went about handling the file was correct or could it have been the other way around.

Thanks 

Regards,
   Seun



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From sepideh.movaghati at gmail.com  Sat Nov 21 20:47:06 2015
From: sepideh.movaghati at gmail.com (Sepideh's Gmail)
Date: Sat, 21 Nov 2015 20:47:06 -0500
Subject: [ITK] [ITK-users] Error in itk::BinaryMask3DMeshSource when using
	Mesh	with arbitrary CellDataType
Message-ID: <8BA343D7-D6C1-4616-8D75-5830A335FC84@gmail.com>

Hello, 

I am facing a problem working with itk::Mesh objects. This class is templated on the TMeshTrait which itself is templated on TCellPixelType. 
Since I can define an arbitrary Cell/PointDataType for my mesh, I created an itk::Mesh with CellDataType being std::pair<int,int> without any problem.
However, when I tried to use my mesh type as the OutputMeshType of itk::BinaryMask3DMeshSource filter I got type-casting error. Looking at itkBinaryMask3DMeshSource.hxx source code, I noticed that this filter is initializing Cell data to 0.0, meaning it assumes the CellDataType to always be castable to double (which my std::pair<> type was obviously not>. 

I wonder why this filter is written in away that constrains the available flexibility in itk::Mesh type. 

Thanks for your help in advance.
Regards,
Sepide
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From arnaudgelas at gmail.com  Mon Nov 23 04:03:07 2015
From: arnaudgelas at gmail.com (Arnaud Gelas)
Date: Mon, 23 Nov 2015 10:03:07 +0100
Subject: [ITK] [ITK-users] Error in itk::BinaryMask3DMeshSource when
 using Mesh with arbitrary CellDataType
In-Reply-To: <8BA343D7-D6C1-4616-8D75-5830A335FC84@gmail.com>
References: <8BA343D7-D6C1-4616-8D75-5830A335FC84@gmail.com>
Message-ID: <5652D64B.4060307@gmail.com>

Hi Sepide,

You are right, there is no need for this filter to call SetCellData, it 
would be great if you could submit a patch to fix it!

Have a look at

     http://www.itk.org/Wiki/ITK/Git/Develop

Best,
Arnaud

On 22.11.2015 02:47, Sepideh's Gmail wrote:
> Hello,
>
> I am facing a problem working with itk::Mesh objects. This class is templated on the TMeshTrait which itself is templated on TCellPixelType.
> Since I can define an arbitrary Cell/PointDataType for my mesh, I created an itk::Mesh with CellDataType being std::pair<int,int> without any problem.
> However, when I tried to use my mesh type as the OutputMeshType of itk::BinaryMask3DMeshSource filter I got type-casting error. Looking at itkBinaryMask3DMeshSource.hxx source code, I noticed that this filter is initializing Cell data to 0.0, meaning it assumes the CellDataType to always be castable to double (which my std::pair<> type was obviously not>.
>
> I wonder why this filter is written in away that constrains the available flexibility in itk::Mesh type.
>
> Thanks for your help in advance.
> Regards,
> Sepide
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users

_____________________________________
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Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
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From fisidoro at ethz.ch  Mon Nov 23 15:38:39 2015
From: fisidoro at ethz.ch (D'Isidoro  Fabio)
Date: Mon, 23 Nov 2015 20:38:39 +0000
Subject: [ITK] [ITK-users] FW:  ITK Python wrapping
In-Reply-To: <50B858FB5F53124F9E32314E5C1B409435ACEE97@MBX212.d.ethz.ch>
References: <50B858FB5F53124F9E32314E5C1B409435ACEA2D@MBX212.d.ethz.ch>
 <CALzTN-R2_viV6Y0-AkNpmicZTOaaA98E99ReZSoWkU6tb_xuYQ@mail.gmail.com>
 <50B858FB5F53124F9E32314E5C1B409435ACEB17@MBX212.d.ethz.ch>
 <CALzTN-R3f+fi5pRze+a68d14YgLcYJPCnwwjPnz5Fm9W4hBV8A@mail.gmail.com>
 <50B858FB5F53124F9E32314E5C1B409435ACECAC@MBX212.d.ethz.ch>
 <CALzTN-SX9vduwxUSTi-XFVStWLCTYCdGccjEPy6a+XiEtH1Ryg@mail.gmail.com>
 <50B858FB5F53124F9E32314E5C1B409435ACED36@MBX212.d.ethz.ch>
 <CALzTN-SH7qnfGH_qHoXib6iVOf_W0kHnDDtVsC3oHhp7j5YEcg@mail.gmail.com>
 <50B858FB5F53124F9E32314E5C1B409435ACEE97@MBX212.d.ethz.ch>
Message-ID: <50B858FB5F53124F9E32314E5C1B409435AFE854@MBX112.d.ethz.ch>

Hi Matt,

Since my ITK with Python wrapping build on Visual Studio 2012 worked only in RELEASE mode (while not in Debug), my projects succeed to build only in Release mode (because there is no Debug folder with all the necessary compiled libraries and pyd files). That means that I cannot Debug step by step my codes with breakpoints (that works only in Debug mode in Visual Studio), and makes it impossible programming.

What's your solution?

Thank you!

----------------------------------------------------------------------
Fabio D?Isidoro
PhD Student ? Institute for Biomechanics, ETH Z?rich 
HPP O 14, Schafmattstrasse 30, 8093 Zuerich, Switzerland
Tel: +41 44 633 40 60

-----Original Message-----
From: Insight-users [mailto:insight-users-bounces at itk.org] On Behalf Of D'Isidoro Fabio
Sent: Mittwoch, 26. August 2015 16:42
To: Matt McCormick
Cc: insight-users at itk.org
Subject: Re: [ITK-users] FW: ITK Python wrapping

Hi Matt,

I did the build again and this time everything is working properly :)

As a summary of my issue: the key factor is that building ITK with Python Wrapping on Visual Studio on DEBUG mode did not produced the required *.pyd files. So in the guide you may want to remind an unexperienced Windows user that the build should be performed on RELEADE mode. My second problem was that the build did not work the first time for one of the modules.

Just to figure out how to write in python with itk: I was trying to be lucky and to run an example similar to the example ImageRegistration3.py in the Examples folder of InsightToolkit-4.8.0 (in attachment). I start the code with 'import itk'. However fixedImageReader  = itk.ImageFileReaderF2.New()' returns an error. Is this an old version and should I just write ' fixedImageReader  = itk.ImageFileReader[ImageType].New()' instead? 

Which guide should I look for figuring these things out?

Thank you for your valuable support.

-----Original Message-----
From: Matt McCormick [mailto:matt.mccormick at kitware.com] 
Sent: Dienstag, 25. August 2015 18:38
To: D'Isidoro Fabio
Cc: insight-users at itk.org
Subject: Re: FW: [ITK-users] ITK Python wrapping

Hi Fabio,

We are making good progress :-).

The build log indicates that the build did not complete correctly:

           Traceback (most recent call last):
           File
"C:/Users/difabio/ITK/InsightToolkit-4.8.0/Wrapping/Generators/SwigInterface/igenerator.py",
line 923, in <module>
             with open(options.typedef_output, "w") as f:
         IOError: [Errno 13] Permission denied:
'E:/ITK/ITK_bin_Win64_Python_Wrap/Wrapping/Typedefs/itkAffineTransformSwigInterface.h'
     1>C:\Program Files
(x86)\MSBuild\Microsoft.Cpp\v4.0\V110\Microsoft.CppCommon.targets(172,5):
error MSB6006: "cmd.exe" exited with code 1.
     1>Done Building Project
"E:\ITK\ITK_bin_Win64_Python_Wrap\Wrapping\Modules\ITKTransform\ITKTransformPython.vcxproj"
(Build target(s)) -- FAILED.

Please make sure the directory is writable, and run the build again.
Sometimes, for example, anti-virus software can interfere with a build, and it should be disabled on a build directory.

Hope this helps,
Matt

On Tue, Aug 25, 2015 at 11:25 AM, D'Isidoro  Fabio <fisidoro at ethz.ch> wrote:
> Hi Matt,
>
> Thank you. Actually I have the .dll in the bin/release.
>
> Shortly, I (redundantly) added then ITKbuild/bin, ITKbuild/bin/release, ITKbuild/lib, ITKbuild/lib/release to BOTH my PATH environmental variable and the WrapITK.pth. Still not working, however I have a new error (see attachment 'error').
>
> Therefore I went to check the ITKTransformPython module but it's not there in lib/Release where all other .lib files relative to the other modules are. I went in the directory shown in attachment 'directory' (it's in the Wrapping/Module/.. directory) and found a  log file (attachment): the build of this module failed (I check other modules and there build there did not fail). Could you please read the log? Why did just this module fail?
>
> Thank you again!
>
> -----Original Message-----
> From: Matt McCormick [mailto:matt.mccormick at kitware.com]
> Sent: Dienstag, 25. August 2015 16:31
> To: D'Isidoro Fabio; insight-users at itk.org
> Subject: Re: FW: [ITK-users] ITK Python wrapping
>
> Hi Fabio,
>
> Thanks for the updates.
>
> The apparent errors are not actual errors.  These result when CMake configuration runs (indicated by the preceding "--"), and CMake tests the availability of compiler features with try_compiles [1].  If an error occurs, then that feature is not used in the build.
>
> It is good to see that the *.pyd files are there and your Python path.
> There should still be *.dll files whose folder needs to be added to the PATH system environmental variable.  These are usually in the "bin" instead of "lib" directory. Search for a file "ITKCommon-4.8.dll" if you built ITK 4.8.
>
> Hope this helps,
> Matt
>
> PS. Please reply-to-all so conversations remain on the mailing lists.
>
> [1] http://www.cmake.org/cmake/help/v3.3/command/try_compile.html
>
> On Tue, Aug 25, 2015 at 3:02 AM, D'Isidoro  Fabio <fisidoro at ethz.ch> wrote:
>> Sorry forgot the attachments
>>
>> -----Original Message-----
>> From: D'Isidoro Fabio
>> Sent: Dienstag, 25. August 2015 09:01
>> To: 'Matt McCormick'
>> Subject: RE: [ITK-users] ITK Python wrapping
>>
>> One more thing: in the guide it's written to add to the PATH the directories containing the .dll files, suggesting ITKbuild, ITKbuild/bin and ITKbuild/bin/Release.
>>
>> However as you can see from the attachments the suggested directory has only executables, while the .lib files (I don't have .dll files) are in the ITKbuild/lib/Release (second attachment)...
>>
>> Anyway I tried to add the the ITKbuild/lib/Release directory to the PATH but it did not work either.
>>
>>
>> -----Original Message-----
>> From: Matt McCormick [mailto:matt.mccormick at kitware.com]
>> Sent: Montag, 24. August 2015 17:08
>> To: D'Isidoro Fabio
>> Cc: insight-users at itk.org
>> Subject: Re: [ITK-users] ITK Python wrapping
>>
>> Hi Fabio,
>>
>>> - Well, I have a ITKPyBasePython.pyc file in the ITK lib (and the things you told me to check are allright). So the difference is that the name has no underscore _ITKPyBasePython (as reported in the error) and the extension is pyc rather than pyd (although I have read it should not make the difference). Are those things relevant? If yes, how to correct for them? Maybe the dlls were not properly compiled so the underscore is missing?
>>
>> Both the .pyc and the .pyd files are required.
>>
>>
>>> Depending on your reply to this email, I will then try to build ITK with Python wrapping again so that I can report the compilation failures I got regarding CastXML.
>>
>> Great, thank you.  A Release build instead of a Debug build is recommended -- build size and runtime performance are greatly improved.  There is on going work to substantially decrease the wrapping build time in ITK Git master, but it is currently unstable.
>> The 4.8.0 release is recommended until that is resolved.
>>
>>
>>> About the symbolic link, I just read on the guide "ln -s /path/to/ITK-Wrapped/Wrapping/Generators/Python/WrapITK.pth" and went to find out what ln -s was ... but you are right, the guide says to copy the file, so I guess you don't have improve this part. Maybe just specifiy that there is no need to download Swig.
>>
>> Thanks for the feedback.  We will improve the wrapping process description.
>>
>>
>>> Thank you, I have spent 5 long days already with no success on this issue (which seems to me a very common issue for users willing to use the Python wrapping, from my extensive google search).
>>
>> Yes, wrapping has been difficult in the past, but things are changing.
>> With your help, it will improve even quicker :-).
>>
>>
>> Thanks,
>> Matt
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
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From matt.mccormick at kitware.com  Mon Nov 23 16:22:42 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 23 Nov 2015 16:22:42 -0500
Subject: [ITK] [ITK-users] FW: ITK Python wrapping
In-Reply-To: <50B858FB5F53124F9E32314E5C1B409435AFE854@MBX112.d.ethz.ch>
References: <50B858FB5F53124F9E32314E5C1B409435ACEA2D@MBX212.d.ethz.ch>
 <CALzTN-R2_viV6Y0-AkNpmicZTOaaA98E99ReZSoWkU6tb_xuYQ@mail.gmail.com>
 <50B858FB5F53124F9E32314E5C1B409435ACEB17@MBX212.d.ethz.ch>
 <CALzTN-R3f+fi5pRze+a68d14YgLcYJPCnwwjPnz5Fm9W4hBV8A@mail.gmail.com>
 <50B858FB5F53124F9E32314E5C1B409435ACECAC@MBX212.d.ethz.ch>
 <CALzTN-SX9vduwxUSTi-XFVStWLCTYCdGccjEPy6a+XiEtH1Ryg@mail.gmail.com>
 <50B858FB5F53124F9E32314E5C1B409435ACED36@MBX212.d.ethz.ch>
 <CALzTN-SH7qnfGH_qHoXib6iVOf_W0kHnDDtVsC3oHhp7j5YEcg@mail.gmail.com>
 <50B858FB5F53124F9E32314E5C1B409435ACEE97@MBX212.d.ethz.ch>
 <50B858FB5F53124F9E32314E5C1B409435AFE854@MBX112.d.ethz.ch>
Message-ID: <CALzTN-SLOrgf=EsFwgL1jK5_3JzasbwjCKr5_jCY97ot=c4+Kg@mail.gmail.com>

Dear Fabio,

To debug an ITK Python script, the ITK Python wrappings do not need to
be built with a Debug CMake build type -- any Python interpreter or
IDE can be used for debugging. At a basic level, the pdb Python module
gives gdb like functionality [1]. Newer versions of Visual Studio also
have better Python integration. Or, there are many other very nice
Python IDE's out there.  My personal favorite Python development and
debugging tool is IPython [2].


For ITK 4.9, the Python development guidelines in the ITK Software
Guide were improved based on your feedback in addition to other
improvements [3].  Also, the registration examples in the source tree
were updated [4] [5] [6] along with a new Sphinx example [7].

Python wrapping also builds more quickly in ITK 4.9.

The first ITK 4.9 release candidate will be announced soon, and your
testing and feedback will be appreciated.

Thanks,
Matt


[1] https://docs.python.org/3.5/library/pdb.html

[2] http://ipython.org/

[3] http://itk.org/ITKSoftwareGuide/html/Book1/ITKSoftwareGuide-Book1ch3.html#x34-410003.7

[4] https://github.com/InsightSoftwareConsortium/ITK/blob/547729e58d25692877f29938d19b2b1a8530ca86/Examples/RegistrationITKv4/ImageRegistration3.py

[5] https://github.com/InsightSoftwareConsortium/ITK/blob/547729e58d25692877f29938d19b2b1a8530ca86/Examples/RegistrationITKv4/ImageRegistration4.py

[6] https://github.com/InsightSoftwareConsortium/ITK/blob/547729e58d25692877f29938d19b2b1a8530ca86/Examples/RegistrationITKv4/ImageRegistration5.py

[7] http://itk.org/ITKExamples/src/Registration/Common/Perform2DTranslationRegistrationWithMeanSquares/Documentation.html

On Mon, Nov 23, 2015 at 3:38 PM, D'Isidoro  Fabio <fisidoro at ethz.ch> wrote:
> Hi Matt,
>
> Since my ITK with Python wrapping build on Visual Studio 2012 worked only in RELEASE mode (while not in Debug), my projects succeed to build only in Release mode (because there is no Debug folder with all the necessary compiled libraries and pyd files). That means that I cannot Debug step by step my codes with breakpoints (that works only in Debug mode in Visual Studio), and makes it impossible programming.
>
> What's your solution?
>
> Thank you!
>
> ----------------------------------------------------------------------
> Fabio D?Isidoro
> PhD Student ? Institute for Biomechanics, ETH Z?rich
> HPP O 14, Schafmattstrasse 30, 8093 Zuerich, Switzerland
> Tel: +41 44 633 40 60
>
> -----Original Message-----
> From: Insight-users [mailto:insight-users-bounces at itk.org] On Behalf Of D'Isidoro Fabio
> Sent: Mittwoch, 26. August 2015 16:42
> To: Matt McCormick
> Cc: insight-users at itk.org
> Subject: Re: [ITK-users] FW: ITK Python wrapping
>
> Hi Matt,
>
> I did the build again and this time everything is working properly :)
>
> As a summary of my issue: the key factor is that building ITK with Python Wrapping on Visual Studio on DEBUG mode did not produced the required *.pyd files. So in the guide you may want to remind an unexperienced Windows user that the build should be performed on RELEADE mode. My second problem was that the build did not work the first time for one of the modules.
>
> Just to figure out how to write in python with itk: I was trying to be lucky and to run an example similar to the example ImageRegistration3.py in the Examples folder of InsightToolkit-4.8.0 (in attachment). I start the code with 'import itk'. However fixedImageReader  = itk.ImageFileReaderF2.New()' returns an error. Is this an old version and should I just write ' fixedImageReader  = itk.ImageFileReader[ImageType].New()' instead?
>
> Which guide should I look for figuring these things out?
>
> Thank you for your valuable support.
>
> -----Original Message-----
> From: Matt McCormick [mailto:matt.mccormick at kitware.com]
> Sent: Dienstag, 25. August 2015 18:38
> To: D'Isidoro Fabio
> Cc: insight-users at itk.org
> Subject: Re: FW: [ITK-users] ITK Python wrapping
>
> Hi Fabio,
>
> We are making good progress :-).
>
> The build log indicates that the build did not complete correctly:
>
>            Traceback (most recent call last):
>            File
> "C:/Users/difabio/ITK/InsightToolkit-4.8.0/Wrapping/Generators/SwigInterface/igenerator.py",
> line 923, in <module>
>              with open(options.typedef_output, "w") as f:
>          IOError: [Errno 13] Permission denied:
> 'E:/ITK/ITK_bin_Win64_Python_Wrap/Wrapping/Typedefs/itkAffineTransformSwigInterface.h'
>      1>C:\Program Files
> (x86)\MSBuild\Microsoft.Cpp\v4.0\V110\Microsoft.CppCommon.targets(172,5):
> error MSB6006: "cmd.exe" exited with code 1.
>      1>Done Building Project
> "E:\ITK\ITK_bin_Win64_Python_Wrap\Wrapping\Modules\ITKTransform\ITKTransformPython.vcxproj"
> (Build target(s)) -- FAILED.
>
> Please make sure the directory is writable, and run the build again.
> Sometimes, for example, anti-virus software can interfere with a build, and it should be disabled on a build directory.
>
> Hope this helps,
> Matt
>
> On Tue, Aug 25, 2015 at 11:25 AM, D'Isidoro  Fabio <fisidoro at ethz.ch> wrote:
>> Hi Matt,
>>
>> Thank you. Actually I have the .dll in the bin/release.
>>
>> Shortly, I (redundantly) added then ITKbuild/bin, ITKbuild/bin/release, ITKbuild/lib, ITKbuild/lib/release to BOTH my PATH environmental variable and the WrapITK.pth. Still not working, however I have a new error (see attachment 'error').
>>
>> Therefore I went to check the ITKTransformPython module but it's not there in lib/Release where all other .lib files relative to the other modules are. I went in the directory shown in attachment 'directory' (it's in the Wrapping/Module/.. directory) and found a  log file (attachment): the build of this module failed (I check other modules and there build there did not fail). Could you please read the log? Why did just this module fail?
>>
>> Thank you again!
>>
>> -----Original Message-----
>> From: Matt McCormick [mailto:matt.mccormick at kitware.com]
>> Sent: Dienstag, 25. August 2015 16:31
>> To: D'Isidoro Fabio; insight-users at itk.org
>> Subject: Re: FW: [ITK-users] ITK Python wrapping
>>
>> Hi Fabio,
>>
>> Thanks for the updates.
>>
>> The apparent errors are not actual errors.  These result when CMake configuration runs (indicated by the preceding "--"), and CMake tests the availability of compiler features with try_compiles [1].  If an error occurs, then that feature is not used in the build.
>>
>> It is good to see that the *.pyd files are there and your Python path.
>> There should still be *.dll files whose folder needs to be added to the PATH system environmental variable.  These are usually in the "bin" instead of "lib" directory. Search for a file "ITKCommon-4.8.dll" if you built ITK 4.8.
>>
>> Hope this helps,
>> Matt
>>
>> PS. Please reply-to-all so conversations remain on the mailing lists.
>>
>> [1] http://www.cmake.org/cmake/help/v3.3/command/try_compile.html
>>
>> On Tue, Aug 25, 2015 at 3:02 AM, D'Isidoro  Fabio <fisidoro at ethz.ch> wrote:
>>> Sorry forgot the attachments
>>>
>>> -----Original Message-----
>>> From: D'Isidoro Fabio
>>> Sent: Dienstag, 25. August 2015 09:01
>>> To: 'Matt McCormick'
>>> Subject: RE: [ITK-users] ITK Python wrapping
>>>
>>> One more thing: in the guide it's written to add to the PATH the directories containing the .dll files, suggesting ITKbuild, ITKbuild/bin and ITKbuild/bin/Release.
>>>
>>> However as you can see from the attachments the suggested directory has only executables, while the .lib files (I don't have .dll files) are in the ITKbuild/lib/Release (second attachment)...
>>>
>>> Anyway I tried to add the the ITKbuild/lib/Release directory to the PATH but it did not work either.
>>>
>>>
>>> -----Original Message-----
>>> From: Matt McCormick [mailto:matt.mccormick at kitware.com]
>>> Sent: Montag, 24. August 2015 17:08
>>> To: D'Isidoro Fabio
>>> Cc: insight-users at itk.org
>>> Subject: Re: [ITK-users] ITK Python wrapping
>>>
>>> Hi Fabio,
>>>
>>>> - Well, I have a ITKPyBasePython.pyc file in the ITK lib (and the things you told me to check are allright). So the difference is that the name has no underscore _ITKPyBasePython (as reported in the error) and the extension is pyc rather than pyd (although I have read it should not make the difference). Are those things relevant? If yes, how to correct for them? Maybe the dlls were not properly compiled so the underscore is missing?
>>>
>>> Both the .pyc and the .pyd files are required.
>>>
>>>
>>>> Depending on your reply to this email, I will then try to build ITK with Python wrapping again so that I can report the compilation failures I got regarding CastXML.
>>>
>>> Great, thank you.  A Release build instead of a Debug build is recommended -- build size and runtime performance are greatly improved.  There is on going work to substantially decrease the wrapping build time in ITK Git master, but it is currently unstable.
>>> The 4.8.0 release is recommended until that is resolved.
>>>
>>>
>>>> About the symbolic link, I just read on the guide "ln -s /path/to/ITK-Wrapped/Wrapping/Generators/Python/WrapITK.pth" and went to find out what ln -s was ... but you are right, the guide says to copy the file, so I guess you don't have improve this part. Maybe just specifiy that there is no need to download Swig.
>>>
>>> Thanks for the feedback.  We will improve the wrapping process description.
>>>
>>>
>>>> Thank you, I have spent 5 long days already with no success on this issue (which seems to me a very common issue for users willing to use the Python wrapping, from my extensive google search).
>>>
>>> Yes, wrapping has been difficult in the past, but things are changing.
>>> With your help, it will improve even quicker :-).
>>>
>>>
>>> Thanks,
>>> Matt
_____________________________________
Powered by www.kitware.com

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From matt.mccormick at kitware.com  Mon Nov 23 17:53:15 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 23 Nov 2015 17:53:15 -0500
Subject: [ITK] [ANN] ITK 4.9 Release Candidate 1 is ready for testing!
Message-ID: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>

On behalf of the Insight Toolkit community, we are proud to announce that
ITK 4.9 release candidate 1 has been tagged and is available for testing!

Please take this opportunity to test the new features in the release
candidate.


To obtain the source code,

  git clone http://itk.org/ITK.git
 cd ITK
 git checkout -q --detach v4.9rc01

For more details, please see the Git documentation [1].


A few selected highlights for this release:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* New Remote modules: the Cuberille module for smooth generation of meshes
from binary segmentation images, and the AnisotropicDiffusionLBR module
improved edge-preserving smoothing.
* Build your own ITK module outside the source tree, add continuous
integration testing on GitHub, and easily add Python wrapping for your C++
algorithms.
* Python wrapping, including Python 3, builds faster with a more standard
installation
* Improved performance of itk::Image::GetPixel and operations on
itk::VariableLengthVector?s
* Generate a FlatStructuringElement from an image
* Point-set registration with time-varying B-splines
* Module dependencies can now be specified as public / private / compile /
test


Please test the release candidate and share your experiences on the mailing
list, issue tracker, and Gerrit Code Review. The new module dependency
specification mechanism may unearth missing dependencies for projects that
use ITK COMPONENTS with the CMake find_package command.


An Experimental build, which demonstrates how the test suite performs on
your local build system, can be submitted to the dashboard [2] with:

  mkdir ../ITK-build
  cd ../ITK-build
  cmake ../ITK
  ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit

Visual Studio builds must also add ?-C Release? to the ctest command.

Notify the mailing list if there are any unexpected failures.  Testing your
own applications against the RC is also appreciated.


Congratulations and well done to the 35 contributors to this release. We
would especially like to recognize the new contributors: Mikhail Isakov,
Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun Odutola,
Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson, Luc
Hermitte, Laurentiu Nicola, and Floris Berendsen.


The final release is scheduled for mid-December.


[1] http://www.itk.org/Wiki/ITK/Git

[2] http://open.cdash.org/index.php?project=Insight



New Features
---------------------

Wrapping improvements
^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* Python 3 supported
* Wrapping builds much faster due to CastXML binaries
* LandmarkBasedTransformInitializer now wrapped
* NumPy bridge with VisualStudio
* Wrapping for the MinimalPathExtraction module
* Wrapping is now installed into Python?s site-packages directory in the
?itk? package
* Wrapping package size is decreased
* Better package portability on Mac OSX


New Remote Modules
^^^^^^^^^^^^^^^^^^^^^^^^^^

* Cuberille
   * Insight Journal Article: http://hdl.handle.net/10380/3186
* AnisotropicDiffusionLBR
   * Insight Journal Article: http://hdl.handle.net/10380/3505
   * Web browser reproducibility: http://www.kitware.com/blog/home/post/942


Core Improvements
^^^^^^^^^^^^^^^^^^^^^^^

* External Modules can now be developed outside of the ITK source tree and
on GitHub
   * Details: http://www.kitware.com/blog/home/post/997
* New utilities in itk::Math:
   * AlmostEquals
   * NotAlmostEquals
   * ExactlyEquals
   * NotExactlyEquals
* New itk::NumericTraits
   * IsInteger
   * IsSigned
* Improved C++11 support
   * New ITK_DELETE_FUNCTION macro for ?=delete?
   * New ITK_NOEXCEPT macro for the ?noexcept? keyword
* Improved capabilities of itk::ResourceProbe and
itk::ResourceProbesCollectorBase
* Improve numerical stability in VNL eigen system estimation
* itksys_ios:: and itksys_stl:: have been remove (use std::)


Filtering Improvements
^^^^^^^^^^^^^^^^^^^^^^^^^^^

* Generate a FlatStructuringElement from an image
* WarpImageFilter support VectorImage?s
* ConvertLabelMap supports different LabelMap types
* ImageToPathFilter moved from the ITKReview to the ITKPath module
* itk::MovingHistogramImageFilter moved to the ITKImageFilterBase module


Registration Improvements
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* Point-set registration with time-varying B-splines


Build Improvements
^^^^^^^^^^^^^^^^^^^^^^^^

* Module dependencies can now be specified as public / private / compile /
test
* BUILD_EXAMPLES CMake option is now OFF by default
* Option to export all library symbols on Windows:
   * Details: http://www.kitware.com/blog/home/post/939
* Expat third party library is now name mangled
* Many more modules can be built as shared libraries
* KWStyle is automatically built and configured when tests are built


Performance Improvements
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* New MetaProgrammingLibrary namespace (itk::mpl) holds members for
metaprogramming
   * itk::mpl::{TrueType,FalseType}
   * itk::mpl::{If,Not,And,Or,Xor}
   * itk::mpl::EnableIf
   * itk::mpl::IsBaseOf
   * itk::mpl::IsConvertible
   * itk::mpl::IsNumber
   * itk::mpl::IsSame
   * itk::mpl::PromoteType
* Image::GetPixel performance improvements
* Many itk::VariableLengthVector performance improvements
* AdaptiveHistogramEqualization uses a moving histogram
* WarpImageFilter performance improvements


Documentation Improvements
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
* ITK Software Guide improvements
   * How to use Python wrapping
   * How to create an ITK module
   * Improvements to segmentation examples
   * Expanded Canny edge detection example
   * Expanded tree container example


Third Party Library Updates
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* FFTW updated to latest upstream
* Build with recent OpenCV 2 and 3
* Build with the latest VTK
* PNG update to the latest upstream
* GDCM updated to the latest upstream
* KWSys updated to the latest upstream
* MINC updated to the latest upstream
* SWIG updated to the latest upstream
* Third party PNG and MINC are now Git subtrees


Style improvements -- ITK gets more stylish with every release!
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

* Private copy constructors and operator= use ITK_DELETE_FUNCTION


Improved code coverage -- we are at 84.9%!
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^


* *Lots* of important bug fixes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^


* And much more! See details in the log below.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^



Changes from v4.8.0..v4.9rc01
--------------------------------------------


Abhishek Tiwari (1):
     BUG: "tmpImageIndex" not initialized to 0.

Adam Snyder (1):
     PERF: Reworked MMI Threading using a per-thread buffer

Alexander Leinoff (6):
     ENH: Adds IsInteger and IsSigned to NumericTraits.
     COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
     ENH: Adds ExactlyEquals and NotExactlyEquals functions to itkMath.h
     COMP: Removes floating-point equality checks
     ENH: COMP: Adds support for complex values to Math::AlmostEquals
     ENH: Updates fftw dependency

Arnaud Gelas (5):
     COMP: fix warning (unused local typedef)
     COMP: simplify ITKVideoBridgeOpenCV dependency
     DOC: add doxgen documentation for BinaryImageToLevelSetImageAdaptor
     ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
     COMP: fix compilation error with OpenCV2 and OpenCV3

Betsy McPhail (1):
     BUG: Improve buffer alignment in OctreeNode .

Bill Hoffman (2):
     ENH: Use new CMake Windows export symbol dll feature.
     COMP: Put vnl_export.h in the list of sources so it gets installed.

Bill Lorensen (4):
     COMP: VTkGlue linker errors
     BUG: Inappropriate use of AlmostEquals
     ENH: Bump tag for wiki examples
     ENH: Better layout strategy

Brad King (3):
     ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
     ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
     ENH: Update CMake Policy settings in Testing/TestExternal project

Bradley Lowekamp (31):
     BUG: Avoid null deference in PrintSelf with default construction
     ENH: Enable base classes for templates of landmark initializer
     STYLE: Use "Swap" for ITK member name
     BUG: Demonstrate Eigen analysis failure
     BUG: Fix computation of Eigen analysis
     ENH: Update DiscreteHessianGaussian Test baseline
     ENH: Correctly demonstrate float point Eigen failure
     ENH: compile vnl_math_hypot, and use at least double
     ENH: Adding initial update script from used libpng version.
     ENH: removing non-subtree files for itkpng
     ENH: Ported ITK changes for building to subtree merged code
     ENH: Update libpng update script for v1.6.9
     BUG: Use ParameterValueType for computation of landmark affine
     ENH: Wrap LandmarkBasedTransformInitializer
     BUG: Avoid potential exception in itk::Object::UnRegister
     ENH: Update itkpng zlib, configuration, and rename
     ENH: Update itkpng name mangling
     BUG: Use const pointer in Set method for constant ReferenceImage ivar
     BUG: Increase tolerance for PhysicsBasedNonRigidRegistrationMethod
     BUG: Demonstrate side effect on registration due to BSplineScatter
change
     ENH: Move MovingHistogramImageFilter base classes to ImageFilterBase
     BUG: Avoid potential exception in itk::Object::UnRegister
     BUG: Avoid null deference in PrintSelf with default construction
     BUG: Use const pointer in Set method for constant ReferenceImage ivar
     ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram base
     COMP: address sign unsigned comparison warning
     COMP: Address signed unsigned comparison warning
     COMP: Address unused member variable and methods in anonymous ns
     BUG: Fix segfault when with empty IsolatedWatershed Threshold range
     BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
     BUG: Reduce number of targets with MSVC

Davis Vigneault (7):
     DOC: Minor improvements to segmentation examples.
     DOC: Expanded Canny Edge Detection Example
     DOC: Expanded TreeContainer Example
     COMP: Warnings in itkVTKImageExport when compiling with c++11
     COMP: Warnings in FFTW Classes when compiling with c++11
     COMP: Update Git Tag for Subdivision Module
     COMP: Warnings in FFTW Classes when compiling with c++11

D?enan Zuki? (1):
     STYLE: better formatting of the "usage" message

Eugene Prilepin (1):
     BUG: Fix a template name formation in python wrappings

Floris Berendsen (1):
     STYLE: Improve naming conventions in comments.

Hans Johnson (29):
     STYLE: Instrument for FixedParameters typedef
     BUG: Demonstrate DisplacementTransformFailure
     BUG: FixedParameters should be double precision
     STYLE: Minor code style issues for MGHIO
     COMP: Update to version for WikiExamples
     ENH: Update Sphinx for ITK 4.8.0
     ENH: Update MGHIO to be shared lib
     ENH: Provide consistent floating point comparisons
     BUG: Fix MGHIO to fix write failures
     PERF: Remove floating point as sentinal value
     COMP: Const correctness needs to be maintained
     BUG: Preserve backwards compatibility
     DOC: Provide consistent naming in comments
     ENH: Conversion between transform type tolerance
     STYLE: Prefer initialization to assignment
     ENH: Missing ITK_OVERRIDE
     COMP: Need to propagate ITKGDCM
     COMP: Need to propagate ITKGDCM
     COMP: Add missing ITK_OVERRIDE
     STYLE: Minor code style issues for MGHIO
     COMP: Update to version for WikiExamples
     ENH: Update Sphinx for ITK 4.8.0
     ENH: Update MGHIO to be shared lib
     BUG: Fix MGHIO to fix write failures
     ENH: C++11 allows for rigorous =delete
     COMP: Remove unnecessary failing assert test
     ENH: Ignore internal files for the Clion editor
     COMP: Fix VNL compilation for wider C++11 support
     BUG: In configuration test need to mirror code

Hyun Jae Kang (27):
     BUG: Remove std::cout calls from class
     BUG: Avoid an unexpected output of static_cast
     BUG: Update python example codes for ImageRegistration
     BUG: Retrieve the missed wrap file
     BUG: itkVTKImageIO class does not handle blank lines in VTK file
header.
     BUG: Fix HDF5 CMake configuration with VS2015
     BUG: Fix a compilation issue on ITK4 with FFTW and shared libraries
     BUG: Fixed older XCode linking error
     ENH: Use CastXML binaries when building with x86_64 Mac OS X
     BUG: Remove std::cout calls from class
     BUG: itkVTKImageIO class does not handle blank lines in VTK file
header.
     BUG: Fixed older XCode linking error
     ENH: Add automatic KWStyle build and configuration setup
     COMP: KWStyle shadow, format-nonliteral and autological-compare
warning.
     COMP: Fixed the warning messages from itkGPU Module
     COMP: Fixed a warning message of unused-private-field
     COMP: Apply latest version of KWStyle
     COMP: Update KWStyle to fix its additional warning messages
     COMP: Update KWStyle to fix its additional warning messages
     COMP: Fix data-conversion warning messages on Windows
     ENH: Update itkResourceProbe to calculate statistical data
     COMP: Fix data-conversion warning messages on VS14
     COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
     ENH: Update the Report() function of itkResourceProbesCollectorBase
     COMP: Fix data-conversion warning message on itkResourceProbe
     COMP: Fix additional warning messages of KWStyle
     COMP: Fix data-conversion warning messages

Jon Haitz Legarreta (6):
     ENH: Add test for itkStatisticsUniqueLabelMapFilter
     BUG: Fix compilation issues for StatisticsUniqueLabelMapFilterTest
     BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
     BUG: Test for StatisticsUniqueLabelMapFilter stability
     ENH: Add test for itkParametricStpaceToImageSpaceFilter
     ENH: Improve code coverage for itkParametricSpaceToImageSpaceMeshFilter

Julien Michel (1):
     ENH: Support of VectorImage as template parameters for WarpImageFilter

Junjie Bai (2):
     BUG: ConvertLabelMap with different LabelMapTypes
     BUG: LabelObject CopyAttribute support different LabelObject type

KWSys Robot (4):
     KWSys 2015-07-10 (c9336bcf)
     KWSys 2015-07-30 (f63febb7)
     KWSys 2015-08-24 (cdaf522c)
     KWSys 2015-08-28 (dc3fdd7f)

LIBPNG Upstream (2):
     PNG 2009-04-06 (e68f5a36)
     PNG 2014-02-05 (3e753eb8)

Laurentiu Nicola (2):
     PERF: Avoid temporary smartptr in ProcessObject::GetInput
     PERF: Optimize WarpImageFilter by avoiding refcount bouncing

Luc Hermitte (8):
     PERF: itk::Image::GetPixel() performance improvment.
     PERF: Performance enhancements on VariableLengthVectors 1/...
     ENH: Dependencies on itkVariableLengthVector.h reduced
     BUG: Error in VariableLengthVector Unit Tests
     PERF: Performance enhancements on VLV 2/...
     PERF: Performances enhancements on VLV 3/...
     COMP: Fix signed/unsigned warnings
     BUG: std::copy/fill on empty VLV

Lucas Gandel (4):
     ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
     BUG: Fixing ImageToPathFilter wrapping call from Review Module
     STYLE: Fix KWStyle dashboard errors
     BUG: Fix external module BUILD_SHARED_LIBS status

Mathieu Malaterre (1):
     BUG: Name mangle the included expat third party library.

Matthew McCormick (94):
     ENH: Change itkSystemInformationTest to itkCMakeConfigurationTest.
     ENH: Add AnisotropicDiffusionLBR Remote Module.
     ENH: Bump ITK version to 4.9.0.
     BUG: Remove std::cout calls from classes.
     COMP: Remove unused argument in ConditionVariableNoThreads.
     BUG: Implement UpdateLargestPossibleRegion for ImageToVTKImageFilter.
     COMP: Add link interface specification for wrapping
target_link_libraries.
     STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
     COMP: Fix MINCTransformIO factory registration.
     COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
     COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
     BUG: Initialize mutex for 32 bit AtomicInt.
     ENH: Use CastXML binaries when building with x86_64 Linux.
     STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
     COMP: Disable the gold linker for static builds on Ubuntu 14.04.
     ENH: Use Windows binaries for CastXML.
     ENH: Add better scoping in igenerator.py.
     BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
     BUG: LevelSetsv4 used signed char instead of char.
     ENH: Add better scoping to idx.py.
     COMP: Define newSize and oldSize in VariableLengthVector.
     STYLE: Use prefix increment operator in ImageBase.
     DOC: Correct spelling of Continuous.
     ENH: Add more progress information to IterativeClosestPoint2.
     BUG: Build BridgeNumPy with Visual Studio.
     ENH: Add ITKModuleExternal.cmake
     COMP: Wrap Image< bool, D > for FlatStructuringElement.
     BUG: Use CastXML binary built in Release.
     BUG: ContinuousIndex should not be templated over TCoordRep.
     COMP: Set CMP0054 to new.
     COMP: Address line length too long for Software Guide.
     COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
     BUG: Support Python 3 wrapping module initialization.
     BUG: Update itkTemplate.py for Python 3.
     BUG: Update itkExtras.py for Python 3.
     BUG: Prevent Python callback addition recursion.
     BUG: Fix test scripts for Python 3.
     BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
     ENH: Allow projects to build against an external module.
     ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
     ENH: Rename _cable_ to _wrappers_.
     BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
     BUG: Define ITK_WRAPPING_PARSER when wrapping.
     COMP: Do not use C++11 alignas in itkAlignedTypedef.
     ENH: Bump CMakeLists.txt version to 4.8.1.
     BUG: Pass the CMAKE_CXX_FLAGS to castxml.
     ENH: Bump CastXML version to 2015-30-29.
     ENH: Bump LLVM / Clang to 3.7.0.
     COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
     COMP: Add missing ITKIOImageBase dependency for ITKTransformMINC.
     COMP: Use itkSimpleNewMacro in ThreadedIteratorRangePartitionerTest.
     ENH: Add wrapping support for building modules externally.
     BUG: Fix KWStyle test paths when building a module externally.
     ENH: Add Cuberille Remote module.
     COMP: Remove carriage returns from Cuberille remote.
     COMP: Remove unused argument in ConditionVariableNoThreads.
     DOC: Correct spelling of Continuous.
     ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
     COMP: Fix KernelTransform SetFixedParameters argument type.
     STYLE: Use prefix increment operator in ImageBase.
     COMP: Use ITK's pygccxml by correctly setting up the sys.path
     Revert "COMP: Put vnl_export.h in the list of sources so it gets
installed."
     BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
     ENH: Marking wrapping CMake configuration variables as advanced.
     STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
     COMP: Non-virtual copy attribute members in LabelMap cannot have
override.
     COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
     COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
     ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
     BUG: Improve KWStyle ExternalProject utilization.
     ENH: Remove old KWStyle build script.
     COMP: Address VariableLengthVector Doxygen rhs @param not found.
     ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
     ENH: Install Python bindings into site-packages.
     ENH: Improve readability of Python site-packages path detection.
     COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
warning.
     BUG: ITKCommon publically depends on ITKDoubleConversion.
     COMP: Improve scoping in CovariantVectorGeometryTest.
     ENH: Improves names and export of module dependencies.
     STYLE: Improve namespace bracket style in itkIsConvertible.
     COMP: Set CMP0054 to new.
     BUG: Remove unused wrapping files.
     BUG: Do install install wrapping development files.
     ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
     BUG: Remove duplicate inclusion of wrapping submodules.
     COMP: Do not use C++ style comments for Doxygen cond.
     BUG: Fix detection of the gold linker.
     BUG: Update Python package installation locations.
     ENH: Bump CMakeLists.txt version to 4.8.2.
     ENH: Change BUILD_EXAMPLES default to OFF.
     BUG: Use 'from itk import ITKCommon' in module2module test.
     COMP: Link to VTK Python when built with Kits support.
     BUG: Install itk_minc2.h header.
     COMP: ITKIOMINC has a public dependency on ITKIOImageBase.

Michka Popoff (9):
     ENH: Update to swig 3.0.7
     ENH: Do not link against specific Python library on OS X
     COMP: Fix wrapping warnings when building with ITK_WRAP_IMAGE_DIMS=2
     COMP: Add missing wrapping for TransformBase
     COMP: Use ITK's pygccxml by correctly setting up the sys.path
     COMP: Disable incompatible modules when using Python 3 wrapping
     COMP: Move MovingHistogramImageFilterBase wrapping to ImageFilterBase
module
     COMP: Disable incompatible modules when using Python 3 wrapping
     ENH: Allow operations on Indexes and Offsets in Python

Mikhail Isakov (1):
     BUG: DiffusionTensor3DReconstruction segfault if no baseline image

Nick Tustison (5):
     BUG:  Set a default b-spline epsilon.
     ENH: Adding testing for closed loop.
     BUG:  Updating B-spline classes with the same epsilon strategy.
     PERF:  Switch vnl_vectors for fixed arrays.
     ENH:  Point-set registration with time-varying B-spline.

Olivier Commowick (3):
     BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen system
     BUG: Correct under/overflows in vnl_math_hypot (taken from pythag from
V3P)
     BUG: Switch eigenvalues computation to double

Pablo Hernandez-Cerdan (2):
     ENH: Help class for itkFlatStructuringElement with constructor from
images.
     COMP: Fix test errors and warnings in FlatStructuringElement.

Seun Odutola (1):
     COMP: Fixed name clash with Apple header (check Macro), renamed check
to Check

Shawn Waldon (1):
     COMP: Set target OS X version in environment for tools using compiler

Simon Alexander (1):
     BUG: incorrect closest point computation

Tobias Wood (2):
     BUG: LBFGSB was printing messages even with debug switched off.
     BUG: Removed an unguarded print statement.

Vladimir S. FONOV (9):
     BUG: Missing ITKIOMINC_EXPORT on __Private()
     COMP: Changing the order of HDF5 library components
     COMP: Splitting up IOMINC module into two parts: MINC and Transform
     STYLE: updated comments to properly reference LIBMINC
     ENH: Add script to merge upstream MINC as a subtree
     MINC 2015-07-23 (c033d431)
     COMP: Update MINC CMake code
     MINC 2015-08-18 (6d7e3ba8)
     MINC 2015-09-13 (95cd5374)

Xiaoxiao Liu (1):
     DOC: update email address for xiaoxiao.

Zach Williamson (10):
     BUG: Use correct libraries for ImageFusion tests
     ENH: Consolidate Library Dependencies
     COMP: Add a missing link to Review module
     COMP: Use correct linking macro in DCMTK
     BUG: Use correct libraries for TestKernel tests
     COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
     ENH: Use new linking system macros
     PERF: Avoid searching private dependencies for include directories
     COMP: Recover missing dependencies
     ENH: use new linking macros in Filtering module



-----------------------------------------------------
Errors or omissions? Please fix them here:

https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
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From zeinsalah at gmail.com  Tue Nov 24 04:49:40 2015
From: zeinsalah at gmail.com (Zein Salah)
Date: Tue, 24 Nov 2015 10:49:40 +0100
Subject: [ITK] PET-CT importing in ITK
Message-ID: <CADiSopPMjYMKXStb6hw83N0gD=u8O1PFkwk3dpxZ7e6wF3TA=Q@mail.gmail.com>

Hi,

I have some PET-CT datasets that I can open, e.g., using DicomWorks.
Is is actually possible to import such data in ITK? I would like to be able
to load PET and CT data separately. Is there an example
for this?

Much thanks,
Zien

From lsustc at mail.ustc.edu.cn  Tue Nov 24 04:17:53 2015
From: lsustc at mail.ustc.edu.cn (Ais)
Date: Tue, 24 Nov 2015 02:17:53 -0700 (MST)
Subject: [ITK] [ITK-users] DicomSeriesReadImageWrite2.cxx
Message-ID: <1448356673777-36489.post@n7.nabble.com>

 Dear Users,
       I have built the project
InsightToolkit-4.8.0\Examples\IODicomSeriesReadImageWrite2.cxx, I read a 
dicom series and generate a .img/hdr format 3D image,   but the 3D image is
flipped, what's the reason? 



--
View this message in context: http://itk-users.7.n7.nabble.com/ITK-users-DicomSeriesReadImageWrite2-cxx-tp36489.html
Sent from the ITK - Users mailing list archive at Nabble.com.
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From goretzki.imre at gmail.com  Tue Nov 24 05:44:39 2015
From: goretzki.imre at gmail.com (Imre Goretzki)
Date: Tue, 24 Nov 2015 11:44:39 +0100
Subject: [ITK] Please fix RegionGrowingSegmentation Homepage
In-Reply-To: <564F3B26.1020003@gmail.com>
References: <mailman.0.1448031163.1645.community@itk.org>
 <564F3B26.1020003@gmail.com>
Message-ID: <56543F97.3030508@gmail.com>

Hey guys,

could you re-add the image /RegionGrowingSegmentationImageSequence.jpg/ in

http://www.itk.org/ITK/applications/RegionGrowingSegmentation.html

The link is broken. I guess it would be nice, if it were avaible again.

Thanks
Imre
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From matt.mccormick at kitware.com  Tue Nov 24 05:47:07 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 24 Nov 2015 05:47:07 -0500
Subject: [ITK] [ITK-users] PET-CT importing in ITK
In-Reply-To: <CADiSopPMjYMKXStb6hw83N0gD=u8O1PFkwk3dpxZ7e6wF3TA=Q@mail.gmail.com>
References: <CADiSopPMjYMKXStb6hw83N0gD=u8O1PFkwk3dpxZ7e6wF3TA=Q@mail.gmail.com>
Message-ID: <CALzTN-SorAJj0pEg5+OT+vyg=uXUmBq1bLBFtf++6_SKmooUMg@mail.gmail.com>

Hi Zein,

Yes, ITK can read DICOM files.  See this example:


http://www.itk.org/Doxygen/html/Examples_2IO_2DicomSeriesReadImageWrite2_8cxx-example.html

HTH,
Matt

On Tue, Nov 24, 2015 at 4:49 AM, Zein Salah <zeinsalah at gmail.com> wrote:

> Hi,
>
> I have some PET-CT datasets that I can open, e.g., using DicomWorks.
> Is is actually possible to import such data in ITK? I would like to be able
> to load PET and CT data separately. Is there an example
> for this?
>
> Much thanks,
> Zien
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
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From matt.mccormick at kitware.com  Tue Nov 24 05:49:24 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Tue, 24 Nov 2015 05:49:24 -0500
Subject: [ITK] [ITK-users] DicomSeriesReadImageWrite2.cxx
In-Reply-To: <1448356673777-36489.post@n7.nabble.com>
References: <1448356673777-36489.post@n7.nabble.com>
Message-ID: <CALzTN-TV4SYR+PrB8BYqM-=khpz7qCim-zWSU2i+wgjA_98jEg@mail.gmail.com>

Hello,

The effect you may be seeing may be due to the orientation assumed by your
visualization software.  See

  http://www.slicer.org/slicerWiki/index.php/Slicer:VTK_ITK_Coordinates

HTH,
Matt

On Tue, Nov 24, 2015 at 4:17 AM, Ais <lsustc at mail.ustc.edu.cn> wrote:

>  Dear Users,
>        I have built the project
> InsightToolkit-4.8.0\Examples\IODicomSeriesReadImageWrite2.cxx, I read a
> dicom series and generate a .img/hdr format 3D image,   but the 3D image is
> flipped, what's the reason?
>
>
>
> --
> View this message in context:
> http://itk-users.7.n7.nabble.com/ITK-users-DicomSeriesReadImageWrite2-cxx-tp36489.html
> Sent from the ITK - Users mailing list archive at Nabble.com.
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
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_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users

From zeinsalah at gmail.com  Tue Nov 24 06:47:35 2015
From: zeinsalah at gmail.com (Zein Salah)
Date: Tue, 24 Nov 2015 12:47:35 +0100
Subject: [ITK] [ITK-users] PET-CT importing in ITK
In-Reply-To: <CALzTN-SorAJj0pEg5+OT+vyg=uXUmBq1bLBFtf++6_SKmooUMg@mail.gmail.com>
References: <CADiSopPMjYMKXStb6hw83N0gD=u8O1PFkwk3dpxZ7e6wF3TA=Q@mail.gmail.com>
 <CALzTN-SorAJj0pEg5+OT+vyg=uXUmBq1bLBFtf++6_SKmooUMg@mail.gmail.com>
Message-ID: <CADiSopO3f1BZLkbX7thTVMPNYP3nmbb=8S4S__Y-vU1wrHOfgg@mail.gmail.com>

Thanks Matt!

This was not exactly the question. I already import dicom into itk. My
question was whether itk can import/extract pet data from pet-ct
slices.


2015-11-24 11:47 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:
> Hi Zein,
>
> Yes, ITK can read DICOM files.  See this example:
>
>
> http://www.itk.org/Doxygen/html/Examples_2IO_2DicomSeriesReadImageWrite2_8cxx-example.html
>
> HTH,
> Matt
>
> On Tue, Nov 24, 2015 at 4:49 AM, Zein Salah <zeinsalah at gmail.com> wrote:
>>
>> Hi,
>>
>> I have some PET-CT datasets that I can open, e.g., using DicomWorks.
>> Is is actually possible to import such data in ITK? I would like to be
>> able
>> to load PET and CT data separately. Is there an example
>> for this?
>>
>> Much thanks,
>> Zien
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-users
>
>

From dzenanz at gmail.com  Tue Nov 24 09:29:07 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Tue, 24 Nov 2015 09:29:07 -0500
Subject: [ITK] [ITK-users] PET-CT importing in ITK
In-Reply-To: <CADiSopO3f1BZLkbX7thTVMPNYP3nmbb=8S4S__Y-vU1wrHOfgg@mail.gmail.com>
References: <CADiSopPMjYMKXStb6hw83N0gD=u8O1PFkwk3dpxZ7e6wF3TA=Q@mail.gmail.com>
 <CALzTN-SorAJj0pEg5+OT+vyg=uXUmBq1bLBFtf++6_SKmooUMg@mail.gmail.com>
 <CADiSopO3f1BZLkbX7thTVMPNYP3nmbb=8S4S__Y-vU1wrHOfgg@mail.gmail.com>
Message-ID: <CAPf2UMRFn3rThHE9BpXiYQsRHxXUJm-y86dWT=rZmUFmJosxsQ@mail.gmail.com>

Hi Zein,

PET/CT slices are just two DICOM series. Extract PET series and write it as
.mha or .nrrd file, and then do the same for CT series. And then those 2
images are a PET/CT pair. You can also use DicomSeriesReadImageWrite3
<https://github.com/InsightSoftwareConsortium/ITKExamples/blob/master/src/IO/DICOM/DicomSeriesReadImageWrite3/Code.cxx>
.

Regards,
D?enan

On Tue, Nov 24, 2015 at 6:47 AM, Zein Salah <zeinsalah at gmail.com> wrote:

> Thanks Matt!
>
> This was not exactly the question. I already import dicom into itk. My
> question was whether itk can import/extract pet data from pet-ct
> slices.
>
>
> 2015-11-24 11:47 GMT+01:00 Matt McCormick <matt.mccormick at kitware.com>:
> > Hi Zein,
> >
> > Yes, ITK can read DICOM files.  See this example:
> >
> >
> >
> http://www.itk.org/Doxygen/html/Examples_2IO_2DicomSeriesReadImageWrite2_8cxx-example.html
> >
> > HTH,
> > Matt
> >
> > On Tue, Nov 24, 2015 at 4:49 AM, Zein Salah <zeinsalah at gmail.com> wrote:
> >>
> >> Hi,
> >>
> >> I have some PET-CT datasets that I can open, e.g., using DicomWorks.
> >> Is is actually possible to import such data in ITK? I would like to be
> >> able
> >> to load PET and CT data separately. Is there an example
> >> for this?
> >>
> >> Much thanks,
> >> Zien
> >> _____________________________________
> >> Powered by www.kitware.com
> >>
> >> Visit other Kitware open-source projects at
> >> http://www.kitware.com/opensource/opensource.html
> >>
> >> Kitware offers ITK Training Courses, for more information visit:
> >> http://www.kitware.com/products/protraining.php
> >>
> >> Please keep messages on-topic and check the ITK FAQ at:
> >> http://www.itk.org/Wiki/ITK_FAQ
> >>
> >> Follow this link to subscribe/unsubscribe:
> >> http://public.kitware.com/mailman/listinfo/insight-users
> >
> >
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
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_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users

From mohammedrashadkm at gmail.com  Tue Nov 24 10:39:37 2015
From: mohammedrashadkm at gmail.com (Rashad Kanavath)
Date: Tue, 24 Nov 2015 16:39:37 +0100
Subject: [ITK] [ITK-dev] clang throws a lot of -Wunknown-attributes warning.
Message-ID: <CANNqv9dKMUwETQFsVW1kE72J7vfFi=0KAuhdN7T5KX_eXtraew@mail.gmail.com>

Hello all,

I am getting a lot of warnings when using itk with clang compiler.

clang version: 3.5.0
Fedora Linux 22 x86_64
ITK trunk

In file included from
/home/otbtesting/sources/orfeo/trunk/OTB-Nightly/Modules/Core/SpatialObjects/include/otbLineSpatialObjectList.h:23:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkLineSpatialObject.h:23:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkPointBasedSpatialObject.h:21:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkSpatialObject.h:23:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkAffineGeometryFrame.h:23:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkScalableAffineTransform.h:21:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkAffineTransform.h:21:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkMatrixOffsetTransformBase.h:24:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkTransform.h:25:
In file included from
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkVariableLengthVector.h:1348:
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkVariableLengthVector.hxx:312:3:
warning: unknown attribute 'error' ignored [-Wunknown-attributes]
  itkStaticAssert(
  ^
/home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkStaticAssert.h:40:35:
note: expanded from macro 'itkStaticAssert'
      ({extern int __attribute__((error(str))) StaticAssertFailure(); \
                                  ^
3 warnings generated.

-- 
Regards,
   Rashad
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_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From c.spanakis83 at gmail.com  Wed Nov 25 07:40:10 2015
From: c.spanakis83 at gmail.com (Constantinus Spanakis)
Date: Wed, 25 Nov 2015 14:40:10 +0200
Subject: [ITK] Unresolved issues in ITK and VTK compilation
Message-ID: <CAOZihbcXny9277wNHn83biNKjT3u7d9qjKx4-MpbBEUk-fzmiQ@mail.gmail.com>

Hello. I tried to compile the sphinx and wiki examples of ITK (some of
which need VTK) and i got many mistakes, like the ones below:


SmoothingRecursiveGaussianImageFilter.obj : error LNK2019: unresolved
external symbol "public: void __cdecl QuickView::Visualize(bool)"
(?Visualize at QuickView@@QEAAX_N at Z) referenced in function main

SmoothingRecursiveGaussianImageFilter.obj : error LNK2019: unresolved
external symbol "public: void __cdecl QuickView::AddRGBImage<class
itk::Image<class itk::RGBPixel<unsigned char>,2> >(class
itk::Image<class itk::RGBPixel<unsigned char>,2> *,bool,class
std::basic_string<char,struct std::char_traits<char>,class
std::allocator<char> >)"
(??$AddRGBImage at V?$Image at V?$RGBPixel at E@itk@@$01 at itk@@@QuickView@@QEAAXPEAV?$Image at V?$RGBPixel at E@itk@@$01 at itk@@_NV?$basic_string at DU?$char_traits at D@std@@V?$allocator at D@2@@std@@@Z)
referenced in function main

what could be the problem?

From skalexander at gmail.com  Wed Nov 25 09:07:13 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Wed, 25 Nov 2015 14:07:13 +0000
Subject: [ITK] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is ready
	for testing!
In-Reply-To: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
Message-ID: <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>

Looks like a few problems with x64 build on visual studio 2015 - do you
have a test machine in this configuration?

On Mon, 23 Nov 2015 at 17:53 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> On behalf of the Insight Toolkit community, we are proud to announce that
> ITK 4.9 release candidate 1 has been tagged and is available for testing!
>
> Please take this opportunity to test the new features in the release
> candidate.
>
>
> To obtain the source code,
>
>   git clone http://itk.org/ITK.git
>  cd ITK
>  git checkout -q --detach v4.9rc01
>
> For more details, please see the Git documentation [1].
>
>
> A few selected highlights for this release:
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * New Remote modules: the Cuberille module for smooth generation of meshes
> from binary segmentation images, and the AnisotropicDiffusionLBR module
> improved edge-preserving smoothing.
> * Build your own ITK module outside the source tree, add continuous
> integration testing on GitHub, and easily add Python wrapping for your C++
> algorithms.
> * Python wrapping, including Python 3, builds faster with a more standard
> installation
> * Improved performance of itk::Image::GetPixel and operations on
> itk::VariableLengthVector?s
> * Generate a FlatStructuringElement from an image
> * Point-set registration with time-varying B-splines
> * Module dependencies can now be specified as public / private / compile /
> test
>
>
> Please test the release candidate and share your experiences on the
> mailing list, issue tracker, and Gerrit Code Review. The new module
> dependency specification mechanism may unearth missing dependencies for
> projects that use ITK COMPONENTS with the CMake find_package command.
>
>
> An Experimental build, which demonstrates how the test suite performs on
> your local build system, can be submitted to the dashboard [2] with:
>
>   mkdir ../ITK-build
>   cd ../ITK-build
>   cmake ../ITK
>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
>
> Visual Studio builds must also add ?-C Release? to the ctest command.
>
> Notify the mailing list if there are any unexpected failures.  Testing
> your own applications against the RC is also appreciated.
>
>
> Congratulations and well done to the 35 contributors to this release. We
> would especially like to recognize the new contributors: Mikhail Isakov,
> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun Odutola,
> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson, Luc
> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>
>
> The final release is scheduled for mid-December.
>
>
> [1] http://www.itk.org/Wiki/ITK/Git
>
> [2] http://open.cdash.org/index.php?project=Insight
>
>
>
> New Features
> ---------------------
>
> Wrapping improvements
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Python 3 supported
> * Wrapping builds much faster due to CastXML binaries
> * LandmarkBasedTransformInitializer now wrapped
> * NumPy bridge with VisualStudio
> * Wrapping for the MinimalPathExtraction module
> * Wrapping is now installed into Python?s site-packages directory in the
> ?itk? package
> * Wrapping package size is decreased
> * Better package portability on Mac OSX
>
>
> New Remote Modules
> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Cuberille
>    * Insight Journal Article: http://hdl.handle.net/10380/3186
> * AnisotropicDiffusionLBR
>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>    * Web browser reproducibility:
> http://www.kitware.com/blog/home/post/942
>
>
> Core Improvements
> ^^^^^^^^^^^^^^^^^^^^^^^
>
> * External Modules can now be developed outside of the ITK source tree and
> on GitHub
>    * Details: http://www.kitware.com/blog/home/post/997
> * New utilities in itk::Math:
>    * AlmostEquals
>    * NotAlmostEquals
>    * ExactlyEquals
>    * NotExactlyEquals
> * New itk::NumericTraits
>    * IsInteger
>    * IsSigned
> * Improved C++11 support
>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
> * Improved capabilities of itk::ResourceProbe and
> itk::ResourceProbesCollectorBase
> * Improve numerical stability in VNL eigen system estimation
> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>
>
> Filtering Improvements
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Generate a FlatStructuringElement from an image
> * WarpImageFilter support VectorImage?s
> * ConvertLabelMap supports different LabelMap types
> * ImageToPathFilter moved from the ITKReview to the ITKPath module
> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase module
>
>
> Registration Improvements
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Point-set registration with time-varying B-splines
>
>
> Build Improvements
> ^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Module dependencies can now be specified as public / private / compile /
> test
> * BUILD_EXAMPLES CMake option is now OFF by default
> * Option to export all library symbols on Windows:
>    * Details: http://www.kitware.com/blog/home/post/939
> * Expat third party library is now name mangled
> * Many more modules can be built as shared libraries
> * KWStyle is automatically built and configured when tests are built
>
>
> Performance Improvements
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
> metaprogramming
>    * itk::mpl::{TrueType,FalseType}
>    * itk::mpl::{If,Not,And,Or,Xor}
>    * itk::mpl::EnableIf
>    * itk::mpl::IsBaseOf
>    * itk::mpl::IsConvertible
>    * itk::mpl::IsNumber
>    * itk::mpl::IsSame
>    * itk::mpl::PromoteType
> * Image::GetPixel performance improvements
> * Many itk::VariableLengthVector performance improvements
> * AdaptiveHistogramEqualization uses a moving histogram
> * WarpImageFilter performance improvements
>
>
> Documentation Improvements
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
> * ITK Software Guide improvements
>    * How to use Python wrapping
>    * How to create an ITK module
>    * Improvements to segmentation examples
>    * Expanded Canny edge detection example
>    * Expanded tree container example
>
>
> Third Party Library Updates
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * FFTW updated to latest upstream
> * Build with recent OpenCV 2 and 3
> * Build with the latest VTK
> * PNG update to the latest upstream
> * GDCM updated to the latest upstream
> * KWSys updated to the latest upstream
> * MINC updated to the latest upstream
> * SWIG updated to the latest upstream
> * Third party PNG and MINC are now Git subtrees
>
>
> Style improvements -- ITK gets more stylish with every release!
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>
>
> Improved code coverage -- we are at 84.9%!
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
>
> * *Lots* of important bug fixes
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
>
> * And much more! See details in the log below.
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
>
>
> Changes from v4.8.0..v4.9rc01
> --------------------------------------------
>
>
> Abhishek Tiwari (1):
>      BUG: "tmpImageIndex" not initialized to 0.
>
> Adam Snyder (1):
>      PERF: Reworked MMI Threading using a per-thread buffer
>
> Alexander Leinoff (6):
>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to itkMath.h
>      COMP: Removes floating-point equality checks
>      ENH: COMP: Adds support for complex values to Math::AlmostEquals
>      ENH: Updates fftw dependency
>
> Arnaud Gelas (5):
>      COMP: fix warning (unused local typedef)
>      COMP: simplify ITKVideoBridgeOpenCV dependency
>      DOC: add doxgen documentation for BinaryImageToLevelSetImageAdaptor
>      ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
>      COMP: fix compilation error with OpenCV2 and OpenCV3
>
> Betsy McPhail (1):
>      BUG: Improve buffer alignment in OctreeNode .
>
> Bill Hoffman (2):
>      ENH: Use new CMake Windows export symbol dll feature.
>      COMP: Put vnl_export.h in the list of sources so it gets installed.
>
> Bill Lorensen (4):
>      COMP: VTkGlue linker errors
>      BUG: Inappropriate use of AlmostEquals
>      ENH: Bump tag for wiki examples
>      ENH: Better layout strategy
>
> Brad King (3):
>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>      ENH: Update CMake Policy settings in Testing/TestExternal project
>
> Bradley Lowekamp (31):
>      BUG: Avoid null deference in PrintSelf with default construction
>      ENH: Enable base classes for templates of landmark initializer
>      STYLE: Use "Swap" for ITK member name
>      BUG: Demonstrate Eigen analysis failure
>      BUG: Fix computation of Eigen analysis
>      ENH: Update DiscreteHessianGaussian Test baseline
>      ENH: Correctly demonstrate float point Eigen failure
>      ENH: compile vnl_math_hypot, and use at least double
>      ENH: Adding initial update script from used libpng version.
>      ENH: removing non-subtree files for itkpng
>      ENH: Ported ITK changes for building to subtree merged code
>      ENH: Update libpng update script for v1.6.9
>      BUG: Use ParameterValueType for computation of landmark affine
>      ENH: Wrap LandmarkBasedTransformInitializer
>      BUG: Avoid potential exception in itk::Object::UnRegister
>      ENH: Update itkpng zlib, configuration, and rename
>      ENH: Update itkpng name mangling
>      BUG: Use const pointer in Set method for constant ReferenceImage ivar
>      BUG: Increase tolerance for PhysicsBasedNonRigidRegistrationMethod
>      BUG: Demonstrate side effect on registration due to BSplineScatter
> change
>      ENH: Move MovingHistogramImageFilter base classes to ImageFilterBase
>      BUG: Avoid potential exception in itk::Object::UnRegister
>      BUG: Avoid null deference in PrintSelf with default construction
>      BUG: Use const pointer in Set method for constant ReferenceImage ivar
>      ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram base
>      COMP: address sign unsigned comparison warning
>      COMP: Address signed unsigned comparison warning
>      COMP: Address unused member variable and methods in anonymous ns
>      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>      BUG: Reduce number of targets with MSVC
>
> Davis Vigneault (7):
>      DOC: Minor improvements to segmentation examples.
>      DOC: Expanded Canny Edge Detection Example
>      DOC: Expanded TreeContainer Example
>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>      COMP: Warnings in FFTW Classes when compiling with c++11
>      COMP: Update Git Tag for Subdivision Module
>      COMP: Warnings in FFTW Classes when compiling with c++11
>
> D?enan Zuki? (1):
>      STYLE: better formatting of the "usage" message
>
> Eugene Prilepin (1):
>      BUG: Fix a template name formation in python wrappings
>
> Floris Berendsen (1):
>      STYLE: Improve naming conventions in comments.
>
> Hans Johnson (29):
>      STYLE: Instrument for FixedParameters typedef
>      BUG: Demonstrate DisplacementTransformFailure
>      BUG: FixedParameters should be double precision
>      STYLE: Minor code style issues for MGHIO
>      COMP: Update to version for WikiExamples
>      ENH: Update Sphinx for ITK 4.8.0
>      ENH: Update MGHIO to be shared lib
>      ENH: Provide consistent floating point comparisons
>      BUG: Fix MGHIO to fix write failures
>      PERF: Remove floating point as sentinal value
>      COMP: Const correctness needs to be maintained
>      BUG: Preserve backwards compatibility
>      DOC: Provide consistent naming in comments
>      ENH: Conversion between transform type tolerance
>      STYLE: Prefer initialization to assignment
>      ENH: Missing ITK_OVERRIDE
>      COMP: Need to propagate ITKGDCM
>      COMP: Need to propagate ITKGDCM
>      COMP: Add missing ITK_OVERRIDE
>      STYLE: Minor code style issues for MGHIO
>      COMP: Update to version for WikiExamples
>      ENH: Update Sphinx for ITK 4.8.0
>      ENH: Update MGHIO to be shared lib
>      BUG: Fix MGHIO to fix write failures
>      ENH: C++11 allows for rigorous =delete
>      COMP: Remove unnecessary failing assert test
>      ENH: Ignore internal files for the Clion editor
>      COMP: Fix VNL compilation for wider C++11 support
>      BUG: In configuration test need to mirror code
>
> Hyun Jae Kang (27):
>      BUG: Remove std::cout calls from class
>      BUG: Avoid an unexpected output of static_cast
>      BUG: Update python example codes for ImageRegistration
>      BUG: Retrieve the missed wrap file
>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> header.
>      BUG: Fix HDF5 CMake configuration with VS2015
>      BUG: Fix a compilation issue on ITK4 with FFTW and shared libraries
>      BUG: Fixed older XCode linking error
>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>      BUG: Remove std::cout calls from class
>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> header.
>      BUG: Fixed older XCode linking error
>      ENH: Add automatic KWStyle build and configuration setup
>      COMP: KWStyle shadow, format-nonliteral and autological-compare
> warning.
>      COMP: Fixed the warning messages from itkGPU Module
>      COMP: Fixed a warning message of unused-private-field
>      COMP: Apply latest version of KWStyle
>      COMP: Update KWStyle to fix its additional warning messages
>      COMP: Update KWStyle to fix its additional warning messages
>      COMP: Fix data-conversion warning messages on Windows
>      ENH: Update itkResourceProbe to calculate statistical data
>      COMP: Fix data-conversion warning messages on VS14
>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
>      ENH: Update the Report() function of itkResourceProbesCollectorBase
>      COMP: Fix data-conversion warning message on itkResourceProbe
>      COMP: Fix additional warning messages of KWStyle
>      COMP: Fix data-conversion warning messages
>
> Jon Haitz Legarreta (6):
>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>      BUG: Fix compilation issues for StatisticsUniqueLabelMapFilterTest
>      BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>      ENH: Improve code coverage for
> itkParametricSpaceToImageSpaceMeshFilter
>
> Julien Michel (1):
>      ENH: Support of VectorImage as template parameters for WarpImageFilter
>
> Junjie Bai (2):
>      BUG: ConvertLabelMap with different LabelMapTypes
>      BUG: LabelObject CopyAttribute support different LabelObject type
>
> KWSys Robot (4):
>      KWSys 2015-07-10 (c9336bcf)
>      KWSys 2015-07-30 (f63febb7)
>      KWSys 2015-08-24 (cdaf522c)
>      KWSys 2015-08-28 (dc3fdd7f)
>
> LIBPNG Upstream (2):
>      PNG 2009-04-06 (e68f5a36)
>      PNG 2014-02-05 (3e753eb8)
>
> Laurentiu Nicola (2):
>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>
> Luc Hermitte (8):
>      PERF: itk::Image::GetPixel() performance improvment.
>      PERF: Performance enhancements on VariableLengthVectors 1/...
>      ENH: Dependencies on itkVariableLengthVector.h reduced
>      BUG: Error in VariableLengthVector Unit Tests
>      PERF: Performance enhancements on VLV 2/...
>      PERF: Performances enhancements on VLV 3/...
>      COMP: Fix signed/unsigned warnings
>      BUG: std::copy/fill on empty VLV
>
> Lucas Gandel (4):
>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
>      STYLE: Fix KWStyle dashboard errors
>      BUG: Fix external module BUILD_SHARED_LIBS status
>
> Mathieu Malaterre (1):
>      BUG: Name mangle the included expat third party library.
>
> Matthew McCormick (94):
>      ENH: Change itkSystemInformationTest to itkCMakeConfigurationTest.
>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>      ENH: Bump ITK version to 4.9.0.
>      BUG: Remove std::cout calls from classes.
>      COMP: Remove unused argument in ConditionVariableNoThreads.
>      BUG: Implement UpdateLargestPossibleRegion for ImageToVTKImageFilter.
>      COMP: Add link interface specification for wrapping
> target_link_libraries.
>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>      COMP: Fix MINCTransformIO factory registration.
>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>      COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
>      BUG: Initialize mutex for 32 bit AtomicInt.
>      ENH: Use CastXML binaries when building with x86_64 Linux.
>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>      COMP: Disable the gold linker for static builds on Ubuntu 14.04.
>      ENH: Use Windows binaries for CastXML.
>      ENH: Add better scoping in igenerator.py.
>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>      BUG: LevelSetsv4 used signed char instead of char.
>      ENH: Add better scoping to idx.py.
>      COMP: Define newSize and oldSize in VariableLengthVector.
>      STYLE: Use prefix increment operator in ImageBase.
>      DOC: Correct spelling of Continuous.
>      ENH: Add more progress information to IterativeClosestPoint2.
>      BUG: Build BridgeNumPy with Visual Studio.
>      ENH: Add ITKModuleExternal.cmake
>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>      BUG: Use CastXML binary built in Release.
>      BUG: ContinuousIndex should not be templated over TCoordRep.
>      COMP: Set CMP0054 to new.
>      COMP: Address line length too long for Software Guide.
>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>      BUG: Support Python 3 wrapping module initialization.
>      BUG: Update itkTemplate.py for Python 3.
>      BUG: Update itkExtras.py for Python 3.
>      BUG: Prevent Python callback addition recursion.
>      BUG: Fix test scripts for Python 3.
>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>      ENH: Allow projects to build against an external module.
>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>      ENH: Rename _cable_ to _wrappers_.
>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>      ENH: Bump CMakeLists.txt version to 4.8.1.
>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>      ENH: Bump CastXML version to 2015-30-29.
>      ENH: Bump LLVM / Clang to 3.7.0.
>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>      COMP: Add missing ITKIOImageBase dependency for ITKTransformMINC.
>      COMP: Use itkSimpleNewMacro in ThreadedIteratorRangePartitionerTest.
>      ENH: Add wrapping support for building modules externally.
>      BUG: Fix KWStyle test paths when building a module externally.
>      ENH: Add Cuberille Remote module.
>      COMP: Remove carriage returns from Cuberille remote.
>      COMP: Remove unused argument in ConditionVariableNoThreads.
>      DOC: Correct spelling of Continuous.
>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>      COMP: Fix KernelTransform SetFixedParameters argument type.
>      STYLE: Use prefix increment operator in ImageBase.
>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>      Revert "COMP: Put vnl_export.h in the list of sources so it gets
> installed."
>      BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
>      ENH: Marking wrapping CMake configuration variables as advanced.
>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>      COMP: Non-virtual copy attribute members in LabelMap cannot have
> override.
>      COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>      BUG: Improve KWStyle ExternalProject utilization.
>      ENH: Remove old KWStyle build script.
>      COMP: Address VariableLengthVector Doxygen rhs @param not found.
>      ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
>      ENH: Install Python bindings into site-packages.
>      ENH: Improve readability of Python site-packages path detection.
>      COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
> warning.
>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>      COMP: Improve scoping in CovariantVectorGeometryTest.
>      ENH: Improves names and export of module dependencies.
>      STYLE: Improve namespace bracket style in itkIsConvertible.
>      COMP: Set CMP0054 to new.
>      BUG: Remove unused wrapping files.
>      BUG: Do install install wrapping development files.
>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>      BUG: Remove duplicate inclusion of wrapping submodules.
>      COMP: Do not use C++ style comments for Doxygen cond.
>      BUG: Fix detection of the gold linker.
>      BUG: Update Python package installation locations.
>      ENH: Bump CMakeLists.txt version to 4.8.2.
>      ENH: Change BUILD_EXAMPLES default to OFF.
>      BUG: Use 'from itk import ITKCommon' in module2module test.
>      COMP: Link to VTK Python when built with Kits support.
>      BUG: Install itk_minc2.h header.
>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>
> Michka Popoff (9):
>      ENH: Update to swig 3.0.7
>      ENH: Do not link against specific Python library on OS X
>      COMP: Fix wrapping warnings when building with ITK_WRAP_IMAGE_DIMS=2
>      COMP: Add missing wrapping for TransformBase
>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>      COMP: Disable incompatible modules when using Python 3 wrapping
>      COMP: Move MovingHistogramImageFilterBase wrapping to ImageFilterBase
> module
>      COMP: Disable incompatible modules when using Python 3 wrapping
>      ENH: Allow operations on Indexes and Offsets in Python
>
> Mikhail Isakov (1):
>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
>
> Nick Tustison (5):
>      BUG:  Set a default b-spline epsilon.
>      ENH: Adding testing for closed loop.
>      BUG:  Updating B-spline classes with the same epsilon strategy.
>      PERF:  Switch vnl_vectors for fixed arrays.
>      ENH:  Point-set registration with time-varying B-spline.
>
> Olivier Commowick (3):
>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen system
>      BUG: Correct under/overflows in vnl_math_hypot (taken from pythag
> from V3P)
>      BUG: Switch eigenvalues computation to double
>
> Pablo Hernandez-Cerdan (2):
>      ENH: Help class for itkFlatStructuringElement with constructor from
> images.
>      COMP: Fix test errors and warnings in FlatStructuringElement.
>
> Seun Odutola (1):
>      COMP: Fixed name clash with Apple header (check Macro), renamed check
> to Check
>
> Shawn Waldon (1):
>      COMP: Set target OS X version in environment for tools using compiler
>
> Simon Alexander (1):
>      BUG: incorrect closest point computation
>
> Tobias Wood (2):
>      BUG: LBFGSB was printing messages even with debug switched off.
>      BUG: Removed an unguarded print statement.
>
> Vladimir S. FONOV (9):
>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>      COMP: Changing the order of HDF5 library components
>      COMP: Splitting up IOMINC module into two parts: MINC and Transform
>      STYLE: updated comments to properly reference LIBMINC
>      ENH: Add script to merge upstream MINC as a subtree
>      MINC 2015-07-23 (c033d431)
>      COMP: Update MINC CMake code
>      MINC 2015-08-18 (6d7e3ba8)
>      MINC 2015-09-13 (95cd5374)
>
> Xiaoxiao Liu (1):
>      DOC: update email address for xiaoxiao.
>
> Zach Williamson (10):
>      BUG: Use correct libraries for ImageFusion tests
>      ENH: Consolidate Library Dependencies
>      COMP: Add a missing link to Review module
>      COMP: Use correct linking macro in DCMTK
>      BUG: Use correct libraries for TestKernel tests
>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>      ENH: Use new linking system macros
>      PERF: Avoid searching private dependencies for include directories
>      COMP: Recover missing dependencies
>      ENH: use new linking macros in Filtering module
>
>
>
> -----------------------------------------------------
> Errors or omissions? Please fix them here:
>
>
> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
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From bill.lorensen at gmail.com  Wed Nov 25 10:36:45 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Wed, 25 Nov 2015 10:36:45 -0500
Subject: [ITK] Unresolved issues in ITK and VTK compilation
In-Reply-To: <CAOZihbcXny9277wNHn83biNKjT3u7d9qjKx4-MpbBEUk-fzmiQ@mail.gmail.com>
References: <CAOZihbcXny9277wNHn83biNKjT3u7d9qjKx4-MpbBEUk-fzmiQ@mail.gmail.com>
Message-ID: <CADZJ4hMxyx0aurPK3sfksfXN9xQL2Yt41kKd281_wAoyf3meAA@mail.gmail.com>

When you configure your itk build with cmake,

Module_ITKVtkGlue:BOOL=ON


On Wed, Nov 25, 2015 at 7:40 AM, Constantinus Spanakis
<c.spanakis83 at gmail.com> wrote:
> Hello. I tried to compile the sphinx and wiki examples of ITK (some of
> which need VTK) and i got many mistakes, like the ones below:
>
>
> SmoothingRecursiveGaussianImageFilter.obj : error LNK2019: unresolved
> external symbol "public: void __cdecl QuickView::Visualize(bool)"
> (?Visualize at QuickView@@QEAAX_N at Z) referenced in function main
>
> SmoothingRecursiveGaussianImageFilter.obj : error LNK2019: unresolved
> external symbol "public: void __cdecl QuickView::AddRGBImage<class
> itk::Image<class itk::RGBPixel<unsigned char>,2> >(class
> itk::Image<class itk::RGBPixel<unsigned char>,2> *,bool,class
> std::basic_string<char,struct std::char_traits<char>,class
> std::allocator<char> >)"
> (??$AddRGBImage at V?$Image at V?$RGBPixel at E@itk@@$01 at itk@@@QuickView@@QEAAXPEAV?$Image at V?$RGBPixel at E@itk@@$01 at itk@@_NV?$basic_string at DU?$char_traits at D@std@@V?$allocator at D@2@@std@@@Z)
> referenced in function main
>
> what could be the problem?
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community



-- 
Unpaid intern in BillsBasement at noware dot com

From matt.mccormick at kitware.com  Wed Nov 25 10:47:54 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 25 Nov 2015 10:47:54 -0500
Subject: [ITK] [ITK-dev] clang throws a lot of
	-Wunknown-attributes	warning.
In-Reply-To: <CANNqv9dKMUwETQFsVW1kE72J7vfFi=0KAuhdN7T5KX_eXtraew@mail.gmail.com>
References: <CANNqv9dKMUwETQFsVW1kE72J7vfFi=0KAuhdN7T5KX_eXtraew@mail.gmail.com>
Message-ID: <CALzTN-SnLVa1dB1voe0fnjCP3p0FzdeBsyBLVe2HTQj0E+PDBw@mail.gmail.com>

Hi Rashad,

Thanks for discussing issue.

I have been using that compiler and have not come across those warnings.
Are there any non-default flags or CMake options being used?

Could you please submit an Experimental build to the dashboard? ('ctest -D
Experimental' from a clean build tree)

Thanks,
Matt

On Tue, Nov 24, 2015 at 10:39 AM, Rashad Kanavath <
mohammedrashadkm at gmail.com> wrote:

> Hello all,
>
> I am getting a lot of warnings when using itk with clang compiler.
>
> clang version: 3.5.0
> Fedora Linux 22 x86_64
> ITK trunk
>
> In file included from
> /home/otbtesting/sources/orfeo/trunk/OTB-Nightly/Modules/Core/SpatialObjects/include/otbLineSpatialObjectList.h:23:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkLineSpatialObject.h:23:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkPointBasedSpatialObject.h:21:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkSpatialObject.h:23:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkAffineGeometryFrame.h:23:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkScalableAffineTransform.h:21:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkAffineTransform.h:21:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkMatrixOffsetTransformBase.h:24:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkTransform.h:25:
> In file included from
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkVariableLengthVector.h:1348:
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkVariableLengthVector.hxx:312:3:
> warning: unknown attribute 'error' ignored [-Wunknown-attributes]
>   itkStaticAssert(
>   ^
> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkStaticAssert.h:40:35:
> note: expanded from macro 'itkStaticAssert'
>       ({extern int __attribute__((error(str))) StaticAssertFailure(); \
>                                   ^
> 3 warnings generated.
>
> --
> Regards,
>    Rashad
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
>
> _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
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_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From matt.mccormick at kitware.com  Wed Nov 25 10:51:36 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 25 Nov 2015 10:51:36 -0500
Subject: [ITK] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is ready
	for testing!
In-Reply-To: <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
Message-ID: <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>

Hi Simon,

Thanks for testing.

We have a Visual Studio 2015 build on the dashboard that is green:

  https://open.cdash.org/buildSummary.php?buildid=4117955

Are there any different flags? Could you please submit an Experimental build?

  ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit -C Release

from a fresh build tree.

Thanks,
Matt

On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <skalexander at gmail.com> wrote:
> Looks like a few problems with x64 build on visual studio 2015 - do you have
> a test machine in this configuration?
>
> On Mon, 23 Nov 2015 at 17:53 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> On behalf of the Insight Toolkit community, we are proud to announce that
>> ITK 4.9 release candidate 1 has been tagged and is available for testing!
>>
>> Please take this opportunity to test the new features in the release
>> candidate.
>>
>>
>> To obtain the source code,
>>
>>   git clone http://itk.org/ITK.git
>>  cd ITK
>>  git checkout -q --detach v4.9rc01
>>
>> For more details, please see the Git documentation [1].
>>
>>
>> A few selected highlights for this release:
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * New Remote modules: the Cuberille module for smooth generation of meshes
>> from binary segmentation images, and the AnisotropicDiffusionLBR module
>> improved edge-preserving smoothing.
>> * Build your own ITK module outside the source tree, add continuous
>> integration testing on GitHub, and easily add Python wrapping for your C++
>> algorithms.
>> * Python wrapping, including Python 3, builds faster with a more standard
>> installation
>> * Improved performance of itk::Image::GetPixel and operations on
>> itk::VariableLengthVector?s
>> * Generate a FlatStructuringElement from an image
>> * Point-set registration with time-varying B-splines
>> * Module dependencies can now be specified as public / private / compile /
>> test
>>
>>
>> Please test the release candidate and share your experiences on the
>> mailing list, issue tracker, and Gerrit Code Review. The new module
>> dependency specification mechanism may unearth missing dependencies for
>> projects that use ITK COMPONENTS with the CMake find_package command.
>>
>>
>> An Experimental build, which demonstrates how the test suite performs on
>> your local build system, can be submitted to the dashboard [2] with:
>>
>>   mkdir ../ITK-build
>>   cd ../ITK-build
>>   cmake ../ITK
>>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
>>
>> Visual Studio builds must also add ?-C Release? to the ctest command.
>>
>> Notify the mailing list if there are any unexpected failures.  Testing
>> your own applications against the RC is also appreciated.
>>
>>
>> Congratulations and well done to the 35 contributors to this release. We
>> would especially like to recognize the new contributors: Mikhail Isakov,
>> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun Odutola,
>> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson, Luc
>> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>
>>
>> The final release is scheduled for mid-December.
>>
>>
>> [1] http://www.itk.org/Wiki/ITK/Git
>>
>> [2] http://open.cdash.org/index.php?project=Insight
>>
>>
>>
>> New Features
>> ---------------------
>>
>> Wrapping improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Python 3 supported
>> * Wrapping builds much faster due to CastXML binaries
>> * LandmarkBasedTransformInitializer now wrapped
>> * NumPy bridge with VisualStudio
>> * Wrapping for the MinimalPathExtraction module
>> * Wrapping is now installed into Python?s site-packages directory in the
>> ?itk? package
>> * Wrapping package size is decreased
>> * Better package portability on Mac OSX
>>
>>
>> New Remote Modules
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Cuberille
>>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>> * AnisotropicDiffusionLBR
>>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>    * Web browser reproducibility:
>> http://www.kitware.com/blog/home/post/942
>>
>>
>> Core Improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * External Modules can now be developed outside of the ITK source tree and
>> on GitHub
>>    * Details: http://www.kitware.com/blog/home/post/997
>> * New utilities in itk::Math:
>>    * AlmostEquals
>>    * NotAlmostEquals
>>    * ExactlyEquals
>>    * NotExactlyEquals
>> * New itk::NumericTraits
>>    * IsInteger
>>    * IsSigned
>> * Improved C++11 support
>>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>> * Improved capabilities of itk::ResourceProbe and
>> itk::ResourceProbesCollectorBase
>> * Improve numerical stability in VNL eigen system estimation
>> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>
>>
>> Filtering Improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Generate a FlatStructuringElement from an image
>> * WarpImageFilter support VectorImage?s
>> * ConvertLabelMap supports different LabelMap types
>> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase module
>>
>>
>> Registration Improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Point-set registration with time-varying B-splines
>>
>>
>> Build Improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Module dependencies can now be specified as public / private / compile /
>> test
>> * BUILD_EXAMPLES CMake option is now OFF by default
>> * Option to export all library symbols on Windows:
>>    * Details: http://www.kitware.com/blog/home/post/939
>> * Expat third party library is now name mangled
>> * Many more modules can be built as shared libraries
>> * KWStyle is automatically built and configured when tests are built
>>
>>
>> Performance Improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
>> metaprogramming
>>    * itk::mpl::{TrueType,FalseType}
>>    * itk::mpl::{If,Not,And,Or,Xor}
>>    * itk::mpl::EnableIf
>>    * itk::mpl::IsBaseOf
>>    * itk::mpl::IsConvertible
>>    * itk::mpl::IsNumber
>>    * itk::mpl::IsSame
>>    * itk::mpl::PromoteType
>> * Image::GetPixel performance improvements
>> * Many itk::VariableLengthVector performance improvements
>> * AdaptiveHistogramEqualization uses a moving histogram
>> * WarpImageFilter performance improvements
>>
>>
>> Documentation Improvements
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>> * ITK Software Guide improvements
>>    * How to use Python wrapping
>>    * How to create an ITK module
>>    * Improvements to segmentation examples
>>    * Expanded Canny edge detection example
>>    * Expanded tree container example
>>
>>
>> Third Party Library Updates
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * FFTW updated to latest upstream
>> * Build with recent OpenCV 2 and 3
>> * Build with the latest VTK
>> * PNG update to the latest upstream
>> * GDCM updated to the latest upstream
>> * KWSys updated to the latest upstream
>> * MINC updated to the latest upstream
>> * SWIG updated to the latest upstream
>> * Third party PNG and MINC are now Git subtrees
>>
>>
>> Style improvements -- ITK gets more stylish with every release!
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>>
>>
>> Improved code coverage -- we are at 84.9%!
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>>
>> * *Lots* of important bug fixes
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>>
>> * And much more! See details in the log below.
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>
>>
>>
>> Changes from v4.8.0..v4.9rc01
>> --------------------------------------------
>>
>>
>> Abhishek Tiwari (1):
>>      BUG: "tmpImageIndex" not initialized to 0.
>>
>> Adam Snyder (1):
>>      PERF: Reworked MMI Threading using a per-thread buffer
>>
>> Alexander Leinoff (6):
>>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to itkMath.h
>>      COMP: Removes floating-point equality checks
>>      ENH: COMP: Adds support for complex values to Math::AlmostEquals
>>      ENH: Updates fftw dependency
>>
>> Arnaud Gelas (5):
>>      COMP: fix warning (unused local typedef)
>>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>      DOC: add doxgen documentation for BinaryImageToLevelSetImageAdaptor
>>      ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
>>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>
>> Betsy McPhail (1):
>>      BUG: Improve buffer alignment in OctreeNode .
>>
>> Bill Hoffman (2):
>>      ENH: Use new CMake Windows export symbol dll feature.
>>      COMP: Put vnl_export.h in the list of sources so it gets installed.
>>
>> Bill Lorensen (4):
>>      COMP: VTkGlue linker errors
>>      BUG: Inappropriate use of AlmostEquals
>>      ENH: Bump tag for wiki examples
>>      ENH: Better layout strategy
>>
>> Brad King (3):
>>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>      ENH: Update CMake Policy settings in Testing/TestExternal project
>>
>> Bradley Lowekamp (31):
>>      BUG: Avoid null deference in PrintSelf with default construction
>>      ENH: Enable base classes for templates of landmark initializer
>>      STYLE: Use "Swap" for ITK member name
>>      BUG: Demonstrate Eigen analysis failure
>>      BUG: Fix computation of Eigen analysis
>>      ENH: Update DiscreteHessianGaussian Test baseline
>>      ENH: Correctly demonstrate float point Eigen failure
>>      ENH: compile vnl_math_hypot, and use at least double
>>      ENH: Adding initial update script from used libpng version.
>>      ENH: removing non-subtree files for itkpng
>>      ENH: Ported ITK changes for building to subtree merged code
>>      ENH: Update libpng update script for v1.6.9
>>      BUG: Use ParameterValueType for computation of landmark affine
>>      ENH: Wrap LandmarkBasedTransformInitializer
>>      BUG: Avoid potential exception in itk::Object::UnRegister
>>      ENH: Update itkpng zlib, configuration, and rename
>>      ENH: Update itkpng name mangling
>>      BUG: Use const pointer in Set method for constant ReferenceImage ivar
>>      BUG: Increase tolerance for PhysicsBasedNonRigidRegistrationMethod
>>      BUG: Demonstrate side effect on registration due to BSplineScatter
>> change
>>      ENH: Move MovingHistogramImageFilter base classes to ImageFilterBase
>>      BUG: Avoid potential exception in itk::Object::UnRegister
>>      BUG: Avoid null deference in PrintSelf with default construction
>>      BUG: Use const pointer in Set method for constant ReferenceImage ivar
>>      ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram base
>>      COMP: address sign unsigned comparison warning
>>      COMP: Address signed unsigned comparison warning
>>      COMP: Address unused member variable and methods in anonymous ns
>>      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
>>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>>      BUG: Reduce number of targets with MSVC
>>
>> Davis Vigneault (7):
>>      DOC: Minor improvements to segmentation examples.
>>      DOC: Expanded Canny Edge Detection Example
>>      DOC: Expanded TreeContainer Example
>>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>>      COMP: Warnings in FFTW Classes when compiling with c++11
>>      COMP: Update Git Tag for Subdivision Module
>>      COMP: Warnings in FFTW Classes when compiling with c++11
>>
>> D?enan Zuki? (1):
>>      STYLE: better formatting of the "usage" message
>>
>> Eugene Prilepin (1):
>>      BUG: Fix a template name formation in python wrappings
>>
>> Floris Berendsen (1):
>>      STYLE: Improve naming conventions in comments.
>>
>> Hans Johnson (29):
>>      STYLE: Instrument for FixedParameters typedef
>>      BUG: Demonstrate DisplacementTransformFailure
>>      BUG: FixedParameters should be double precision
>>      STYLE: Minor code style issues for MGHIO
>>      COMP: Update to version for WikiExamples
>>      ENH: Update Sphinx for ITK 4.8.0
>>      ENH: Update MGHIO to be shared lib
>>      ENH: Provide consistent floating point comparisons
>>      BUG: Fix MGHIO to fix write failures
>>      PERF: Remove floating point as sentinal value
>>      COMP: Const correctness needs to be maintained
>>      BUG: Preserve backwards compatibility
>>      DOC: Provide consistent naming in comments
>>      ENH: Conversion between transform type tolerance
>>      STYLE: Prefer initialization to assignment
>>      ENH: Missing ITK_OVERRIDE
>>      COMP: Need to propagate ITKGDCM
>>      COMP: Need to propagate ITKGDCM
>>      COMP: Add missing ITK_OVERRIDE
>>      STYLE: Minor code style issues for MGHIO
>>      COMP: Update to version for WikiExamples
>>      ENH: Update Sphinx for ITK 4.8.0
>>      ENH: Update MGHIO to be shared lib
>>      BUG: Fix MGHIO to fix write failures
>>      ENH: C++11 allows for rigorous =delete
>>      COMP: Remove unnecessary failing assert test
>>      ENH: Ignore internal files for the Clion editor
>>      COMP: Fix VNL compilation for wider C++11 support
>>      BUG: In configuration test need to mirror code
>>
>> Hyun Jae Kang (27):
>>      BUG: Remove std::cout calls from class
>>      BUG: Avoid an unexpected output of static_cast
>>      BUG: Update python example codes for ImageRegistration
>>      BUG: Retrieve the missed wrap file
>>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
>> header.
>>      BUG: Fix HDF5 CMake configuration with VS2015
>>      BUG: Fix a compilation issue on ITK4 with FFTW and shared libraries
>>      BUG: Fixed older XCode linking error
>>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>>      BUG: Remove std::cout calls from class
>>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
>> header.
>>      BUG: Fixed older XCode linking error
>>      ENH: Add automatic KWStyle build and configuration setup
>>      COMP: KWStyle shadow, format-nonliteral and autological-compare
>> warning.
>>      COMP: Fixed the warning messages from itkGPU Module
>>      COMP: Fixed a warning message of unused-private-field
>>      COMP: Apply latest version of KWStyle
>>      COMP: Update KWStyle to fix its additional warning messages
>>      COMP: Update KWStyle to fix its additional warning messages
>>      COMP: Fix data-conversion warning messages on Windows
>>      ENH: Update itkResourceProbe to calculate statistical data
>>      COMP: Fix data-conversion warning messages on VS14
>>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
>>      ENH: Update the Report() function of itkResourceProbesCollectorBase
>>      COMP: Fix data-conversion warning message on itkResourceProbe
>>      COMP: Fix additional warning messages of KWStyle
>>      COMP: Fix data-conversion warning messages
>>
>> Jon Haitz Legarreta (6):
>>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>      BUG: Fix compilation issues for StatisticsUniqueLabelMapFilterTest
>>      BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
>>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>      ENH: Improve code coverage for
>> itkParametricSpaceToImageSpaceMeshFilter
>>
>> Julien Michel (1):
>>      ENH: Support of VectorImage as template parameters for
>> WarpImageFilter
>>
>> Junjie Bai (2):
>>      BUG: ConvertLabelMap with different LabelMapTypes
>>      BUG: LabelObject CopyAttribute support different LabelObject type
>>
>> KWSys Robot (4):
>>      KWSys 2015-07-10 (c9336bcf)
>>      KWSys 2015-07-30 (f63febb7)
>>      KWSys 2015-08-24 (cdaf522c)
>>      KWSys 2015-08-28 (dc3fdd7f)
>>
>> LIBPNG Upstream (2):
>>      PNG 2009-04-06 (e68f5a36)
>>      PNG 2014-02-05 (3e753eb8)
>>
>> Laurentiu Nicola (2):
>>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>>
>> Luc Hermitte (8):
>>      PERF: itk::Image::GetPixel() performance improvment.
>>      PERF: Performance enhancements on VariableLengthVectors 1/...
>>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>      BUG: Error in VariableLengthVector Unit Tests
>>      PERF: Performance enhancements on VLV 2/...
>>      PERF: Performances enhancements on VLV 3/...
>>      COMP: Fix signed/unsigned warnings
>>      BUG: std::copy/fill on empty VLV
>>
>> Lucas Gandel (4):
>>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
>>      STYLE: Fix KWStyle dashboard errors
>>      BUG: Fix external module BUILD_SHARED_LIBS status
>>
>> Mathieu Malaterre (1):
>>      BUG: Name mangle the included expat third party library.
>>
>> Matthew McCormick (94):
>>      ENH: Change itkSystemInformationTest to itkCMakeConfigurationTest.
>>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>      ENH: Bump ITK version to 4.9.0.
>>      BUG: Remove std::cout calls from classes.
>>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>      BUG: Implement UpdateLargestPossibleRegion for ImageToVTKImageFilter.
>>      COMP: Add link interface specification for wrapping
>> target_link_libraries.
>>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>      COMP: Fix MINCTransformIO factory registration.
>>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>      COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
>>      BUG: Initialize mutex for 32 bit AtomicInt.
>>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>      COMP: Disable the gold linker for static builds on Ubuntu 14.04.
>>      ENH: Use Windows binaries for CastXML.
>>      ENH: Add better scoping in igenerator.py.
>>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>      BUG: LevelSetsv4 used signed char instead of char.
>>      ENH: Add better scoping to idx.py.
>>      COMP: Define newSize and oldSize in VariableLengthVector.
>>      STYLE: Use prefix increment operator in ImageBase.
>>      DOC: Correct spelling of Continuous.
>>      ENH: Add more progress information to IterativeClosestPoint2.
>>      BUG: Build BridgeNumPy with Visual Studio.
>>      ENH: Add ITKModuleExternal.cmake
>>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>      BUG: Use CastXML binary built in Release.
>>      BUG: ContinuousIndex should not be templated over TCoordRep.
>>      COMP: Set CMP0054 to new.
>>      COMP: Address line length too long for Software Guide.
>>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>      BUG: Support Python 3 wrapping module initialization.
>>      BUG: Update itkTemplate.py for Python 3.
>>      BUG: Update itkExtras.py for Python 3.
>>      BUG: Prevent Python callback addition recursion.
>>      BUG: Fix test scripts for Python 3.
>>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>      ENH: Allow projects to build against an external module.
>>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>      ENH: Rename _cable_ to _wrappers_.
>>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>      ENH: Bump CastXML version to 2015-30-29.
>>      ENH: Bump LLVM / Clang to 3.7.0.
>>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>      COMP: Add missing ITKIOImageBase dependency for ITKTransformMINC.
>>      COMP: Use itkSimpleNewMacro in ThreadedIteratorRangePartitionerTest.
>>      ENH: Add wrapping support for building modules externally.
>>      BUG: Fix KWStyle test paths when building a module externally.
>>      ENH: Add Cuberille Remote module.
>>      COMP: Remove carriage returns from Cuberille remote.
>>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>      DOC: Correct spelling of Continuous.
>>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>      STYLE: Use prefix increment operator in ImageBase.
>>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>      Revert "COMP: Put vnl_export.h in the list of sources so it gets
>> installed."
>>      BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
>>      ENH: Marking wrapping CMake configuration variables as advanced.
>>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>      COMP: Non-virtual copy attribute members in LabelMap cannot have
>> override.
>>      COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
>>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>>      BUG: Improve KWStyle ExternalProject utilization.
>>      ENH: Remove old KWStyle build script.
>>      COMP: Address VariableLengthVector Doxygen rhs @param not found.
>>      ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
>>      ENH: Install Python bindings into site-packages.
>>      ENH: Improve readability of Python site-packages path detection.
>>      COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
>> warning.
>>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>      ENH: Improves names and export of module dependencies.
>>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>      COMP: Set CMP0054 to new.
>>      BUG: Remove unused wrapping files.
>>      BUG: Do install install wrapping development files.
>>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>      BUG: Remove duplicate inclusion of wrapping submodules.
>>      COMP: Do not use C++ style comments for Doxygen cond.
>>      BUG: Fix detection of the gold linker.
>>      BUG: Update Python package installation locations.
>>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>      ENH: Change BUILD_EXAMPLES default to OFF.
>>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>      COMP: Link to VTK Python when built with Kits support.
>>      BUG: Install itk_minc2.h header.
>>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>
>> Michka Popoff (9):
>>      ENH: Update to swig 3.0.7
>>      ENH: Do not link against specific Python library on OS X
>>      COMP: Fix wrapping warnings when building with ITK_WRAP_IMAGE_DIMS=2
>>      COMP: Add missing wrapping for TransformBase
>>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>      COMP: Disable incompatible modules when using Python 3 wrapping
>>      COMP: Move MovingHistogramImageFilterBase wrapping to ImageFilterBase
>> module
>>      COMP: Disable incompatible modules when using Python 3 wrapping
>>      ENH: Allow operations on Indexes and Offsets in Python
>>
>> Mikhail Isakov (1):
>>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
>>
>> Nick Tustison (5):
>>      BUG:  Set a default b-spline epsilon.
>>      ENH: Adding testing for closed loop.
>>      BUG:  Updating B-spline classes with the same epsilon strategy.
>>      PERF:  Switch vnl_vectors for fixed arrays.
>>      ENH:  Point-set registration with time-varying B-spline.
>>
>> Olivier Commowick (3):
>>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen
>> system
>>      BUG: Correct under/overflows in vnl_math_hypot (taken from pythag
>> from V3P)
>>      BUG: Switch eigenvalues computation to double
>>
>> Pablo Hernandez-Cerdan (2):
>>      ENH: Help class for itkFlatStructuringElement with constructor from
>> images.
>>      COMP: Fix test errors and warnings in FlatStructuringElement.
>>
>> Seun Odutola (1):
>>      COMP: Fixed name clash with Apple header (check Macro), renamed check
>> to Check
>>
>> Shawn Waldon (1):
>>      COMP: Set target OS X version in environment for tools using compiler
>>
>> Simon Alexander (1):
>>      BUG: incorrect closest point computation
>>
>> Tobias Wood (2):
>>      BUG: LBFGSB was printing messages even with debug switched off.
>>      BUG: Removed an unguarded print statement.
>>
>> Vladimir S. FONOV (9):
>>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>      COMP: Changing the order of HDF5 library components
>>      COMP: Splitting up IOMINC module into two parts: MINC and Transform
>>      STYLE: updated comments to properly reference LIBMINC
>>      ENH: Add script to merge upstream MINC as a subtree
>>      MINC 2015-07-23 (c033d431)
>>      COMP: Update MINC CMake code
>>      MINC 2015-08-18 (6d7e3ba8)
>>      MINC 2015-09-13 (95cd5374)
>>
>> Xiaoxiao Liu (1):
>>      DOC: update email address for xiaoxiao.
>>
>> Zach Williamson (10):
>>      BUG: Use correct libraries for ImageFusion tests
>>      ENH: Consolidate Library Dependencies
>>      COMP: Add a missing link to Review module
>>      COMP: Use correct linking macro in DCMTK
>>      BUG: Use correct libraries for TestKernel tests
>>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>>      ENH: Use new linking system macros
>>      PERF: Avoid searching private dependencies for include directories
>>      COMP: Recover missing dependencies
>>      ENH: use new linking macros in Filtering module
>>
>>
>>
>> -----------------------------------------------------
>> Errors or omissions? Please fix them here:
>>
>>
>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-users

From skalexander at gmail.com  Wed Nov 25 10:55:10 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Wed, 25 Nov 2015 15:55:10 +0000
Subject: [ITK] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is ready
	for testing!
In-Reply-To: <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
Message-ID: <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>

Sorry, if I wasn't clear - I submitted two builds yesterday from SIMON-LAP,
(actually 3 as I wasn't sure the config was right on the first one).
VS2013 was green, three failures on VS2015  (and 18 warnings).  Looks like
a truncation problem on the resuts.

On Wed, 25 Nov 2015 at 10:51 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Simon,
>
> Thanks for testing.
>
> We have a Visual Studio 2015 build on the dashboard that is green:
>
>   https://open.cdash.org/buildSummary.php?buildid=4117955
>
> Are there any different flags? Could you please submit an Experimental
> build?
>
>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit -C
> Release
>
> from a fresh build tree.
>
> Thanks,
> Matt
>
> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <skalexander at gmail.com>
> wrote:
> > Looks like a few problems with x64 build on visual studio 2015 - do you
> have
> > a test machine in this configuration?
> >
> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <matt.mccormick at kitware.com>
> > wrote:
> >>
> >> On behalf of the Insight Toolkit community, we are proud to announce
> that
> >> ITK 4.9 release candidate 1 has been tagged and is available for
> testing!
> >>
> >> Please take this opportunity to test the new features in the release
> >> candidate.
> >>
> >>
> >> To obtain the source code,
> >>
> >>   git clone http://itk.org/ITK.git
> >>  cd ITK
> >>  git checkout -q --detach v4.9rc01
> >>
> >> For more details, please see the Git documentation [1].
> >>
> >>
> >> A few selected highlights for this release:
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * New Remote modules: the Cuberille module for smooth generation of
> meshes
> >> from binary segmentation images, and the AnisotropicDiffusionLBR module
> >> improved edge-preserving smoothing.
> >> * Build your own ITK module outside the source tree, add continuous
> >> integration testing on GitHub, and easily add Python wrapping for your
> C++
> >> algorithms.
> >> * Python wrapping, including Python 3, builds faster with a more
> standard
> >> installation
> >> * Improved performance of itk::Image::GetPixel and operations on
> >> itk::VariableLengthVector?s
> >> * Generate a FlatStructuringElement from an image
> >> * Point-set registration with time-varying B-splines
> >> * Module dependencies can now be specified as public / private /
> compile /
> >> test
> >>
> >>
> >> Please test the release candidate and share your experiences on the
> >> mailing list, issue tracker, and Gerrit Code Review. The new module
> >> dependency specification mechanism may unearth missing dependencies for
> >> projects that use ITK COMPONENTS with the CMake find_package command.
> >>
> >>
> >> An Experimental build, which demonstrates how the test suite performs on
> >> your local build system, can be submitted to the dashboard [2] with:
> >>
> >>   mkdir ../ITK-build
> >>   cd ../ITK-build
> >>   cmake ../ITK
> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
> >>
> >> Visual Studio builds must also add ?-C Release? to the ctest command.
> >>
> >> Notify the mailing list if there are any unexpected failures.  Testing
> >> your own applications against the RC is also appreciated.
> >>
> >>
> >> Congratulations and well done to the 35 contributors to this release. We
> >> would especially like to recognize the new contributors: Mikhail Isakov,
> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
> Odutola,
> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson, Luc
> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
> >>
> >>
> >> The final release is scheduled for mid-December.
> >>
> >>
> >> [1] http://www.itk.org/Wiki/ITK/Git
> >>
> >> [2] http://open.cdash.org/index.php?project=Insight
> >>
> >>
> >>
> >> New Features
> >> ---------------------
> >>
> >> Wrapping improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Python 3 supported
> >> * Wrapping builds much faster due to CastXML binaries
> >> * LandmarkBasedTransformInitializer now wrapped
> >> * NumPy bridge with VisualStudio
> >> * Wrapping for the MinimalPathExtraction module
> >> * Wrapping is now installed into Python?s site-packages directory in the
> >> ?itk? package
> >> * Wrapping package size is decreased
> >> * Better package portability on Mac OSX
> >>
> >>
> >> New Remote Modules
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Cuberille
> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
> >> * AnisotropicDiffusionLBR
> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
> >>    * Web browser reproducibility:
> >> http://www.kitware.com/blog/home/post/942
> >>
> >>
> >> Core Improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * External Modules can now be developed outside of the ITK source tree
> and
> >> on GitHub
> >>    * Details: http://www.kitware.com/blog/home/post/997
> >> * New utilities in itk::Math:
> >>    * AlmostEquals
> >>    * NotAlmostEquals
> >>    * ExactlyEquals
> >>    * NotExactlyEquals
> >> * New itk::NumericTraits
> >>    * IsInteger
> >>    * IsSigned
> >> * Improved C++11 support
> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
> >> * Improved capabilities of itk::ResourceProbe and
> >> itk::ResourceProbesCollectorBase
> >> * Improve numerical stability in VNL eigen system estimation
> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
> >>
> >>
> >> Filtering Improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Generate a FlatStructuringElement from an image
> >> * WarpImageFilter support VectorImage?s
> >> * ConvertLabelMap supports different LabelMap types
> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase module
> >>
> >>
> >> Registration Improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Point-set registration with time-varying B-splines
> >>
> >>
> >> Build Improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Module dependencies can now be specified as public / private /
> compile /
> >> test
> >> * BUILD_EXAMPLES CMake option is now OFF by default
> >> * Option to export all library symbols on Windows:
> >>    * Details: http://www.kitware.com/blog/home/post/939
> >> * Expat third party library is now name mangled
> >> * Many more modules can be built as shared libraries
> >> * KWStyle is automatically built and configured when tests are built
> >>
> >>
> >> Performance Improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
> >> metaprogramming
> >>    * itk::mpl::{TrueType,FalseType}
> >>    * itk::mpl::{If,Not,And,Or,Xor}
> >>    * itk::mpl::EnableIf
> >>    * itk::mpl::IsBaseOf
> >>    * itk::mpl::IsConvertible
> >>    * itk::mpl::IsNumber
> >>    * itk::mpl::IsSame
> >>    * itk::mpl::PromoteType
> >> * Image::GetPixel performance improvements
> >> * Many itk::VariableLengthVector performance improvements
> >> * AdaptiveHistogramEqualization uses a moving histogram
> >> * WarpImageFilter performance improvements
> >>
> >>
> >> Documentation Improvements
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
> >> * ITK Software Guide improvements
> >>    * How to use Python wrapping
> >>    * How to create an ITK module
> >>    * Improvements to segmentation examples
> >>    * Expanded Canny edge detection example
> >>    * Expanded tree container example
> >>
> >>
> >> Third Party Library Updates
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * FFTW updated to latest upstream
> >> * Build with recent OpenCV 2 and 3
> >> * Build with the latest VTK
> >> * PNG update to the latest upstream
> >> * GDCM updated to the latest upstream
> >> * KWSys updated to the latest upstream
> >> * MINC updated to the latest upstream
> >> * SWIG updated to the latest upstream
> >> * Third party PNG and MINC are now Git subtrees
> >>
> >>
> >> Style improvements -- ITK gets more stylish with every release!
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
> >>
> >>
> >> Improved code coverage -- we are at 84.9%!
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >>
> >> * *Lots* of important bug fixes
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >>
> >> * And much more! See details in the log below.
> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >>
> >>
> >>
> >> Changes from v4.8.0..v4.9rc01
> >> --------------------------------------------
> >>
> >>
> >> Abhishek Tiwari (1):
> >>      BUG: "tmpImageIndex" not initialized to 0.
> >>
> >> Adam Snyder (1):
> >>      PERF: Reworked MMI Threading using a per-thread buffer
> >>
> >> Alexander Leinoff (6):
> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to itkMath.h
> >>      COMP: Removes floating-point equality checks
> >>      ENH: COMP: Adds support for complex values to Math::AlmostEquals
> >>      ENH: Updates fftw dependency
> >>
> >> Arnaud Gelas (5):
> >>      COMP: fix warning (unused local typedef)
> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
> >>      DOC: add doxgen documentation for BinaryImageToLevelSetImageAdaptor
> >>      ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
> >>
> >> Betsy McPhail (1):
> >>      BUG: Improve buffer alignment in OctreeNode .
> >>
> >> Bill Hoffman (2):
> >>      ENH: Use new CMake Windows export symbol dll feature.
> >>      COMP: Put vnl_export.h in the list of sources so it gets installed.
> >>
> >> Bill Lorensen (4):
> >>      COMP: VTkGlue linker errors
> >>      BUG: Inappropriate use of AlmostEquals
> >>      ENH: Bump tag for wiki examples
> >>      ENH: Better layout strategy
> >>
> >> Brad King (3):
> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
> >>      ENH: Update CMake Policy settings in Testing/TestExternal project
> >>
> >> Bradley Lowekamp (31):
> >>      BUG: Avoid null deference in PrintSelf with default construction
> >>      ENH: Enable base classes for templates of landmark initializer
> >>      STYLE: Use "Swap" for ITK member name
> >>      BUG: Demonstrate Eigen analysis failure
> >>      BUG: Fix computation of Eigen analysis
> >>      ENH: Update DiscreteHessianGaussian Test baseline
> >>      ENH: Correctly demonstrate float point Eigen failure
> >>      ENH: compile vnl_math_hypot, and use at least double
> >>      ENH: Adding initial update script from used libpng version.
> >>      ENH: removing non-subtree files for itkpng
> >>      ENH: Ported ITK changes for building to subtree merged code
> >>      ENH: Update libpng update script for v1.6.9
> >>      BUG: Use ParameterValueType for computation of landmark affine
> >>      ENH: Wrap LandmarkBasedTransformInitializer
> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >>      ENH: Update itkpng zlib, configuration, and rename
> >>      ENH: Update itkpng name mangling
> >>      BUG: Use const pointer in Set method for constant ReferenceImage
> ivar
> >>      BUG: Increase tolerance for PhysicsBasedNonRigidRegistrationMethod
> >>      BUG: Demonstrate side effect on registration due to BSplineScatter
> >> change
> >>      ENH: Move MovingHistogramImageFilter base classes to
> ImageFilterBase
> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >>      BUG: Avoid null deference in PrintSelf with default construction
> >>      BUG: Use const pointer in Set method for constant ReferenceImage
> ivar
> >>      ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram
> base
> >>      COMP: address sign unsigned comparison warning
> >>      COMP: Address signed unsigned comparison warning
> >>      COMP: Address unused member variable and methods in anonymous ns
> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold range
> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
> >>      BUG: Reduce number of targets with MSVC
> >>
> >> Davis Vigneault (7):
> >>      DOC: Minor improvements to segmentation examples.
> >>      DOC: Expanded Canny Edge Detection Example
> >>      DOC: Expanded TreeContainer Example
> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >>      COMP: Update Git Tag for Subdivision Module
> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >>
> >> D?enan Zuki? (1):
> >>      STYLE: better formatting of the "usage" message
> >>
> >> Eugene Prilepin (1):
> >>      BUG: Fix a template name formation in python wrappings
> >>
> >> Floris Berendsen (1):
> >>      STYLE: Improve naming conventions in comments.
> >>
> >> Hans Johnson (29):
> >>      STYLE: Instrument for FixedParameters typedef
> >>      BUG: Demonstrate DisplacementTransformFailure
> >>      BUG: FixedParameters should be double precision
> >>      STYLE: Minor code style issues for MGHIO
> >>      COMP: Update to version for WikiExamples
> >>      ENH: Update Sphinx for ITK 4.8.0
> >>      ENH: Update MGHIO to be shared lib
> >>      ENH: Provide consistent floating point comparisons
> >>      BUG: Fix MGHIO to fix write failures
> >>      PERF: Remove floating point as sentinal value
> >>      COMP: Const correctness needs to be maintained
> >>      BUG: Preserve backwards compatibility
> >>      DOC: Provide consistent naming in comments
> >>      ENH: Conversion between transform type tolerance
> >>      STYLE: Prefer initialization to assignment
> >>      ENH: Missing ITK_OVERRIDE
> >>      COMP: Need to propagate ITKGDCM
> >>      COMP: Need to propagate ITKGDCM
> >>      COMP: Add missing ITK_OVERRIDE
> >>      STYLE: Minor code style issues for MGHIO
> >>      COMP: Update to version for WikiExamples
> >>      ENH: Update Sphinx for ITK 4.8.0
> >>      ENH: Update MGHIO to be shared lib
> >>      BUG: Fix MGHIO to fix write failures
> >>      ENH: C++11 allows for rigorous =delete
> >>      COMP: Remove unnecessary failing assert test
> >>      ENH: Ignore internal files for the Clion editor
> >>      COMP: Fix VNL compilation for wider C++11 support
> >>      BUG: In configuration test need to mirror code
> >>
> >> Hyun Jae Kang (27):
> >>      BUG: Remove std::cout calls from class
> >>      BUG: Avoid an unexpected output of static_cast
> >>      BUG: Update python example codes for ImageRegistration
> >>      BUG: Retrieve the missed wrap file
> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> >> header.
> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared libraries
> >>      BUG: Fixed older XCode linking error
> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
> >>      BUG: Remove std::cout calls from class
> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> >> header.
> >>      BUG: Fixed older XCode linking error
> >>      ENH: Add automatic KWStyle build and configuration setup
> >>      COMP: KWStyle shadow, format-nonliteral and autological-compare
> >> warning.
> >>      COMP: Fixed the warning messages from itkGPU Module
> >>      COMP: Fixed a warning message of unused-private-field
> >>      COMP: Apply latest version of KWStyle
> >>      COMP: Update KWStyle to fix its additional warning messages
> >>      COMP: Update KWStyle to fix its additional warning messages
> >>      COMP: Fix data-conversion warning messages on Windows
> >>      ENH: Update itkResourceProbe to calculate statistical data
> >>      COMP: Fix data-conversion warning messages on VS14
> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
> >>      ENH: Update the Report() function of itkResourceProbesCollectorBase
> >>      COMP: Fix data-conversion warning message on itkResourceProbe
> >>      COMP: Fix additional warning messages of KWStyle
> >>      COMP: Fix data-conversion warning messages
> >>
> >> Jon Haitz Legarreta (6):
> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
> >>      BUG: Fix compilation issues for StatisticsUniqueLabelMapFilterTest
> >>      BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
> >>      ENH: Improve code coverage for
> >> itkParametricSpaceToImageSpaceMeshFilter
> >>
> >> Julien Michel (1):
> >>      ENH: Support of VectorImage as template parameters for
> >> WarpImageFilter
> >>
> >> Junjie Bai (2):
> >>      BUG: ConvertLabelMap with different LabelMapTypes
> >>      BUG: LabelObject CopyAttribute support different LabelObject type
> >>
> >> KWSys Robot (4):
> >>      KWSys 2015-07-10 (c9336bcf)
> >>      KWSys 2015-07-30 (f63febb7)
> >>      KWSys 2015-08-24 (cdaf522c)
> >>      KWSys 2015-08-28 (dc3fdd7f)
> >>
> >> LIBPNG Upstream (2):
> >>      PNG 2009-04-06 (e68f5a36)
> >>      PNG 2014-02-05 (3e753eb8)
> >>
> >> Laurentiu Nicola (2):
> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
> >>
> >> Luc Hermitte (8):
> >>      PERF: itk::Image::GetPixel() performance improvment.
> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
> >>      BUG: Error in VariableLengthVector Unit Tests
> >>      PERF: Performance enhancements on VLV 2/...
> >>      PERF: Performances enhancements on VLV 3/...
> >>      COMP: Fix signed/unsigned warnings
> >>      BUG: std::copy/fill on empty VLV
> >>
> >> Lucas Gandel (4):
> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
> >>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
> >>      STYLE: Fix KWStyle dashboard errors
> >>      BUG: Fix external module BUILD_SHARED_LIBS status
> >>
> >> Mathieu Malaterre (1):
> >>      BUG: Name mangle the included expat third party library.
> >>
> >> Matthew McCormick (94):
> >>      ENH: Change itkSystemInformationTest to itkCMakeConfigurationTest.
> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
> >>      ENH: Bump ITK version to 4.9.0.
> >>      BUG: Remove std::cout calls from classes.
> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >>      BUG: Implement UpdateLargestPossibleRegion for
> ImageToVTKImageFilter.
> >>      COMP: Add link interface specification for wrapping
> >> target_link_libraries.
> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
> >>      COMP: Fix MINCTransformIO factory registration.
> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
> >>      COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
> >>      BUG: Initialize mutex for 32 bit AtomicInt.
> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
> >>      COMP: Disable the gold linker for static builds on Ubuntu 14.04.
> >>      ENH: Use Windows binaries for CastXML.
> >>      ENH: Add better scoping in igenerator.py.
> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
> >>      BUG: LevelSetsv4 used signed char instead of char.
> >>      ENH: Add better scoping to idx.py.
> >>      COMP: Define newSize and oldSize in VariableLengthVector.
> >>      STYLE: Use prefix increment operator in ImageBase.
> >>      DOC: Correct spelling of Continuous.
> >>      ENH: Add more progress information to IterativeClosestPoint2.
> >>      BUG: Build BridgeNumPy with Visual Studio.
> >>      ENH: Add ITKModuleExternal.cmake
> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
> >>      BUG: Use CastXML binary built in Release.
> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
> >>      COMP: Set CMP0054 to new.
> >>      COMP: Address line length too long for Software Guide.
> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
> >>      BUG: Support Python 3 wrapping module initialization.
> >>      BUG: Update itkTemplate.py for Python 3.
> >>      BUG: Update itkExtras.py for Python 3.
> >>      BUG: Prevent Python callback addition recursion.
> >>      BUG: Fix test scripts for Python 3.
> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
> >>      ENH: Allow projects to build against an external module.
> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
> >>      ENH: Rename _cable_ to _wrappers_.
> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
> >>      ENH: Bump CastXML version to 2015-30-29.
> >>      ENH: Bump LLVM / Clang to 3.7.0.
> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
> >>      COMP: Add missing ITKIOImageBase dependency for ITKTransformMINC.
> >>      COMP: Use itkSimpleNewMacro in
> ThreadedIteratorRangePartitionerTest.
> >>      ENH: Add wrapping support for building modules externally.
> >>      BUG: Fix KWStyle test paths when building a module externally.
> >>      ENH: Add Cuberille Remote module.
> >>      COMP: Remove carriage returns from Cuberille remote.
> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >>      DOC: Correct spelling of Continuous.
> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
> >>      STYLE: Use prefix increment operator in ImageBase.
> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
> >>      Revert "COMP: Put vnl_export.h in the list of sources so it gets
> >> installed."
> >>      BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
> >>      ENH: Marking wrapping CMake configuration variables as advanced.
> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
> >>      COMP: Non-virtual copy attribute members in LabelMap cannot have
> >> override.
> >>      COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
> >>      BUG: Improve KWStyle ExternalProject utilization.
> >>      ENH: Remove old KWStyle build script.
> >>      COMP: Address VariableLengthVector Doxygen rhs @param not found.
> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
> >>      ENH: Install Python bindings into site-packages.
> >>      ENH: Improve readability of Python site-packages path detection.
> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
> >> warning.
> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
> >>      ENH: Improves names and export of module dependencies.
> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
> >>      COMP: Set CMP0054 to new.
> >>      BUG: Remove unused wrapping files.
> >>      BUG: Do install install wrapping development files.
> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
> >>      BUG: Remove duplicate inclusion of wrapping submodules.
> >>      COMP: Do not use C++ style comments for Doxygen cond.
> >>      BUG: Fix detection of the gold linker.
> >>      BUG: Update Python package installation locations.
> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
> >>      ENH: Change BUILD_EXAMPLES default to OFF.
> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
> >>      COMP: Link to VTK Python when built with Kits support.
> >>      BUG: Install itk_minc2.h header.
> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
> >>
> >> Michka Popoff (9):
> >>      ENH: Update to swig 3.0.7
> >>      ENH: Do not link against specific Python library on OS X
> >>      COMP: Fix wrapping warnings when building with
> ITK_WRAP_IMAGE_DIMS=2
> >>      COMP: Add missing wrapping for TransformBase
> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
> >>      COMP: Disable incompatible modules when using Python 3 wrapping
> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
> ImageFilterBase
> >> module
> >>      COMP: Disable incompatible modules when using Python 3 wrapping
> >>      ENH: Allow operations on Indexes and Offsets in Python
> >>
> >> Mikhail Isakov (1):
> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
> >>
> >> Nick Tustison (5):
> >>      BUG:  Set a default b-spline epsilon.
> >>      ENH: Adding testing for closed loop.
> >>      BUG:  Updating B-spline classes with the same epsilon strategy.
> >>      PERF:  Switch vnl_vectors for fixed arrays.
> >>      ENH:  Point-set registration with time-varying B-spline.
> >>
> >> Olivier Commowick (3):
> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen
> >> system
> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from pythag
> >> from V3P)
> >>      BUG: Switch eigenvalues computation to double
> >>
> >> Pablo Hernandez-Cerdan (2):
> >>      ENH: Help class for itkFlatStructuringElement with constructor from
> >> images.
> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
> >>
> >> Seun Odutola (1):
> >>      COMP: Fixed name clash with Apple header (check Macro), renamed
> check
> >> to Check
> >>
> >> Shawn Waldon (1):
> >>      COMP: Set target OS X version in environment for tools using
> compiler
> >>
> >> Simon Alexander (1):
> >>      BUG: incorrect closest point computation
> >>
> >> Tobias Wood (2):
> >>      BUG: LBFGSB was printing messages even with debug switched off.
> >>      BUG: Removed an unguarded print statement.
> >>
> >> Vladimir S. FONOV (9):
> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
> >>      COMP: Changing the order of HDF5 library components
> >>      COMP: Splitting up IOMINC module into two parts: MINC and Transform
> >>      STYLE: updated comments to properly reference LIBMINC
> >>      ENH: Add script to merge upstream MINC as a subtree
> >>      MINC 2015-07-23 (c033d431)
> >>      COMP: Update MINC CMake code
> >>      MINC 2015-08-18 (6d7e3ba8)
> >>      MINC 2015-09-13 (95cd5374)
> >>
> >> Xiaoxiao Liu (1):
> >>      DOC: update email address for xiaoxiao.
> >>
> >> Zach Williamson (10):
> >>      BUG: Use correct libraries for ImageFusion tests
> >>      ENH: Consolidate Library Dependencies
> >>      COMP: Add a missing link to Review module
> >>      COMP: Use correct linking macro in DCMTK
> >>      BUG: Use correct libraries for TestKernel tests
> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
> >>      ENH: Use new linking system macros
> >>      PERF: Avoid searching private dependencies for include directories
> >>      COMP: Recover missing dependencies
> >>      ENH: use new linking macros in Filtering module
> >>
> >>
> >>
> >> -----------------------------------------------------
> >> Errors or omissions? Please fix them here:
> >>
> >>
> >>
> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
> >> _____________________________________
> >> Powered by www.kitware.com
> >>
> >> Visit other Kitware open-source projects at
> >> http://www.kitware.com/opensource/opensource.html
> >>
> >> Kitware offers ITK Training Courses, for more information visit:
> >> http://www.kitware.com/products/protraining.php
> >>
> >> Please keep messages on-topic and check the ITK FAQ at:
> >> http://www.itk.org/Wiki/ITK_FAQ
> >>
> >> Follow this link to subscribe/unsubscribe:
> >> http://public.kitware.com/mailman/listinfo/insight-users
>
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From matt.mccormick at kitware.com  Wed Nov 25 11:01:32 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 25 Nov 2015 11:01:32 -0500
Subject: [ITK] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is ready
	for testing!
In-Reply-To: <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
Message-ID: <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>

Ah, cool!  Here:

 https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158

Could you please look into the test failures?

@Hyun Jae, could you please look into the KWStyle warnings?

Thanks,
Matt


On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <skalexander at gmail.com> wrote:
> Sorry, if I wasn't clear - I submitted two builds yesterday from SIMON-LAP,
> (actually 3 as I wasn't sure the config was right on the first one).  VS2013
> was green, three failures on VS2015  (and 18 warnings).  Looks like a
> truncation problem on the resuts.
>
> On Wed, 25 Nov 2015 at 10:51 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>>
>> Hi Simon,
>>
>> Thanks for testing.
>>
>> We have a Visual Studio 2015 build on the dashboard that is green:
>>
>>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>
>> Are there any different flags? Could you please submit an Experimental
>> build?
>>
>>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit -C
>> Release
>>
>> from a fresh build tree.
>>
>> Thanks,
>> Matt
>>
>> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>> > Looks like a few problems with x64 build on visual studio 2015 - do you
>> > have
>> > a test machine in this configuration?
>> >
>> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <matt.mccormick at kitware.com>
>> > wrote:
>> >>
>> >> On behalf of the Insight Toolkit community, we are proud to announce
>> >> that
>> >> ITK 4.9 release candidate 1 has been tagged and is available for
>> >> testing!
>> >>
>> >> Please take this opportunity to test the new features in the release
>> >> candidate.
>> >>
>> >>
>> >> To obtain the source code,
>> >>
>> >>   git clone http://itk.org/ITK.git
>> >>  cd ITK
>> >>  git checkout -q --detach v4.9rc01
>> >>
>> >> For more details, please see the Git documentation [1].
>> >>
>> >>
>> >> A few selected highlights for this release:
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * New Remote modules: the Cuberille module for smooth generation of
>> >> meshes
>> >> from binary segmentation images, and the AnisotropicDiffusionLBR module
>> >> improved edge-preserving smoothing.
>> >> * Build your own ITK module outside the source tree, add continuous
>> >> integration testing on GitHub, and easily add Python wrapping for your
>> >> C++
>> >> algorithms.
>> >> * Python wrapping, including Python 3, builds faster with a more
>> >> standard
>> >> installation
>> >> * Improved performance of itk::Image::GetPixel and operations on
>> >> itk::VariableLengthVector?s
>> >> * Generate a FlatStructuringElement from an image
>> >> * Point-set registration with time-varying B-splines
>> >> * Module dependencies can now be specified as public / private /
>> >> compile /
>> >> test
>> >>
>> >>
>> >> Please test the release candidate and share your experiences on the
>> >> mailing list, issue tracker, and Gerrit Code Review. The new module
>> >> dependency specification mechanism may unearth missing dependencies for
>> >> projects that use ITK COMPONENTS with the CMake find_package command.
>> >>
>> >>
>> >> An Experimental build, which demonstrates how the test suite performs
>> >> on
>> >> your local build system, can be submitted to the dashboard [2] with:
>> >>
>> >>   mkdir ../ITK-build
>> >>   cd ../ITK-build
>> >>   cmake ../ITK
>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
>> >>
>> >> Visual Studio builds must also add ?-C Release? to the ctest command.
>> >>
>> >> Notify the mailing list if there are any unexpected failures.  Testing
>> >> your own applications against the RC is also appreciated.
>> >>
>> >>
>> >> Congratulations and well done to the 35 contributors to this release.
>> >> We
>> >> would especially like to recognize the new contributors: Mikhail
>> >> Isakov,
>> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>> >> Odutola,
>> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson,
>> >> Luc
>> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>> >>
>> >>
>> >> The final release is scheduled for mid-December.
>> >>
>> >>
>> >> [1] http://www.itk.org/Wiki/ITK/Git
>> >>
>> >> [2] http://open.cdash.org/index.php?project=Insight
>> >>
>> >>
>> >>
>> >> New Features
>> >> ---------------------
>> >>
>> >> Wrapping improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Python 3 supported
>> >> * Wrapping builds much faster due to CastXML binaries
>> >> * LandmarkBasedTransformInitializer now wrapped
>> >> * NumPy bridge with VisualStudio
>> >> * Wrapping for the MinimalPathExtraction module
>> >> * Wrapping is now installed into Python?s site-packages directory in
>> >> the
>> >> ?itk? package
>> >> * Wrapping package size is decreased
>> >> * Better package portability on Mac OSX
>> >>
>> >>
>> >> New Remote Modules
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Cuberille
>> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>> >> * AnisotropicDiffusionLBR
>> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>> >>    * Web browser reproducibility:
>> >> http://www.kitware.com/blog/home/post/942
>> >>
>> >>
>> >> Core Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * External Modules can now be developed outside of the ITK source tree
>> >> and
>> >> on GitHub
>> >>    * Details: http://www.kitware.com/blog/home/post/997
>> >> * New utilities in itk::Math:
>> >>    * AlmostEquals
>> >>    * NotAlmostEquals
>> >>    * ExactlyEquals
>> >>    * NotExactlyEquals
>> >> * New itk::NumericTraits
>> >>    * IsInteger
>> >>    * IsSigned
>> >> * Improved C++11 support
>> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>> >> * Improved capabilities of itk::ResourceProbe and
>> >> itk::ResourceProbesCollectorBase
>> >> * Improve numerical stability in VNL eigen system estimation
>> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>> >>
>> >>
>> >> Filtering Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Generate a FlatStructuringElement from an image
>> >> * WarpImageFilter support VectorImage?s
>> >> * ConvertLabelMap supports different LabelMap types
>> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>> >> module
>> >>
>> >>
>> >> Registration Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Point-set registration with time-varying B-splines
>> >>
>> >>
>> >> Build Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Module dependencies can now be specified as public / private /
>> >> compile /
>> >> test
>> >> * BUILD_EXAMPLES CMake option is now OFF by default
>> >> * Option to export all library symbols on Windows:
>> >>    * Details: http://www.kitware.com/blog/home/post/939
>> >> * Expat third party library is now name mangled
>> >> * Many more modules can be built as shared libraries
>> >> * KWStyle is automatically built and configured when tests are built
>> >>
>> >>
>> >> Performance Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
>> >> metaprogramming
>> >>    * itk::mpl::{TrueType,FalseType}
>> >>    * itk::mpl::{If,Not,And,Or,Xor}
>> >>    * itk::mpl::EnableIf
>> >>    * itk::mpl::IsBaseOf
>> >>    * itk::mpl::IsConvertible
>> >>    * itk::mpl::IsNumber
>> >>    * itk::mpl::IsSame
>> >>    * itk::mpl::PromoteType
>> >> * Image::GetPixel performance improvements
>> >> * Many itk::VariableLengthVector performance improvements
>> >> * AdaptiveHistogramEqualization uses a moving histogram
>> >> * WarpImageFilter performance improvements
>> >>
>> >>
>> >> Documentation Improvements
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>> >> * ITK Software Guide improvements
>> >>    * How to use Python wrapping
>> >>    * How to create an ITK module
>> >>    * Improvements to segmentation examples
>> >>    * Expanded Canny edge detection example
>> >>    * Expanded tree container example
>> >>
>> >>
>> >> Third Party Library Updates
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * FFTW updated to latest upstream
>> >> * Build with recent OpenCV 2 and 3
>> >> * Build with the latest VTK
>> >> * PNG update to the latest upstream
>> >> * GDCM updated to the latest upstream
>> >> * KWSys updated to the latest upstream
>> >> * MINC updated to the latest upstream
>> >> * SWIG updated to the latest upstream
>> >> * Third party PNG and MINC are now Git subtrees
>> >>
>> >>
>> >> Style improvements -- ITK gets more stylish with every release!
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>> >>
>> >>
>> >> Improved code coverage -- we are at 84.9%!
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >>
>> >> * *Lots* of important bug fixes
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >>
>> >> * And much more! See details in the log below.
>> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >>
>> >>
>> >>
>> >> Changes from v4.8.0..v4.9rc01
>> >> --------------------------------------------
>> >>
>> >>
>> >> Abhishek Tiwari (1):
>> >>      BUG: "tmpImageIndex" not initialized to 0.
>> >>
>> >> Adam Snyder (1):
>> >>      PERF: Reworked MMI Threading using a per-thread buffer
>> >>
>> >> Alexander Leinoff (6):
>> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>> >> itkMath.h
>> >>      COMP: Removes floating-point equality checks
>> >>      ENH: COMP: Adds support for complex values to Math::AlmostEquals
>> >>      ENH: Updates fftw dependency
>> >>
>> >> Arnaud Gelas (5):
>> >>      COMP: fix warning (unused local typedef)
>> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>> >>      DOC: add doxgen documentation for
>> >> BinaryImageToLevelSetImageAdaptor
>> >>      ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
>> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>> >>
>> >> Betsy McPhail (1):
>> >>      BUG: Improve buffer alignment in OctreeNode .
>> >>
>> >> Bill Hoffman (2):
>> >>      ENH: Use new CMake Windows export symbol dll feature.
>> >>      COMP: Put vnl_export.h in the list of sources so it gets
>> >> installed.
>> >>
>> >> Bill Lorensen (4):
>> >>      COMP: VTkGlue linker errors
>> >>      BUG: Inappropriate use of AlmostEquals
>> >>      ENH: Bump tag for wiki examples
>> >>      ENH: Better layout strategy
>> >>
>> >> Brad King (3):
>> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>> >>      ENH: Update CMake Policy settings in Testing/TestExternal project
>> >>
>> >> Bradley Lowekamp (31):
>> >>      BUG: Avoid null deference in PrintSelf with default construction
>> >>      ENH: Enable base classes for templates of landmark initializer
>> >>      STYLE: Use "Swap" for ITK member name
>> >>      BUG: Demonstrate Eigen analysis failure
>> >>      BUG: Fix computation of Eigen analysis
>> >>      ENH: Update DiscreteHessianGaussian Test baseline
>> >>      ENH: Correctly demonstrate float point Eigen failure
>> >>      ENH: compile vnl_math_hypot, and use at least double
>> >>      ENH: Adding initial update script from used libpng version.
>> >>      ENH: removing non-subtree files for itkpng
>> >>      ENH: Ported ITK changes for building to subtree merged code
>> >>      ENH: Update libpng update script for v1.6.9
>> >>      BUG: Use ParameterValueType for computation of landmark affine
>> >>      ENH: Wrap LandmarkBasedTransformInitializer
>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >>      ENH: Update itkpng zlib, configuration, and rename
>> >>      ENH: Update itkpng name mangling
>> >>      BUG: Use const pointer in Set method for constant ReferenceImage
>> >> ivar
>> >>      BUG: Increase tolerance for PhysicsBasedNonRigidRegistrationMethod
>> >>      BUG: Demonstrate side effect on registration due to BSplineScatter
>> >> change
>> >>      ENH: Move MovingHistogramImageFilter base classes to
>> >> ImageFilterBase
>> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >>      BUG: Avoid null deference in PrintSelf with default construction
>> >>      BUG: Use const pointer in Set method for constant ReferenceImage
>> >> ivar
>> >>      ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram
>> >> base
>> >>      COMP: address sign unsigned comparison warning
>> >>      COMP: Address signed unsigned comparison warning
>> >>      COMP: Address unused member variable and methods in anonymous ns
>> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>> >> range
>> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>> >>      BUG: Reduce number of targets with MSVC
>> >>
>> >> Davis Vigneault (7):
>> >>      DOC: Minor improvements to segmentation examples.
>> >>      DOC: Expanded Canny Edge Detection Example
>> >>      DOC: Expanded TreeContainer Example
>> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >>      COMP: Update Git Tag for Subdivision Module
>> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >>
>> >> D?enan Zuki? (1):
>> >>      STYLE: better formatting of the "usage" message
>> >>
>> >> Eugene Prilepin (1):
>> >>      BUG: Fix a template name formation in python wrappings
>> >>
>> >> Floris Berendsen (1):
>> >>      STYLE: Improve naming conventions in comments.
>> >>
>> >> Hans Johnson (29):
>> >>      STYLE: Instrument for FixedParameters typedef
>> >>      BUG: Demonstrate DisplacementTransformFailure
>> >>      BUG: FixedParameters should be double precision
>> >>      STYLE: Minor code style issues for MGHIO
>> >>      COMP: Update to version for WikiExamples
>> >>      ENH: Update Sphinx for ITK 4.8.0
>> >>      ENH: Update MGHIO to be shared lib
>> >>      ENH: Provide consistent floating point comparisons
>> >>      BUG: Fix MGHIO to fix write failures
>> >>      PERF: Remove floating point as sentinal value
>> >>      COMP: Const correctness needs to be maintained
>> >>      BUG: Preserve backwards compatibility
>> >>      DOC: Provide consistent naming in comments
>> >>      ENH: Conversion between transform type tolerance
>> >>      STYLE: Prefer initialization to assignment
>> >>      ENH: Missing ITK_OVERRIDE
>> >>      COMP: Need to propagate ITKGDCM
>> >>      COMP: Need to propagate ITKGDCM
>> >>      COMP: Add missing ITK_OVERRIDE
>> >>      STYLE: Minor code style issues for MGHIO
>> >>      COMP: Update to version for WikiExamples
>> >>      ENH: Update Sphinx for ITK 4.8.0
>> >>      ENH: Update MGHIO to be shared lib
>> >>      BUG: Fix MGHIO to fix write failures
>> >>      ENH: C++11 allows for rigorous =delete
>> >>      COMP: Remove unnecessary failing assert test
>> >>      ENH: Ignore internal files for the Clion editor
>> >>      COMP: Fix VNL compilation for wider C++11 support
>> >>      BUG: In configuration test need to mirror code
>> >>
>> >> Hyun Jae Kang (27):
>> >>      BUG: Remove std::cout calls from class
>> >>      BUG: Avoid an unexpected output of static_cast
>> >>      BUG: Update python example codes for ImageRegistration
>> >>      BUG: Retrieve the missed wrap file
>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
>> >> header.
>> >>      BUG: Fix HDF5 CMake configuration with VS2015
>> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>> >> libraries
>> >>      BUG: Fixed older XCode linking error
>> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>> >>      BUG: Remove std::cout calls from class
>> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
>> >> header.
>> >>      BUG: Fixed older XCode linking error
>> >>      ENH: Add automatic KWStyle build and configuration setup
>> >>      COMP: KWStyle shadow, format-nonliteral and autological-compare
>> >> warning.
>> >>      COMP: Fixed the warning messages from itkGPU Module
>> >>      COMP: Fixed a warning message of unused-private-field
>> >>      COMP: Apply latest version of KWStyle
>> >>      COMP: Update KWStyle to fix its additional warning messages
>> >>      COMP: Update KWStyle to fix its additional warning messages
>> >>      COMP: Fix data-conversion warning messages on Windows
>> >>      ENH: Update itkResourceProbe to calculate statistical data
>> >>      COMP: Fix data-conversion warning messages on VS14
>> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
>> >>      ENH: Update the Report() function of
>> >> itkResourceProbesCollectorBase
>> >>      COMP: Fix data-conversion warning message on itkResourceProbe
>> >>      COMP: Fix additional warning messages of KWStyle
>> >>      COMP: Fix data-conversion warning messages
>> >>
>> >> Jon Haitz Legarreta (6):
>> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>> >>      BUG: Fix compilation issues for StatisticsUniqueLabelMapFilterTest
>> >>      BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
>> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>> >>      ENH: Improve code coverage for
>> >> itkParametricSpaceToImageSpaceMeshFilter
>> >>
>> >> Julien Michel (1):
>> >>      ENH: Support of VectorImage as template parameters for
>> >> WarpImageFilter
>> >>
>> >> Junjie Bai (2):
>> >>      BUG: ConvertLabelMap with different LabelMapTypes
>> >>      BUG: LabelObject CopyAttribute support different LabelObject type
>> >>
>> >> KWSys Robot (4):
>> >>      KWSys 2015-07-10 (c9336bcf)
>> >>      KWSys 2015-07-30 (f63febb7)
>> >>      KWSys 2015-08-24 (cdaf522c)
>> >>      KWSys 2015-08-28 (dc3fdd7f)
>> >>
>> >> LIBPNG Upstream (2):
>> >>      PNG 2009-04-06 (e68f5a36)
>> >>      PNG 2014-02-05 (3e753eb8)
>> >>
>> >> Laurentiu Nicola (2):
>> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>> >>
>> >> Luc Hermitte (8):
>> >>      PERF: itk::Image::GetPixel() performance improvment.
>> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
>> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>> >>      BUG: Error in VariableLengthVector Unit Tests
>> >>      PERF: Performance enhancements on VLV 2/...
>> >>      PERF: Performances enhancements on VLV 3/...
>> >>      COMP: Fix signed/unsigned warnings
>> >>      BUG: std::copy/fill on empty VLV
>> >>
>> >> Lucas Gandel (4):
>> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>> >>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
>> >>      STYLE: Fix KWStyle dashboard errors
>> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>> >>
>> >> Mathieu Malaterre (1):
>> >>      BUG: Name mangle the included expat third party library.
>> >>
>> >> Matthew McCormick (94):
>> >>      ENH: Change itkSystemInformationTest to itkCMakeConfigurationTest.
>> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>> >>      ENH: Bump ITK version to 4.9.0.
>> >>      BUG: Remove std::cout calls from classes.
>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >>      BUG: Implement UpdateLargestPossibleRegion for
>> >> ImageToVTKImageFilter.
>> >>      COMP: Add link interface specification for wrapping
>> >> target_link_libraries.
>> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>> >>      COMP: Fix MINCTransformIO factory registration.
>> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>> >>      COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
>> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>> >>      COMP: Disable the gold linker for static builds on Ubuntu 14.04.
>> >>      ENH: Use Windows binaries for CastXML.
>> >>      ENH: Add better scoping in igenerator.py.
>> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>> >>      BUG: LevelSetsv4 used signed char instead of char.
>> >>      ENH: Add better scoping to idx.py.
>> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>> >>      STYLE: Use prefix increment operator in ImageBase.
>> >>      DOC: Correct spelling of Continuous.
>> >>      ENH: Add more progress information to IterativeClosestPoint2.
>> >>      BUG: Build BridgeNumPy with Visual Studio.
>> >>      ENH: Add ITKModuleExternal.cmake
>> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>> >>      BUG: Use CastXML binary built in Release.
>> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>> >>      COMP: Set CMP0054 to new.
>> >>      COMP: Address line length too long for Software Guide.
>> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>> >>      BUG: Support Python 3 wrapping module initialization.
>> >>      BUG: Update itkTemplate.py for Python 3.
>> >>      BUG: Update itkExtras.py for Python 3.
>> >>      BUG: Prevent Python callback addition recursion.
>> >>      BUG: Fix test scripts for Python 3.
>> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>> >>      ENH: Allow projects to build against an external module.
>> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>> >>      ENH: Rename _cable_ to _wrappers_.
>> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>> >>      ENH: Bump CastXML version to 2015-30-29.
>> >>      ENH: Bump LLVM / Clang to 3.7.0.
>> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>> >>      COMP: Add missing ITKIOImageBase dependency for ITKTransformMINC.
>> >>      COMP: Use itkSimpleNewMacro in
>> >> ThreadedIteratorRangePartitionerTest.
>> >>      ENH: Add wrapping support for building modules externally.
>> >>      BUG: Fix KWStyle test paths when building a module externally.
>> >>      ENH: Add Cuberille Remote module.
>> >>      COMP: Remove carriage returns from Cuberille remote.
>> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >>      DOC: Correct spelling of Continuous.
>> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>> >>      STYLE: Use prefix increment operator in ImageBase.
>> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >>      Revert "COMP: Put vnl_export.h in the list of sources so it gets
>> >> installed."
>> >>      BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
>> >>      ENH: Marking wrapping CMake configuration variables as advanced.
>> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>> >>      COMP: Non-virtual copy attribute members in LabelMap cannot have
>> >> override.
>> >>      COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
>> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>> >>      BUG: Improve KWStyle ExternalProject utilization.
>> >>      ENH: Remove old KWStyle build script.
>> >>      COMP: Address VariableLengthVector Doxygen rhs @param not found.
>> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
>> >>      ENH: Install Python bindings into site-packages.
>> >>      ENH: Improve readability of Python site-packages path detection.
>> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
>> >> warning.
>> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>> >>      ENH: Improves names and export of module dependencies.
>> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>> >>      COMP: Set CMP0054 to new.
>> >>      BUG: Remove unused wrapping files.
>> >>      BUG: Do install install wrapping development files.
>> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>> >>      COMP: Do not use C++ style comments for Doxygen cond.
>> >>      BUG: Fix detection of the gold linker.
>> >>      BUG: Update Python package installation locations.
>> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>> >>      COMP: Link to VTK Python when built with Kits support.
>> >>      BUG: Install itk_minc2.h header.
>> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>> >>
>> >> Michka Popoff (9):
>> >>      ENH: Update to swig 3.0.7
>> >>      ENH: Do not link against specific Python library on OS X
>> >>      COMP: Fix wrapping warnings when building with
>> >> ITK_WRAP_IMAGE_DIMS=2
>> >>      COMP: Add missing wrapping for TransformBase
>> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>> >> ImageFilterBase
>> >> module
>> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>> >>      ENH: Allow operations on Indexes and Offsets in Python
>> >>
>> >> Mikhail Isakov (1):
>> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline image
>> >>
>> >> Nick Tustison (5):
>> >>      BUG:  Set a default b-spline epsilon.
>> >>      ENH: Adding testing for closed loop.
>> >>      BUG:  Updating B-spline classes with the same epsilon strategy.
>> >>      PERF:  Switch vnl_vectors for fixed arrays.
>> >>      ENH:  Point-set registration with time-varying B-spline.
>> >>
>> >> Olivier Commowick (3):
>> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen
>> >> system
>> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from pythag
>> >> from V3P)
>> >>      BUG: Switch eigenvalues computation to double
>> >>
>> >> Pablo Hernandez-Cerdan (2):
>> >>      ENH: Help class for itkFlatStructuringElement with constructor
>> >> from
>> >> images.
>> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
>> >>
>> >> Seun Odutola (1):
>> >>      COMP: Fixed name clash with Apple header (check Macro), renamed
>> >> check
>> >> to Check
>> >>
>> >> Shawn Waldon (1):
>> >>      COMP: Set target OS X version in environment for tools using
>> >> compiler
>> >>
>> >> Simon Alexander (1):
>> >>      BUG: incorrect closest point computation
>> >>
>> >> Tobias Wood (2):
>> >>      BUG: LBFGSB was printing messages even with debug switched off.
>> >>      BUG: Removed an unguarded print statement.
>> >>
>> >> Vladimir S. FONOV (9):
>> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>> >>      COMP: Changing the order of HDF5 library components
>> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>> >> Transform
>> >>      STYLE: updated comments to properly reference LIBMINC
>> >>      ENH: Add script to merge upstream MINC as a subtree
>> >>      MINC 2015-07-23 (c033d431)
>> >>      COMP: Update MINC CMake code
>> >>      MINC 2015-08-18 (6d7e3ba8)
>> >>      MINC 2015-09-13 (95cd5374)
>> >>
>> >> Xiaoxiao Liu (1):
>> >>      DOC: update email address for xiaoxiao.
>> >>
>> >> Zach Williamson (10):
>> >>      BUG: Use correct libraries for ImageFusion tests
>> >>      ENH: Consolidate Library Dependencies
>> >>      COMP: Add a missing link to Review module
>> >>      COMP: Use correct linking macro in DCMTK
>> >>      BUG: Use correct libraries for TestKernel tests
>> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>> >>      ENH: Use new linking system macros
>> >>      PERF: Avoid searching private dependencies for include directories
>> >>      COMP: Recover missing dependencies
>> >>      ENH: use new linking macros in Filtering module
>> >>
>> >>
>> >>
>> >> -----------------------------------------------------
>> >> Errors or omissions? Please fix them here:
>> >>
>> >>
>> >>
>> >> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>> >> _____________________________________
>> >> Powered by www.kitware.com
>> >>
>> >> Visit other Kitware open-source projects at
>> >> http://www.kitware.com/opensource/opensource.html
>> >>
>> >> Kitware offers ITK Training Courses, for more information visit:
>> >> http://www.kitware.com/products/protraining.php
>> >>
>> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> http://www.itk.org/Wiki/ITK_FAQ
>> >>
>> >> Follow this link to subscribe/unsubscribe:
>> >> http://public.kitware.com/mailman/listinfo/insight-users

From matt.mccormick at kitware.com  Wed Nov 25 11:09:59 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 25 Nov 2015 11:09:59 -0500
Subject: [ITK] [ITK-users] FW: ITK Python wrapping
In-Reply-To: <50B858FB5F53124F9E32314E5C1B409435AFEA63@MBX112.d.ethz.ch>
References: <50B858FB5F53124F9E32314E5C1B409435ACEA2D@MBX212.d.ethz.ch>
 <CALzTN-R2_viV6Y0-AkNpmicZTOaaA98E99ReZSoWkU6tb_xuYQ@mail.gmail.com>
 <50B858FB5F53124F9E32314E5C1B409435ACEB17@MBX212.d.ethz.ch>
 <CALzTN-R3f+fi5pRze+a68d14YgLcYJPCnwwjPnz5Fm9W4hBV8A@mail.gmail.com>
 <50B858FB5F53124F9E32314E5C1B409435ACECAC@MBX212.d.ethz.ch>
 <CALzTN-SX9vduwxUSTi-XFVStWLCTYCdGccjEPy6a+XiEtH1Ryg@mail.gmail.com>
 <50B858FB5F53124F9E32314E5C1B409435ACED36@MBX212.d.ethz.ch>
 <CALzTN-SH7qnfGH_qHoXib6iVOf_W0kHnDDtVsC3oHhp7j5YEcg@mail.gmail.com>
 <50B858FB5F53124F9E32314E5C1B409435ACEE97@MBX212.d.ethz.ch>
 <50B858FB5F53124F9E32314E5C1B409435AFE854@MBX112.d.ethz.ch>
 <CALzTN-SLOrgf=EsFwgL1jK5_3JzasbwjCKr5_jCY97ot=c4+Kg@mail.gmail.com>
 <50B858FB5F53124F9E32314E5C1B409435AFEA63@MBX112.d.ethz.ch>
Message-ID: <CALzTN-RK2NadMv4drc3r_83aLbCG-myXtto6P+Dxk_PXBtm3eg@mail.gmail.com>

Hi Fabio,

There is some description in the .GetTypes() function here:

 http://itk.org/ITKSoftwareGuide/html/Book1/ITKSoftwareGuide-Book1ch3.html#x34-410003.7

The possible data types are explained here:

  http://review.source.kitware.com/#/c/19958/

which was merged and should show up in the HTML version online tomorrow.

Thanks,
Matt

On Tue, Nov 24, 2015 at 7:37 AM, D'Isidoro  Fabio <fisidoro at ethz.ch> wrote:
> Thanks, I will try Ipython.
>
> I still haven't find documentation for ITK Python, i.e. I would like to know all possible data types (as "itk.UC"), for example I want to use unsigned int (I assume it's itk.UI but I don't know it..). I can't find where this is explained.
>
> Thank you
>
> ----------------------------------------------------------------------
> Fabio D?Isidoro
> PhD Student ? Institute for Biomechanics, ETH Z?rich
> HPP O 14, Schafmattstrasse 30, 8093 Zuerich, Switzerland
> Tel: +41 44 633 40 60
>
>
> -----Original Message-----
> From: Matt McCormick [mailto:matt.mccormick at kitware.com]
> Sent: Montag, 23. November 2015 22:23
> To: D'Isidoro Fabio
> Cc: insight-users at itk.org
> Subject: Re: [ITK-users] FW: ITK Python wrapping
>
> Dear Fabio,
>
> To debug an ITK Python script, the ITK Python wrappings do not need to be built with a Debug CMake build type -- any Python interpreter or IDE can be used for debugging. At a basic level, the pdb Python module gives gdb like functionality [1]. Newer versions of Visual Studio also have better Python integration. Or, there are many other very nice Python IDE's out there.  My personal favorite Python development and debugging tool is IPython [2].
>
>
> For ITK 4.9, the Python development guidelines in the ITK Software Guide were improved based on your feedback in addition to other improvements [3].  Also, the registration examples in the source tree were updated [4] [5] [6] along with a new Sphinx example [7].
>
> Python wrapping also builds more quickly in ITK 4.9.
>
> The first ITK 4.9 release candidate will be announced soon, and your testing and feedback will be appreciated.
>
> Thanks,
> Matt
>
>
> [1] https://docs.python.org/3.5/library/pdb.html
>
> [2] http://ipython.org/
>
> [3] http://itk.org/ITKSoftwareGuide/html/Book1/ITKSoftwareGuide-Book1ch3.html#x34-410003.7
>
> [4] https://github.com/InsightSoftwareConsortium/ITK/blob/547729e58d25692877f29938d19b2b1a8530ca86/Examples/RegistrationITKv4/ImageRegistration3.py
>
> [5] https://github.com/InsightSoftwareConsortium/ITK/blob/547729e58d25692877f29938d19b2b1a8530ca86/Examples/RegistrationITKv4/ImageRegistration4.py
>
> [6] https://github.com/InsightSoftwareConsortium/ITK/blob/547729e58d25692877f29938d19b2b1a8530ca86/Examples/RegistrationITKv4/ImageRegistration5.py
>
> [7] http://itk.org/ITKExamples/src/Registration/Common/Perform2DTranslationRegistrationWithMeanSquares/Documentation.html
>
> On Mon, Nov 23, 2015 at 3:38 PM, D'Isidoro  Fabio <fisidoro at ethz.ch> wrote:
>> Hi Matt,
>>
>> Since my ITK with Python wrapping build on Visual Studio 2012 worked only in RELEASE mode (while not in Debug), my projects succeed to build only in Release mode (because there is no Debug folder with all the necessary compiled libraries and pyd files). That means that I cannot Debug step by step my codes with breakpoints (that works only in Debug mode in Visual Studio), and makes it impossible programming.
>>
>> What's your solution?
>>
>> Thank you!
>>
>> ----------------------------------------------------------------------
>> Fabio D?Isidoro
>> PhD Student ? Institute for Biomechanics, ETH Z?rich HPP O 14,
>> Schafmattstrasse 30, 8093 Zuerich, Switzerland
>> Tel: +41 44 633 40 60
>>
>> -----Original Message-----
>> From: Insight-users [mailto:insight-users-bounces at itk.org] On Behalf
>> Of D'Isidoro Fabio
>> Sent: Mittwoch, 26. August 2015 16:42
>> To: Matt McCormick
>> Cc: insight-users at itk.org
>> Subject: Re: [ITK-users] FW: ITK Python wrapping
>>
>> Hi Matt,
>>
>> I did the build again and this time everything is working properly :)
>>
>> As a summary of my issue: the key factor is that building ITK with Python Wrapping on Visual Studio on DEBUG mode did not produced the required *.pyd files. So in the guide you may want to remind an unexperienced Windows user that the build should be performed on RELEADE mode. My second problem was that the build did not work the first time for one of the modules.
>>
>> Just to figure out how to write in python with itk: I was trying to be lucky and to run an example similar to the example ImageRegistration3.py in the Examples folder of InsightToolkit-4.8.0 (in attachment). I start the code with 'import itk'. However fixedImageReader  = itk.ImageFileReaderF2.New()' returns an error. Is this an old version and should I just write ' fixedImageReader  = itk.ImageFileReader[ImageType].New()' instead?
>>
>> Which guide should I look for figuring these things out?
>>
>> Thank you for your valuable support.
>>
>> -----Original Message-----
>> From: Matt McCormick [mailto:matt.mccormick at kitware.com]
>> Sent: Dienstag, 25. August 2015 18:38
>> To: D'Isidoro Fabio
>> Cc: insight-users at itk.org
>> Subject: Re: FW: [ITK-users] ITK Python wrapping
>>
>> Hi Fabio,
>>
>> We are making good progress :-).
>>
>> The build log indicates that the build did not complete correctly:
>>
>>            Traceback (most recent call last):
>>            File
>> "C:/Users/difabio/ITK/InsightToolkit-4.8.0/Wrapping/Generators/SwigInt
>> erface/igenerator.py",
>> line 923, in <module>
>>              with open(options.typedef_output, "w") as f:
>>          IOError: [Errno 13] Permission denied:
>> 'E:/ITK/ITK_bin_Win64_Python_Wrap/Wrapping/Typedefs/itkAffineTransformSwigInterface.h'
>>      1>C:\Program Files
>> (x86)\MSBuild\Microsoft.Cpp\v4.0\V110\Microsoft.CppCommon.targets(172,5):
>> error MSB6006: "cmd.exe" exited with code 1.
>>      1>Done Building Project
>> "E:\ITK\ITK_bin_Win64_Python_Wrap\Wrapping\Modules\ITKTransform\ITKTransformPython.vcxproj"
>> (Build target(s)) -- FAILED.
>>
>> Please make sure the directory is writable, and run the build again.
>> Sometimes, for example, anti-virus software can interfere with a build, and it should be disabled on a build directory.
>>
>> Hope this helps,
>> Matt
>>
>> On Tue, Aug 25, 2015 at 11:25 AM, D'Isidoro  Fabio <fisidoro at ethz.ch> wrote:
>>> Hi Matt,
>>>
>>> Thank you. Actually I have the .dll in the bin/release.
>>>
>>> Shortly, I (redundantly) added then ITKbuild/bin, ITKbuild/bin/release, ITKbuild/lib, ITKbuild/lib/release to BOTH my PATH environmental variable and the WrapITK.pth. Still not working, however I have a new error (see attachment 'error').
>>>
>>> Therefore I went to check the ITKTransformPython module but it's not there in lib/Release where all other .lib files relative to the other modules are. I went in the directory shown in attachment 'directory' (it's in the Wrapping/Module/.. directory) and found a  log file (attachment): the build of this module failed (I check other modules and there build there did not fail). Could you please read the log? Why did just this module fail?
>>>
>>> Thank you again!
>>>
>>> -----Original Message-----
>>> From: Matt McCormick [mailto:matt.mccormick at kitware.com]
>>> Sent: Dienstag, 25. August 2015 16:31
>>> To: D'Isidoro Fabio; insight-users at itk.org
>>> Subject: Re: FW: [ITK-users] ITK Python wrapping
>>>
>>> Hi Fabio,
>>>
>>> Thanks for the updates.
>>>
>>> The apparent errors are not actual errors.  These result when CMake configuration runs (indicated by the preceding "--"), and CMake tests the availability of compiler features with try_compiles [1].  If an error occurs, then that feature is not used in the build.
>>>
>>> It is good to see that the *.pyd files are there and your Python path.
>>> There should still be *.dll files whose folder needs to be added to the PATH system environmental variable.  These are usually in the "bin" instead of "lib" directory. Search for a file "ITKCommon-4.8.dll" if you built ITK 4.8.
>>>
>>> Hope this helps,
>>> Matt
>>>
>>> PS. Please reply-to-all so conversations remain on the mailing lists.
>>>
>>> [1] http://www.cmake.org/cmake/help/v3.3/command/try_compile.html
>>>
>>> On Tue, Aug 25, 2015 at 3:02 AM, D'Isidoro  Fabio <fisidoro at ethz.ch> wrote:
>>>> Sorry forgot the attachments
>>>>
>>>> -----Original Message-----
>>>> From: D'Isidoro Fabio
>>>> Sent: Dienstag, 25. August 2015 09:01
>>>> To: 'Matt McCormick'
>>>> Subject: RE: [ITK-users] ITK Python wrapping
>>>>
>>>> One more thing: in the guide it's written to add to the PATH the directories containing the .dll files, suggesting ITKbuild, ITKbuild/bin and ITKbuild/bin/Release.
>>>>
>>>> However as you can see from the attachments the suggested directory has only executables, while the .lib files (I don't have .dll files) are in the ITKbuild/lib/Release (second attachment)...
>>>>
>>>> Anyway I tried to add the the ITKbuild/lib/Release directory to the PATH but it did not work either.
>>>>
>>>>
>>>> -----Original Message-----
>>>> From: Matt McCormick [mailto:matt.mccormick at kitware.com]
>>>> Sent: Montag, 24. August 2015 17:08
>>>> To: D'Isidoro Fabio
>>>> Cc: insight-users at itk.org
>>>> Subject: Re: [ITK-users] ITK Python wrapping
>>>>
>>>> Hi Fabio,
>>>>
>>>>> - Well, I have a ITKPyBasePython.pyc file in the ITK lib (and the things you told me to check are allright). So the difference is that the name has no underscore _ITKPyBasePython (as reported in the error) and the extension is pyc rather than pyd (although I have read it should not make the difference). Are those things relevant? If yes, how to correct for them? Maybe the dlls were not properly compiled so the underscore is missing?
>>>>
>>>> Both the .pyc and the .pyd files are required.
>>>>
>>>>
>>>>> Depending on your reply to this email, I will then try to build ITK with Python wrapping again so that I can report the compilation failures I got regarding CastXML.
>>>>
>>>> Great, thank you.  A Release build instead of a Debug build is recommended -- build size and runtime performance are greatly improved.  There is on going work to substantially decrease the wrapping build time in ITK Git master, but it is currently unstable.
>>>> The 4.8.0 release is recommended until that is resolved.
>>>>
>>>>
>>>>> About the symbolic link, I just read on the guide "ln -s /path/to/ITK-Wrapped/Wrapping/Generators/Python/WrapITK.pth" and went to find out what ln -s was ... but you are right, the guide says to copy the file, so I guess you don't have improve this part. Maybe just specifiy that there is no need to download Swig.
>>>>
>>>> Thanks for the feedback.  We will improve the wrapping process description.
>>>>
>>>>
>>>>> Thank you, I have spent 5 long days already with no success on this issue (which seems to me a very common issue for users willing to use the Python wrapping, from my extensive google search).
>>>>
>>>> Yes, wrapping has been difficult in the past, but things are changing.
>>>> With your help, it will improve even quicker :-).
>>>>
>>>>
>>>> Thanks,
>>>> Matt
_____________________________________
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From matt.mccormick at kitware.com  Wed Nov 25 11:11:27 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 25 Nov 2015 11:11:27 -0500
Subject: [ITK] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is ready
	for	testing!
In-Reply-To: <CAJYHnFKz-dWExf8UWJUuBB1A1DQequ34=0vcwHsyhc7X7waWjA@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJYHnFKz-dWExf8UWJUuBB1A1DQequ34=0vcwHsyhc7X7waWjA@mail.gmail.com>
Message-ID: <CALzTN-RoGLosE+T-1SjD=LEYdnha-WqLq_4OxCaShouqKGqWRg@mail.gmail.com>

Hi Mihail,

Is it possible to share the code and data to reproduce this issue?

Thanks,
Matt

On Wed, Nov 25, 2015 at 11:08 AM, Mihail Isakov via Insight-users
<insight-users at itk.org> wrote:
> Hello,
> not 100% sure,  but looks like  i can not open "*.nii.gz" files
> directly (" Can not create ImageIO for ..."),  tried different build
> options without success (system zlib on/off etc) ... never has this
> problem before...
>
>
> Regards,
> Mihail
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From matt.mccormick at kitware.com  Wed Nov 25 11:11:27 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Wed, 25 Nov 2015 11:11:27 -0500
Subject: [ITK] [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1
	is	ready for testing!
In-Reply-To: <CAJYHnFKz-dWExf8UWJUuBB1A1DQequ34=0vcwHsyhc7X7waWjA@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJYHnFKz-dWExf8UWJUuBB1A1DQequ34=0vcwHsyhc7X7waWjA@mail.gmail.com>
Message-ID: <CALzTN-RoGLosE+T-1SjD=LEYdnha-WqLq_4OxCaShouqKGqWRg@mail.gmail.com>

Hi Mihail,

Is it possible to share the code and data to reproduce this issue?

Thanks,
Matt

On Wed, Nov 25, 2015 at 11:08 AM, Mihail Isakov via Insight-users
<insight-users at itk.org> wrote:
> Hello,
> not 100% sure,  but looks like  i can not open "*.nii.gz" files
> directly (" Can not create ImageIO for ..."),  tried different build
> options without success (system zlib on/off etc) ... never has this
> problem before...
>
>
> Regards,
> Mihail
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
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From skalexander at gmail.com  Wed Nov 25 11:29:40 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Wed, 25 Nov 2015 16:29:40 +0000
Subject: [ITK] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is ready
	for testing!
In-Reply-To: <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
Message-ID: <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>

Two of the three failures look like truncation issues (like
https://open.cdash.org/testDetails.php?test=395263772&build=4117158)

The other (
https://open.cdash.org/testDetails.php?test=395264938&build=4117158)  is
less obvious.

If I have time this evening I'll try and have a look at these.

Is your standard test build in 32 bit ?  That might explain the difference
if there are some underlying type assumptions, but not obvious why 2015
would trigger but not 2013.



On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Ah, cool!  Here:
>
>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>
> Could you please look into the test failures?
>
> @Hyun Jae, could you please look into the KWStyle warnings?
>
> Thanks,
> Matt
>
>
> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <skalexander at gmail.com>
> wrote:
> > Sorry, if I wasn't clear - I submitted two builds yesterday from
> SIMON-LAP,
> > (actually 3 as I wasn't sure the config was right on the first one).
> VS2013
> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
> > truncation problem on the resuts.
> >
> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <matt.mccormick at kitware.com>
> > wrote:
> >>
> >> Hi Simon,
> >>
> >> Thanks for testing.
> >>
> >> We have a Visual Studio 2015 build on the dashboard that is green:
> >>
> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
> >>
> >> Are there any different flags? Could you please submit an Experimental
> >> build?
> >>
> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit -C
> >> Release
> >>
> >> from a fresh build tree.
> >>
> >> Thanks,
> >> Matt
> >>
> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <skalexander at gmail.com
> >
> >> wrote:
> >> > Looks like a few problems with x64 build on visual studio 2015 - do
> you
> >> > have
> >> > a test machine in this configuration?
> >> >
> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
> matt.mccormick at kitware.com>
> >> > wrote:
> >> >>
> >> >> On behalf of the Insight Toolkit community, we are proud to announce
> >> >> that
> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
> >> >> testing!
> >> >>
> >> >> Please take this opportunity to test the new features in the release
> >> >> candidate.
> >> >>
> >> >>
> >> >> To obtain the source code,
> >> >>
> >> >>   git clone http://itk.org/ITK.git
> >> >>  cd ITK
> >> >>  git checkout -q --detach v4.9rc01
> >> >>
> >> >> For more details, please see the Git documentation [1].
> >> >>
> >> >>
> >> >> A few selected highlights for this release:
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * New Remote modules: the Cuberille module for smooth generation of
> >> >> meshes
> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
> module
> >> >> improved edge-preserving smoothing.
> >> >> * Build your own ITK module outside the source tree, add continuous
> >> >> integration testing on GitHub, and easily add Python wrapping for
> your
> >> >> C++
> >> >> algorithms.
> >> >> * Python wrapping, including Python 3, builds faster with a more
> >> >> standard
> >> >> installation
> >> >> * Improved performance of itk::Image::GetPixel and operations on
> >> >> itk::VariableLengthVector?s
> >> >> * Generate a FlatStructuringElement from an image
> >> >> * Point-set registration with time-varying B-splines
> >> >> * Module dependencies can now be specified as public / private /
> >> >> compile /
> >> >> test
> >> >>
> >> >>
> >> >> Please test the release candidate and share your experiences on the
> >> >> mailing list, issue tracker, and Gerrit Code Review. The new module
> >> >> dependency specification mechanism may unearth missing dependencies
> for
> >> >> projects that use ITK COMPONENTS with the CMake find_package command.
> >> >>
> >> >>
> >> >> An Experimental build, which demonstrates how the test suite performs
> >> >> on
> >> >> your local build system, can be submitted to the dashboard [2] with:
> >> >>
> >> >>   mkdir ../ITK-build
> >> >>   cd ../ITK-build
> >> >>   cmake ../ITK
> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
> >> >>
> >> >> Visual Studio builds must also add ?-C Release? to the ctest command.
> >> >>
> >> >> Notify the mailing list if there are any unexpected failures.
> Testing
> >> >> your own applications against the RC is also appreciated.
> >> >>
> >> >>
> >> >> Congratulations and well done to the 35 contributors to this release.
> >> >> We
> >> >> would especially like to recognize the new contributors: Mikhail
> >> >> Isakov,
> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
> >> >> Odutola,
> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson,
> >> >> Luc
> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
> >> >>
> >> >>
> >> >> The final release is scheduled for mid-December.
> >> >>
> >> >>
> >> >> [1] http://www.itk.org/Wiki/ITK/Git
> >> >>
> >> >> [2] http://open.cdash.org/index.php?project=Insight
> >> >>
> >> >>
> >> >>
> >> >> New Features
> >> >> ---------------------
> >> >>
> >> >> Wrapping improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Python 3 supported
> >> >> * Wrapping builds much faster due to CastXML binaries
> >> >> * LandmarkBasedTransformInitializer now wrapped
> >> >> * NumPy bridge with VisualStudio
> >> >> * Wrapping for the MinimalPathExtraction module
> >> >> * Wrapping is now installed into Python?s site-packages directory in
> >> >> the
> >> >> ?itk? package
> >> >> * Wrapping package size is decreased
> >> >> * Better package portability on Mac OSX
> >> >>
> >> >>
> >> >> New Remote Modules
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Cuberille
> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
> >> >> * AnisotropicDiffusionLBR
> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
> >> >>    * Web browser reproducibility:
> >> >> http://www.kitware.com/blog/home/post/942
> >> >>
> >> >>
> >> >> Core Improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * External Modules can now be developed outside of the ITK source
> tree
> >> >> and
> >> >> on GitHub
> >> >>    * Details: http://www.kitware.com/blog/home/post/997
> >> >> * New utilities in itk::Math:
> >> >>    * AlmostEquals
> >> >>    * NotAlmostEquals
> >> >>    * ExactlyEquals
> >> >>    * NotExactlyEquals
> >> >> * New itk::NumericTraits
> >> >>    * IsInteger
> >> >>    * IsSigned
> >> >> * Improved C++11 support
> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
> >> >> * Improved capabilities of itk::ResourceProbe and
> >> >> itk::ResourceProbesCollectorBase
> >> >> * Improve numerical stability in VNL eigen system estimation
> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
> >> >>
> >> >>
> >> >> Filtering Improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Generate a FlatStructuringElement from an image
> >> >> * WarpImageFilter support VectorImage?s
> >> >> * ConvertLabelMap supports different LabelMap types
> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
> >> >> module
> >> >>
> >> >>
> >> >> Registration Improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Point-set registration with time-varying B-splines
> >> >>
> >> >>
> >> >> Build Improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Module dependencies can now be specified as public / private /
> >> >> compile /
> >> >> test
> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
> >> >> * Option to export all library symbols on Windows:
> >> >>    * Details: http://www.kitware.com/blog/home/post/939
> >> >> * Expat third party library is now name mangled
> >> >> * Many more modules can be built as shared libraries
> >> >> * KWStyle is automatically built and configured when tests are built
> >> >>
> >> >>
> >> >> Performance Improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
> >> >> metaprogramming
> >> >>    * itk::mpl::{TrueType,FalseType}
> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
> >> >>    * itk::mpl::EnableIf
> >> >>    * itk::mpl::IsBaseOf
> >> >>    * itk::mpl::IsConvertible
> >> >>    * itk::mpl::IsNumber
> >> >>    * itk::mpl::IsSame
> >> >>    * itk::mpl::PromoteType
> >> >> * Image::GetPixel performance improvements
> >> >> * Many itk::VariableLengthVector performance improvements
> >> >> * AdaptiveHistogramEqualization uses a moving histogram
> >> >> * WarpImageFilter performance improvements
> >> >>
> >> >>
> >> >> Documentation Improvements
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
> >> >> * ITK Software Guide improvements
> >> >>    * How to use Python wrapping
> >> >>    * How to create an ITK module
> >> >>    * Improvements to segmentation examples
> >> >>    * Expanded Canny edge detection example
> >> >>    * Expanded tree container example
> >> >>
> >> >>
> >> >> Third Party Library Updates
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * FFTW updated to latest upstream
> >> >> * Build with recent OpenCV 2 and 3
> >> >> * Build with the latest VTK
> >> >> * PNG update to the latest upstream
> >> >> * GDCM updated to the latest upstream
> >> >> * KWSys updated to the latest upstream
> >> >> * MINC updated to the latest upstream
> >> >> * SWIG updated to the latest upstream
> >> >> * Third party PNG and MINC are now Git subtrees
> >> >>
> >> >>
> >> >> Style improvements -- ITK gets more stylish with every release!
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
> >> >>
> >> >>
> >> >> Improved code coverage -- we are at 84.9%!
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >>
> >> >> * *Lots* of important bug fixes
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >>
> >> >> * And much more! See details in the log below.
> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >> >>
> >> >>
> >> >>
> >> >> Changes from v4.8.0..v4.9rc01
> >> >> --------------------------------------------
> >> >>
> >> >>
> >> >> Abhishek Tiwari (1):
> >> >>      BUG: "tmpImageIndex" not initialized to 0.
> >> >>
> >> >> Adam Snyder (1):
> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
> >> >>
> >> >> Alexander Leinoff (6):
> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
> >> >> itkMath.h
> >> >>      COMP: Removes floating-point equality checks
> >> >>      ENH: COMP: Adds support for complex values to Math::AlmostEquals
> >> >>      ENH: Updates fftw dependency
> >> >>
> >> >> Arnaud Gelas (5):
> >> >>      COMP: fix warning (unused local typedef)
> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
> >> >>      DOC: add doxgen documentation for
> >> >> BinaryImageToLevelSetImageAdaptor
> >> >>      ENH: add tests to exercise itk::ThreadedIteratorRangePartitioner
> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
> >> >>
> >> >> Betsy McPhail (1):
> >> >>      BUG: Improve buffer alignment in OctreeNode .
> >> >>
> >> >> Bill Hoffman (2):
> >> >>      ENH: Use new CMake Windows export symbol dll feature.
> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
> >> >> installed.
> >> >>
> >> >> Bill Lorensen (4):
> >> >>      COMP: VTkGlue linker errors
> >> >>      BUG: Inappropriate use of AlmostEquals
> >> >>      ENH: Bump tag for wiki examples
> >> >>      ENH: Better layout strategy
> >> >>
> >> >> Brad King (3):
> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
> project
> >> >>
> >> >> Bradley Lowekamp (31):
> >> >>      BUG: Avoid null deference in PrintSelf with default construction
> >> >>      ENH: Enable base classes for templates of landmark initializer
> >> >>      STYLE: Use "Swap" for ITK member name
> >> >>      BUG: Demonstrate Eigen analysis failure
> >> >>      BUG: Fix computation of Eigen analysis
> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
> >> >>      ENH: Correctly demonstrate float point Eigen failure
> >> >>      ENH: compile vnl_math_hypot, and use at least double
> >> >>      ENH: Adding initial update script from used libpng version.
> >> >>      ENH: removing non-subtree files for itkpng
> >> >>      ENH: Ported ITK changes for building to subtree merged code
> >> >>      ENH: Update libpng update script for v1.6.9
> >> >>      BUG: Use ParameterValueType for computation of landmark affine
> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >> >>      ENH: Update itkpng zlib, configuration, and rename
> >> >>      ENH: Update itkpng name mangling
> >> >>      BUG: Use const pointer in Set method for constant ReferenceImage
> >> >> ivar
> >> >>      BUG: Increase tolerance for
> PhysicsBasedNonRigidRegistrationMethod
> >> >>      BUG: Demonstrate side effect on registration due to
> BSplineScatter
> >> >> change
> >> >>      ENH: Move MovingHistogramImageFilter base classes to
> >> >> ImageFilterBase
> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
> >> >>      BUG: Avoid null deference in PrintSelf with default construction
> >> >>      BUG: Use const pointer in Set method for constant ReferenceImage
> >> >> ivar
> >> >>      ENH: Optimize AdaptiveHistogramEqualization with MovingHistogram
> >> >> base
> >> >>      COMP: address sign unsigned comparison warning
> >> >>      COMP: Address signed unsigned comparison warning
> >> >>      COMP: Address unused member variable and methods in anonymous ns
> >> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
> >> >> range
> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
> >> >>      BUG: Reduce number of targets with MSVC
> >> >>
> >> >> Davis Vigneault (7):
> >> >>      DOC: Minor improvements to segmentation examples.
> >> >>      DOC: Expanded Canny Edge Detection Example
> >> >>      DOC: Expanded TreeContainer Example
> >> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >> >>      COMP: Update Git Tag for Subdivision Module
> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
> >> >>
> >> >> D?enan Zuki? (1):
> >> >>      STYLE: better formatting of the "usage" message
> >> >>
> >> >> Eugene Prilepin (1):
> >> >>      BUG: Fix a template name formation in python wrappings
> >> >>
> >> >> Floris Berendsen (1):
> >> >>      STYLE: Improve naming conventions in comments.
> >> >>
> >> >> Hans Johnson (29):
> >> >>      STYLE: Instrument for FixedParameters typedef
> >> >>      BUG: Demonstrate DisplacementTransformFailure
> >> >>      BUG: FixedParameters should be double precision
> >> >>      STYLE: Minor code style issues for MGHIO
> >> >>      COMP: Update to version for WikiExamples
> >> >>      ENH: Update Sphinx for ITK 4.8.0
> >> >>      ENH: Update MGHIO to be shared lib
> >> >>      ENH: Provide consistent floating point comparisons
> >> >>      BUG: Fix MGHIO to fix write failures
> >> >>      PERF: Remove floating point as sentinal value
> >> >>      COMP: Const correctness needs to be maintained
> >> >>      BUG: Preserve backwards compatibility
> >> >>      DOC: Provide consistent naming in comments
> >> >>      ENH: Conversion between transform type tolerance
> >> >>      STYLE: Prefer initialization to assignment
> >> >>      ENH: Missing ITK_OVERRIDE
> >> >>      COMP: Need to propagate ITKGDCM
> >> >>      COMP: Need to propagate ITKGDCM
> >> >>      COMP: Add missing ITK_OVERRIDE
> >> >>      STYLE: Minor code style issues for MGHIO
> >> >>      COMP: Update to version for WikiExamples
> >> >>      ENH: Update Sphinx for ITK 4.8.0
> >> >>      ENH: Update MGHIO to be shared lib
> >> >>      BUG: Fix MGHIO to fix write failures
> >> >>      ENH: C++11 allows for rigorous =delete
> >> >>      COMP: Remove unnecessary failing assert test
> >> >>      ENH: Ignore internal files for the Clion editor
> >> >>      COMP: Fix VNL compilation for wider C++11 support
> >> >>      BUG: In configuration test need to mirror code
> >> >>
> >> >> Hyun Jae Kang (27):
> >> >>      BUG: Remove std::cout calls from class
> >> >>      BUG: Avoid an unexpected output of static_cast
> >> >>      BUG: Update python example codes for ImageRegistration
> >> >>      BUG: Retrieve the missed wrap file
> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> >> >> header.
> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
> >> >> libraries
> >> >>      BUG: Fixed older XCode linking error
> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
> >> >>      BUG: Remove std::cout calls from class
> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK file
> >> >> header.
> >> >>      BUG: Fixed older XCode linking error
> >> >>      ENH: Add automatic KWStyle build and configuration setup
> >> >>      COMP: KWStyle shadow, format-nonliteral and autological-compare
> >> >> warning.
> >> >>      COMP: Fixed the warning messages from itkGPU Module
> >> >>      COMP: Fixed a warning message of unused-private-field
> >> >>      COMP: Apply latest version of KWStyle
> >> >>      COMP: Update KWStyle to fix its additional warning messages
> >> >>      COMP: Update KWStyle to fix its additional warning messages
> >> >>      COMP: Fix data-conversion warning messages on Windows
> >> >>      ENH: Update itkResourceProbe to calculate statistical data
> >> >>      COMP: Fix data-conversion warning messages on VS14
> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
> >> >>      ENH: Update the Report() function of
> >> >> itkResourceProbesCollectorBase
> >> >>      COMP: Fix data-conversion warning message on itkResourceProbe
> >> >>      COMP: Fix additional warning messages of KWStyle
> >> >>      COMP: Fix data-conversion warning messages
> >> >>
> >> >> Jon Haitz Legarreta (6):
> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
> >> >>      BUG: Fix compilation issues for
> StatisticsUniqueLabelMapFilterTest
> >> >>      BUG: Fix comparison issues for itkStatisticsUniqueLabelMapFilter
> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
> >> >>      ENH: Improve code coverage for
> >> >> itkParametricSpaceToImageSpaceMeshFilter
> >> >>
> >> >> Julien Michel (1):
> >> >>      ENH: Support of VectorImage as template parameters for
> >> >> WarpImageFilter
> >> >>
> >> >> Junjie Bai (2):
> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
> >> >>      BUG: LabelObject CopyAttribute support different LabelObject
> type
> >> >>
> >> >> KWSys Robot (4):
> >> >>      KWSys 2015-07-10 (c9336bcf)
> >> >>      KWSys 2015-07-30 (f63febb7)
> >> >>      KWSys 2015-08-24 (cdaf522c)
> >> >>      KWSys 2015-08-28 (dc3fdd7f)
> >> >>
> >> >> LIBPNG Upstream (2):
> >> >>      PNG 2009-04-06 (e68f5a36)
> >> >>      PNG 2014-02-05 (3e753eb8)
> >> >>
> >> >> Laurentiu Nicola (2):
> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
> >> >>
> >> >> Luc Hermitte (8):
> >> >>      PERF: itk::Image::GetPixel() performance improvment.
> >> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
> >> >>      BUG: Error in VariableLengthVector Unit Tests
> >> >>      PERF: Performance enhancements on VLV 2/...
> >> >>      PERF: Performances enhancements on VLV 3/...
> >> >>      COMP: Fix signed/unsigned warnings
> >> >>      BUG: std::copy/fill on empty VLV
> >> >>
> >> >> Lucas Gandel (4):
> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
> >> >>      STYLE: Fix KWStyle dashboard errors
> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
> >> >>
> >> >> Mathieu Malaterre (1):
> >> >>      BUG: Name mangle the included expat third party library.
> >> >>
> >> >> Matthew McCormick (94):
> >> >>      ENH: Change itkSystemInformationTest to
> itkCMakeConfigurationTest.
> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
> >> >>      ENH: Bump ITK version to 4.9.0.
> >> >>      BUG: Remove std::cout calls from classes.
> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >> >>      BUG: Implement UpdateLargestPossibleRegion for
> >> >> ImageToVTKImageFilter.
> >> >>      COMP: Add link interface specification for wrapping
> >> >> target_link_libraries.
> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
> >> >>      COMP: Fix MINCTransformIO factory registration.
> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
> >> >>      COMP: Remove unknown doxygen command in AnisotropicDiffusionLBR.
> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
> >> >>      COMP: Disable the gold linker for static builds on Ubuntu 14.04.
> >> >>      ENH: Use Windows binaries for CastXML.
> >> >>      ENH: Add better scoping in igenerator.py.
> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
> >> >>      BUG: LevelSetsv4 used signed char instead of char.
> >> >>      ENH: Add better scoping to idx.py.
> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
> >> >>      STYLE: Use prefix increment operator in ImageBase.
> >> >>      DOC: Correct spelling of Continuous.
> >> >>      ENH: Add more progress information to IterativeClosestPoint2.
> >> >>      BUG: Build BridgeNumPy with Visual Studio.
> >> >>      ENH: Add ITKModuleExternal.cmake
> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
> >> >>      BUG: Use CastXML binary built in Release.
> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
> >> >>      COMP: Set CMP0054 to new.
> >> >>      COMP: Address line length too long for Software Guide.
> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
> >> >>      BUG: Support Python 3 wrapping module initialization.
> >> >>      BUG: Update itkTemplate.py for Python 3.
> >> >>      BUG: Update itkExtras.py for Python 3.
> >> >>      BUG: Prevent Python callback addition recursion.
> >> >>      BUG: Fix test scripts for Python 3.
> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
> >> >>      ENH: Allow projects to build against an external module.
> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
> >> >>      ENH: Rename _cable_ to _wrappers_.
> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
> >> >>      ENH: Bump CastXML version to 2015-30-29.
> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
> >> >>      COMP: Add missing ITKIOImageBase dependency for
> ITKTransformMINC.
> >> >>      COMP: Use itkSimpleNewMacro in
> >> >> ThreadedIteratorRangePartitionerTest.
> >> >>      ENH: Add wrapping support for building modules externally.
> >> >>      BUG: Fix KWStyle test paths when building a module externally.
> >> >>      ENH: Add Cuberille Remote module.
> >> >>      COMP: Remove carriage returns from Cuberille remote.
> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
> >> >>      DOC: Correct spelling of Continuous.
> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
> >> >>      STYLE: Use prefix increment operator in ImageBase.
> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it gets
> >> >> installed."
> >> >>      BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
> >> >>      ENH: Marking wrapping CMake configuration variables as advanced.
> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot have
> >> >> override.
> >> >>      COMP: Add wrapping for AdaptiveHistogramEqualizationImageFilter.
> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
> >> >>      BUG: Improve KWStyle ExternalProject utilization.
> >> >>      ENH: Remove old KWStyle build script.
> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not found.
> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to WRAPPING_SUBMODULE_ORDER.
> >> >>      ENH: Install Python bindings into site-packages.
> >> >>      ENH: Improve readability of Python site-packages path detection.
> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
> >> >> warning.
> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
> >> >>      ENH: Improves names and export of module dependencies.
> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
> >> >>      COMP: Set CMP0054 to new.
> >> >>      BUG: Remove unused wrapping files.
> >> >>      BUG: Do install install wrapping development files.
> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
> >> >>      BUG: Fix detection of the gold linker.
> >> >>      BUG: Update Python package installation locations.
> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
> >> >>      COMP: Link to VTK Python when built with Kits support.
> >> >>      BUG: Install itk_minc2.h header.
> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
> >> >>
> >> >> Michka Popoff (9):
> >> >>      ENH: Update to swig 3.0.7
> >> >>      ENH: Do not link against specific Python library on OS X
> >> >>      COMP: Fix wrapping warnings when building with
> >> >> ITK_WRAP_IMAGE_DIMS=2
> >> >>      COMP: Add missing wrapping for TransformBase
> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
> >> >>      COMP: Disable incompatible modules when using Python 3 wrapping
> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
> >> >> ImageFilterBase
> >> >> module
> >> >>      COMP: Disable incompatible modules when using Python 3 wrapping
> >> >>      ENH: Allow operations on Indexes and Offsets in Python
> >> >>
> >> >> Mikhail Isakov (1):
> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
> image
> >> >>
> >> >> Nick Tustison (5):
> >> >>      BUG:  Set a default b-spline epsilon.
> >> >>      ENH: Adding testing for closed loop.
> >> >>      BUG:  Updating B-spline classes with the same epsilon strategy.
> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
> >> >>      ENH:  Point-set registration with time-varying B-spline.
> >> >>
> >> >> Olivier Commowick (3):
> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen
> >> >> system
> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
> pythag
> >> >> from V3P)
> >> >>      BUG: Switch eigenvalues computation to double
> >> >>
> >> >> Pablo Hernandez-Cerdan (2):
> >> >>      ENH: Help class for itkFlatStructuringElement with constructor
> >> >> from
> >> >> images.
> >> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
> >> >>
> >> >> Seun Odutola (1):
> >> >>      COMP: Fixed name clash with Apple header (check Macro), renamed
> >> >> check
> >> >> to Check
> >> >>
> >> >> Shawn Waldon (1):
> >> >>      COMP: Set target OS X version in environment for tools using
> >> >> compiler
> >> >>
> >> >> Simon Alexander (1):
> >> >>      BUG: incorrect closest point computation
> >> >>
> >> >> Tobias Wood (2):
> >> >>      BUG: LBFGSB was printing messages even with debug switched off.
> >> >>      BUG: Removed an unguarded print statement.
> >> >>
> >> >> Vladimir S. FONOV (9):
> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
> >> >>      COMP: Changing the order of HDF5 library components
> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
> >> >> Transform
> >> >>      STYLE: updated comments to properly reference LIBMINC
> >> >>      ENH: Add script to merge upstream MINC as a subtree
> >> >>      MINC 2015-07-23 (c033d431)
> >> >>      COMP: Update MINC CMake code
> >> >>      MINC 2015-08-18 (6d7e3ba8)
> >> >>      MINC 2015-09-13 (95cd5374)
> >> >>
> >> >> Xiaoxiao Liu (1):
> >> >>      DOC: update email address for xiaoxiao.
> >> >>
> >> >> Zach Williamson (10):
> >> >>      BUG: Use correct libraries for ImageFusion tests
> >> >>      ENH: Consolidate Library Dependencies
> >> >>      COMP: Add a missing link to Review module
> >> >>      COMP: Use correct linking macro in DCMTK
> >> >>      BUG: Use correct libraries for TestKernel tests
> >> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
> >> >>      ENH: Use new linking system macros
> >> >>      PERF: Avoid searching private dependencies for include
> directories
> >> >>      COMP: Recover missing dependencies
> >> >>      ENH: use new linking macros in Filtering module
> >> >>
> >> >>
> >> >>
> >> >> -----------------------------------------------------
> >> >> Errors or omissions? Please fix them here:
> >> >>
> >> >>
> >> >>
> >> >>
> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
> >> >> _____________________________________
> >> >> Powered by www.kitware.com
> >> >>
> >> >> Visit other Kitware open-source projects at
> >> >> http://www.kitware.com/opensource/opensource.html
> >> >>
> >> >> Kitware offers ITK Training Courses, for more information visit:
> >> >> http://www.kitware.com/products/protraining.php
> >> >>
> >> >> Please keep messages on-topic and check the ITK FAQ at:
> >> >> http://www.itk.org/Wiki/ITK_FAQ
> >> >>
> >> >> Follow this link to subscribe/unsubscribe:
> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>
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From mohammedrashadkm at gmail.com  Wed Nov 25 15:37:24 2015
From: mohammedrashadkm at gmail.com (Rashad Kanavath)
Date: Wed, 25 Nov 2015 21:37:24 +0100
Subject: [ITK] [ITK-dev] clang throws a lot of
	-Wunknown-attributes	warning.
In-Reply-To: <CALzTN-SnLVa1dB1voe0fnjCP3p0FzdeBsyBLVe2HTQj0E+PDBw@mail.gmail.com>
References: <CANNqv9dKMUwETQFsVW1kE72J7vfFi=0KAuhdN7T5KX_eXtraew@mail.gmail.com>
 <CALzTN-SnLVa1dB1voe0fnjCP3p0FzdeBsyBLVe2HTQj0E+PDBw@mail.gmail.com>
Message-ID: <CANNqv9fuaxQ5S00BdbO6kNFBMtB8o4S_3idhGP0sfKn3b-5s5g@mail.gmail.com>

On Wed, Nov 25, 2015 at 4:47 PM, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Rashad,
>
> Thanks for discussing issue.
>
> I have been using that compiler and have not come across those warnings.
> Are there any non-default flags or CMake options being used?
>

> Could you please submit an Experimental build to the dashboard? ('ctest -D
> Experimental' from a clean build tree)
>

I don't have access to the machine to do a dashboard submission. I will ask
the person or try a  new submission from my system. I will first check if
there is any warning flag that is messing up.

I will let you know tomorrow or day after.

Thanks,
> Matt
>
> On Tue, Nov 24, 2015 at 10:39 AM, Rashad Kanavath <
> mohammedrashadkm at gmail.com> wrote:
>
>> Hello all,
>>
>> I am getting a lot of warnings when using itk with clang compiler.
>>
>> clang version: 3.5.0
>> Fedora Linux 22 x86_64
>> ITK trunk
>>
>> In file included from
>> /home/otbtesting/sources/orfeo/trunk/OTB-Nightly/Modules/Core/SpatialObjects/include/otbLineSpatialObjectList.h:23:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkLineSpatialObject.h:23:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkPointBasedSpatialObject.h:21:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkSpatialObject.h:23:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkAffineGeometryFrame.h:23:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkScalableAffineTransform.h:21:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkAffineTransform.h:21:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkMatrixOffsetTransformBase.h:24:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkTransform.h:25:
>> In file included from
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkVariableLengthVector.h:1348:
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkVariableLengthVector.hxx:312:3:
>> warning: unknown attribute 'error' ignored [-Wunknown-attributes]
>>   itkStaticAssert(
>>   ^
>> /home/otbtesting/install/itk/trunk/Release/include/ITK-4.9/itkStaticAssert.h:40:35:
>> note: expanded from macro 'itkStaticAssert'
>>       ({extern int __attribute__((error(str))) StaticAssertFailure(); \
>>                                   ^
>> 3 warnings generated.
>>
>> --
>> Regards,
>>    Rashad
>>
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-developers
>>
>> _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>>
>>
>


-- 
Regards,
   Rashad
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_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From dzenanz at gmail.com  Wed Nov 25 15:57:58 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 25 Nov 2015 15:57:58 -0500
Subject: [ITK] [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
Message-ID: <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>

Building git master from Nov 23rd with examples and testing enabled I get
14 compile errors in VS2015 debug x64. Should we coordinate our efforts in
fixing them?

On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com>
wrote:

> Two of the three failures look like truncation issues (like
> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>
> The other (
> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)  is
> less obvious.
>
> If I have time this evening I'll try and have a look at these.
>
> Is your standard test build in 32 bit ?  That might explain the difference
> if there are some underlying type assumptions, but not obvious why 2015
> would trigger but not 2013.
>
>
>
> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>
>> Ah, cool!  Here:
>>
>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>
>> Could you please look into the test failures?
>>
>> @Hyun Jae, could you please look into the KWStyle warnings?
>>
>> Thanks,
>> Matt
>>
>>
>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>> SIMON-LAP,
>> > (actually 3 as I wasn't sure the config was right on the first one).
>> VS2013
>> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
>> > truncation problem on the resuts.
>> >
>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <matt.mccormick at kitware.com
>> >
>> > wrote:
>> >>
>> >> Hi Simon,
>> >>
>> >> Thanks for testing.
>> >>
>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>> >>
>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>> >>
>> >> Are there any different flags? Could you please submit an Experimental
>> >> build?
>> >>
>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
>> -C
>> >> Release
>> >>
>> >> from a fresh build tree.
>> >>
>> >> Thanks,
>> >> Matt
>> >>
>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>> skalexander at gmail.com>
>> >> wrote:
>> >> > Looks like a few problems with x64 build on visual studio 2015 - do
>> you
>> >> > have
>> >> > a test machine in this configuration?
>> >> >
>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>> matt.mccormick at kitware.com>
>> >> > wrote:
>> >> >>
>> >> >> On behalf of the Insight Toolkit community, we are proud to announce
>> >> >> that
>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>> >> >> testing!
>> >> >>
>> >> >> Please take this opportunity to test the new features in the release
>> >> >> candidate.
>> >> >>
>> >> >>
>> >> >> To obtain the source code,
>> >> >>
>> >> >>   git clone http://itk.org/ITK.git
>> >> >>  cd ITK
>> >> >>  git checkout -q --detach v4.9rc01
>> >> >>
>> >> >> For more details, please see the Git documentation [1].
>> >> >>
>> >> >>
>> >> >> A few selected highlights for this release:
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * New Remote modules: the Cuberille module for smooth generation of
>> >> >> meshes
>> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
>> module
>> >> >> improved edge-preserving smoothing.
>> >> >> * Build your own ITK module outside the source tree, add continuous
>> >> >> integration testing on GitHub, and easily add Python wrapping for
>> your
>> >> >> C++
>> >> >> algorithms.
>> >> >> * Python wrapping, including Python 3, builds faster with a more
>> >> >> standard
>> >> >> installation
>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>> >> >> itk::VariableLengthVector?s
>> >> >> * Generate a FlatStructuringElement from an image
>> >> >> * Point-set registration with time-varying B-splines
>> >> >> * Module dependencies can now be specified as public / private /
>> >> >> compile /
>> >> >> test
>> >> >>
>> >> >>
>> >> >> Please test the release candidate and share your experiences on the
>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new module
>> >> >> dependency specification mechanism may unearth missing dependencies
>> for
>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>> command.
>> >> >>
>> >> >>
>> >> >> An Experimental build, which demonstrates how the test suite
>> performs
>> >> >> on
>> >> >> your local build system, can be submitted to the dashboard [2] with:
>> >> >>
>> >> >>   mkdir ../ITK-build
>> >> >>   cd ../ITK-build
>> >> >>   cmake ../ITK
>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>> Submit
>> >> >>
>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>> command.
>> >> >>
>> >> >> Notify the mailing list if there are any unexpected failures.
>> Testing
>> >> >> your own applications against the RC is also appreciated.
>> >> >>
>> >> >>
>> >> >> Congratulations and well done to the 35 contributors to this
>> release.
>> >> >> We
>> >> >> would especially like to recognize the new contributors: Mikhail
>> >> >> Isakov,
>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>> >> >> Odutola,
>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson,
>> >> >> Luc
>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>> >> >>
>> >> >>
>> >> >> The final release is scheduled for mid-December.
>> >> >>
>> >> >>
>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>> >> >>
>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>> >> >>
>> >> >>
>> >> >>
>> >> >> New Features
>> >> >> ---------------------
>> >> >>
>> >> >> Wrapping improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Python 3 supported
>> >> >> * Wrapping builds much faster due to CastXML binaries
>> >> >> * LandmarkBasedTransformInitializer now wrapped
>> >> >> * NumPy bridge with VisualStudio
>> >> >> * Wrapping for the MinimalPathExtraction module
>> >> >> * Wrapping is now installed into Python?s site-packages directory in
>> >> >> the
>> >> >> ?itk? package
>> >> >> * Wrapping package size is decreased
>> >> >> * Better package portability on Mac OSX
>> >> >>
>> >> >>
>> >> >> New Remote Modules
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Cuberille
>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>> >> >> * AnisotropicDiffusionLBR
>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>> >> >>    * Web browser reproducibility:
>> >> >> http://www.kitware.com/blog/home/post/942
>> >> >>
>> >> >>
>> >> >> Core Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * External Modules can now be developed outside of the ITK source
>> tree
>> >> >> and
>> >> >> on GitHub
>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>> >> >> * New utilities in itk::Math:
>> >> >>    * AlmostEquals
>> >> >>    * NotAlmostEquals
>> >> >>    * ExactlyEquals
>> >> >>    * NotExactlyEquals
>> >> >> * New itk::NumericTraits
>> >> >>    * IsInteger
>> >> >>    * IsSigned
>> >> >> * Improved C++11 support
>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>> >> >> * Improved capabilities of itk::ResourceProbe and
>> >> >> itk::ResourceProbesCollectorBase
>> >> >> * Improve numerical stability in VNL eigen system estimation
>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>> >> >>
>> >> >>
>> >> >> Filtering Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Generate a FlatStructuringElement from an image
>> >> >> * WarpImageFilter support VectorImage?s
>> >> >> * ConvertLabelMap supports different LabelMap types
>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>> >> >> module
>> >> >>
>> >> >>
>> >> >> Registration Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Point-set registration with time-varying B-splines
>> >> >>
>> >> >>
>> >> >> Build Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Module dependencies can now be specified as public / private /
>> >> >> compile /
>> >> >> test
>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>> >> >> * Option to export all library symbols on Windows:
>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>> >> >> * Expat third party library is now name mangled
>> >> >> * Many more modules can be built as shared libraries
>> >> >> * KWStyle is automatically built and configured when tests are built
>> >> >>
>> >> >>
>> >> >> Performance Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
>> >> >> metaprogramming
>> >> >>    * itk::mpl::{TrueType,FalseType}
>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>> >> >>    * itk::mpl::EnableIf
>> >> >>    * itk::mpl::IsBaseOf
>> >> >>    * itk::mpl::IsConvertible
>> >> >>    * itk::mpl::IsNumber
>> >> >>    * itk::mpl::IsSame
>> >> >>    * itk::mpl::PromoteType
>> >> >> * Image::GetPixel performance improvements
>> >> >> * Many itk::VariableLengthVector performance improvements
>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>> >> >> * WarpImageFilter performance improvements
>> >> >>
>> >> >>
>> >> >> Documentation Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>> >> >> * ITK Software Guide improvements
>> >> >>    * How to use Python wrapping
>> >> >>    * How to create an ITK module
>> >> >>    * Improvements to segmentation examples
>> >> >>    * Expanded Canny edge detection example
>> >> >>    * Expanded tree container example
>> >> >>
>> >> >>
>> >> >> Third Party Library Updates
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * FFTW updated to latest upstream
>> >> >> * Build with recent OpenCV 2 and 3
>> >> >> * Build with the latest VTK
>> >> >> * PNG update to the latest upstream
>> >> >> * GDCM updated to the latest upstream
>> >> >> * KWSys updated to the latest upstream
>> >> >> * MINC updated to the latest upstream
>> >> >> * SWIG updated to the latest upstream
>> >> >> * Third party PNG and MINC are now Git subtrees
>> >> >>
>> >> >>
>> >> >> Style improvements -- ITK gets more stylish with every release!
>> >> >>
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>> >> >>
>> >> >>
>> >> >> Improved code coverage -- we are at 84.9%!
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >>
>> >> >> * *Lots* of important bug fixes
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >>
>> >> >> * And much more! See details in the log below.
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >>
>> >> >>
>> >> >> Changes from v4.8.0..v4.9rc01
>> >> >> --------------------------------------------
>> >> >>
>> >> >>
>> >> >> Abhishek Tiwari (1):
>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>> >> >>
>> >> >> Adam Snyder (1):
>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>> >> >>
>> >> >> Alexander Leinoff (6):
>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>> >> >> itkMath.h
>> >> >>      COMP: Removes floating-point equality checks
>> >> >>      ENH: COMP: Adds support for complex values to
>> Math::AlmostEquals
>> >> >>      ENH: Updates fftw dependency
>> >> >>
>> >> >> Arnaud Gelas (5):
>> >> >>      COMP: fix warning (unused local typedef)
>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>> >> >>      DOC: add doxgen documentation for
>> >> >> BinaryImageToLevelSetImageAdaptor
>> >> >>      ENH: add tests to exercise
>> itk::ThreadedIteratorRangePartitioner
>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>> >> >>
>> >> >> Betsy McPhail (1):
>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>> >> >>
>> >> >> Bill Hoffman (2):
>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>> >> >> installed.
>> >> >>
>> >> >> Bill Lorensen (4):
>> >> >>      COMP: VTkGlue linker errors
>> >> >>      BUG: Inappropriate use of AlmostEquals
>> >> >>      ENH: Bump tag for wiki examples
>> >> >>      ENH: Better layout strategy
>> >> >>
>> >> >> Brad King (3):
>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>> project
>> >> >>
>> >> >> Bradley Lowekamp (31):
>> >> >>      BUG: Avoid null deference in PrintSelf with default
>> construction
>> >> >>      ENH: Enable base classes for templates of landmark initializer
>> >> >>      STYLE: Use "Swap" for ITK member name
>> >> >>      BUG: Demonstrate Eigen analysis failure
>> >> >>      BUG: Fix computation of Eigen analysis
>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>> >> >>      ENH: Adding initial update script from used libpng version.
>> >> >>      ENH: removing non-subtree files for itkpng
>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>> >> >>      ENH: Update libpng update script for v1.6.9
>> >> >>      BUG: Use ParameterValueType for computation of landmark affine
>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>> >> >>      ENH: Update itkpng name mangling
>> >> >>      BUG: Use const pointer in Set method for constant
>> ReferenceImage
>> >> >> ivar
>> >> >>      BUG: Increase tolerance for
>> PhysicsBasedNonRigidRegistrationMethod
>> >> >>      BUG: Demonstrate side effect on registration due to
>> BSplineScatter
>> >> >> change
>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>> >> >> ImageFilterBase
>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >> >>      BUG: Avoid null deference in PrintSelf with default
>> construction
>> >> >>      BUG: Use const pointer in Set method for constant
>> ReferenceImage
>> >> >> ivar
>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>> MovingHistogram
>> >> >> base
>> >> >>      COMP: address sign unsigned comparison warning
>> >> >>      COMP: Address signed unsigned comparison warning
>> >> >>      COMP: Address unused member variable and methods in anonymous
>> ns
>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>> >> >> range
>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>> >> >>      BUG: Reduce number of targets with MSVC
>> >> >>
>> >> >> Davis Vigneault (7):
>> >> >>      DOC: Minor improvements to segmentation examples.
>> >> >>      DOC: Expanded Canny Edge Detection Example
>> >> >>      DOC: Expanded TreeContainer Example
>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >> >>      COMP: Update Git Tag for Subdivision Module
>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >> >>
>> >> >> D?enan Zuki? (1):
>> >> >>      STYLE: better formatting of the "usage" message
>> >> >>
>> >> >> Eugene Prilepin (1):
>> >> >>      BUG: Fix a template name formation in python wrappings
>> >> >>
>> >> >> Floris Berendsen (1):
>> >> >>      STYLE: Improve naming conventions in comments.
>> >> >>
>> >> >> Hans Johnson (29):
>> >> >>      STYLE: Instrument for FixedParameters typedef
>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>> >> >>      BUG: FixedParameters should be double precision
>> >> >>      STYLE: Minor code style issues for MGHIO
>> >> >>      COMP: Update to version for WikiExamples
>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>> >> >>      ENH: Update MGHIO to be shared lib
>> >> >>      ENH: Provide consistent floating point comparisons
>> >> >>      BUG: Fix MGHIO to fix write failures
>> >> >>      PERF: Remove floating point as sentinal value
>> >> >>      COMP: Const correctness needs to be maintained
>> >> >>      BUG: Preserve backwards compatibility
>> >> >>      DOC: Provide consistent naming in comments
>> >> >>      ENH: Conversion between transform type tolerance
>> >> >>      STYLE: Prefer initialization to assignment
>> >> >>      ENH: Missing ITK_OVERRIDE
>> >> >>      COMP: Need to propagate ITKGDCM
>> >> >>      COMP: Need to propagate ITKGDCM
>> >> >>      COMP: Add missing ITK_OVERRIDE
>> >> >>      STYLE: Minor code style issues for MGHIO
>> >> >>      COMP: Update to version for WikiExamples
>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>> >> >>      ENH: Update MGHIO to be shared lib
>> >> >>      BUG: Fix MGHIO to fix write failures
>> >> >>      ENH: C++11 allows for rigorous =delete
>> >> >>      COMP: Remove unnecessary failing assert test
>> >> >>      ENH: Ignore internal files for the Clion editor
>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>> >> >>      BUG: In configuration test need to mirror code
>> >> >>
>> >> >> Hyun Jae Kang (27):
>> >> >>      BUG: Remove std::cout calls from class
>> >> >>      BUG: Avoid an unexpected output of static_cast
>> >> >>      BUG: Update python example codes for ImageRegistration
>> >> >>      BUG: Retrieve the missed wrap file
>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>> file
>> >> >> header.
>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>> >> >> libraries
>> >> >>      BUG: Fixed older XCode linking error
>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>> >> >>      BUG: Remove std::cout calls from class
>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>> file
>> >> >> header.
>> >> >>      BUG: Fixed older XCode linking error
>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>> >> >>      COMP: KWStyle shadow, format-nonliteral and autological-compare
>> >> >> warning.
>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>> >> >>      COMP: Fixed a warning message of unused-private-field
>> >> >>      COMP: Apply latest version of KWStyle
>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>> >> >>      COMP: Fix data-conversion warning messages on Windows
>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>> >> >>      COMP: Fix data-conversion warning messages on VS14
>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
>> >> >>      ENH: Update the Report() function of
>> >> >> itkResourceProbesCollectorBase
>> >> >>      COMP: Fix data-conversion warning message on itkResourceProbe
>> >> >>      COMP: Fix additional warning messages of KWStyle
>> >> >>      COMP: Fix data-conversion warning messages
>> >> >>
>> >> >> Jon Haitz Legarreta (6):
>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>> >> >>      BUG: Fix compilation issues for
>> StatisticsUniqueLabelMapFilterTest
>> >> >>      BUG: Fix comparison issues for
>> itkStatisticsUniqueLabelMapFilter
>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>> >> >>      ENH: Improve code coverage for
>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>> >> >>
>> >> >> Julien Michel (1):
>> >> >>      ENH: Support of VectorImage as template parameters for
>> >> >> WarpImageFilter
>> >> >>
>> >> >> Junjie Bai (2):
>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>> >> >>      BUG: LabelObject CopyAttribute support different LabelObject
>> type
>> >> >>
>> >> >> KWSys Robot (4):
>> >> >>      KWSys 2015-07-10 (c9336bcf)
>> >> >>      KWSys 2015-07-30 (f63febb7)
>> >> >>      KWSys 2015-08-24 (cdaf522c)
>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>> >> >>
>> >> >> LIBPNG Upstream (2):
>> >> >>      PNG 2009-04-06 (e68f5a36)
>> >> >>      PNG 2014-02-05 (3e753eb8)
>> >> >>
>> >> >> Laurentiu Nicola (2):
>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>> >> >>
>> >> >> Luc Hermitte (8):
>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>> >> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>> >> >>      PERF: Performance enhancements on VLV 2/...
>> >> >>      PERF: Performances enhancements on VLV 3/...
>> >> >>      COMP: Fix signed/unsigned warnings
>> >> >>      BUG: std::copy/fill on empty VLV
>> >> >>
>> >> >> Lucas Gandel (4):
>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
>> >> >>      STYLE: Fix KWStyle dashboard errors
>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>> >> >>
>> >> >> Mathieu Malaterre (1):
>> >> >>      BUG: Name mangle the included expat third party library.
>> >> >>
>> >> >> Matthew McCormick (94):
>> >> >>      ENH: Change itkSystemInformationTest to
>> itkCMakeConfigurationTest.
>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>> >> >>      ENH: Bump ITK version to 4.9.0.
>> >> >>      BUG: Remove std::cout calls from classes.
>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>> >> >> ImageToVTKImageFilter.
>> >> >>      COMP: Add link interface specification for wrapping
>> >> >> target_link_libraries.
>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>> >> >>      COMP: Fix MINCTransformIO factory registration.
>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>> >> >>      COMP: Remove unknown doxygen command in
>> AnisotropicDiffusionLBR.
>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>> 14.04.
>> >> >>      ENH: Use Windows binaries for CastXML.
>> >> >>      ENH: Add better scoping in igenerator.py.
>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>> >> >>      ENH: Add better scoping to idx.py.
>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>> >> >>      DOC: Correct spelling of Continuous.
>> >> >>      ENH: Add more progress information to IterativeClosestPoint2.
>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>> >> >>      ENH: Add ITKModuleExternal.cmake
>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>> >> >>      BUG: Use CastXML binary built in Release.
>> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>> >> >>      COMP: Set CMP0054 to new.
>> >> >>      COMP: Address line length too long for Software Guide.
>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>> >> >>      BUG: Support Python 3 wrapping module initialization.
>> >> >>      BUG: Update itkTemplate.py for Python 3.
>> >> >>      BUG: Update itkExtras.py for Python 3.
>> >> >>      BUG: Prevent Python callback addition recursion.
>> >> >>      BUG: Fix test scripts for Python 3.
>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>> >> >>      ENH: Allow projects to build against an external module.
>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>> >> >>      ENH: Rename _cable_ to _wrappers_.
>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>> ITKTransformMINC.
>> >> >>      COMP: Use itkSimpleNewMacro in
>> >> >> ThreadedIteratorRangePartitionerTest.
>> >> >>      ENH: Add wrapping support for building modules externally.
>> >> >>      BUG: Fix KWStyle test paths when building a module externally.
>> >> >>      ENH: Add Cuberille Remote module.
>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >> >>      DOC: Correct spelling of Continuous.
>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it
>> gets
>> >> >> installed."
>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
>> >> >>      ENH: Marking wrapping CMake configuration variables as
>> advanced.
>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot
>> have
>> >> >> override.
>> >> >>      COMP: Add wrapping for
>> AdaptiveHistogramEqualizationImageFilter.
>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>> >> >>      ENH: Remove old KWStyle build script.
>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>> found.
>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>> WRAPPING_SUBMODULE_ORDER.
>> >> >>      ENH: Install Python bindings into site-packages.
>> >> >>      ENH: Improve readability of Python site-packages path
>> detection.
>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
>> >> >> warning.
>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>> >> >>      ENH: Improves names and export of module dependencies.
>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>> >> >>      COMP: Set CMP0054 to new.
>> >> >>      BUG: Remove unused wrapping files.
>> >> >>      BUG: Do install install wrapping development files.
>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>> >> >>      BUG: Fix detection of the gold linker.
>> >> >>      BUG: Update Python package installation locations.
>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>> >> >>      COMP: Link to VTK Python when built with Kits support.
>> >> >>      BUG: Install itk_minc2.h header.
>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>> >> >>
>> >> >> Michka Popoff (9):
>> >> >>      ENH: Update to swig 3.0.7
>> >> >>      ENH: Do not link against specific Python library on OS X
>> >> >>      COMP: Fix wrapping warnings when building with
>> >> >> ITK_WRAP_IMAGE_DIMS=2
>> >> >>      COMP: Add missing wrapping for TransformBase
>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>> >> >> ImageFilterBase
>> >> >> module
>> >> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>> >> >>
>> >> >> Mikhail Isakov (1):
>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
>> image
>> >> >>
>> >> >> Nick Tustison (5):
>> >> >>      BUG:  Set a default b-spline epsilon.
>> >> >>      ENH: Adding testing for closed loop.
>> >> >>      BUG:  Updating B-spline classes with the same epsilon strategy.
>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>> >> >>
>> >> >> Olivier Commowick (3):
>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen
>> >> >> system
>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>> pythag
>> >> >> from V3P)
>> >> >>      BUG: Switch eigenvalues computation to double
>> >> >>
>> >> >> Pablo Hernandez-Cerdan (2):
>> >> >>      ENH: Help class for itkFlatStructuringElement with constructor
>> >> >> from
>> >> >> images.
>> >> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
>> >> >>
>> >> >> Seun Odutola (1):
>> >> >>      COMP: Fixed name clash with Apple header (check Macro), renamed
>> >> >> check
>> >> >> to Check
>> >> >>
>> >> >> Shawn Waldon (1):
>> >> >>      COMP: Set target OS X version in environment for tools using
>> >> >> compiler
>> >> >>
>> >> >> Simon Alexander (1):
>> >> >>      BUG: incorrect closest point computation
>> >> >>
>> >> >> Tobias Wood (2):
>> >> >>      BUG: LBFGSB was printing messages even with debug switched off.
>> >> >>      BUG: Removed an unguarded print statement.
>> >> >>
>> >> >> Vladimir S. FONOV (9):
>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>> >> >>      COMP: Changing the order of HDF5 library components
>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>> >> >> Transform
>> >> >>      STYLE: updated comments to properly reference LIBMINC
>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>> >> >>      MINC 2015-07-23 (c033d431)
>> >> >>      COMP: Update MINC CMake code
>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>> >> >>      MINC 2015-09-13 (95cd5374)
>> >> >>
>> >> >> Xiaoxiao Liu (1):
>> >> >>      DOC: update email address for xiaoxiao.
>> >> >>
>> >> >> Zach Williamson (10):
>> >> >>      BUG: Use correct libraries for ImageFusion tests
>> >> >>      ENH: Consolidate Library Dependencies
>> >> >>      COMP: Add a missing link to Review module
>> >> >>      COMP: Use correct linking macro in DCMTK
>> >> >>      BUG: Use correct libraries for TestKernel tests
>> >> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>> >> >>      ENH: Use new linking system macros
>> >> >>      PERF: Avoid searching private dependencies for include
>> directories
>> >> >>      COMP: Recover missing dependencies
>> >> >>      ENH: use new linking macros in Filtering module
>> >> >>
>> >> >>
>> >> >>
>> >> >> -----------------------------------------------------
>> >> >> Errors or omissions? Please fix them here:
>> >> >>
>> >> >>
>> >> >>
>> >> >>
>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>> >> >> _____________________________________
>> >> >> Powered by www.kitware.com
>> >> >>
>> >> >> Visit other Kitware open-source projects at
>> >> >> http://www.kitware.com/opensource/opensource.html
>> >> >>
>> >> >> Kitware offers ITK Training Courses, for more information visit:
>> >> >> http://www.kitware.com/products/protraining.php
>> >> >>
>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>> >> >>
>> >> >> Follow this link to subscribe/unsubscribe:
>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
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>
> Kitware offers ITK Training Courses, for more information visit:
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>
> Please keep messages on-topic and check the ITK FAQ at:
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From dzenanz at gmail.com  Wed Nov 25 15:57:58 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 25 Nov 2015 15:57:58 -0500
Subject: [ITK] [ITK-users] [ITK-dev] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
Message-ID: <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>

Building git master from Nov 23rd with examples and testing enabled I get
14 compile errors in VS2015 debug x64. Should we coordinate our efforts in
fixing them?

On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com>
wrote:

> Two of the three failures look like truncation issues (like
> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>
> The other (
> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)  is
> less obvious.
>
> If I have time this evening I'll try and have a look at these.
>
> Is your standard test build in 32 bit ?  That might explain the difference
> if there are some underlying type assumptions, but not obvious why 2015
> would trigger but not 2013.
>
>
>
> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>
>> Ah, cool!  Here:
>>
>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>
>> Could you please look into the test failures?
>>
>> @Hyun Jae, could you please look into the KWStyle warnings?
>>
>> Thanks,
>> Matt
>>
>>
>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>> SIMON-LAP,
>> > (actually 3 as I wasn't sure the config was right on the first one).
>> VS2013
>> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
>> > truncation problem on the resuts.
>> >
>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <matt.mccormick at kitware.com
>> >
>> > wrote:
>> >>
>> >> Hi Simon,
>> >>
>> >> Thanks for testing.
>> >>
>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>> >>
>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>> >>
>> >> Are there any different flags? Could you please submit an Experimental
>> >> build?
>> >>
>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
>> -C
>> >> Release
>> >>
>> >> from a fresh build tree.
>> >>
>> >> Thanks,
>> >> Matt
>> >>
>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>> skalexander at gmail.com>
>> >> wrote:
>> >> > Looks like a few problems with x64 build on visual studio 2015 - do
>> you
>> >> > have
>> >> > a test machine in this configuration?
>> >> >
>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>> matt.mccormick at kitware.com>
>> >> > wrote:
>> >> >>
>> >> >> On behalf of the Insight Toolkit community, we are proud to announce
>> >> >> that
>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>> >> >> testing!
>> >> >>
>> >> >> Please take this opportunity to test the new features in the release
>> >> >> candidate.
>> >> >>
>> >> >>
>> >> >> To obtain the source code,
>> >> >>
>> >> >>   git clone http://itk.org/ITK.git
>> >> >>  cd ITK
>> >> >>  git checkout -q --detach v4.9rc01
>> >> >>
>> >> >> For more details, please see the Git documentation [1].
>> >> >>
>> >> >>
>> >> >> A few selected highlights for this release:
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * New Remote modules: the Cuberille module for smooth generation of
>> >> >> meshes
>> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
>> module
>> >> >> improved edge-preserving smoothing.
>> >> >> * Build your own ITK module outside the source tree, add continuous
>> >> >> integration testing on GitHub, and easily add Python wrapping for
>> your
>> >> >> C++
>> >> >> algorithms.
>> >> >> * Python wrapping, including Python 3, builds faster with a more
>> >> >> standard
>> >> >> installation
>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>> >> >> itk::VariableLengthVector?s
>> >> >> * Generate a FlatStructuringElement from an image
>> >> >> * Point-set registration with time-varying B-splines
>> >> >> * Module dependencies can now be specified as public / private /
>> >> >> compile /
>> >> >> test
>> >> >>
>> >> >>
>> >> >> Please test the release candidate and share your experiences on the
>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new module
>> >> >> dependency specification mechanism may unearth missing dependencies
>> for
>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>> command.
>> >> >>
>> >> >>
>> >> >> An Experimental build, which demonstrates how the test suite
>> performs
>> >> >> on
>> >> >> your local build system, can be submitted to the dashboard [2] with:
>> >> >>
>> >> >>   mkdir ../ITK-build
>> >> >>   cd ../ITK-build
>> >> >>   cmake ../ITK
>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>> Submit
>> >> >>
>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>> command.
>> >> >>
>> >> >> Notify the mailing list if there are any unexpected failures.
>> Testing
>> >> >> your own applications against the RC is also appreciated.
>> >> >>
>> >> >>
>> >> >> Congratulations and well done to the 35 contributors to this
>> release.
>> >> >> We
>> >> >> would especially like to recognize the new contributors: Mikhail
>> >> >> Isakov,
>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>> >> >> Odutola,
>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach Williamson,
>> >> >> Luc
>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>> >> >>
>> >> >>
>> >> >> The final release is scheduled for mid-December.
>> >> >>
>> >> >>
>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>> >> >>
>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>> >> >>
>> >> >>
>> >> >>
>> >> >> New Features
>> >> >> ---------------------
>> >> >>
>> >> >> Wrapping improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Python 3 supported
>> >> >> * Wrapping builds much faster due to CastXML binaries
>> >> >> * LandmarkBasedTransformInitializer now wrapped
>> >> >> * NumPy bridge with VisualStudio
>> >> >> * Wrapping for the MinimalPathExtraction module
>> >> >> * Wrapping is now installed into Python?s site-packages directory in
>> >> >> the
>> >> >> ?itk? package
>> >> >> * Wrapping package size is decreased
>> >> >> * Better package portability on Mac OSX
>> >> >>
>> >> >>
>> >> >> New Remote Modules
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Cuberille
>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>> >> >> * AnisotropicDiffusionLBR
>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>> >> >>    * Web browser reproducibility:
>> >> >> http://www.kitware.com/blog/home/post/942
>> >> >>
>> >> >>
>> >> >> Core Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * External Modules can now be developed outside of the ITK source
>> tree
>> >> >> and
>> >> >> on GitHub
>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>> >> >> * New utilities in itk::Math:
>> >> >>    * AlmostEquals
>> >> >>    * NotAlmostEquals
>> >> >>    * ExactlyEquals
>> >> >>    * NotExactlyEquals
>> >> >> * New itk::NumericTraits
>> >> >>    * IsInteger
>> >> >>    * IsSigned
>> >> >> * Improved C++11 support
>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>> >> >> * Improved capabilities of itk::ResourceProbe and
>> >> >> itk::ResourceProbesCollectorBase
>> >> >> * Improve numerical stability in VNL eigen system estimation
>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>> >> >>
>> >> >>
>> >> >> Filtering Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Generate a FlatStructuringElement from an image
>> >> >> * WarpImageFilter support VectorImage?s
>> >> >> * ConvertLabelMap supports different LabelMap types
>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>> >> >> module
>> >> >>
>> >> >>
>> >> >> Registration Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Point-set registration with time-varying B-splines
>> >> >>
>> >> >>
>> >> >> Build Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Module dependencies can now be specified as public / private /
>> >> >> compile /
>> >> >> test
>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>> >> >> * Option to export all library symbols on Windows:
>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>> >> >> * Expat third party library is now name mangled
>> >> >> * Many more modules can be built as shared libraries
>> >> >> * KWStyle is automatically built and configured when tests are built
>> >> >>
>> >> >>
>> >> >> Performance Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
>> >> >> metaprogramming
>> >> >>    * itk::mpl::{TrueType,FalseType}
>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>> >> >>    * itk::mpl::EnableIf
>> >> >>    * itk::mpl::IsBaseOf
>> >> >>    * itk::mpl::IsConvertible
>> >> >>    * itk::mpl::IsNumber
>> >> >>    * itk::mpl::IsSame
>> >> >>    * itk::mpl::PromoteType
>> >> >> * Image::GetPixel performance improvements
>> >> >> * Many itk::VariableLengthVector performance improvements
>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>> >> >> * WarpImageFilter performance improvements
>> >> >>
>> >> >>
>> >> >> Documentation Improvements
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>> >> >> * ITK Software Guide improvements
>> >> >>    * How to use Python wrapping
>> >> >>    * How to create an ITK module
>> >> >>    * Improvements to segmentation examples
>> >> >>    * Expanded Canny edge detection example
>> >> >>    * Expanded tree container example
>> >> >>
>> >> >>
>> >> >> Third Party Library Updates
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * FFTW updated to latest upstream
>> >> >> * Build with recent OpenCV 2 and 3
>> >> >> * Build with the latest VTK
>> >> >> * PNG update to the latest upstream
>> >> >> * GDCM updated to the latest upstream
>> >> >> * KWSys updated to the latest upstream
>> >> >> * MINC updated to the latest upstream
>> >> >> * SWIG updated to the latest upstream
>> >> >> * Third party PNG and MINC are now Git subtrees
>> >> >>
>> >> >>
>> >> >> Style improvements -- ITK gets more stylish with every release!
>> >> >>
>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>> >> >>
>> >> >>
>> >> >> Improved code coverage -- we are at 84.9%!
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >>
>> >> >> * *Lots* of important bug fixes
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >>
>> >> >> * And much more! See details in the log below.
>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>> >> >>
>> >> >>
>> >> >>
>> >> >> Changes from v4.8.0..v4.9rc01
>> >> >> --------------------------------------------
>> >> >>
>> >> >>
>> >> >> Abhishek Tiwari (1):
>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>> >> >>
>> >> >> Adam Snyder (1):
>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>> >> >>
>> >> >> Alexander Leinoff (6):
>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>> >> >> itkMath.h
>> >> >>      COMP: Removes floating-point equality checks
>> >> >>      ENH: COMP: Adds support for complex values to
>> Math::AlmostEquals
>> >> >>      ENH: Updates fftw dependency
>> >> >>
>> >> >> Arnaud Gelas (5):
>> >> >>      COMP: fix warning (unused local typedef)
>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>> >> >>      DOC: add doxgen documentation for
>> >> >> BinaryImageToLevelSetImageAdaptor
>> >> >>      ENH: add tests to exercise
>> itk::ThreadedIteratorRangePartitioner
>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>> >> >>
>> >> >> Betsy McPhail (1):
>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>> >> >>
>> >> >> Bill Hoffman (2):
>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>> >> >> installed.
>> >> >>
>> >> >> Bill Lorensen (4):
>> >> >>      COMP: VTkGlue linker errors
>> >> >>      BUG: Inappropriate use of AlmostEquals
>> >> >>      ENH: Bump tag for wiki examples
>> >> >>      ENH: Better layout strategy
>> >> >>
>> >> >> Brad King (3):
>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>> project
>> >> >>
>> >> >> Bradley Lowekamp (31):
>> >> >>      BUG: Avoid null deference in PrintSelf with default
>> construction
>> >> >>      ENH: Enable base classes for templates of landmark initializer
>> >> >>      STYLE: Use "Swap" for ITK member name
>> >> >>      BUG: Demonstrate Eigen analysis failure
>> >> >>      BUG: Fix computation of Eigen analysis
>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>> >> >>      ENH: Adding initial update script from used libpng version.
>> >> >>      ENH: removing non-subtree files for itkpng
>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>> >> >>      ENH: Update libpng update script for v1.6.9
>> >> >>      BUG: Use ParameterValueType for computation of landmark affine
>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>> >> >>      ENH: Update itkpng name mangling
>> >> >>      BUG: Use const pointer in Set method for constant
>> ReferenceImage
>> >> >> ivar
>> >> >>      BUG: Increase tolerance for
>> PhysicsBasedNonRigidRegistrationMethod
>> >> >>      BUG: Demonstrate side effect on registration due to
>> BSplineScatter
>> >> >> change
>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>> >> >> ImageFilterBase
>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>> >> >>      BUG: Avoid null deference in PrintSelf with default
>> construction
>> >> >>      BUG: Use const pointer in Set method for constant
>> ReferenceImage
>> >> >> ivar
>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>> MovingHistogram
>> >> >> base
>> >> >>      COMP: address sign unsigned comparison warning
>> >> >>      COMP: Address signed unsigned comparison warning
>> >> >>      COMP: Address unused member variable and methods in anonymous
>> ns
>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>> >> >> range
>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>> >> >>      BUG: Reduce number of targets with MSVC
>> >> >>
>> >> >> Davis Vigneault (7):
>> >> >>      DOC: Minor improvements to segmentation examples.
>> >> >>      DOC: Expanded Canny Edge Detection Example
>> >> >>      DOC: Expanded TreeContainer Example
>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >> >>      COMP: Update Git Tag for Subdivision Module
>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>> >> >>
>> >> >> D?enan Zuki? (1):
>> >> >>      STYLE: better formatting of the "usage" message
>> >> >>
>> >> >> Eugene Prilepin (1):
>> >> >>      BUG: Fix a template name formation in python wrappings
>> >> >>
>> >> >> Floris Berendsen (1):
>> >> >>      STYLE: Improve naming conventions in comments.
>> >> >>
>> >> >> Hans Johnson (29):
>> >> >>      STYLE: Instrument for FixedParameters typedef
>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>> >> >>      BUG: FixedParameters should be double precision
>> >> >>      STYLE: Minor code style issues for MGHIO
>> >> >>      COMP: Update to version for WikiExamples
>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>> >> >>      ENH: Update MGHIO to be shared lib
>> >> >>      ENH: Provide consistent floating point comparisons
>> >> >>      BUG: Fix MGHIO to fix write failures
>> >> >>      PERF: Remove floating point as sentinal value
>> >> >>      COMP: Const correctness needs to be maintained
>> >> >>      BUG: Preserve backwards compatibility
>> >> >>      DOC: Provide consistent naming in comments
>> >> >>      ENH: Conversion between transform type tolerance
>> >> >>      STYLE: Prefer initialization to assignment
>> >> >>      ENH: Missing ITK_OVERRIDE
>> >> >>      COMP: Need to propagate ITKGDCM
>> >> >>      COMP: Need to propagate ITKGDCM
>> >> >>      COMP: Add missing ITK_OVERRIDE
>> >> >>      STYLE: Minor code style issues for MGHIO
>> >> >>      COMP: Update to version for WikiExamples
>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>> >> >>      ENH: Update MGHIO to be shared lib
>> >> >>      BUG: Fix MGHIO to fix write failures
>> >> >>      ENH: C++11 allows for rigorous =delete
>> >> >>      COMP: Remove unnecessary failing assert test
>> >> >>      ENH: Ignore internal files for the Clion editor
>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>> >> >>      BUG: In configuration test need to mirror code
>> >> >>
>> >> >> Hyun Jae Kang (27):
>> >> >>      BUG: Remove std::cout calls from class
>> >> >>      BUG: Avoid an unexpected output of static_cast
>> >> >>      BUG: Update python example codes for ImageRegistration
>> >> >>      BUG: Retrieve the missed wrap file
>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>> file
>> >> >> header.
>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>> >> >> libraries
>> >> >>      BUG: Fixed older XCode linking error
>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>> >> >>      BUG: Remove std::cout calls from class
>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>> file
>> >> >> header.
>> >> >>      BUG: Fixed older XCode linking error
>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>> >> >>      COMP: KWStyle shadow, format-nonliteral and autological-compare
>> >> >> warning.
>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>> >> >>      COMP: Fixed a warning message of unused-private-field
>> >> >>      COMP: Apply latest version of KWStyle
>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>> >> >>      COMP: Fix data-conversion warning messages on Windows
>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>> >> >>      COMP: Fix data-conversion warning messages on VS14
>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded function
>> >> >>      ENH: Update the Report() function of
>> >> >> itkResourceProbesCollectorBase
>> >> >>      COMP: Fix data-conversion warning message on itkResourceProbe
>> >> >>      COMP: Fix additional warning messages of KWStyle
>> >> >>      COMP: Fix data-conversion warning messages
>> >> >>
>> >> >> Jon Haitz Legarreta (6):
>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>> >> >>      BUG: Fix compilation issues for
>> StatisticsUniqueLabelMapFilterTest
>> >> >>      BUG: Fix comparison issues for
>> itkStatisticsUniqueLabelMapFilter
>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>> >> >>      ENH: Improve code coverage for
>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>> >> >>
>> >> >> Julien Michel (1):
>> >> >>      ENH: Support of VectorImage as template parameters for
>> >> >> WarpImageFilter
>> >> >>
>> >> >> Junjie Bai (2):
>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>> >> >>      BUG: LabelObject CopyAttribute support different LabelObject
>> type
>> >> >>
>> >> >> KWSys Robot (4):
>> >> >>      KWSys 2015-07-10 (c9336bcf)
>> >> >>      KWSys 2015-07-30 (f63febb7)
>> >> >>      KWSys 2015-08-24 (cdaf522c)
>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>> >> >>
>> >> >> LIBPNG Upstream (2):
>> >> >>      PNG 2009-04-06 (e68f5a36)
>> >> >>      PNG 2014-02-05 (3e753eb8)
>> >> >>
>> >> >> Laurentiu Nicola (2):
>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>> >> >>
>> >> >> Luc Hermitte (8):
>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>> >> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>> >> >>      PERF: Performance enhancements on VLV 2/...
>> >> >>      PERF: Performances enhancements on VLV 3/...
>> >> >>      COMP: Fix signed/unsigned warnings
>> >> >>      BUG: std::copy/fill on empty VLV
>> >> >>
>> >> >> Lucas Gandel (4):
>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
>> >> >>      STYLE: Fix KWStyle dashboard errors
>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>> >> >>
>> >> >> Mathieu Malaterre (1):
>> >> >>      BUG: Name mangle the included expat third party library.
>> >> >>
>> >> >> Matthew McCormick (94):
>> >> >>      ENH: Change itkSystemInformationTest to
>> itkCMakeConfigurationTest.
>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>> >> >>      ENH: Bump ITK version to 4.9.0.
>> >> >>      BUG: Remove std::cout calls from classes.
>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>> >> >> ImageToVTKImageFilter.
>> >> >>      COMP: Add link interface specification for wrapping
>> >> >> target_link_libraries.
>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>> >> >>      COMP: Fix MINCTransformIO factory registration.
>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>> >> >>      COMP: Remove unknown doxygen command in
>> AnisotropicDiffusionLBR.
>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>> 14.04.
>> >> >>      ENH: Use Windows binaries for CastXML.
>> >> >>      ENH: Add better scoping in igenerator.py.
>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>> >> >>      ENH: Add better scoping to idx.py.
>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>> >> >>      DOC: Correct spelling of Continuous.
>> >> >>      ENH: Add more progress information to IterativeClosestPoint2.
>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>> >> >>      ENH: Add ITKModuleExternal.cmake
>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>> >> >>      BUG: Use CastXML binary built in Release.
>> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>> >> >>      COMP: Set CMP0054 to new.
>> >> >>      COMP: Address line length too long for Software Guide.
>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>> >> >>      BUG: Support Python 3 wrapping module initialization.
>> >> >>      BUG: Update itkTemplate.py for Python 3.
>> >> >>      BUG: Update itkExtras.py for Python 3.
>> >> >>      BUG: Prevent Python callback addition recursion.
>> >> >>      BUG: Fix test scripts for Python 3.
>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>> >> >>      ENH: Allow projects to build against an external module.
>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>> >> >>      ENH: Rename _cable_ to _wrappers_.
>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>> ITKTransformMINC.
>> >> >>      COMP: Use itkSimpleNewMacro in
>> >> >> ThreadedIteratorRangePartitionerTest.
>> >> >>      ENH: Add wrapping support for building modules externally.
>> >> >>      BUG: Fix KWStyle test paths when building a module externally.
>> >> >>      ENH: Add Cuberille Remote module.
>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>> >> >>      DOC: Correct spelling of Continuous.
>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it
>> gets
>> >> >> installed."
>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different LabelMapTypes"
>> >> >>      ENH: Marking wrapping CMake configuration variables as
>> advanced.
>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot
>> have
>> >> >> override.
>> >> >>      COMP: Add wrapping for
>> AdaptiveHistogramEqualizationImageFilter.
>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>> >> >>      ENH: Remove old KWStyle build script.
>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>> found.
>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>> WRAPPING_SUBMODULE_ORDER.
>> >> >>      ENH: Install Python bindings into site-packages.
>> >> >>      ENH: Improve readability of Python site-packages path
>> detection.
>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned expression
>> >> >> warning.
>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>> >> >>      ENH: Improves names and export of module dependencies.
>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>> >> >>      COMP: Set CMP0054 to new.
>> >> >>      BUG: Remove unused wrapping files.
>> >> >>      BUG: Do install install wrapping development files.
>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>> >> >>      BUG: Fix detection of the gold linker.
>> >> >>      BUG: Update Python package installation locations.
>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>> >> >>      COMP: Link to VTK Python when built with Kits support.
>> >> >>      BUG: Install itk_minc2.h header.
>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>> >> >>
>> >> >> Michka Popoff (9):
>> >> >>      ENH: Update to swig 3.0.7
>> >> >>      ENH: Do not link against specific Python library on OS X
>> >> >>      COMP: Fix wrapping warnings when building with
>> >> >> ITK_WRAP_IMAGE_DIMS=2
>> >> >>      COMP: Add missing wrapping for TransformBase
>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>> >> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>> >> >> ImageFilterBase
>> >> >> module
>> >> >>      COMP: Disable incompatible modules when using Python 3 wrapping
>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>> >> >>
>> >> >> Mikhail Isakov (1):
>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
>> image
>> >> >>
>> >> >> Nick Tustison (5):
>> >> >>      BUG:  Set a default b-spline epsilon.
>> >> >>      ENH: Adding testing for closed loop.
>> >> >>      BUG:  Updating B-spline classes with the same epsilon strategy.
>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>> >> >>
>> >> >> Olivier Commowick (3):
>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL eigen
>> >> >> system
>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>> pythag
>> >> >> from V3P)
>> >> >>      BUG: Switch eigenvalues computation to double
>> >> >>
>> >> >> Pablo Hernandez-Cerdan (2):
>> >> >>      ENH: Help class for itkFlatStructuringElement with constructor
>> >> >> from
>> >> >> images.
>> >> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
>> >> >>
>> >> >> Seun Odutola (1):
>> >> >>      COMP: Fixed name clash with Apple header (check Macro), renamed
>> >> >> check
>> >> >> to Check
>> >> >>
>> >> >> Shawn Waldon (1):
>> >> >>      COMP: Set target OS X version in environment for tools using
>> >> >> compiler
>> >> >>
>> >> >> Simon Alexander (1):
>> >> >>      BUG: incorrect closest point computation
>> >> >>
>> >> >> Tobias Wood (2):
>> >> >>      BUG: LBFGSB was printing messages even with debug switched off.
>> >> >>      BUG: Removed an unguarded print statement.
>> >> >>
>> >> >> Vladimir S. FONOV (9):
>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>> >> >>      COMP: Changing the order of HDF5 library components
>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>> >> >> Transform
>> >> >>      STYLE: updated comments to properly reference LIBMINC
>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>> >> >>      MINC 2015-07-23 (c033d431)
>> >> >>      COMP: Update MINC CMake code
>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>> >> >>      MINC 2015-09-13 (95cd5374)
>> >> >>
>> >> >> Xiaoxiao Liu (1):
>> >> >>      DOC: update email address for xiaoxiao.
>> >> >>
>> >> >> Zach Williamson (10):
>> >> >>      BUG: Use correct libraries for ImageFusion tests
>> >> >>      ENH: Consolidate Library Dependencies
>> >> >>      COMP: Add a missing link to Review module
>> >> >>      COMP: Use correct linking macro in DCMTK
>> >> >>      BUG: Use correct libraries for TestKernel tests
>> >> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>> >> >>      ENH: Use new linking system macros
>> >> >>      PERF: Avoid searching private dependencies for include
>> directories
>> >> >>      COMP: Recover missing dependencies
>> >> >>      ENH: use new linking macros in Filtering module
>> >> >>
>> >> >>
>> >> >>
>> >> >> -----------------------------------------------------
>> >> >> Errors or omissions? Please fix them here:
>> >> >>
>> >> >>
>> >> >>
>> >> >>
>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>> >> >> _____________________________________
>> >> >> Powered by www.kitware.com
>> >> >>
>> >> >> Visit other Kitware open-source projects at
>> >> >> http://www.kitware.com/opensource/opensource.html
>> >> >>
>> >> >> Kitware offers ITK Training Courses, for more information visit:
>> >> >> http://www.kitware.com/products/protraining.php
>> >> >>
>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>> >> >>
>> >> >> Follow this link to subscribe/unsubscribe:
>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
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>
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Visit other Kitware open-source projects at
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Kitware offers ITK Training Courses, for more information visit:
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From skalexander at gmail.com  Wed Nov 25 16:02:21 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Wed, 25 Nov 2015 21:02:21 +0000
Subject: [ITK] [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
Message-ID: <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>

Makes sense.  At this point I am unlikely to have time to look at this
until Saturday, but have hopes for a few free hours there.

On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:

> Building git master from Nov 23rd with examples and testing enabled I get
> 14 compile errors in VS2015 debug x64. Should we coordinate our efforts in
> fixing them?
>
> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Two of the three failures look like truncation issues (like
>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>
>> The other (
>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)  is
>> less obvious.
>>
>> If I have time this evening I'll try and have a look at these.
>>
>> Is your standard test build in 32 bit ?  That might explain the
>> difference if there are some underlying type assumptions, but not obvious
>> why 2015 would trigger but not 2013.
>>
>>
>>
>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
>> wrote:
>>
>>> Ah, cool!  Here:
>>>
>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>
>>> Could you please look into the test failures?
>>>
>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>
>>> Thanks,
>>> Matt
>>>
>>>
>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <skalexander at gmail.com>
>>> wrote:
>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>> SIMON-LAP,
>>> > (actually 3 as I wasn't sure the config was right on the first one).
>>> VS2013
>>> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
>>> > truncation problem on the resuts.
>>> >
>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>> matt.mccormick at kitware.com>
>>> > wrote:
>>> >>
>>> >> Hi Simon,
>>> >>
>>> >> Thanks for testing.
>>> >>
>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>> >>
>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>> >>
>>> >> Are there any different flags? Could you please submit an Experimental
>>> >> build?
>>> >>
>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
>>> -C
>>> >> Release
>>> >>
>>> >> from a fresh build tree.
>>> >>
>>> >> Thanks,
>>> >> Matt
>>> >>
>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>> skalexander at gmail.com>
>>> >> wrote:
>>> >> > Looks like a few problems with x64 build on visual studio 2015 - do
>>> you
>>> >> > have
>>> >> > a test machine in this configuration?
>>> >> >
>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>> matt.mccormick at kitware.com>
>>> >> > wrote:
>>> >> >>
>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>> announce
>>> >> >> that
>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>> >> >> testing!
>>> >> >>
>>> >> >> Please take this opportunity to test the new features in the
>>> release
>>> >> >> candidate.
>>> >> >>
>>> >> >>
>>> >> >> To obtain the source code,
>>> >> >>
>>> >> >>   git clone http://itk.org/ITK.git
>>> >> >>  cd ITK
>>> >> >>  git checkout -q --detach v4.9rc01
>>> >> >>
>>> >> >> For more details, please see the Git documentation [1].
>>> >> >>
>>> >> >>
>>> >> >> A few selected highlights for this release:
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * New Remote modules: the Cuberille module for smooth generation of
>>> >> >> meshes
>>> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
>>> module
>>> >> >> improved edge-preserving smoothing.
>>> >> >> * Build your own ITK module outside the source tree, add continuous
>>> >> >> integration testing on GitHub, and easily add Python wrapping for
>>> your
>>> >> >> C++
>>> >> >> algorithms.
>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>> >> >> standard
>>> >> >> installation
>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>> >> >> itk::VariableLengthVector?s
>>> >> >> * Generate a FlatStructuringElement from an image
>>> >> >> * Point-set registration with time-varying B-splines
>>> >> >> * Module dependencies can now be specified as public / private /
>>> >> >> compile /
>>> >> >> test
>>> >> >>
>>> >> >>
>>> >> >> Please test the release candidate and share your experiences on the
>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new module
>>> >> >> dependency specification mechanism may unearth missing
>>> dependencies for
>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>> command.
>>> >> >>
>>> >> >>
>>> >> >> An Experimental build, which demonstrates how the test suite
>>> performs
>>> >> >> on
>>> >> >> your local build system, can be submitted to the dashboard [2]
>>> with:
>>> >> >>
>>> >> >>   mkdir ../ITK-build
>>> >> >>   cd ../ITK-build
>>> >> >>   cmake ../ITK
>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>> Submit
>>> >> >>
>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>> command.
>>> >> >>
>>> >> >> Notify the mailing list if there are any unexpected failures.
>>> Testing
>>> >> >> your own applications against the RC is also appreciated.
>>> >> >>
>>> >> >>
>>> >> >> Congratulations and well done to the 35 contributors to this
>>> release.
>>> >> >> We
>>> >> >> would especially like to recognize the new contributors: Mikhail
>>> >> >> Isakov,
>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>>> >> >> Odutola,
>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>> Williamson,
>>> >> >> Luc
>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>> >> >>
>>> >> >>
>>> >> >> The final release is scheduled for mid-December.
>>> >> >>
>>> >> >>
>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>> >> >>
>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>> >> >>
>>> >> >>
>>> >> >>
>>> >> >> New Features
>>> >> >> ---------------------
>>> >> >>
>>> >> >> Wrapping improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Python 3 supported
>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>> >> >> * NumPy bridge with VisualStudio
>>> >> >> * Wrapping for the MinimalPathExtraction module
>>> >> >> * Wrapping is now installed into Python?s site-packages directory
>>> in
>>> >> >> the
>>> >> >> ?itk? package
>>> >> >> * Wrapping package size is decreased
>>> >> >> * Better package portability on Mac OSX
>>> >> >>
>>> >> >>
>>> >> >> New Remote Modules
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Cuberille
>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>> >> >> * AnisotropicDiffusionLBR
>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>> >> >>    * Web browser reproducibility:
>>> >> >> http://www.kitware.com/blog/home/post/942
>>> >> >>
>>> >> >>
>>> >> >> Core Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * External Modules can now be developed outside of the ITK source
>>> tree
>>> >> >> and
>>> >> >> on GitHub
>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>> >> >> * New utilities in itk::Math:
>>> >> >>    * AlmostEquals
>>> >> >>    * NotAlmostEquals
>>> >> >>    * ExactlyEquals
>>> >> >>    * NotExactlyEquals
>>> >> >> * New itk::NumericTraits
>>> >> >>    * IsInteger
>>> >> >>    * IsSigned
>>> >> >> * Improved C++11 support
>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>> >> >> itk::ResourceProbesCollectorBase
>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>> >> >>
>>> >> >>
>>> >> >> Filtering Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Generate a FlatStructuringElement from an image
>>> >> >> * WarpImageFilter support VectorImage?s
>>> >> >> * ConvertLabelMap supports different LabelMap types
>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>>> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>>> >> >> module
>>> >> >>
>>> >> >>
>>> >> >> Registration Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Point-set registration with time-varying B-splines
>>> >> >>
>>> >> >>
>>> >> >> Build Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Module dependencies can now be specified as public / private /
>>> >> >> compile /
>>> >> >> test
>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>> >> >> * Option to export all library symbols on Windows:
>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>> >> >> * Expat third party library is now name mangled
>>> >> >> * Many more modules can be built as shared libraries
>>> >> >> * KWStyle is automatically built and configured when tests are
>>> built
>>> >> >>
>>> >> >>
>>> >> >> Performance Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
>>> >> >> metaprogramming
>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>> >> >>    * itk::mpl::EnableIf
>>> >> >>    * itk::mpl::IsBaseOf
>>> >> >>    * itk::mpl::IsConvertible
>>> >> >>    * itk::mpl::IsNumber
>>> >> >>    * itk::mpl::IsSame
>>> >> >>    * itk::mpl::PromoteType
>>> >> >> * Image::GetPixel performance improvements
>>> >> >> * Many itk::VariableLengthVector performance improvements
>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>> >> >> * WarpImageFilter performance improvements
>>> >> >>
>>> >> >>
>>> >> >> Documentation Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>>> >> >> * ITK Software Guide improvements
>>> >> >>    * How to use Python wrapping
>>> >> >>    * How to create an ITK module
>>> >> >>    * Improvements to segmentation examples
>>> >> >>    * Expanded Canny edge detection example
>>> >> >>    * Expanded tree container example
>>> >> >>
>>> >> >>
>>> >> >> Third Party Library Updates
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * FFTW updated to latest upstream
>>> >> >> * Build with recent OpenCV 2 and 3
>>> >> >> * Build with the latest VTK
>>> >> >> * PNG update to the latest upstream
>>> >> >> * GDCM updated to the latest upstream
>>> >> >> * KWSys updated to the latest upstream
>>> >> >> * MINC updated to the latest upstream
>>> >> >> * SWIG updated to the latest upstream
>>> >> >> * Third party PNG and MINC are now Git subtrees
>>> >> >>
>>> >> >>
>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>> >> >>
>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>>> >> >>
>>> >> >>
>>> >> >> Improved code coverage -- we are at 84.9%!
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >>
>>> >> >> * *Lots* of important bug fixes
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >>
>>> >> >> * And much more! See details in the log below.
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >>
>>> >> >>
>>> >> >> Changes from v4.8.0..v4.9rc01
>>> >> >> --------------------------------------------
>>> >> >>
>>> >> >>
>>> >> >> Abhishek Tiwari (1):
>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>> >> >>
>>> >> >> Adam Snyder (1):
>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>> >> >>
>>> >> >> Alexander Leinoff (6):
>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>> >> >> itkMath.h
>>> >> >>      COMP: Removes floating-point equality checks
>>> >> >>      ENH: COMP: Adds support for complex values to
>>> Math::AlmostEquals
>>> >> >>      ENH: Updates fftw dependency
>>> >> >>
>>> >> >> Arnaud Gelas (5):
>>> >> >>      COMP: fix warning (unused local typedef)
>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>> >> >>      DOC: add doxgen documentation for
>>> >> >> BinaryImageToLevelSetImageAdaptor
>>> >> >>      ENH: add tests to exercise
>>> itk::ThreadedIteratorRangePartitioner
>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>> >> >>
>>> >> >> Betsy McPhail (1):
>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>> >> >>
>>> >> >> Bill Hoffman (2):
>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>> >> >> installed.
>>> >> >>
>>> >> >> Bill Lorensen (4):
>>> >> >>      COMP: VTkGlue linker errors
>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>> >> >>      ENH: Bump tag for wiki examples
>>> >> >>      ENH: Better layout strategy
>>> >> >>
>>> >> >> Brad King (3):
>>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>> project
>>> >> >>
>>> >> >> Bradley Lowekamp (31):
>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>> construction
>>> >> >>      ENH: Enable base classes for templates of landmark initializer
>>> >> >>      STYLE: Use "Swap" for ITK member name
>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>> >> >>      BUG: Fix computation of Eigen analysis
>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>> >> >>      ENH: Adding initial update script from used libpng version.
>>> >> >>      ENH: removing non-subtree files for itkpng
>>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>>> >> >>      ENH: Update libpng update script for v1.6.9
>>> >> >>      BUG: Use ParameterValueType for computation of landmark affine
>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>> >> >>      ENH: Update itkpng name mangling
>>> >> >>      BUG: Use const pointer in Set method for constant
>>> ReferenceImage
>>> >> >> ivar
>>> >> >>      BUG: Increase tolerance for
>>> PhysicsBasedNonRigidRegistrationMethod
>>> >> >>      BUG: Demonstrate side effect on registration due to
>>> BSplineScatter
>>> >> >> change
>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>> >> >> ImageFilterBase
>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>> construction
>>> >> >>      BUG: Use const pointer in Set method for constant
>>> ReferenceImage
>>> >> >> ivar
>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>> MovingHistogram
>>> >> >> base
>>> >> >>      COMP: address sign unsigned comparison warning
>>> >> >>      COMP: Address signed unsigned comparison warning
>>> >> >>      COMP: Address unused member variable and methods in anonymous
>>> ns
>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>>> >> >> range
>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>>> >> >>      BUG: Reduce number of targets with MSVC
>>> >> >>
>>> >> >> Davis Vigneault (7):
>>> >> >>      DOC: Minor improvements to segmentation examples.
>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>> >> >>      DOC: Expanded TreeContainer Example
>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>> >> >>
>>> >> >> D?enan Zuki? (1):
>>> >> >>      STYLE: better formatting of the "usage" message
>>> >> >>
>>> >> >> Eugene Prilepin (1):
>>> >> >>      BUG: Fix a template name formation in python wrappings
>>> >> >>
>>> >> >> Floris Berendsen (1):
>>> >> >>      STYLE: Improve naming conventions in comments.
>>> >> >>
>>> >> >> Hans Johnson (29):
>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>> >> >>      BUG: FixedParameters should be double precision
>>> >> >>      STYLE: Minor code style issues for MGHIO
>>> >> >>      COMP: Update to version for WikiExamples
>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>> >> >>      ENH: Update MGHIO to be shared lib
>>> >> >>      ENH: Provide consistent floating point comparisons
>>> >> >>      BUG: Fix MGHIO to fix write failures
>>> >> >>      PERF: Remove floating point as sentinal value
>>> >> >>      COMP: Const correctness needs to be maintained
>>> >> >>      BUG: Preserve backwards compatibility
>>> >> >>      DOC: Provide consistent naming in comments
>>> >> >>      ENH: Conversion between transform type tolerance
>>> >> >>      STYLE: Prefer initialization to assignment
>>> >> >>      ENH: Missing ITK_OVERRIDE
>>> >> >>      COMP: Need to propagate ITKGDCM
>>> >> >>      COMP: Need to propagate ITKGDCM
>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>> >> >>      STYLE: Minor code style issues for MGHIO
>>> >> >>      COMP: Update to version for WikiExamples
>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>> >> >>      ENH: Update MGHIO to be shared lib
>>> >> >>      BUG: Fix MGHIO to fix write failures
>>> >> >>      ENH: C++11 allows for rigorous =delete
>>> >> >>      COMP: Remove unnecessary failing assert test
>>> >> >>      ENH: Ignore internal files for the Clion editor
>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>> >> >>      BUG: In configuration test need to mirror code
>>> >> >>
>>> >> >> Hyun Jae Kang (27):
>>> >> >>      BUG: Remove std::cout calls from class
>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>> >> >>      BUG: Update python example codes for ImageRegistration
>>> >> >>      BUG: Retrieve the missed wrap file
>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>> file
>>> >> >> header.
>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>> >> >> libraries
>>> >> >>      BUG: Fixed older XCode linking error
>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>>> >> >>      BUG: Remove std::cout calls from class
>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>> file
>>> >> >> header.
>>> >> >>      BUG: Fixed older XCode linking error
>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>> autological-compare
>>> >> >> warning.
>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>> >> >>      COMP: Apply latest version of KWStyle
>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>> function
>>> >> >>      ENH: Update the Report() function of
>>> >> >> itkResourceProbesCollectorBase
>>> >> >>      COMP: Fix data-conversion warning message on itkResourceProbe
>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>> >> >>      COMP: Fix data-conversion warning messages
>>> >> >>
>>> >> >> Jon Haitz Legarreta (6):
>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>> >> >>      BUG: Fix compilation issues for
>>> StatisticsUniqueLabelMapFilterTest
>>> >> >>      BUG: Fix comparison issues for
>>> itkStatisticsUniqueLabelMapFilter
>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>> >> >>      ENH: Improve code coverage for
>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>> >> >>
>>> >> >> Julien Michel (1):
>>> >> >>      ENH: Support of VectorImage as template parameters for
>>> >> >> WarpImageFilter
>>> >> >>
>>> >> >> Junjie Bai (2):
>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>> >> >>      BUG: LabelObject CopyAttribute support different LabelObject
>>> type
>>> >> >>
>>> >> >> KWSys Robot (4):
>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>> >> >>
>>> >> >> LIBPNG Upstream (2):
>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>> >> >>
>>> >> >> Laurentiu Nicola (2):
>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>>> >> >>
>>> >> >> Luc Hermitte (8):
>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>> >> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>> >> >>      COMP: Fix signed/unsigned warnings
>>> >> >>      BUG: std::copy/fill on empty VLV
>>> >> >>
>>> >> >> Lucas Gandel (4):
>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>> >> >>
>>> >> >> Mathieu Malaterre (1):
>>> >> >>      BUG: Name mangle the included expat third party library.
>>> >> >>
>>> >> >> Matthew McCormick (94):
>>> >> >>      ENH: Change itkSystemInformationTest to
>>> itkCMakeConfigurationTest.
>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>> >> >>      BUG: Remove std::cout calls from classes.
>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>> >> >> ImageToVTKImageFilter.
>>> >> >>      COMP: Add link interface specification for wrapping
>>> >> >> target_link_libraries.
>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>> >> >>      COMP: Remove unknown doxygen command in
>>> AnisotropicDiffusionLBR.
>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>> 14.04.
>>> >> >>      ENH: Use Windows binaries for CastXML.
>>> >> >>      ENH: Add better scoping in igenerator.py.
>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>> >> >>      ENH: Add better scoping to idx.py.
>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>> >> >>      DOC: Correct spelling of Continuous.
>>> >> >>      ENH: Add more progress information to IterativeClosestPoint2.
>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>> >> >>      BUG: Use CastXML binary built in Release.
>>> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>>> >> >>      COMP: Set CMP0054 to new.
>>> >> >>      COMP: Address line length too long for Software Guide.
>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>> >> >>      BUG: Prevent Python callback addition recursion.
>>> >> >>      BUG: Fix test scripts for Python 3.
>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>> >> >>      ENH: Allow projects to build against an external module.
>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>> ITKTransformMINC.
>>> >> >>      COMP: Use itkSimpleNewMacro in
>>> >> >> ThreadedIteratorRangePartitionerTest.
>>> >> >>      ENH: Add wrapping support for building modules externally.
>>> >> >>      BUG: Fix KWStyle test paths when building a module externally.
>>> >> >>      ENH: Add Cuberille Remote module.
>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>> >> >>      DOC: Correct spelling of Continuous.
>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it
>>> gets
>>> >> >> installed."
>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>> LabelMapTypes"
>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>> advanced.
>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot
>>> have
>>> >> >> override.
>>> >> >>      COMP: Add wrapping for
>>> AdaptiveHistogramEqualizationImageFilter.
>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>> >> >>      ENH: Remove old KWStyle build script.
>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>> found.
>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>> WRAPPING_SUBMODULE_ORDER.
>>> >> >>      ENH: Install Python bindings into site-packages.
>>> >> >>      ENH: Improve readability of Python site-packages path
>>> detection.
>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>> expression
>>> >> >> warning.
>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>> >> >>      ENH: Improves names and export of module dependencies.
>>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>> >> >>      COMP: Set CMP0054 to new.
>>> >> >>      BUG: Remove unused wrapping files.
>>> >> >>      BUG: Do install install wrapping development files.
>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>> >> >>      BUG: Fix detection of the gold linker.
>>> >> >>      BUG: Update Python package installation locations.
>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>> >> >>      BUG: Install itk_minc2.h header.
>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>> >> >>
>>> >> >> Michka Popoff (9):
>>> >> >>      ENH: Update to swig 3.0.7
>>> >> >>      ENH: Do not link against specific Python library on OS X
>>> >> >>      COMP: Fix wrapping warnings when building with
>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>> >> >>      COMP: Add missing wrapping for TransformBase
>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>> wrapping
>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>> >> >> ImageFilterBase
>>> >> >> module
>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>> wrapping
>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>> >> >>
>>> >> >> Mikhail Isakov (1):
>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
>>> image
>>> >> >>
>>> >> >> Nick Tustison (5):
>>> >> >>      BUG:  Set a default b-spline epsilon.
>>> >> >>      ENH: Adding testing for closed loop.
>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>> strategy.
>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>> >> >>
>>> >> >> Olivier Commowick (3):
>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>> eigen
>>> >> >> system
>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>>> pythag
>>> >> >> from V3P)
>>> >> >>      BUG: Switch eigenvalues computation to double
>>> >> >>
>>> >> >> Pablo Hernandez-Cerdan (2):
>>> >> >>      ENH: Help class for itkFlatStructuringElement with constructor
>>> >> >> from
>>> >> >> images.
>>> >> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
>>> >> >>
>>> >> >> Seun Odutola (1):
>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>> renamed
>>> >> >> check
>>> >> >> to Check
>>> >> >>
>>> >> >> Shawn Waldon (1):
>>> >> >>      COMP: Set target OS X version in environment for tools using
>>> >> >> compiler
>>> >> >>
>>> >> >> Simon Alexander (1):
>>> >> >>      BUG: incorrect closest point computation
>>> >> >>
>>> >> >> Tobias Wood (2):
>>> >> >>      BUG: LBFGSB was printing messages even with debug switched
>>> off.
>>> >> >>      BUG: Removed an unguarded print statement.
>>> >> >>
>>> >> >> Vladimir S. FONOV (9):
>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>> >> >>      COMP: Changing the order of HDF5 library components
>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>> >> >> Transform
>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>> >> >>      MINC 2015-07-23 (c033d431)
>>> >> >>      COMP: Update MINC CMake code
>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>> >> >>      MINC 2015-09-13 (95cd5374)
>>> >> >>
>>> >> >> Xiaoxiao Liu (1):
>>> >> >>      DOC: update email address for xiaoxiao.
>>> >> >>
>>> >> >> Zach Williamson (10):
>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>> >> >>      ENH: Consolidate Library Dependencies
>>> >> >>      COMP: Add a missing link to Review module
>>> >> >>      COMP: Use correct linking macro in DCMTK
>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>> >> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>>> >> >>      ENH: Use new linking system macros
>>> >> >>      PERF: Avoid searching private dependencies for include
>>> directories
>>> >> >>      COMP: Recover missing dependencies
>>> >> >>      ENH: use new linking macros in Filtering module
>>> >> >>
>>> >> >>
>>> >> >>
>>> >> >> -----------------------------------------------------
>>> >> >> Errors or omissions? Please fix them here:
>>> >> >>
>>> >> >>
>>> >> >>
>>> >> >>
>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>> >> >> _____________________________________
>>> >> >> Powered by www.kitware.com
>>> >> >>
>>> >> >> Visit other Kitware open-source projects at
>>> >> >> http://www.kitware.com/opensource/opensource.html
>>> >> >>
>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>> >> >> http://www.kitware.com/products/protraining.php
>>> >> >>
>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>> >> >>
>>> >> >> Follow this link to subscribe/unsubscribe:
>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>
>>
>> _______________________________________________
>
>
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>>
> http://kitware.com/products/protraining.php
>
>
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>>
> http://public.kitware.com/mailman/listinfo/insight-developers
>>
>>
>
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From skalexander at gmail.com  Wed Nov 25 16:02:21 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Wed, 25 Nov 2015 21:02:21 +0000
Subject: [ITK] [ITK-users] [ITK-dev] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
Message-ID: <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>

Makes sense.  At this point I am unlikely to have time to look at this
until Saturday, but have hopes for a few free hours there.

On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:

> Building git master from Nov 23rd with examples and testing enabled I get
> 14 compile errors in VS2015 debug x64. Should we coordinate our efforts in
> fixing them?
>
> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Two of the three failures look like truncation issues (like
>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>
>> The other (
>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)  is
>> less obvious.
>>
>> If I have time this evening I'll try and have a look at these.
>>
>> Is your standard test build in 32 bit ?  That might explain the
>> difference if there are some underlying type assumptions, but not obvious
>> why 2015 would trigger but not 2013.
>>
>>
>>
>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
>> wrote:
>>
>>> Ah, cool!  Here:
>>>
>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>
>>> Could you please look into the test failures?
>>>
>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>
>>> Thanks,
>>> Matt
>>>
>>>
>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <skalexander at gmail.com>
>>> wrote:
>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>> SIMON-LAP,
>>> > (actually 3 as I wasn't sure the config was right on the first one).
>>> VS2013
>>> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
>>> > truncation problem on the resuts.
>>> >
>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>> matt.mccormick at kitware.com>
>>> > wrote:
>>> >>
>>> >> Hi Simon,
>>> >>
>>> >> Thanks for testing.
>>> >>
>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>> >>
>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>> >>
>>> >> Are there any different flags? Could you please submit an Experimental
>>> >> build?
>>> >>
>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T Submit
>>> -C
>>> >> Release
>>> >>
>>> >> from a fresh build tree.
>>> >>
>>> >> Thanks,
>>> >> Matt
>>> >>
>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>> skalexander at gmail.com>
>>> >> wrote:
>>> >> > Looks like a few problems with x64 build on visual studio 2015 - do
>>> you
>>> >> > have
>>> >> > a test machine in this configuration?
>>> >> >
>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>> matt.mccormick at kitware.com>
>>> >> > wrote:
>>> >> >>
>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>> announce
>>> >> >> that
>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>> >> >> testing!
>>> >> >>
>>> >> >> Please take this opportunity to test the new features in the
>>> release
>>> >> >> candidate.
>>> >> >>
>>> >> >>
>>> >> >> To obtain the source code,
>>> >> >>
>>> >> >>   git clone http://itk.org/ITK.git
>>> >> >>  cd ITK
>>> >> >>  git checkout -q --detach v4.9rc01
>>> >> >>
>>> >> >> For more details, please see the Git documentation [1].
>>> >> >>
>>> >> >>
>>> >> >> A few selected highlights for this release:
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * New Remote modules: the Cuberille module for smooth generation of
>>> >> >> meshes
>>> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
>>> module
>>> >> >> improved edge-preserving smoothing.
>>> >> >> * Build your own ITK module outside the source tree, add continuous
>>> >> >> integration testing on GitHub, and easily add Python wrapping for
>>> your
>>> >> >> C++
>>> >> >> algorithms.
>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>> >> >> standard
>>> >> >> installation
>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>> >> >> itk::VariableLengthVector?s
>>> >> >> * Generate a FlatStructuringElement from an image
>>> >> >> * Point-set registration with time-varying B-splines
>>> >> >> * Module dependencies can now be specified as public / private /
>>> >> >> compile /
>>> >> >> test
>>> >> >>
>>> >> >>
>>> >> >> Please test the release candidate and share your experiences on the
>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new module
>>> >> >> dependency specification mechanism may unearth missing
>>> dependencies for
>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>> command.
>>> >> >>
>>> >> >>
>>> >> >> An Experimental build, which demonstrates how the test suite
>>> performs
>>> >> >> on
>>> >> >> your local build system, can be submitted to the dashboard [2]
>>> with:
>>> >> >>
>>> >> >>   mkdir ../ITK-build
>>> >> >>   cd ../ITK-build
>>> >> >>   cmake ../ITK
>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>> Submit
>>> >> >>
>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>> command.
>>> >> >>
>>> >> >> Notify the mailing list if there are any unexpected failures.
>>> Testing
>>> >> >> your own applications against the RC is also appreciated.
>>> >> >>
>>> >> >>
>>> >> >> Congratulations and well done to the 35 contributors to this
>>> release.
>>> >> >> We
>>> >> >> would especially like to recognize the new contributors: Mikhail
>>> >> >> Isakov,
>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>>> >> >> Odutola,
>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>> Williamson,
>>> >> >> Luc
>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>> >> >>
>>> >> >>
>>> >> >> The final release is scheduled for mid-December.
>>> >> >>
>>> >> >>
>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>> >> >>
>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>> >> >>
>>> >> >>
>>> >> >>
>>> >> >> New Features
>>> >> >> ---------------------
>>> >> >>
>>> >> >> Wrapping improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Python 3 supported
>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>> >> >> * NumPy bridge with VisualStudio
>>> >> >> * Wrapping for the MinimalPathExtraction module
>>> >> >> * Wrapping is now installed into Python?s site-packages directory
>>> in
>>> >> >> the
>>> >> >> ?itk? package
>>> >> >> * Wrapping package size is decreased
>>> >> >> * Better package portability on Mac OSX
>>> >> >>
>>> >> >>
>>> >> >> New Remote Modules
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Cuberille
>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>> >> >> * AnisotropicDiffusionLBR
>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>> >> >>    * Web browser reproducibility:
>>> >> >> http://www.kitware.com/blog/home/post/942
>>> >> >>
>>> >> >>
>>> >> >> Core Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * External Modules can now be developed outside of the ITK source
>>> tree
>>> >> >> and
>>> >> >> on GitHub
>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>> >> >> * New utilities in itk::Math:
>>> >> >>    * AlmostEquals
>>> >> >>    * NotAlmostEquals
>>> >> >>    * ExactlyEquals
>>> >> >>    * NotExactlyEquals
>>> >> >> * New itk::NumericTraits
>>> >> >>    * IsInteger
>>> >> >>    * IsSigned
>>> >> >> * Improved C++11 support
>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>> >> >> itk::ResourceProbesCollectorBase
>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>> >> >>
>>> >> >>
>>> >> >> Filtering Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Generate a FlatStructuringElement from an image
>>> >> >> * WarpImageFilter support VectorImage?s
>>> >> >> * ConvertLabelMap supports different LabelMap types
>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>>> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>>> >> >> module
>>> >> >>
>>> >> >>
>>> >> >> Registration Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Point-set registration with time-varying B-splines
>>> >> >>
>>> >> >>
>>> >> >> Build Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Module dependencies can now be specified as public / private /
>>> >> >> compile /
>>> >> >> test
>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>> >> >> * Option to export all library symbols on Windows:
>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>> >> >> * Expat third party library is now name mangled
>>> >> >> * Many more modules can be built as shared libraries
>>> >> >> * KWStyle is automatically built and configured when tests are
>>> built
>>> >> >>
>>> >> >>
>>> >> >> Performance Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members for
>>> >> >> metaprogramming
>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>> >> >>    * itk::mpl::EnableIf
>>> >> >>    * itk::mpl::IsBaseOf
>>> >> >>    * itk::mpl::IsConvertible
>>> >> >>    * itk::mpl::IsNumber
>>> >> >>    * itk::mpl::IsSame
>>> >> >>    * itk::mpl::PromoteType
>>> >> >> * Image::GetPixel performance improvements
>>> >> >> * Many itk::VariableLengthVector performance improvements
>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>> >> >> * WarpImageFilter performance improvements
>>> >> >>
>>> >> >>
>>> >> >> Documentation Improvements
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>>> >> >> * ITK Software Guide improvements
>>> >> >>    * How to use Python wrapping
>>> >> >>    * How to create an ITK module
>>> >> >>    * Improvements to segmentation examples
>>> >> >>    * Expanded Canny edge detection example
>>> >> >>    * Expanded tree container example
>>> >> >>
>>> >> >>
>>> >> >> Third Party Library Updates
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * FFTW updated to latest upstream
>>> >> >> * Build with recent OpenCV 2 and 3
>>> >> >> * Build with the latest VTK
>>> >> >> * PNG update to the latest upstream
>>> >> >> * GDCM updated to the latest upstream
>>> >> >> * KWSys updated to the latest upstream
>>> >> >> * MINC updated to the latest upstream
>>> >> >> * SWIG updated to the latest upstream
>>> >> >> * Third party PNG and MINC are now Git subtrees
>>> >> >>
>>> >> >>
>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>> >> >>
>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>>> >> >>
>>> >> >>
>>> >> >> Improved code coverage -- we are at 84.9%!
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >>
>>> >> >> * *Lots* of important bug fixes
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >>
>>> >> >> * And much more! See details in the log below.
>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >> >>
>>> >> >>
>>> >> >>
>>> >> >> Changes from v4.8.0..v4.9rc01
>>> >> >> --------------------------------------------
>>> >> >>
>>> >> >>
>>> >> >> Abhishek Tiwari (1):
>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>> >> >>
>>> >> >> Adam Snyder (1):
>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>> >> >>
>>> >> >> Alexander Leinoff (6):
>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>> >> >> itkMath.h
>>> >> >>      COMP: Removes floating-point equality checks
>>> >> >>      ENH: COMP: Adds support for complex values to
>>> Math::AlmostEquals
>>> >> >>      ENH: Updates fftw dependency
>>> >> >>
>>> >> >> Arnaud Gelas (5):
>>> >> >>      COMP: fix warning (unused local typedef)
>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>> >> >>      DOC: add doxgen documentation for
>>> >> >> BinaryImageToLevelSetImageAdaptor
>>> >> >>      ENH: add tests to exercise
>>> itk::ThreadedIteratorRangePartitioner
>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>> >> >>
>>> >> >> Betsy McPhail (1):
>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>> >> >>
>>> >> >> Bill Hoffman (2):
>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>> >> >> installed.
>>> >> >>
>>> >> >> Bill Lorensen (4):
>>> >> >>      COMP: VTkGlue linker errors
>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>> >> >>      ENH: Bump tag for wiki examples
>>> >> >>      ENH: Better layout strategy
>>> >> >>
>>> >> >> Brad King (3):
>>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>> project
>>> >> >>
>>> >> >> Bradley Lowekamp (31):
>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>> construction
>>> >> >>      ENH: Enable base classes for templates of landmark initializer
>>> >> >>      STYLE: Use "Swap" for ITK member name
>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>> >> >>      BUG: Fix computation of Eigen analysis
>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>> >> >>      ENH: Adding initial update script from used libpng version.
>>> >> >>      ENH: removing non-subtree files for itkpng
>>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>>> >> >>      ENH: Update libpng update script for v1.6.9
>>> >> >>      BUG: Use ParameterValueType for computation of landmark affine
>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>> >> >>      ENH: Update itkpng name mangling
>>> >> >>      BUG: Use const pointer in Set method for constant
>>> ReferenceImage
>>> >> >> ivar
>>> >> >>      BUG: Increase tolerance for
>>> PhysicsBasedNonRigidRegistrationMethod
>>> >> >>      BUG: Demonstrate side effect on registration due to
>>> BSplineScatter
>>> >> >> change
>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>> >> >> ImageFilterBase
>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>> construction
>>> >> >>      BUG: Use const pointer in Set method for constant
>>> ReferenceImage
>>> >> >> ivar
>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>> MovingHistogram
>>> >> >> base
>>> >> >>      COMP: address sign unsigned comparison warning
>>> >> >>      COMP: Address signed unsigned comparison warning
>>> >> >>      COMP: Address unused member variable and methods in anonymous
>>> ns
>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>>> >> >> range
>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>>> >> >>      BUG: Reduce number of targets with MSVC
>>> >> >>
>>> >> >> Davis Vigneault (7):
>>> >> >>      DOC: Minor improvements to segmentation examples.
>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>> >> >>      DOC: Expanded TreeContainer Example
>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>> >> >>
>>> >> >> D?enan Zuki? (1):
>>> >> >>      STYLE: better formatting of the "usage" message
>>> >> >>
>>> >> >> Eugene Prilepin (1):
>>> >> >>      BUG: Fix a template name formation in python wrappings
>>> >> >>
>>> >> >> Floris Berendsen (1):
>>> >> >>      STYLE: Improve naming conventions in comments.
>>> >> >>
>>> >> >> Hans Johnson (29):
>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>> >> >>      BUG: FixedParameters should be double precision
>>> >> >>      STYLE: Minor code style issues for MGHIO
>>> >> >>      COMP: Update to version for WikiExamples
>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>> >> >>      ENH: Update MGHIO to be shared lib
>>> >> >>      ENH: Provide consistent floating point comparisons
>>> >> >>      BUG: Fix MGHIO to fix write failures
>>> >> >>      PERF: Remove floating point as sentinal value
>>> >> >>      COMP: Const correctness needs to be maintained
>>> >> >>      BUG: Preserve backwards compatibility
>>> >> >>      DOC: Provide consistent naming in comments
>>> >> >>      ENH: Conversion between transform type tolerance
>>> >> >>      STYLE: Prefer initialization to assignment
>>> >> >>      ENH: Missing ITK_OVERRIDE
>>> >> >>      COMP: Need to propagate ITKGDCM
>>> >> >>      COMP: Need to propagate ITKGDCM
>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>> >> >>      STYLE: Minor code style issues for MGHIO
>>> >> >>      COMP: Update to version for WikiExamples
>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>> >> >>      ENH: Update MGHIO to be shared lib
>>> >> >>      BUG: Fix MGHIO to fix write failures
>>> >> >>      ENH: C++11 allows for rigorous =delete
>>> >> >>      COMP: Remove unnecessary failing assert test
>>> >> >>      ENH: Ignore internal files for the Clion editor
>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>> >> >>      BUG: In configuration test need to mirror code
>>> >> >>
>>> >> >> Hyun Jae Kang (27):
>>> >> >>      BUG: Remove std::cout calls from class
>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>> >> >>      BUG: Update python example codes for ImageRegistration
>>> >> >>      BUG: Retrieve the missed wrap file
>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>> file
>>> >> >> header.
>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>> >> >> libraries
>>> >> >>      BUG: Fixed older XCode linking error
>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>>> >> >>      BUG: Remove std::cout calls from class
>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>> file
>>> >> >> header.
>>> >> >>      BUG: Fixed older XCode linking error
>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>> autological-compare
>>> >> >> warning.
>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>> >> >>      COMP: Apply latest version of KWStyle
>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>> function
>>> >> >>      ENH: Update the Report() function of
>>> >> >> itkResourceProbesCollectorBase
>>> >> >>      COMP: Fix data-conversion warning message on itkResourceProbe
>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>> >> >>      COMP: Fix data-conversion warning messages
>>> >> >>
>>> >> >> Jon Haitz Legarreta (6):
>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>> >> >>      BUG: Fix compilation issues for
>>> StatisticsUniqueLabelMapFilterTest
>>> >> >>      BUG: Fix comparison issues for
>>> itkStatisticsUniqueLabelMapFilter
>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>> >> >>      ENH: Improve code coverage for
>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>> >> >>
>>> >> >> Julien Michel (1):
>>> >> >>      ENH: Support of VectorImage as template parameters for
>>> >> >> WarpImageFilter
>>> >> >>
>>> >> >> Junjie Bai (2):
>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>> >> >>      BUG: LabelObject CopyAttribute support different LabelObject
>>> type
>>> >> >>
>>> >> >> KWSys Robot (4):
>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>> >> >>
>>> >> >> LIBPNG Upstream (2):
>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>> >> >>
>>> >> >> Laurentiu Nicola (2):
>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>>> >> >>
>>> >> >> Luc Hermitte (8):
>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>> >> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>> >> >>      COMP: Fix signed/unsigned warnings
>>> >> >>      BUG: std::copy/fill on empty VLV
>>> >> >>
>>> >> >> Lucas Gandel (4):
>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review Module
>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>> >> >>
>>> >> >> Mathieu Malaterre (1):
>>> >> >>      BUG: Name mangle the included expat third party library.
>>> >> >>
>>> >> >> Matthew McCormick (94):
>>> >> >>      ENH: Change itkSystemInformationTest to
>>> itkCMakeConfigurationTest.
>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>> >> >>      BUG: Remove std::cout calls from classes.
>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>> >> >> ImageToVTKImageFilter.
>>> >> >>      COMP: Add link interface specification for wrapping
>>> >> >> target_link_libraries.
>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>> >> >>      COMP: Remove unknown doxygen command in
>>> AnisotropicDiffusionLBR.
>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>> 14.04.
>>> >> >>      ENH: Use Windows binaries for CastXML.
>>> >> >>      ENH: Add better scoping in igenerator.py.
>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>> >> >>      ENH: Add better scoping to idx.py.
>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>> >> >>      DOC: Correct spelling of Continuous.
>>> >> >>      ENH: Add more progress information to IterativeClosestPoint2.
>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>> >> >>      BUG: Use CastXML binary built in Release.
>>> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>>> >> >>      COMP: Set CMP0054 to new.
>>> >> >>      COMP: Address line length too long for Software Guide.
>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>> >> >>      BUG: Prevent Python callback addition recursion.
>>> >> >>      BUG: Fix test scripts for Python 3.
>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>> >> >>      ENH: Allow projects to build against an external module.
>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>> ITKTransformMINC.
>>> >> >>      COMP: Use itkSimpleNewMacro in
>>> >> >> ThreadedIteratorRangePartitionerTest.
>>> >> >>      ENH: Add wrapping support for building modules externally.
>>> >> >>      BUG: Fix KWStyle test paths when building a module externally.
>>> >> >>      ENH: Add Cuberille Remote module.
>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>> >> >>      DOC: Correct spelling of Continuous.
>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it
>>> gets
>>> >> >> installed."
>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>> LabelMapTypes"
>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>> advanced.
>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot
>>> have
>>> >> >> override.
>>> >> >>      COMP: Add wrapping for
>>> AdaptiveHistogramEqualizationImageFilter.
>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>> >> >>      ENH: Remove old KWStyle build script.
>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>> found.
>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>> WRAPPING_SUBMODULE_ORDER.
>>> >> >>      ENH: Install Python bindings into site-packages.
>>> >> >>      ENH: Improve readability of Python site-packages path
>>> detection.
>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>> expression
>>> >> >> warning.
>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>> >> >>      ENH: Improves names and export of module dependencies.
>>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>> >> >>      COMP: Set CMP0054 to new.
>>> >> >>      BUG: Remove unused wrapping files.
>>> >> >>      BUG: Do install install wrapping development files.
>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>> >> >>      BUG: Fix detection of the gold linker.
>>> >> >>      BUG: Update Python package installation locations.
>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>> >> >>      BUG: Install itk_minc2.h header.
>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>> >> >>
>>> >> >> Michka Popoff (9):
>>> >> >>      ENH: Update to swig 3.0.7
>>> >> >>      ENH: Do not link against specific Python library on OS X
>>> >> >>      COMP: Fix wrapping warnings when building with
>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>> >> >>      COMP: Add missing wrapping for TransformBase
>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>> wrapping
>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>> >> >> ImageFilterBase
>>> >> >> module
>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>> wrapping
>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>> >> >>
>>> >> >> Mikhail Isakov (1):
>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
>>> image
>>> >> >>
>>> >> >> Nick Tustison (5):
>>> >> >>      BUG:  Set a default b-spline epsilon.
>>> >> >>      ENH: Adding testing for closed loop.
>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>> strategy.
>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>> >> >>
>>> >> >> Olivier Commowick (3):
>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>> eigen
>>> >> >> system
>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>>> pythag
>>> >> >> from V3P)
>>> >> >>      BUG: Switch eigenvalues computation to double
>>> >> >>
>>> >> >> Pablo Hernandez-Cerdan (2):
>>> >> >>      ENH: Help class for itkFlatStructuringElement with constructor
>>> >> >> from
>>> >> >> images.
>>> >> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
>>> >> >>
>>> >> >> Seun Odutola (1):
>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>> renamed
>>> >> >> check
>>> >> >> to Check
>>> >> >>
>>> >> >> Shawn Waldon (1):
>>> >> >>      COMP: Set target OS X version in environment for tools using
>>> >> >> compiler
>>> >> >>
>>> >> >> Simon Alexander (1):
>>> >> >>      BUG: incorrect closest point computation
>>> >> >>
>>> >> >> Tobias Wood (2):
>>> >> >>      BUG: LBFGSB was printing messages even with debug switched
>>> off.
>>> >> >>      BUG: Removed an unguarded print statement.
>>> >> >>
>>> >> >> Vladimir S. FONOV (9):
>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>> >> >>      COMP: Changing the order of HDF5 library components
>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>> >> >> Transform
>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>> >> >>      MINC 2015-07-23 (c033d431)
>>> >> >>      COMP: Update MINC CMake code
>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>> >> >>      MINC 2015-09-13 (95cd5374)
>>> >> >>
>>> >> >> Xiaoxiao Liu (1):
>>> >> >>      DOC: update email address for xiaoxiao.
>>> >> >>
>>> >> >> Zach Williamson (10):
>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>> >> >>      ENH: Consolidate Library Dependencies
>>> >> >>      COMP: Add a missing link to Review module
>>> >> >>      COMP: Use correct linking macro in DCMTK
>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>> >> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>>> >> >>      ENH: Use new linking system macros
>>> >> >>      PERF: Avoid searching private dependencies for include
>>> directories
>>> >> >>      COMP: Recover missing dependencies
>>> >> >>      ENH: use new linking macros in Filtering module
>>> >> >>
>>> >> >>
>>> >> >>
>>> >> >> -----------------------------------------------------
>>> >> >> Errors or omissions? Please fix them here:
>>> >> >>
>>> >> >>
>>> >> >>
>>> >> >>
>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>> >> >> _____________________________________
>>> >> >> Powered by www.kitware.com
>>> >> >>
>>> >> >> Visit other Kitware open-source projects at
>>> >> >> http://www.kitware.com/opensource/opensource.html
>>> >> >>
>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>> >> >> http://www.kitware.com/products/protraining.php
>>> >> >>
>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>> >> >>
>>> >> >> Follow this link to subscribe/unsubscribe:
>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>
>>
>> _______________________________________________
>
>
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>>
> http://kitware.com/products/protraining.php
>
>
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>>
> http://public.kitware.com/mailman/listinfo/insight-developers
>>
>>
>
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Powered by www.kitware.com

Visit other Kitware open-source projects at
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Please keep messages on-topic and check the ITK FAQ at:
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From dzenanz at gmail.com  Wed Nov 25 16:05:50 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 25 Nov 2015 16:05:50 -0500
Subject: [ITK] [ITK-users] [ITK-dev] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
Message-ID: <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>

OK I will work on it for an hour or two now, and I will make a branch and
push it to Gerrit so whoever wants can pick up from there and keep updating
it.

On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
wrote:

> Makes sense.  At this point I am unlikely to have time to look at this
> until Saturday, but have hopes for a few free hours there.
>
> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> Building git master from Nov 23rd with examples and testing enabled I get
>> 14 compile errors in VS2015 debug x64. Should we coordinate our efforts in
>> fixing them?
>>
>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>>
>>> Two of the three failures look like truncation issues (like
>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>
>>> The other (
>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>  is less obvious.
>>>
>>> If I have time this evening I'll try and have a look at these.
>>>
>>> Is your standard test build in 32 bit ?  That might explain the
>>> difference if there are some underlying type assumptions, but not obvious
>>> why 2015 would trigger but not 2013.
>>>
>>>
>>>
>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
>>> wrote:
>>>
>>>> Ah, cool!  Here:
>>>>
>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>
>>>> Could you please look into the test failures?
>>>>
>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>
>>>> Thanks,
>>>> Matt
>>>>
>>>>
>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>> skalexander at gmail.com> wrote:
>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>> SIMON-LAP,
>>>> > (actually 3 as I wasn't sure the config was right on the first one).
>>>> VS2013
>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
>>>> > truncation problem on the resuts.
>>>> >
>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>> matt.mccormick at kitware.com>
>>>> > wrote:
>>>> >>
>>>> >> Hi Simon,
>>>> >>
>>>> >> Thanks for testing.
>>>> >>
>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>> >>
>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>> >>
>>>> >> Are there any different flags? Could you please submit an
>>>> Experimental
>>>> >> build?
>>>> >>
>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>> Submit -C
>>>> >> Release
>>>> >>
>>>> >> from a fresh build tree.
>>>> >>
>>>> >> Thanks,
>>>> >> Matt
>>>> >>
>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>> skalexander at gmail.com>
>>>> >> wrote:
>>>> >> > Looks like a few problems with x64 build on visual studio 2015 -
>>>> do you
>>>> >> > have
>>>> >> > a test machine in this configuration?
>>>> >> >
>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>> matt.mccormick at kitware.com>
>>>> >> > wrote:
>>>> >> >>
>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>> announce
>>>> >> >> that
>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>>> >> >> testing!
>>>> >> >>
>>>> >> >> Please take this opportunity to test the new features in the
>>>> release
>>>> >> >> candidate.
>>>> >> >>
>>>> >> >>
>>>> >> >> To obtain the source code,
>>>> >> >>
>>>> >> >>   git clone http://itk.org/ITK.git
>>>> >> >>  cd ITK
>>>> >> >>  git checkout -q --detach v4.9rc01
>>>> >> >>
>>>> >> >> For more details, please see the Git documentation [1].
>>>> >> >>
>>>> >> >>
>>>> >> >> A few selected highlights for this release:
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * New Remote modules: the Cuberille module for smooth generation
>>>> of
>>>> >> >> meshes
>>>> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
>>>> module
>>>> >> >> improved edge-preserving smoothing.
>>>> >> >> * Build your own ITK module outside the source tree, add
>>>> continuous
>>>> >> >> integration testing on GitHub, and easily add Python wrapping for
>>>> your
>>>> >> >> C++
>>>> >> >> algorithms.
>>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>>> >> >> standard
>>>> >> >> installation
>>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>>> >> >> itk::VariableLengthVector?s
>>>> >> >> * Generate a FlatStructuringElement from an image
>>>> >> >> * Point-set registration with time-varying B-splines
>>>> >> >> * Module dependencies can now be specified as public / private /
>>>> >> >> compile /
>>>> >> >> test
>>>> >> >>
>>>> >> >>
>>>> >> >> Please test the release candidate and share your experiences on
>>>> the
>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>> module
>>>> >> >> dependency specification mechanism may unearth missing
>>>> dependencies for
>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>> command.
>>>> >> >>
>>>> >> >>
>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>> performs
>>>> >> >> on
>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>> with:
>>>> >> >>
>>>> >> >>   mkdir ../ITK-build
>>>> >> >>   cd ../ITK-build
>>>> >> >>   cmake ../ITK
>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>> Submit
>>>> >> >>
>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>> command.
>>>> >> >>
>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>> Testing
>>>> >> >> your own applications against the RC is also appreciated.
>>>> >> >>
>>>> >> >>
>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>> release.
>>>> >> >> We
>>>> >> >> would especially like to recognize the new contributors: Mikhail
>>>> >> >> Isakov,
>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>>>> >> >> Odutola,
>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>> Williamson,
>>>> >> >> Luc
>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>> >> >>
>>>> >> >>
>>>> >> >> The final release is scheduled for mid-December.
>>>> >> >>
>>>> >> >>
>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>> >> >>
>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> >> >> New Features
>>>> >> >> ---------------------
>>>> >> >>
>>>> >> >> Wrapping improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Python 3 supported
>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>> >> >> * NumPy bridge with VisualStudio
>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>> >> >> * Wrapping is now installed into Python?s site-packages directory
>>>> in
>>>> >> >> the
>>>> >> >> ?itk? package
>>>> >> >> * Wrapping package size is decreased
>>>> >> >> * Better package portability on Mac OSX
>>>> >> >>
>>>> >> >>
>>>> >> >> New Remote Modules
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Cuberille
>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>> >> >> * AnisotropicDiffusionLBR
>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>> >> >>    * Web browser reproducibility:
>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>> >> >>
>>>> >> >>
>>>> >> >> Core Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * External Modules can now be developed outside of the ITK source
>>>> tree
>>>> >> >> and
>>>> >> >> on GitHub
>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>> >> >> * New utilities in itk::Math:
>>>> >> >>    * AlmostEquals
>>>> >> >>    * NotAlmostEquals
>>>> >> >>    * ExactlyEquals
>>>> >> >>    * NotExactlyEquals
>>>> >> >> * New itk::NumericTraits
>>>> >> >>    * IsInteger
>>>> >> >>    * IsSigned
>>>> >> >> * Improved C++11 support
>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>> >> >> itk::ResourceProbesCollectorBase
>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>> >> >>
>>>> >> >>
>>>> >> >> Filtering Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Generate a FlatStructuringElement from an image
>>>> >> >> * WarpImageFilter support VectorImage?s
>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>>>> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>>>> >> >> module
>>>> >> >>
>>>> >> >>
>>>> >> >> Registration Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Point-set registration with time-varying B-splines
>>>> >> >>
>>>> >> >>
>>>> >> >> Build Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Module dependencies can now be specified as public / private /
>>>> >> >> compile /
>>>> >> >> test
>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>> >> >> * Option to export all library symbols on Windows:
>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>> >> >> * Expat third party library is now name mangled
>>>> >> >> * Many more modules can be built as shared libraries
>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>> built
>>>> >> >>
>>>> >> >>
>>>> >> >> Performance Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members
>>>> for
>>>> >> >> metaprogramming
>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>> >> >>    * itk::mpl::EnableIf
>>>> >> >>    * itk::mpl::IsBaseOf
>>>> >> >>    * itk::mpl::IsConvertible
>>>> >> >>    * itk::mpl::IsNumber
>>>> >> >>    * itk::mpl::IsSame
>>>> >> >>    * itk::mpl::PromoteType
>>>> >> >> * Image::GetPixel performance improvements
>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>> >> >> * WarpImageFilter performance improvements
>>>> >> >>
>>>> >> >>
>>>> >> >> Documentation Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>>>> >> >> * ITK Software Guide improvements
>>>> >> >>    * How to use Python wrapping
>>>> >> >>    * How to create an ITK module
>>>> >> >>    * Improvements to segmentation examples
>>>> >> >>    * Expanded Canny edge detection example
>>>> >> >>    * Expanded tree container example
>>>> >> >>
>>>> >> >>
>>>> >> >> Third Party Library Updates
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * FFTW updated to latest upstream
>>>> >> >> * Build with recent OpenCV 2 and 3
>>>> >> >> * Build with the latest VTK
>>>> >> >> * PNG update to the latest upstream
>>>> >> >> * GDCM updated to the latest upstream
>>>> >> >> * KWSys updated to the latest upstream
>>>> >> >> * MINC updated to the latest upstream
>>>> >> >> * SWIG updated to the latest upstream
>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>> >> >>
>>>> >> >>
>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>> >> >>
>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>>>> >> >>
>>>> >> >>
>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >>
>>>> >> >> * *Lots* of important bug fixes
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >>
>>>> >> >> * And much more! See details in the log below.
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>> >> >> --------------------------------------------
>>>> >> >>
>>>> >> >>
>>>> >> >> Abhishek Tiwari (1):
>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>> >> >>
>>>> >> >> Adam Snyder (1):
>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>> >> >>
>>>> >> >> Alexander Leinoff (6):
>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>> >> >> itkMath.h
>>>> >> >>      COMP: Removes floating-point equality checks
>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>> Math::AlmostEquals
>>>> >> >>      ENH: Updates fftw dependency
>>>> >> >>
>>>> >> >> Arnaud Gelas (5):
>>>> >> >>      COMP: fix warning (unused local typedef)
>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>> >> >>      DOC: add doxgen documentation for
>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>> >> >>      ENH: add tests to exercise
>>>> itk::ThreadedIteratorRangePartitioner
>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>> >> >>
>>>> >> >> Betsy McPhail (1):
>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>> >> >>
>>>> >> >> Bill Hoffman (2):
>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>> >> >> installed.
>>>> >> >>
>>>> >> >> Bill Lorensen (4):
>>>> >> >>      COMP: VTkGlue linker errors
>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>> >> >>      ENH: Bump tag for wiki examples
>>>> >> >>      ENH: Better layout strategy
>>>> >> >>
>>>> >> >> Brad King (3):
>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>>> project
>>>> >> >>
>>>> >> >> Bradley Lowekamp (31):
>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>> construction
>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>> initializer
>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>> >> >>      ENH: Adding initial update script from used libpng version.
>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>> affine
>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>> >> >>      ENH: Update itkpng name mangling
>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>> ReferenceImage
>>>> >> >> ivar
>>>> >> >>      BUG: Increase tolerance for
>>>> PhysicsBasedNonRigidRegistrationMethod
>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>> BSplineScatter
>>>> >> >> change
>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>> >> >> ImageFilterBase
>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>> construction
>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>> ReferenceImage
>>>> >> >> ivar
>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>> MovingHistogram
>>>> >> >> base
>>>> >> >>      COMP: address sign unsigned comparison warning
>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>> >> >>      COMP: Address unused member variable and methods in
>>>> anonymous ns
>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>>>> >> >> range
>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>> >> >>
>>>> >> >> Davis Vigneault (7):
>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>> >> >>      DOC: Expanded TreeContainer Example
>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>> >> >>
>>>> >> >> D?enan Zuki? (1):
>>>> >> >>      STYLE: better formatting of the "usage" message
>>>> >> >>
>>>> >> >> Eugene Prilepin (1):
>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>> >> >>
>>>> >> >> Floris Berendsen (1):
>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>> >> >>
>>>> >> >> Hans Johnson (29):
>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>> >> >>      BUG: FixedParameters should be double precision
>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>> >> >>      COMP: Update to version for WikiExamples
>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>> >> >>      PERF: Remove floating point as sentinal value
>>>> >> >>      COMP: Const correctness needs to be maintained
>>>> >> >>      BUG: Preserve backwards compatibility
>>>> >> >>      DOC: Provide consistent naming in comments
>>>> >> >>      ENH: Conversion between transform type tolerance
>>>> >> >>      STYLE: Prefer initialization to assignment
>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>> >> >>      COMP: Update to version for WikiExamples
>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>> >> >>      BUG: In configuration test need to mirror code
>>>> >> >>
>>>> >> >> Hyun Jae Kang (27):
>>>> >> >>      BUG: Remove std::cout calls from class
>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>> >> >>      BUG: Retrieve the missed wrap file
>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>> file
>>>> >> >> header.
>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>> >> >> libraries
>>>> >> >>      BUG: Fixed older XCode linking error
>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>>>> >> >>      BUG: Remove std::cout calls from class
>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>> file
>>>> >> >> header.
>>>> >> >>      BUG: Fixed older XCode linking error
>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>> autological-compare
>>>> >> >> warning.
>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>> >> >>      COMP: Apply latest version of KWStyle
>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>> function
>>>> >> >>      ENH: Update the Report() function of
>>>> >> >> itkResourceProbesCollectorBase
>>>> >> >>      COMP: Fix data-conversion warning message on itkResourceProbe
>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>> >> >>      COMP: Fix data-conversion warning messages
>>>> >> >>
>>>> >> >> Jon Haitz Legarreta (6):
>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>> >> >>      BUG: Fix compilation issues for
>>>> StatisticsUniqueLabelMapFilterTest
>>>> >> >>      BUG: Fix comparison issues for
>>>> itkStatisticsUniqueLabelMapFilter
>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>> >> >>      ENH: Improve code coverage for
>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>> >> >>
>>>> >> >> Julien Michel (1):
>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>> >> >> WarpImageFilter
>>>> >> >>
>>>> >> >> Junjie Bai (2):
>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>> >> >>      BUG: LabelObject CopyAttribute support different LabelObject
>>>> type
>>>> >> >>
>>>> >> >> KWSys Robot (4):
>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>> >> >>
>>>> >> >> LIBPNG Upstream (2):
>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>> >> >>
>>>> >> >> Laurentiu Nicola (2):
>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>>>> >> >>
>>>> >> >> Luc Hermitte (8):
>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>> >> >>
>>>> >> >> Lucas Gandel (4):
>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>> Module
>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>> >> >>
>>>> >> >> Mathieu Malaterre (1):
>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>> >> >>
>>>> >> >> Matthew McCormick (94):
>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>> itkCMakeConfigurationTest.
>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>> >> >> ImageToVTKImageFilter.
>>>> >> >>      COMP: Add link interface specification for wrapping
>>>> >> >> target_link_libraries.
>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>>> >> >>      COMP: Remove unknown doxygen command in
>>>> AnisotropicDiffusionLBR.
>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>>> 14.04.
>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>> >> >>      ENH: Add better scoping to idx.py.
>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>> >> >>      DOC: Correct spelling of Continuous.
>>>> >> >>      ENH: Add more progress information to IterativeClosestPoint2.
>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>>>> >> >>      COMP: Set CMP0054 to new.
>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>> >> >>      ENH: Allow projects to build against an external module.
>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>> ITKTransformMINC.
>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>> >> >>      ENH: Add wrapping support for building modules externally.
>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>> externally.
>>>> >> >>      ENH: Add Cuberille Remote module.
>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>> >> >>      DOC: Correct spelling of Continuous.
>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it
>>>> gets
>>>> >> >> installed."
>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>> LabelMapTypes"
>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>> advanced.
>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot
>>>> have
>>>> >> >> override.
>>>> >> >>      COMP: Add wrapping for
>>>> AdaptiveHistogramEqualizationImageFilter.
>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>> >> >>      ENH: Remove old KWStyle build script.
>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>>> found.
>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>> WRAPPING_SUBMODULE_ORDER.
>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>> detection.
>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>> expression
>>>> >> >> warning.
>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>>> >> >>      COMP: Set CMP0054 to new.
>>>> >> >>      BUG: Remove unused wrapping files.
>>>> >> >>      BUG: Do install install wrapping development files.
>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>> >> >>      BUG: Fix detection of the gold linker.
>>>> >> >>      BUG: Update Python package installation locations.
>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>> >> >>      BUG: Install itk_minc2.h header.
>>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>> >> >>
>>>> >> >> Michka Popoff (9):
>>>> >> >>      ENH: Update to swig 3.0.7
>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>> wrapping
>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>> >> >> ImageFilterBase
>>>> >> >> module
>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>> wrapping
>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>> >> >>
>>>> >> >> Mikhail Isakov (1):
>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
>>>> image
>>>> >> >>
>>>> >> >> Nick Tustison (5):
>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>> >> >>      ENH: Adding testing for closed loop.
>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>> strategy.
>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>> >> >>
>>>> >> >> Olivier Commowick (3):
>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>> eigen
>>>> >> >> system
>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>>>> pythag
>>>> >> >> from V3P)
>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>> >> >>
>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>> constructor
>>>> >> >> from
>>>> >> >> images.
>>>> >> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
>>>> >> >>
>>>> >> >> Seun Odutola (1):
>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>> renamed
>>>> >> >> check
>>>> >> >> to Check
>>>> >> >>
>>>> >> >> Shawn Waldon (1):
>>>> >> >>      COMP: Set target OS X version in environment for tools using
>>>> >> >> compiler
>>>> >> >>
>>>> >> >> Simon Alexander (1):
>>>> >> >>      BUG: incorrect closest point computation
>>>> >> >>
>>>> >> >> Tobias Wood (2):
>>>> >> >>      BUG: LBFGSB was printing messages even with debug switched
>>>> off.
>>>> >> >>      BUG: Removed an unguarded print statement.
>>>> >> >>
>>>> >> >> Vladimir S. FONOV (9):
>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>> >> >> Transform
>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>> >> >>      COMP: Update MINC CMake code
>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>> >> >>
>>>> >> >> Xiaoxiao Liu (1):
>>>> >> >>      DOC: update email address for xiaoxiao.
>>>> >> >>
>>>> >> >> Zach Williamson (10):
>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>> >> >>      ENH: Consolidate Library Dependencies
>>>> >> >>      COMP: Add a missing link to Review module
>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>> >> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>>>> >> >>      ENH: Use new linking system macros
>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>> directories
>>>> >> >>      COMP: Recover missing dependencies
>>>> >> >>      ENH: use new linking macros in Filtering module
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> >> >> -----------------------------------------------------
>>>> >> >> Errors or omissions? Please fix them here:
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>> >> >> _____________________________________
>>>> >> >> Powered by www.kitware.com
>>>> >> >>
>>>> >> >> Visit other Kitware open-source projects at
>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>> >> >>
>>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>>> >> >> http://www.kitware.com/products/protraining.php
>>>> >> >>
>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>> >> >>
>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>
>>>
>>> _______________________________________________
>>
>>
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>>
>> http://kitware.com/products/protraining.php
>>
>>
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>>
>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>
>>>
>>
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Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From dzenanz at gmail.com  Wed Nov 25 16:05:50 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 25 Nov 2015 16:05:50 -0500
Subject: [ITK] [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
Message-ID: <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>

OK I will work on it for an hour or two now, and I will make a branch and
push it to Gerrit so whoever wants can pick up from there and keep updating
it.

On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
wrote:

> Makes sense.  At this point I am unlikely to have time to look at this
> until Saturday, but have hopes for a few free hours there.
>
> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> Building git master from Nov 23rd with examples and testing enabled I get
>> 14 compile errors in VS2015 debug x64. Should we coordinate our efforts in
>> fixing them?
>>
>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>>
>>> Two of the three failures look like truncation issues (like
>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>
>>> The other (
>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>  is less obvious.
>>>
>>> If I have time this evening I'll try and have a look at these.
>>>
>>> Is your standard test build in 32 bit ?  That might explain the
>>> difference if there are some underlying type assumptions, but not obvious
>>> why 2015 would trigger but not 2013.
>>>
>>>
>>>
>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
>>> wrote:
>>>
>>>> Ah, cool!  Here:
>>>>
>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>
>>>> Could you please look into the test failures?
>>>>
>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>
>>>> Thanks,
>>>> Matt
>>>>
>>>>
>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>> skalexander at gmail.com> wrote:
>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>> SIMON-LAP,
>>>> > (actually 3 as I wasn't sure the config was right on the first one).
>>>> VS2013
>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
>>>> > truncation problem on the resuts.
>>>> >
>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>> matt.mccormick at kitware.com>
>>>> > wrote:
>>>> >>
>>>> >> Hi Simon,
>>>> >>
>>>> >> Thanks for testing.
>>>> >>
>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>> >>
>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>> >>
>>>> >> Are there any different flags? Could you please submit an
>>>> Experimental
>>>> >> build?
>>>> >>
>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>> Submit -C
>>>> >> Release
>>>> >>
>>>> >> from a fresh build tree.
>>>> >>
>>>> >> Thanks,
>>>> >> Matt
>>>> >>
>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>> skalexander at gmail.com>
>>>> >> wrote:
>>>> >> > Looks like a few problems with x64 build on visual studio 2015 -
>>>> do you
>>>> >> > have
>>>> >> > a test machine in this configuration?
>>>> >> >
>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>> matt.mccormick at kitware.com>
>>>> >> > wrote:
>>>> >> >>
>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>> announce
>>>> >> >> that
>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>>> >> >> testing!
>>>> >> >>
>>>> >> >> Please take this opportunity to test the new features in the
>>>> release
>>>> >> >> candidate.
>>>> >> >>
>>>> >> >>
>>>> >> >> To obtain the source code,
>>>> >> >>
>>>> >> >>   git clone http://itk.org/ITK.git
>>>> >> >>  cd ITK
>>>> >> >>  git checkout -q --detach v4.9rc01
>>>> >> >>
>>>> >> >> For more details, please see the Git documentation [1].
>>>> >> >>
>>>> >> >>
>>>> >> >> A few selected highlights for this release:
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * New Remote modules: the Cuberille module for smooth generation
>>>> of
>>>> >> >> meshes
>>>> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
>>>> module
>>>> >> >> improved edge-preserving smoothing.
>>>> >> >> * Build your own ITK module outside the source tree, add
>>>> continuous
>>>> >> >> integration testing on GitHub, and easily add Python wrapping for
>>>> your
>>>> >> >> C++
>>>> >> >> algorithms.
>>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>>> >> >> standard
>>>> >> >> installation
>>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>>> >> >> itk::VariableLengthVector?s
>>>> >> >> * Generate a FlatStructuringElement from an image
>>>> >> >> * Point-set registration with time-varying B-splines
>>>> >> >> * Module dependencies can now be specified as public / private /
>>>> >> >> compile /
>>>> >> >> test
>>>> >> >>
>>>> >> >>
>>>> >> >> Please test the release candidate and share your experiences on
>>>> the
>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>> module
>>>> >> >> dependency specification mechanism may unearth missing
>>>> dependencies for
>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>> command.
>>>> >> >>
>>>> >> >>
>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>> performs
>>>> >> >> on
>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>> with:
>>>> >> >>
>>>> >> >>   mkdir ../ITK-build
>>>> >> >>   cd ../ITK-build
>>>> >> >>   cmake ../ITK
>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>> Submit
>>>> >> >>
>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>> command.
>>>> >> >>
>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>> Testing
>>>> >> >> your own applications against the RC is also appreciated.
>>>> >> >>
>>>> >> >>
>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>> release.
>>>> >> >> We
>>>> >> >> would especially like to recognize the new contributors: Mikhail
>>>> >> >> Isakov,
>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>>>> >> >> Odutola,
>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>> Williamson,
>>>> >> >> Luc
>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>> >> >>
>>>> >> >>
>>>> >> >> The final release is scheduled for mid-December.
>>>> >> >>
>>>> >> >>
>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>> >> >>
>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> >> >> New Features
>>>> >> >> ---------------------
>>>> >> >>
>>>> >> >> Wrapping improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Python 3 supported
>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>> >> >> * NumPy bridge with VisualStudio
>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>> >> >> * Wrapping is now installed into Python?s site-packages directory
>>>> in
>>>> >> >> the
>>>> >> >> ?itk? package
>>>> >> >> * Wrapping package size is decreased
>>>> >> >> * Better package portability on Mac OSX
>>>> >> >>
>>>> >> >>
>>>> >> >> New Remote Modules
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Cuberille
>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>> >> >> * AnisotropicDiffusionLBR
>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>> >> >>    * Web browser reproducibility:
>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>> >> >>
>>>> >> >>
>>>> >> >> Core Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * External Modules can now be developed outside of the ITK source
>>>> tree
>>>> >> >> and
>>>> >> >> on GitHub
>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>> >> >> * New utilities in itk::Math:
>>>> >> >>    * AlmostEquals
>>>> >> >>    * NotAlmostEquals
>>>> >> >>    * ExactlyEquals
>>>> >> >>    * NotExactlyEquals
>>>> >> >> * New itk::NumericTraits
>>>> >> >>    * IsInteger
>>>> >> >>    * IsSigned
>>>> >> >> * Improved C++11 support
>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>> >> >> itk::ResourceProbesCollectorBase
>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>> >> >>
>>>> >> >>
>>>> >> >> Filtering Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Generate a FlatStructuringElement from an image
>>>> >> >> * WarpImageFilter support VectorImage?s
>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath module
>>>> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>>>> >> >> module
>>>> >> >>
>>>> >> >>
>>>> >> >> Registration Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Point-set registration with time-varying B-splines
>>>> >> >>
>>>> >> >>
>>>> >> >> Build Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Module dependencies can now be specified as public / private /
>>>> >> >> compile /
>>>> >> >> test
>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>> >> >> * Option to export all library symbols on Windows:
>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>> >> >> * Expat third party library is now name mangled
>>>> >> >> * Many more modules can be built as shared libraries
>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>> built
>>>> >> >>
>>>> >> >>
>>>> >> >> Performance Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members
>>>> for
>>>> >> >> metaprogramming
>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>> >> >>    * itk::mpl::EnableIf
>>>> >> >>    * itk::mpl::IsBaseOf
>>>> >> >>    * itk::mpl::IsConvertible
>>>> >> >>    * itk::mpl::IsNumber
>>>> >> >>    * itk::mpl::IsSame
>>>> >> >>    * itk::mpl::PromoteType
>>>> >> >> * Image::GetPixel performance improvements
>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>> >> >> * WarpImageFilter performance improvements
>>>> >> >>
>>>> >> >>
>>>> >> >> Documentation Improvements
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
>>>> >> >> * ITK Software Guide improvements
>>>> >> >>    * How to use Python wrapping
>>>> >> >>    * How to create an ITK module
>>>> >> >>    * Improvements to segmentation examples
>>>> >> >>    * Expanded Canny edge detection example
>>>> >> >>    * Expanded tree container example
>>>> >> >>
>>>> >> >>
>>>> >> >> Third Party Library Updates
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * FFTW updated to latest upstream
>>>> >> >> * Build with recent OpenCV 2 and 3
>>>> >> >> * Build with the latest VTK
>>>> >> >> * PNG update to the latest upstream
>>>> >> >> * GDCM updated to the latest upstream
>>>> >> >> * KWSys updated to the latest upstream
>>>> >> >> * MINC updated to the latest upstream
>>>> >> >> * SWIG updated to the latest upstream
>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>> >> >>
>>>> >> >>
>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>> >> >>
>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>>>> >> >>
>>>> >> >>
>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >>
>>>> >> >> * *Lots* of important bug fixes
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >>
>>>> >> >> * And much more! See details in the log below.
>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>> >> >> --------------------------------------------
>>>> >> >>
>>>> >> >>
>>>> >> >> Abhishek Tiwari (1):
>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>> >> >>
>>>> >> >> Adam Snyder (1):
>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>> >> >>
>>>> >> >> Alexander Leinoff (6):
>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>> >> >> itkMath.h
>>>> >> >>      COMP: Removes floating-point equality checks
>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>> Math::AlmostEquals
>>>> >> >>      ENH: Updates fftw dependency
>>>> >> >>
>>>> >> >> Arnaud Gelas (5):
>>>> >> >>      COMP: fix warning (unused local typedef)
>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>> >> >>      DOC: add doxgen documentation for
>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>> >> >>      ENH: add tests to exercise
>>>> itk::ThreadedIteratorRangePartitioner
>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>> >> >>
>>>> >> >> Betsy McPhail (1):
>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>> >> >>
>>>> >> >> Bill Hoffman (2):
>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>> >> >> installed.
>>>> >> >>
>>>> >> >> Bill Lorensen (4):
>>>> >> >>      COMP: VTkGlue linker errors
>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>> >> >>      ENH: Bump tag for wiki examples
>>>> >> >>      ENH: Better layout strategy
>>>> >> >>
>>>> >> >> Brad King (3):
>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>>> project
>>>> >> >>
>>>> >> >> Bradley Lowekamp (31):
>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>> construction
>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>> initializer
>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>> >> >>      ENH: Adding initial update script from used libpng version.
>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>> affine
>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>> >> >>      ENH: Update itkpng name mangling
>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>> ReferenceImage
>>>> >> >> ivar
>>>> >> >>      BUG: Increase tolerance for
>>>> PhysicsBasedNonRigidRegistrationMethod
>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>> BSplineScatter
>>>> >> >> change
>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>> >> >> ImageFilterBase
>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>> construction
>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>> ReferenceImage
>>>> >> >> ivar
>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>> MovingHistogram
>>>> >> >> base
>>>> >> >>      COMP: address sign unsigned comparison warning
>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>> >> >>      COMP: Address unused member variable and methods in
>>>> anonymous ns
>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed Threshold
>>>> >> >> range
>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid test
>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>> >> >>
>>>> >> >> Davis Vigneault (7):
>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>> >> >>      DOC: Expanded TreeContainer Example
>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with c++11
>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>> >> >>
>>>> >> >> D?enan Zuki? (1):
>>>> >> >>      STYLE: better formatting of the "usage" message
>>>> >> >>
>>>> >> >> Eugene Prilepin (1):
>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>> >> >>
>>>> >> >> Floris Berendsen (1):
>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>> >> >>
>>>> >> >> Hans Johnson (29):
>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>> >> >>      BUG: FixedParameters should be double precision
>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>> >> >>      COMP: Update to version for WikiExamples
>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>> >> >>      PERF: Remove floating point as sentinal value
>>>> >> >>      COMP: Const correctness needs to be maintained
>>>> >> >>      BUG: Preserve backwards compatibility
>>>> >> >>      DOC: Provide consistent naming in comments
>>>> >> >>      ENH: Conversion between transform type tolerance
>>>> >> >>      STYLE: Prefer initialization to assignment
>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>> >> >>      COMP: Update to version for WikiExamples
>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>> >> >>      BUG: In configuration test need to mirror code
>>>> >> >>
>>>> >> >> Hyun Jae Kang (27):
>>>> >> >>      BUG: Remove std::cout calls from class
>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>> >> >>      BUG: Retrieve the missed wrap file
>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>> file
>>>> >> >> header.
>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>> >> >> libraries
>>>> >> >>      BUG: Fixed older XCode linking error
>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>>>> >> >>      BUG: Remove std::cout calls from class
>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>> file
>>>> >> >> header.
>>>> >> >>      BUG: Fixed older XCode linking error
>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>> autological-compare
>>>> >> >> warning.
>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>> >> >>      COMP: Apply latest version of KWStyle
>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>> function
>>>> >> >>      ENH: Update the Report() function of
>>>> >> >> itkResourceProbesCollectorBase
>>>> >> >>      COMP: Fix data-conversion warning message on itkResourceProbe
>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>> >> >>      COMP: Fix data-conversion warning messages
>>>> >> >>
>>>> >> >> Jon Haitz Legarreta (6):
>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>> >> >>      BUG: Fix compilation issues for
>>>> StatisticsUniqueLabelMapFilterTest
>>>> >> >>      BUG: Fix comparison issues for
>>>> itkStatisticsUniqueLabelMapFilter
>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>> >> >>      ENH: Improve code coverage for
>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>> >> >>
>>>> >> >> Julien Michel (1):
>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>> >> >> WarpImageFilter
>>>> >> >>
>>>> >> >> Junjie Bai (2):
>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>> >> >>      BUG: LabelObject CopyAttribute support different LabelObject
>>>> type
>>>> >> >>
>>>> >> >> KWSys Robot (4):
>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>> >> >>
>>>> >> >> LIBPNG Upstream (2):
>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>> >> >>
>>>> >> >> Laurentiu Nicola (2):
>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>>>> >> >>
>>>> >> >> Luc Hermitte (8):
>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors 1/...
>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>> >> >>
>>>> >> >> Lucas Gandel (4):
>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath module.
>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>> Module
>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>> >> >>
>>>> >> >> Mathieu Malaterre (1):
>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>> >> >>
>>>> >> >> Matthew McCormick (94):
>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>> itkCMakeConfigurationTest.
>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>> >> >> ImageToVTKImageFilter.
>>>> >> >>      COMP: Add link interface specification for wrapping
>>>> >> >> target_link_libraries.
>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>>> >> >>      COMP: Remove unknown doxygen command in
>>>> AnisotropicDiffusionLBR.
>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>>> 14.04.
>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>> >> >>      ENH: Add better scoping to idx.py.
>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>> >> >>      DOC: Correct spelling of Continuous.
>>>> >> >>      ENH: Add more progress information to IterativeClosestPoint2.
>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>>>> >> >>      COMP: Set CMP0054 to new.
>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>> >> >>      ENH: Allow projects to build against an external module.
>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>> ITKTransformMINC.
>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>> >> >>      ENH: Add wrapping support for building modules externally.
>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>> externally.
>>>> >> >>      ENH: Add Cuberille Remote module.
>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>> >> >>      DOC: Correct spelling of Continuous.
>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it
>>>> gets
>>>> >> >> installed."
>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>> LabelMapTypes"
>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>> advanced.
>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot
>>>> have
>>>> >> >> override.
>>>> >> >>      COMP: Add wrapping for
>>>> AdaptiveHistogramEqualizationImageFilter.
>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>> >> >>      ENH: Remove old KWStyle build script.
>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>>> found.
>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>> WRAPPING_SUBMODULE_ORDER.
>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>> detection.
>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>> expression
>>>> >> >> warning.
>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>>> >> >>      COMP: Set CMP0054 to new.
>>>> >> >>      BUG: Remove unused wrapping files.
>>>> >> >>      BUG: Do install install wrapping development files.
>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>> >> >>      BUG: Fix detection of the gold linker.
>>>> >> >>      BUG: Update Python package installation locations.
>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>> >> >>      BUG: Install itk_minc2.h header.
>>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>> >> >>
>>>> >> >> Michka Popoff (9):
>>>> >> >>      ENH: Update to swig 3.0.7
>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the sys.path
>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>> wrapping
>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>> >> >> ImageFilterBase
>>>> >> >> module
>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>> wrapping
>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>> >> >>
>>>> >> >> Mikhail Isakov (1):
>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no baseline
>>>> image
>>>> >> >>
>>>> >> >> Nick Tustison (5):
>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>> >> >>      ENH: Adding testing for closed loop.
>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>> strategy.
>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>> >> >>
>>>> >> >> Olivier Commowick (3):
>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>> eigen
>>>> >> >> system
>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>>>> pythag
>>>> >> >> from V3P)
>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>> >> >>
>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>> constructor
>>>> >> >> from
>>>> >> >> images.
>>>> >> >>      COMP: Fix test errors and warnings in FlatStructuringElement.
>>>> >> >>
>>>> >> >> Seun Odutola (1):
>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>> renamed
>>>> >> >> check
>>>> >> >> to Check
>>>> >> >>
>>>> >> >> Shawn Waldon (1):
>>>> >> >>      COMP: Set target OS X version in environment for tools using
>>>> >> >> compiler
>>>> >> >>
>>>> >> >> Simon Alexander (1):
>>>> >> >>      BUG: incorrect closest point computation
>>>> >> >>
>>>> >> >> Tobias Wood (2):
>>>> >> >>      BUG: LBFGSB was printing messages even with debug switched
>>>> off.
>>>> >> >>      BUG: Removed an unguarded print statement.
>>>> >> >>
>>>> >> >> Vladimir S. FONOV (9):
>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>> >> >> Transform
>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>> >> >>      COMP: Update MINC CMake code
>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>> >> >>
>>>> >> >> Xiaoxiao Liu (1):
>>>> >> >>      DOC: update email address for xiaoxiao.
>>>> >> >>
>>>> >> >> Zach Williamson (10):
>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>> >> >>      ENH: Consolidate Library Dependencies
>>>> >> >>      COMP: Add a missing link to Review module
>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>> >> >>      COMP: Fix inconsistant naming of GPUPDEDeformableRegistration
>>>> >> >>      ENH: Use new linking system macros
>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>> directories
>>>> >> >>      COMP: Recover missing dependencies
>>>> >> >>      ENH: use new linking macros in Filtering module
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> >> >> -----------------------------------------------------
>>>> >> >> Errors or omissions? Please fix them here:
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> >> >>
>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>> >> >> _____________________________________
>>>> >> >> Powered by www.kitware.com
>>>> >> >>
>>>> >> >> Visit other Kitware open-source projects at
>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>> >> >>
>>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>>> >> >> http://www.kitware.com/products/protraining.php
>>>> >> >>
>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>> >> >>
>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>
>>>
>>> _______________________________________________
>>
>>
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>>
>> http://kitware.com/products/protraining.php
>>
>>
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>>
>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>
>>>
>>
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From skalexander at gmail.com  Wed Nov 25 16:08:18 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Wed, 25 Nov 2015 21:08:18 +0000
Subject: [ITK] [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
 <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
Message-ID: <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>

Perfect.  I'm under a deadline that is likely to eat the rest of the week
but if that clears up I'll try and jump in earlier.

On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:

> OK I will work on it for an hour or two now, and I will make a branch and
> push it to Gerrit so whoever wants can pick up from there and keep updating
> it.
>
> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Makes sense.  At this point I am unlikely to have time to look at this
>> until Saturday, but have hopes for a few free hours there.
>>
>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> Building git master from Nov 23rd with examples and testing enabled I
>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>> in fixing them?
>>>
>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com
>>> > wrote:
>>>
>>>> Two of the three failures look like truncation issues (like
>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>
>>>> The other (
>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>  is less obvious.
>>>>
>>>> If I have time this evening I'll try and have a look at these.
>>>>
>>>> Is your standard test build in 32 bit ?  That might explain the
>>>> difference if there are some underlying type assumptions, but not obvious
>>>> why 2015 would trigger but not 2013.
>>>>
>>>>
>>>>
>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
>>>> wrote:
>>>>
>>>>> Ah, cool!  Here:
>>>>>
>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>
>>>>> Could you please look into the test failures?
>>>>>
>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>
>>>>> Thanks,
>>>>> Matt
>>>>>
>>>>>
>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>> skalexander at gmail.com> wrote:
>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>> SIMON-LAP,
>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>> one).  VS2013
>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
>>>>> > truncation problem on the resuts.
>>>>> >
>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>> matt.mccormick at kitware.com>
>>>>> > wrote:
>>>>> >>
>>>>> >> Hi Simon,
>>>>> >>
>>>>> >> Thanks for testing.
>>>>> >>
>>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>>> >>
>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>> >>
>>>>> >> Are there any different flags? Could you please submit an
>>>>> Experimental
>>>>> >> build?
>>>>> >>
>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>> Submit -C
>>>>> >> Release
>>>>> >>
>>>>> >> from a fresh build tree.
>>>>> >>
>>>>> >> Thanks,
>>>>> >> Matt
>>>>> >>
>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>> skalexander at gmail.com>
>>>>> >> wrote:
>>>>> >> > Looks like a few problems with x64 build on visual studio 2015 -
>>>>> do you
>>>>> >> > have
>>>>> >> > a test machine in this configuration?
>>>>> >> >
>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>> matt.mccormick at kitware.com>
>>>>> >> > wrote:
>>>>> >> >>
>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>> announce
>>>>> >> >> that
>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>>>> >> >> testing!
>>>>> >> >>
>>>>> >> >> Please take this opportunity to test the new features in the
>>>>> release
>>>>> >> >> candidate.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> To obtain the source code,
>>>>> >> >>
>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>> >> >>  cd ITK
>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>> >> >>
>>>>> >> >> For more details, please see the Git documentation [1].
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> A few selected highlights for this release:
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * New Remote modules: the Cuberille module for smooth generation
>>>>> of
>>>>> >> >> meshes
>>>>> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
>>>>> module
>>>>> >> >> improved edge-preserving smoothing.
>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>> continuous
>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>> for your
>>>>> >> >> C++
>>>>> >> >> algorithms.
>>>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>>>> >> >> standard
>>>>> >> >> installation
>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>>>> >> >> itk::VariableLengthVector?s
>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>> >> >> compile /
>>>>> >> >> test
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Please test the release candidate and share your experiences on
>>>>> the
>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>> module
>>>>> >> >> dependency specification mechanism may unearth missing
>>>>> dependencies for
>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>> command.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>> performs
>>>>> >> >> on
>>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>>> with:
>>>>> >> >>
>>>>> >> >>   mkdir ../ITK-build
>>>>> >> >>   cd ../ITK-build
>>>>> >> >>   cmake ../ITK
>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>> Submit
>>>>> >> >>
>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>> command.
>>>>> >> >>
>>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>>> Testing
>>>>> >> >> your own applications against the RC is also appreciated.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>> release.
>>>>> >> >> We
>>>>> >> >> would especially like to recognize the new contributors: Mikhail
>>>>> >> >> Isakov,
>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>>>>> >> >> Odutola,
>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>> Williamson,
>>>>> >> >> Luc
>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> The final release is scheduled for mid-December.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>> >> >>
>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> New Features
>>>>> >> >> ---------------------
>>>>> >> >>
>>>>> >> >> Wrapping improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Python 3 supported
>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>> >> >> * NumPy bridge with VisualStudio
>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>> directory in
>>>>> >> >> the
>>>>> >> >> ?itk? package
>>>>> >> >> * Wrapping package size is decreased
>>>>> >> >> * Better package portability on Mac OSX
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> New Remote Modules
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Cuberille
>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>>> >> >> * AnisotropicDiffusionLBR
>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>>> >> >>    * Web browser reproducibility:
>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Core Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>> source tree
>>>>> >> >> and
>>>>> >> >> on GitHub
>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>> >> >> * New utilities in itk::Math:
>>>>> >> >>    * AlmostEquals
>>>>> >> >>    * NotAlmostEquals
>>>>> >> >>    * ExactlyEquals
>>>>> >> >>    * NotExactlyEquals
>>>>> >> >> * New itk::NumericTraits
>>>>> >> >>    * IsInteger
>>>>> >> >>    * IsSigned
>>>>> >> >> * Improved C++11 support
>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Filtering Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>> module
>>>>> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>>>>> >> >> module
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Registration Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Build Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>> >> >> compile /
>>>>> >> >> test
>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>> >> >> * Option to export all library symbols on Windows:
>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>> >> >> * Expat third party library is now name mangled
>>>>> >> >> * Many more modules can be built as shared libraries
>>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>>> built
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Performance Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members
>>>>> for
>>>>> >> >> metaprogramming
>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>> >> >>    * itk::mpl::EnableIf
>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>> >> >>    * itk::mpl::IsConvertible
>>>>> >> >>    * itk::mpl::IsNumber
>>>>> >> >>    * itk::mpl::IsSame
>>>>> >> >>    * itk::mpl::PromoteType
>>>>> >> >> * Image::GetPixel performance improvements
>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>> >> >> * WarpImageFilter performance improvements
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Documentation Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>> Examples
>>>>> >> >> * ITK Software Guide improvements
>>>>> >> >>    * How to use Python wrapping
>>>>> >> >>    * How to create an ITK module
>>>>> >> >>    * Improvements to segmentation examples
>>>>> >> >>    * Expanded Canny edge detection example
>>>>> >> >>    * Expanded tree container example
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Third Party Library Updates
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * FFTW updated to latest upstream
>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>> >> >> * Build with the latest VTK
>>>>> >> >> * PNG update to the latest upstream
>>>>> >> >> * GDCM updated to the latest upstream
>>>>> >> >> * KWSys updated to the latest upstream
>>>>> >> >> * MINC updated to the latest upstream
>>>>> >> >> * SWIG updated to the latest upstream
>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>>> >> >>
>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> * *Lots* of important bug fixes
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> * And much more! See details in the log below.
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>> >> >> --------------------------------------------
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Abhishek Tiwari (1):
>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>> >> >>
>>>>> >> >> Adam Snyder (1):
>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>> >> >>
>>>>> >> >> Alexander Leinoff (6):
>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>> >> >> itkMath.h
>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>> Math::AlmostEquals
>>>>> >> >>      ENH: Updates fftw dependency
>>>>> >> >>
>>>>> >> >> Arnaud Gelas (5):
>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>> >> >>      DOC: add doxgen documentation for
>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>> >> >>      ENH: add tests to exercise
>>>>> itk::ThreadedIteratorRangePartitioner
>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>> >> >>
>>>>> >> >> Betsy McPhail (1):
>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>> >> >>
>>>>> >> >> Bill Hoffman (2):
>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>> >> >> installed.
>>>>> >> >>
>>>>> >> >> Bill Lorensen (4):
>>>>> >> >>      COMP: VTkGlue linker errors
>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>> >> >>      ENH: Better layout strategy
>>>>> >> >>
>>>>> >> >> Brad King (3):
>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>>>> project
>>>>> >> >>
>>>>> >> >> Bradley Lowekamp (31):
>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>> construction
>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>> initializer
>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>> >> >>      ENH: Adding initial update script from used libpng version.
>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>> affine
>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>> >> >>      ENH: Update itkpng name mangling
>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>> ReferenceImage
>>>>> >> >> ivar
>>>>> >> >>      BUG: Increase tolerance for
>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>> BSplineScatter
>>>>> >> >> change
>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>> >> >> ImageFilterBase
>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>> construction
>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>> ReferenceImage
>>>>> >> >> ivar
>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>> MovingHistogram
>>>>> >> >> base
>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>> anonymous ns
>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>> Threshold
>>>>> >> >> range
>>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>> test
>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>> >> >>
>>>>> >> >> Davis Vigneault (7):
>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>> c++11
>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>> >> >>
>>>>> >> >> D?enan Zuki? (1):
>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>> >> >>
>>>>> >> >> Eugene Prilepin (1):
>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>> >> >>
>>>>> >> >> Floris Berendsen (1):
>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>> >> >>
>>>>> >> >> Hans Johnson (29):
>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>> >> >>
>>>>> >> >> Hyun Jae Kang (27):
>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>>> file
>>>>> >> >> header.
>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>> >> >> libraries
>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>>> file
>>>>> >> >> header.
>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>> autological-compare
>>>>> >> >> warning.
>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>> function
>>>>> >> >>      ENH: Update the Report() function of
>>>>> >> >> itkResourceProbesCollectorBase
>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>> itkResourceProbe
>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>> >> >>
>>>>> >> >> Jon Haitz Legarreta (6):
>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>> >> >>      BUG: Fix compilation issues for
>>>>> StatisticsUniqueLabelMapFilterTest
>>>>> >> >>      BUG: Fix comparison issues for
>>>>> itkStatisticsUniqueLabelMapFilter
>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>> >> >>      ENH: Improve code coverage for
>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>> >> >>
>>>>> >> >> Julien Michel (1):
>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>> >> >> WarpImageFilter
>>>>> >> >>
>>>>> >> >> Junjie Bai (2):
>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>> LabelObject type
>>>>> >> >>
>>>>> >> >> KWSys Robot (4):
>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>> >> >>
>>>>> >> >> LIBPNG Upstream (2):
>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>> >> >>
>>>>> >> >> Laurentiu Nicola (2):
>>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>>>>> >> >>
>>>>> >> >> Luc Hermitte (8):
>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>> 1/...
>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>> >> >>
>>>>> >> >> Lucas Gandel (4):
>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>> module.
>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>> Module
>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>> >> >>
>>>>> >> >> Mathieu Malaterre (1):
>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>> >> >>
>>>>> >> >> Matthew McCormick (94):
>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>> itkCMakeConfigurationTest.
>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>> >> >> ImageToVTKImageFilter.
>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>> >> >> target_link_libraries.
>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>> AnisotropicDiffusionLBR.
>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>>>> 14.04.
>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>> >> >>      ENH: Add more progress information to
>>>>> IterativeClosestPoint2.
>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>> ITKTransformMINC.
>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>> >> >>      ENH: Add wrapping support for building modules externally.
>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>> externally.
>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>> sys.path
>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it
>>>>> gets
>>>>> >> >> installed."
>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>> LabelMapTypes"
>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>> advanced.
>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot
>>>>> have
>>>>> >> >> override.
>>>>> >> >>      COMP: Add wrapping for
>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>>>> found.
>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>> detection.
>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>> expression
>>>>> >> >> warning.
>>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>> >> >>      BUG: Update Python package installation locations.
>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>>> >> >>
>>>>> >> >> Michka Popoff (9):
>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>> sys.path
>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>> wrapping
>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>> >> >> ImageFilterBase
>>>>> >> >> module
>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>> wrapping
>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>> >> >>
>>>>> >> >> Mikhail Isakov (1):
>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>> baseline image
>>>>> >> >>
>>>>> >> >> Nick Tustison (5):
>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>> strategy.
>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>> >> >>
>>>>> >> >> Olivier Commowick (3):
>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>>> eigen
>>>>> >> >> system
>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>>>>> pythag
>>>>> >> >> from V3P)
>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>> >> >>
>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>> constructor
>>>>> >> >> from
>>>>> >> >> images.
>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>> FlatStructuringElement.
>>>>> >> >>
>>>>> >> >> Seun Odutola (1):
>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>> renamed
>>>>> >> >> check
>>>>> >> >> to Check
>>>>> >> >>
>>>>> >> >> Shawn Waldon (1):
>>>>> >> >>      COMP: Set target OS X version in environment for tools using
>>>>> >> >> compiler
>>>>> >> >>
>>>>> >> >> Simon Alexander (1):
>>>>> >> >>      BUG: incorrect closest point computation
>>>>> >> >>
>>>>> >> >> Tobias Wood (2):
>>>>> >> >>      BUG: LBFGSB was printing messages even with debug switched
>>>>> off.
>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>> >> >>
>>>>> >> >> Vladimir S. FONOV (9):
>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>>> >> >> Transform
>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>> >> >>      COMP: Update MINC CMake code
>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>> >> >>
>>>>> >> >> Xiaoxiao Liu (1):
>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>> >> >>
>>>>> >> >> Zach Williamson (10):
>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>> >> >>      COMP: Add a missing link to Review module
>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>> GPUPDEDeformableRegistration
>>>>> >> >>      ENH: Use new linking system macros
>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>> directories
>>>>> >> >>      COMP: Recover missing dependencies
>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> -----------------------------------------------------
>>>>> >> >> Errors or omissions? Please fix them here:
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>> >> >> _____________________________________
>>>>> >> >> Powered by www.kitware.com
>>>>> >> >>
>>>>> >> >> Visit other Kitware open-source projects at
>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>> >> >>
>>>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>> >> >>
>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>> >> >>
>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>
>>>>
>>>> _______________________________________________
>>>
>>>
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>
>>> http://kitware.com/products/protraining.php
>>>
>>>
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>>
>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>
>>>>
>>>
>
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From skalexander at gmail.com  Wed Nov 25 16:08:18 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Wed, 25 Nov 2015 21:08:18 +0000
Subject: [ITK] [ITK-users] [ITK-dev] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
 <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
Message-ID: <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>

Perfect.  I'm under a deadline that is likely to eat the rest of the week
but if that clears up I'll try and jump in earlier.

On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:

> OK I will work on it for an hour or two now, and I will make a branch and
> push it to Gerrit so whoever wants can pick up from there and keep updating
> it.
>
> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Makes sense.  At this point I am unlikely to have time to look at this
>> until Saturday, but have hopes for a few free hours there.
>>
>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> Building git master from Nov 23rd with examples and testing enabled I
>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>> in fixing them?
>>>
>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com
>>> > wrote:
>>>
>>>> Two of the three failures look like truncation issues (like
>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>
>>>> The other (
>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>  is less obvious.
>>>>
>>>> If I have time this evening I'll try and have a look at these.
>>>>
>>>> Is your standard test build in 32 bit ?  That might explain the
>>>> difference if there are some underlying type assumptions, but not obvious
>>>> why 2015 would trigger but not 2013.
>>>>
>>>>
>>>>
>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
>>>> wrote:
>>>>
>>>>> Ah, cool!  Here:
>>>>>
>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>
>>>>> Could you please look into the test failures?
>>>>>
>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>
>>>>> Thanks,
>>>>> Matt
>>>>>
>>>>>
>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>> skalexander at gmail.com> wrote:
>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>> SIMON-LAP,
>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>> one).  VS2013
>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks like a
>>>>> > truncation problem on the resuts.
>>>>> >
>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>> matt.mccormick at kitware.com>
>>>>> > wrote:
>>>>> >>
>>>>> >> Hi Simon,
>>>>> >>
>>>>> >> Thanks for testing.
>>>>> >>
>>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>>> >>
>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>> >>
>>>>> >> Are there any different flags? Could you please submit an
>>>>> Experimental
>>>>> >> build?
>>>>> >>
>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>> Submit -C
>>>>> >> Release
>>>>> >>
>>>>> >> from a fresh build tree.
>>>>> >>
>>>>> >> Thanks,
>>>>> >> Matt
>>>>> >>
>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>> skalexander at gmail.com>
>>>>> >> wrote:
>>>>> >> > Looks like a few problems with x64 build on visual studio 2015 -
>>>>> do you
>>>>> >> > have
>>>>> >> > a test machine in this configuration?
>>>>> >> >
>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>> matt.mccormick at kitware.com>
>>>>> >> > wrote:
>>>>> >> >>
>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>> announce
>>>>> >> >> that
>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>>>> >> >> testing!
>>>>> >> >>
>>>>> >> >> Please take this opportunity to test the new features in the
>>>>> release
>>>>> >> >> candidate.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> To obtain the source code,
>>>>> >> >>
>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>> >> >>  cd ITK
>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>> >> >>
>>>>> >> >> For more details, please see the Git documentation [1].
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> A few selected highlights for this release:
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * New Remote modules: the Cuberille module for smooth generation
>>>>> of
>>>>> >> >> meshes
>>>>> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
>>>>> module
>>>>> >> >> improved edge-preserving smoothing.
>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>> continuous
>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>> for your
>>>>> >> >> C++
>>>>> >> >> algorithms.
>>>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>>>> >> >> standard
>>>>> >> >> installation
>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>>>> >> >> itk::VariableLengthVector?s
>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>> >> >> compile /
>>>>> >> >> test
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Please test the release candidate and share your experiences on
>>>>> the
>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>> module
>>>>> >> >> dependency specification mechanism may unearth missing
>>>>> dependencies for
>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>> command.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>> performs
>>>>> >> >> on
>>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>>> with:
>>>>> >> >>
>>>>> >> >>   mkdir ../ITK-build
>>>>> >> >>   cd ../ITK-build
>>>>> >> >>   cmake ../ITK
>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>> Submit
>>>>> >> >>
>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>> command.
>>>>> >> >>
>>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>>> Testing
>>>>> >> >> your own applications against the RC is also appreciated.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>> release.
>>>>> >> >> We
>>>>> >> >> would especially like to recognize the new contributors: Mikhail
>>>>> >> >> Isakov,
>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>>>>> >> >> Odutola,
>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>> Williamson,
>>>>> >> >> Luc
>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> The final release is scheduled for mid-December.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>> >> >>
>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> New Features
>>>>> >> >> ---------------------
>>>>> >> >>
>>>>> >> >> Wrapping improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Python 3 supported
>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>> >> >> * NumPy bridge with VisualStudio
>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>> directory in
>>>>> >> >> the
>>>>> >> >> ?itk? package
>>>>> >> >> * Wrapping package size is decreased
>>>>> >> >> * Better package portability on Mac OSX
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> New Remote Modules
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Cuberille
>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>>> >> >> * AnisotropicDiffusionLBR
>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>>> >> >>    * Web browser reproducibility:
>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Core Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>> source tree
>>>>> >> >> and
>>>>> >> >> on GitHub
>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>> >> >> * New utilities in itk::Math:
>>>>> >> >>    * AlmostEquals
>>>>> >> >>    * NotAlmostEquals
>>>>> >> >>    * ExactlyEquals
>>>>> >> >>    * NotExactlyEquals
>>>>> >> >> * New itk::NumericTraits
>>>>> >> >>    * IsInteger
>>>>> >> >>    * IsSigned
>>>>> >> >> * Improved C++11 support
>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Filtering Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>> module
>>>>> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>>>>> >> >> module
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Registration Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Build Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>> >> >> compile /
>>>>> >> >> test
>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>> >> >> * Option to export all library symbols on Windows:
>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>> >> >> * Expat third party library is now name mangled
>>>>> >> >> * Many more modules can be built as shared libraries
>>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>>> built
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Performance Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members
>>>>> for
>>>>> >> >> metaprogramming
>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>> >> >>    * itk::mpl::EnableIf
>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>> >> >>    * itk::mpl::IsConvertible
>>>>> >> >>    * itk::mpl::IsNumber
>>>>> >> >>    * itk::mpl::IsSame
>>>>> >> >>    * itk::mpl::PromoteType
>>>>> >> >> * Image::GetPixel performance improvements
>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>> >> >> * WarpImageFilter performance improvements
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Documentation Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>> Examples
>>>>> >> >> * ITK Software Guide improvements
>>>>> >> >>    * How to use Python wrapping
>>>>> >> >>    * How to create an ITK module
>>>>> >> >>    * Improvements to segmentation examples
>>>>> >> >>    * Expanded Canny edge detection example
>>>>> >> >>    * Expanded tree container example
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Third Party Library Updates
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * FFTW updated to latest upstream
>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>> >> >> * Build with the latest VTK
>>>>> >> >> * PNG update to the latest upstream
>>>>> >> >> * GDCM updated to the latest upstream
>>>>> >> >> * KWSys updated to the latest upstream
>>>>> >> >> * MINC updated to the latest upstream
>>>>> >> >> * SWIG updated to the latest upstream
>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>>> >> >>
>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> * *Lots* of important bug fixes
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> * And much more! See details in the log below.
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>> >> >> --------------------------------------------
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Abhishek Tiwari (1):
>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>> >> >>
>>>>> >> >> Adam Snyder (1):
>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>> >> >>
>>>>> >> >> Alexander Leinoff (6):
>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>> >> >> itkMath.h
>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>> Math::AlmostEquals
>>>>> >> >>      ENH: Updates fftw dependency
>>>>> >> >>
>>>>> >> >> Arnaud Gelas (5):
>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>> >> >>      DOC: add doxgen documentation for
>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>> >> >>      ENH: add tests to exercise
>>>>> itk::ThreadedIteratorRangePartitioner
>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>> >> >>
>>>>> >> >> Betsy McPhail (1):
>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>> >> >>
>>>>> >> >> Bill Hoffman (2):
>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>> >> >> installed.
>>>>> >> >>
>>>>> >> >> Bill Lorensen (4):
>>>>> >> >>      COMP: VTkGlue linker errors
>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>> >> >>      ENH: Better layout strategy
>>>>> >> >>
>>>>> >> >> Brad King (3):
>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>>>> project
>>>>> >> >>
>>>>> >> >> Bradley Lowekamp (31):
>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>> construction
>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>> initializer
>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>> >> >>      ENH: Adding initial update script from used libpng version.
>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>> affine
>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>> >> >>      ENH: Update itkpng name mangling
>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>> ReferenceImage
>>>>> >> >> ivar
>>>>> >> >>      BUG: Increase tolerance for
>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>> BSplineScatter
>>>>> >> >> change
>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>> >> >> ImageFilterBase
>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>> construction
>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>> ReferenceImage
>>>>> >> >> ivar
>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>> MovingHistogram
>>>>> >> >> base
>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>> anonymous ns
>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>> Threshold
>>>>> >> >> range
>>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>> test
>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>> >> >>
>>>>> >> >> Davis Vigneault (7):
>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>> c++11
>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>> >> >>
>>>>> >> >> D?enan Zuki? (1):
>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>> >> >>
>>>>> >> >> Eugene Prilepin (1):
>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>> >> >>
>>>>> >> >> Floris Berendsen (1):
>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>> >> >>
>>>>> >> >> Hans Johnson (29):
>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>> >> >>
>>>>> >> >> Hyun Jae Kang (27):
>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>>> file
>>>>> >> >> header.
>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>> >> >> libraries
>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS X
>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>>> file
>>>>> >> >> header.
>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>> autological-compare
>>>>> >> >> warning.
>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>> function
>>>>> >> >>      ENH: Update the Report() function of
>>>>> >> >> itkResourceProbesCollectorBase
>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>> itkResourceProbe
>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>> >> >>
>>>>> >> >> Jon Haitz Legarreta (6):
>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>> >> >>      BUG: Fix compilation issues for
>>>>> StatisticsUniqueLabelMapFilterTest
>>>>> >> >>      BUG: Fix comparison issues for
>>>>> itkStatisticsUniqueLabelMapFilter
>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>> >> >>      ENH: Improve code coverage for
>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>> >> >>
>>>>> >> >> Julien Michel (1):
>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>> >> >> WarpImageFilter
>>>>> >> >>
>>>>> >> >> Junjie Bai (2):
>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>> LabelObject type
>>>>> >> >>
>>>>> >> >> KWSys Robot (4):
>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>> >> >>
>>>>> >> >> LIBPNG Upstream (2):
>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>> >> >>
>>>>> >> >> Laurentiu Nicola (2):
>>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>>>>> >> >>
>>>>> >> >> Luc Hermitte (8):
>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>> 1/...
>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>> >> >>
>>>>> >> >> Lucas Gandel (4):
>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>> module.
>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>> Module
>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>> >> >>
>>>>> >> >> Mathieu Malaterre (1):
>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>> >> >>
>>>>> >> >> Matthew McCormick (94):
>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>> itkCMakeConfigurationTest.
>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>> >> >> ImageToVTKImageFilter.
>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>> >> >> target_link_libraries.
>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>> AnisotropicDiffusionLBR.
>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>>>> 14.04.
>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>> >> >>      ENH: Add more progress information to
>>>>> IterativeClosestPoint2.
>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>> >> >>      BUG: ContinuousIndex should not be templated over TCoordRep.
>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>> ITKTransformMINC.
>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>> >> >>      ENH: Add wrapping support for building modules externally.
>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>> externally.
>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>> sys.path
>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so it
>>>>> gets
>>>>> >> >> installed."
>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>> LabelMapTypes"
>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>> advanced.
>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap cannot
>>>>> have
>>>>> >> >> override.
>>>>> >> >>      COMP: Add wrapping for
>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>> >> >>      ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>>>> found.
>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>> detection.
>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>> expression
>>>>> >> >> warning.
>>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>> >> >>      BUG: Update Python package installation locations.
>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>>> >> >>
>>>>> >> >> Michka Popoff (9):
>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>> sys.path
>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>> wrapping
>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>> >> >> ImageFilterBase
>>>>> >> >> module
>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>> wrapping
>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>> >> >>
>>>>> >> >> Mikhail Isakov (1):
>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>> baseline image
>>>>> >> >>
>>>>> >> >> Nick Tustison (5):
>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>> strategy.
>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>> >> >>
>>>>> >> >> Olivier Commowick (3):
>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>>> eigen
>>>>> >> >> system
>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>>>>> pythag
>>>>> >> >> from V3P)
>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>> >> >>
>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>> constructor
>>>>> >> >> from
>>>>> >> >> images.
>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>> FlatStructuringElement.
>>>>> >> >>
>>>>> >> >> Seun Odutola (1):
>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>> renamed
>>>>> >> >> check
>>>>> >> >> to Check
>>>>> >> >>
>>>>> >> >> Shawn Waldon (1):
>>>>> >> >>      COMP: Set target OS X version in environment for tools using
>>>>> >> >> compiler
>>>>> >> >>
>>>>> >> >> Simon Alexander (1):
>>>>> >> >>      BUG: incorrect closest point computation
>>>>> >> >>
>>>>> >> >> Tobias Wood (2):
>>>>> >> >>      BUG: LBFGSB was printing messages even with debug switched
>>>>> off.
>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>> >> >>
>>>>> >> >> Vladimir S. FONOV (9):
>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>>> >> >> Transform
>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>> >> >>      COMP: Update MINC CMake code
>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>> >> >>
>>>>> >> >> Xiaoxiao Liu (1):
>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>> >> >>
>>>>> >> >> Zach Williamson (10):
>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>> >> >>      COMP: Add a missing link to Review module
>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>> GPUPDEDeformableRegistration
>>>>> >> >>      ENH: Use new linking system macros
>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>> directories
>>>>> >> >>      COMP: Recover missing dependencies
>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> -----------------------------------------------------
>>>>> >> >> Errors or omissions? Please fix them here:
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>> >> >> _____________________________________
>>>>> >> >> Powered by www.kitware.com
>>>>> >> >>
>>>>> >> >> Visit other Kitware open-source projects at
>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>> >> >>
>>>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>> >> >>
>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>> >> >>
>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>
>>>>
>>>> _______________________________________________
>>>
>>>
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>
>>> http://kitware.com/products/protraining.php
>>>
>>>
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>>
>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>
>>>>
>>>
>
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Powered by www.kitware.com

Visit other Kitware open-source projects at
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Kitware offers ITK Training Courses, for more information visit:
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From dzenanz at gmail.com  Wed Nov 25 16:40:46 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 25 Nov 2015 16:40:46 -0500
Subject: [ITK] [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
 <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
 <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>
Message-ID: <CAPf2UMSqrPnbJfaVZ-Nsw=m0iw8rnPENLsD0x588ekJ7wHG7yw@mail.gmail.com>

It turns out that all the compile errors were occurring in WikiExamples. I
solved all except one:
ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
23, but it should be judging from the comment on that line.

For the rest, I created a pull request:
https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3

On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com>
wrote:

> Perfect.  I'm under a deadline that is likely to eat the rest of the week
> but if that clears up I'll try and jump in earlier.
>
> On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> OK I will work on it for an hour or two now, and I will make a branch and
>> push it to Gerrit so whoever wants can pick up from there and keep updating
>> it.
>>
>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>>
>>> Makes sense.  At this point I am unlikely to have time to look at this
>>> until Saturday, but have hopes for a few free hours there.
>>>
>>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> Building git master from Nov 23rd with examples and testing enabled I
>>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>>> in fixing them?
>>>>
>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>> skalexander at gmail.com> wrote:
>>>>
>>>>> Two of the three failures look like truncation issues (like
>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>>
>>>>> The other (
>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>>  is less obvious.
>>>>>
>>>>> If I have time this evening I'll try and have a look at these.
>>>>>
>>>>> Is your standard test build in 32 bit ?  That might explain the
>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>> why 2015 would trigger but not 2013.
>>>>>
>>>>>
>>>>>
>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>> matt.mccormick at kitware.com> wrote:
>>>>>
>>>>>> Ah, cool!  Here:
>>>>>>
>>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>
>>>>>> Could you please look into the test failures?
>>>>>>
>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>
>>>>>> Thanks,
>>>>>> Matt
>>>>>>
>>>>>>
>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>> skalexander at gmail.com> wrote:
>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>>> SIMON-LAP,
>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>> one).  VS2013
>>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks like
>>>>>> a
>>>>>> > truncation problem on the resuts.
>>>>>> >
>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>> matt.mccormick at kitware.com>
>>>>>> > wrote:
>>>>>> >>
>>>>>> >> Hi Simon,
>>>>>> >>
>>>>>> >> Thanks for testing.
>>>>>> >>
>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>>>> >>
>>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>> >>
>>>>>> >> Are there any different flags? Could you please submit an
>>>>>> Experimental
>>>>>> >> build?
>>>>>> >>
>>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>> Submit -C
>>>>>> >> Release
>>>>>> >>
>>>>>> >> from a fresh build tree.
>>>>>> >>
>>>>>> >> Thanks,
>>>>>> >> Matt
>>>>>> >>
>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>> skalexander at gmail.com>
>>>>>> >> wrote:
>>>>>> >> > Looks like a few problems with x64 build on visual studio 2015 -
>>>>>> do you
>>>>>> >> > have
>>>>>> >> > a test machine in this configuration?
>>>>>> >> >
>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>> matt.mccormick at kitware.com>
>>>>>> >> > wrote:
>>>>>> >> >>
>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>>> announce
>>>>>> >> >> that
>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>>>>> >> >> testing!
>>>>>> >> >>
>>>>>> >> >> Please take this opportunity to test the new features in the
>>>>>> release
>>>>>> >> >> candidate.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> To obtain the source code,
>>>>>> >> >>
>>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>>> >> >>  cd ITK
>>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>>> >> >>
>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> A few selected highlights for this release:
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>> generation of
>>>>>> >> >> meshes
>>>>>> >> >> from binary segmentation images, and the
>>>>>> AnisotropicDiffusionLBR module
>>>>>> >> >> improved edge-preserving smoothing.
>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>> continuous
>>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>>> for your
>>>>>> >> >> C++
>>>>>> >> >> algorithms.
>>>>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>>>>> >> >> standard
>>>>>> >> >> installation
>>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>>>>> >> >> itk::VariableLengthVector?s
>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>>> >> >> compile /
>>>>>> >> >> test
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Please test the release candidate and share your experiences on
>>>>>> the
>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>>> module
>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>> dependencies for
>>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>>> command.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>>> performs
>>>>>> >> >> on
>>>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>>>> with:
>>>>>> >> >>
>>>>>> >> >>   mkdir ../ITK-build
>>>>>> >> >>   cd ../ITK-build
>>>>>> >> >>   cmake ../ITK
>>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>> Submit
>>>>>> >> >>
>>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>>> command.
>>>>>> >> >>
>>>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>>>> Testing
>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>>> release.
>>>>>> >> >> We
>>>>>> >> >> would especially like to recognize the new contributors: Mikhail
>>>>>> >> >> Isakov,
>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood,
>>>>>> Seun
>>>>>> >> >> Odutola,
>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>> Williamson,
>>>>>> >> >> Luc
>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>> >> >>
>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> New Features
>>>>>> >> >> ---------------------
>>>>>> >> >>
>>>>>> >> >> Wrapping improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Python 3 supported
>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>>> directory in
>>>>>> >> >> the
>>>>>> >> >> ?itk? package
>>>>>> >> >> * Wrapping package size is decreased
>>>>>> >> >> * Better package portability on Mac OSX
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> New Remote Modules
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Cuberille
>>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>>>> >> >>    * Web browser reproducibility:
>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Core Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>> source tree
>>>>>> >> >> and
>>>>>> >> >> on GitHub
>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>>> >> >> * New utilities in itk::Math:
>>>>>> >> >>    * AlmostEquals
>>>>>> >> >>    * NotAlmostEquals
>>>>>> >> >>    * ExactlyEquals
>>>>>> >> >>    * NotExactlyEquals
>>>>>> >> >> * New itk::NumericTraits
>>>>>> >> >>    * IsInteger
>>>>>> >> >>    * IsSigned
>>>>>> >> >> * Improved C++11 support
>>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Filtering Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>>> module
>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>> ITKImageFilterBase
>>>>>> >> >> module
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Registration Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Build Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>>> >> >> compile /
>>>>>> >> >> test
>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>>> >> >> * Expat third party library is now name mangled
>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>>>> built
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Performance Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members
>>>>>> for
>>>>>> >> >> metaprogramming
>>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>>> >> >>    * itk::mpl::EnableIf
>>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>>> >> >>    * itk::mpl::IsConvertible
>>>>>> >> >>    * itk::mpl::IsNumber
>>>>>> >> >>    * itk::mpl::IsSame
>>>>>> >> >>    * itk::mpl::PromoteType
>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Documentation Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>> Examples
>>>>>> >> >> * ITK Software Guide improvements
>>>>>> >> >>    * How to use Python wrapping
>>>>>> >> >>    * How to create an ITK module
>>>>>> >> >>    * Improvements to segmentation examples
>>>>>> >> >>    * Expanded Canny edge detection example
>>>>>> >> >>    * Expanded tree container example
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Third Party Library Updates
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * FFTW updated to latest upstream
>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>> >> >> * Build with the latest VTK
>>>>>> >> >> * PNG update to the latest upstream
>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>> >> >> * MINC updated to the latest upstream
>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>>>> >> >>
>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Private copy constructors and operator= use
>>>>>> ITK_DELETE_FUNCTION
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> * *Lots* of important bug fixes
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> * And much more! See details in the log below.
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>> >> >> --------------------------------------------
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Abhishek Tiwari (1):
>>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>>> >> >>
>>>>>> >> >> Adam Snyder (1):
>>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>>> >> >>
>>>>>> >> >> Alexander Leinoff (6):
>>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>>> >> >> itkMath.h
>>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>>> Math::AlmostEquals
>>>>>> >> >>      ENH: Updates fftw dependency
>>>>>> >> >>
>>>>>> >> >> Arnaud Gelas (5):
>>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>> >> >>      DOC: add doxgen documentation for
>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>> >> >>      ENH: add tests to exercise
>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>> >> >>
>>>>>> >> >> Betsy McPhail (1):
>>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>>> >> >>
>>>>>> >> >> Bill Hoffman (2):
>>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>>> >> >> installed.
>>>>>> >> >>
>>>>>> >> >> Bill Lorensen (4):
>>>>>> >> >>      COMP: VTkGlue linker errors
>>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>>> >> >>      ENH: Better layout strategy
>>>>>> >> >>
>>>>>> >> >> Brad King (3):
>>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>>>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>>>>> project
>>>>>> >> >>
>>>>>> >> >> Bradley Lowekamp (31):
>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>> construction
>>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>>> initializer
>>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>>> >> >>      ENH: Adding initial update script from used libpng version.
>>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>>> affine
>>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>>> >> >>      ENH: Update itkpng name mangling
>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>> ReferenceImage
>>>>>> >> >> ivar
>>>>>> >> >>      BUG: Increase tolerance for
>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>>> BSplineScatter
>>>>>> >> >> change
>>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>>> >> >> ImageFilterBase
>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>> construction
>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>> ReferenceImage
>>>>>> >> >> ivar
>>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>>> MovingHistogram
>>>>>> >> >> base
>>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>>> anonymous ns
>>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>>> Threshold
>>>>>> >> >> range
>>>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>>> test
>>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>>> >> >>
>>>>>> >> >> Davis Vigneault (7):
>>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>>> c++11
>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>> >> >>
>>>>>> >> >> D?enan Zuki? (1):
>>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>>> >> >>
>>>>>> >> >> Eugene Prilepin (1):
>>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>>> >> >>
>>>>>> >> >> Floris Berendsen (1):
>>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>>> >> >>
>>>>>> >> >> Hans Johnson (29):
>>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>>> >> >>
>>>>>> >> >> Hyun Jae Kang (27):
>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>> VTK file
>>>>>> >> >> header.
>>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>>> >> >> libraries
>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS
>>>>>> X
>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>> VTK file
>>>>>> >> >> header.
>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>>> autological-compare
>>>>>> >> >> warning.
>>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>>> function
>>>>>> >> >>      ENH: Update the Report() function of
>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>>> itkResourceProbe
>>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>>> >> >>
>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>> >> >>      BUG: Fix compilation issues for
>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>> >> >>      BUG: Fix comparison issues for
>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>>> >> >>      ENH: Improve code coverage for
>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>> >> >>
>>>>>> >> >> Julien Michel (1):
>>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>>> >> >> WarpImageFilter
>>>>>> >> >>
>>>>>> >> >> Junjie Bai (2):
>>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>>> LabelObject type
>>>>>> >> >>
>>>>>> >> >> KWSys Robot (4):
>>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>>> >> >>
>>>>>> >> >> LIBPNG Upstream (2):
>>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>>> >> >>
>>>>>> >> >> Laurentiu Nicola (2):
>>>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>> bouncing
>>>>>> >> >>
>>>>>> >> >> Luc Hermitte (8):
>>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>>> 1/...
>>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>>> >> >>
>>>>>> >> >> Lucas Gandel (4):
>>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>> module.
>>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>>> Module
>>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>> >> >>
>>>>>> >> >> Mathieu Malaterre (1):
>>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>>> >> >>
>>>>>> >> >> Matthew McCormick (94):
>>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>>> itkCMakeConfigurationTest.
>>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>>> >> >> ImageToVTKImageFilter.
>>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>>> >> >> target_link_libraries.
>>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>>> AnisotropicDiffusionLBR.
>>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>>>>> 14.04.
>>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>> >> >>      ENH: Add more progress information to
>>>>>> IterativeClosestPoint2.
>>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>>> >> >>      BUG: ContinuousIndex should not be templated over
>>>>>> TCoordRep.
>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>>> ITKTransformMINC.
>>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>> >> >>      ENH: Add wrapping support for building modules externally.
>>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>>> externally.
>>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>> sys.path
>>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so
>>>>>> it gets
>>>>>> >> >> installed."
>>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>>> LabelMapTypes"
>>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>>> advanced.
>>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap
>>>>>> cannot have
>>>>>> >> >> override.
>>>>>> >> >>      COMP: Add wrapping for
>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>>> >> >>      ENH: Remove CMake version check in
>>>>>> ITKModuleHeaderTest.cmake
>>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>>>>> found.
>>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>>> detection.
>>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>> expression
>>>>>> >> >> warning.
>>>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>>> >> >>      BUG: Update Python package installation locations.
>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>>>> >> >>
>>>>>> >> >> Michka Popoff (9):
>>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>> sys.path
>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>> wrapping
>>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>> >> >> ImageFilterBase
>>>>>> >> >> module
>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>> wrapping
>>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>>> >> >>
>>>>>> >> >> Mikhail Isakov (1):
>>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>> baseline image
>>>>>> >> >>
>>>>>> >> >> Nick Tustison (5):
>>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>>> strategy.
>>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>>> >> >>
>>>>>> >> >> Olivier Commowick (3):
>>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>>>> eigen
>>>>>> >> >> system
>>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>>>>>> pythag
>>>>>> >> >> from V3P)
>>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>>> >> >>
>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>>> constructor
>>>>>> >> >> from
>>>>>> >> >> images.
>>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>>> FlatStructuringElement.
>>>>>> >> >>
>>>>>> >> >> Seun Odutola (1):
>>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>>> renamed
>>>>>> >> >> check
>>>>>> >> >> to Check
>>>>>> >> >>
>>>>>> >> >> Shawn Waldon (1):
>>>>>> >> >>      COMP: Set target OS X version in environment for tools
>>>>>> using
>>>>>> >> >> compiler
>>>>>> >> >>
>>>>>> >> >> Simon Alexander (1):
>>>>>> >> >>      BUG: incorrect closest point computation
>>>>>> >> >>
>>>>>> >> >> Tobias Wood (2):
>>>>>> >> >>      BUG: LBFGSB was printing messages even with debug switched
>>>>>> off.
>>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>>> >> >>
>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>>>> >> >> Transform
>>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>>> >> >>      COMP: Update MINC CMake code
>>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>>> >> >>
>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>>> >> >>
>>>>>> >> >> Zach Williamson (10):
>>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>>> >> >>      COMP: Add a missing link to Review module
>>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>>> GPUPDEDeformableRegistration
>>>>>> >> >>      ENH: Use new linking system macros
>>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>>> directories
>>>>>> >> >>      COMP: Recover missing dependencies
>>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> -----------------------------------------------------
>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>> >> >> _____________________________________
>>>>>> >> >> Powered by www.kitware.com
>>>>>> >> >>
>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>> >> >>
>>>>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>> >> >>
>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>> >> >>
>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>
>>>>>
>>>>> _______________________________________________
>>>>
>>>>
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>
>>>> http://kitware.com/products/protraining.php
>>>>
>>>>
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>>
>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>
>>>>>
>>>>
>>
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_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From dzenanz at gmail.com  Wed Nov 25 16:40:46 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Wed, 25 Nov 2015 16:40:46 -0500
Subject: [ITK] [ITK-users] [ITK-dev] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
 <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
 <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>
Message-ID: <CAPf2UMSqrPnbJfaVZ-Nsw=m0iw8rnPENLsD0x588ekJ7wHG7yw@mail.gmail.com>

It turns out that all the compile errors were occurring in WikiExamples. I
solved all except one:
ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
23, but it should be judging from the comment on that line.

For the rest, I created a pull request:
https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3

On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com>
wrote:

> Perfect.  I'm under a deadline that is likely to eat the rest of the week
> but if that clears up I'll try and jump in earlier.
>
> On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> OK I will work on it for an hour or two now, and I will make a branch and
>> push it to Gerrit so whoever wants can pick up from there and keep updating
>> it.
>>
>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>>
>>> Makes sense.  At this point I am unlikely to have time to look at this
>>> until Saturday, but have hopes for a few free hours there.
>>>
>>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> Building git master from Nov 23rd with examples and testing enabled I
>>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>>> in fixing them?
>>>>
>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>> skalexander at gmail.com> wrote:
>>>>
>>>>> Two of the three failures look like truncation issues (like
>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>>
>>>>> The other (
>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>>  is less obvious.
>>>>>
>>>>> If I have time this evening I'll try and have a look at these.
>>>>>
>>>>> Is your standard test build in 32 bit ?  That might explain the
>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>> why 2015 would trigger but not 2013.
>>>>>
>>>>>
>>>>>
>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>> matt.mccormick at kitware.com> wrote:
>>>>>
>>>>>> Ah, cool!  Here:
>>>>>>
>>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>
>>>>>> Could you please look into the test failures?
>>>>>>
>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>
>>>>>> Thanks,
>>>>>> Matt
>>>>>>
>>>>>>
>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>> skalexander at gmail.com> wrote:
>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>>> SIMON-LAP,
>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>> one).  VS2013
>>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks like
>>>>>> a
>>>>>> > truncation problem on the resuts.
>>>>>> >
>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>> matt.mccormick at kitware.com>
>>>>>> > wrote:
>>>>>> >>
>>>>>> >> Hi Simon,
>>>>>> >>
>>>>>> >> Thanks for testing.
>>>>>> >>
>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>>>> >>
>>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>> >>
>>>>>> >> Are there any different flags? Could you please submit an
>>>>>> Experimental
>>>>>> >> build?
>>>>>> >>
>>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>> Submit -C
>>>>>> >> Release
>>>>>> >>
>>>>>> >> from a fresh build tree.
>>>>>> >>
>>>>>> >> Thanks,
>>>>>> >> Matt
>>>>>> >>
>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>> skalexander at gmail.com>
>>>>>> >> wrote:
>>>>>> >> > Looks like a few problems with x64 build on visual studio 2015 -
>>>>>> do you
>>>>>> >> > have
>>>>>> >> > a test machine in this configuration?
>>>>>> >> >
>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>> matt.mccormick at kitware.com>
>>>>>> >> > wrote:
>>>>>> >> >>
>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>>> announce
>>>>>> >> >> that
>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>>>>> >> >> testing!
>>>>>> >> >>
>>>>>> >> >> Please take this opportunity to test the new features in the
>>>>>> release
>>>>>> >> >> candidate.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> To obtain the source code,
>>>>>> >> >>
>>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>>> >> >>  cd ITK
>>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>>> >> >>
>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> A few selected highlights for this release:
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>> generation of
>>>>>> >> >> meshes
>>>>>> >> >> from binary segmentation images, and the
>>>>>> AnisotropicDiffusionLBR module
>>>>>> >> >> improved edge-preserving smoothing.
>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>> continuous
>>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>>> for your
>>>>>> >> >> C++
>>>>>> >> >> algorithms.
>>>>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>>>>> >> >> standard
>>>>>> >> >> installation
>>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>>>>> >> >> itk::VariableLengthVector?s
>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>>> >> >> compile /
>>>>>> >> >> test
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Please test the release candidate and share your experiences on
>>>>>> the
>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>>> module
>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>> dependencies for
>>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>>> command.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>>> performs
>>>>>> >> >> on
>>>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>>>> with:
>>>>>> >> >>
>>>>>> >> >>   mkdir ../ITK-build
>>>>>> >> >>   cd ../ITK-build
>>>>>> >> >>   cmake ../ITK
>>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>> Submit
>>>>>> >> >>
>>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>>> command.
>>>>>> >> >>
>>>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>>>> Testing
>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>>> release.
>>>>>> >> >> We
>>>>>> >> >> would especially like to recognize the new contributors: Mikhail
>>>>>> >> >> Isakov,
>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood,
>>>>>> Seun
>>>>>> >> >> Odutola,
>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>> Williamson,
>>>>>> >> >> Luc
>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>> >> >>
>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> New Features
>>>>>> >> >> ---------------------
>>>>>> >> >>
>>>>>> >> >> Wrapping improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Python 3 supported
>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>>> directory in
>>>>>> >> >> the
>>>>>> >> >> ?itk? package
>>>>>> >> >> * Wrapping package size is decreased
>>>>>> >> >> * Better package portability on Mac OSX
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> New Remote Modules
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Cuberille
>>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>>>> >> >>    * Web browser reproducibility:
>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Core Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>> source tree
>>>>>> >> >> and
>>>>>> >> >> on GitHub
>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>>> >> >> * New utilities in itk::Math:
>>>>>> >> >>    * AlmostEquals
>>>>>> >> >>    * NotAlmostEquals
>>>>>> >> >>    * ExactlyEquals
>>>>>> >> >>    * NotExactlyEquals
>>>>>> >> >> * New itk::NumericTraits
>>>>>> >> >>    * IsInteger
>>>>>> >> >>    * IsSigned
>>>>>> >> >> * Improved C++11 support
>>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Filtering Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>>> module
>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>> ITKImageFilterBase
>>>>>> >> >> module
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Registration Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Build Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>>> >> >> compile /
>>>>>> >> >> test
>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>>> >> >> * Expat third party library is now name mangled
>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>>>> built
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Performance Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members
>>>>>> for
>>>>>> >> >> metaprogramming
>>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>>> >> >>    * itk::mpl::EnableIf
>>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>>> >> >>    * itk::mpl::IsConvertible
>>>>>> >> >>    * itk::mpl::IsNumber
>>>>>> >> >>    * itk::mpl::IsSame
>>>>>> >> >>    * itk::mpl::PromoteType
>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Documentation Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>> Examples
>>>>>> >> >> * ITK Software Guide improvements
>>>>>> >> >>    * How to use Python wrapping
>>>>>> >> >>    * How to create an ITK module
>>>>>> >> >>    * Improvements to segmentation examples
>>>>>> >> >>    * Expanded Canny edge detection example
>>>>>> >> >>    * Expanded tree container example
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Third Party Library Updates
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * FFTW updated to latest upstream
>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>> >> >> * Build with the latest VTK
>>>>>> >> >> * PNG update to the latest upstream
>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>> >> >> * MINC updated to the latest upstream
>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>>>> >> >>
>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Private copy constructors and operator= use
>>>>>> ITK_DELETE_FUNCTION
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> * *Lots* of important bug fixes
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> * And much more! See details in the log below.
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>> >> >> --------------------------------------------
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Abhishek Tiwari (1):
>>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>>> >> >>
>>>>>> >> >> Adam Snyder (1):
>>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>>> >> >>
>>>>>> >> >> Alexander Leinoff (6):
>>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>>> >> >> itkMath.h
>>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>>> Math::AlmostEquals
>>>>>> >> >>      ENH: Updates fftw dependency
>>>>>> >> >>
>>>>>> >> >> Arnaud Gelas (5):
>>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>> >> >>      DOC: add doxgen documentation for
>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>> >> >>      ENH: add tests to exercise
>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>> >> >>
>>>>>> >> >> Betsy McPhail (1):
>>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>>> >> >>
>>>>>> >> >> Bill Hoffman (2):
>>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>>> >> >> installed.
>>>>>> >> >>
>>>>>> >> >> Bill Lorensen (4):
>>>>>> >> >>      COMP: VTkGlue linker errors
>>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>>> >> >>      ENH: Better layout strategy
>>>>>> >> >>
>>>>>> >> >> Brad King (3):
>>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>>>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>>>>> project
>>>>>> >> >>
>>>>>> >> >> Bradley Lowekamp (31):
>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>> construction
>>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>>> initializer
>>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>>> >> >>      ENH: Adding initial update script from used libpng version.
>>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged code
>>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>>> affine
>>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>>> >> >>      ENH: Update itkpng name mangling
>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>> ReferenceImage
>>>>>> >> >> ivar
>>>>>> >> >>      BUG: Increase tolerance for
>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>>> BSplineScatter
>>>>>> >> >> change
>>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>>> >> >> ImageFilterBase
>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>> construction
>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>> ReferenceImage
>>>>>> >> >> ivar
>>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>>> MovingHistogram
>>>>>> >> >> base
>>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>>> anonymous ns
>>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>>> Threshold
>>>>>> >> >> range
>>>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>>> test
>>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>>> >> >>
>>>>>> >> >> Davis Vigneault (7):
>>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>>> c++11
>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>> >> >>
>>>>>> >> >> D?enan Zuki? (1):
>>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>>> >> >>
>>>>>> >> >> Eugene Prilepin (1):
>>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>>> >> >>
>>>>>> >> >> Floris Berendsen (1):
>>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>>> >> >>
>>>>>> >> >> Hans Johnson (29):
>>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>>> >> >>
>>>>>> >> >> Hyun Jae Kang (27):
>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>> VTK file
>>>>>> >> >> header.
>>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>>> >> >> libraries
>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac OS
>>>>>> X
>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>> VTK file
>>>>>> >> >> header.
>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>>> autological-compare
>>>>>> >> >> warning.
>>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning messages
>>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>>> function
>>>>>> >> >>      ENH: Update the Report() function of
>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>>> itkResourceProbe
>>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>>> >> >>
>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>> >> >>      BUG: Fix compilation issues for
>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>> >> >>      BUG: Fix comparison issues for
>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>>> >> >>      ENH: Improve code coverage for
>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>> >> >>
>>>>>> >> >> Julien Michel (1):
>>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>>> >> >> WarpImageFilter
>>>>>> >> >>
>>>>>> >> >> Junjie Bai (2):
>>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>>> LabelObject type
>>>>>> >> >>
>>>>>> >> >> KWSys Robot (4):
>>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>>> >> >>
>>>>>> >> >> LIBPNG Upstream (2):
>>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>>> >> >>
>>>>>> >> >> Laurentiu Nicola (2):
>>>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>> bouncing
>>>>>> >> >>
>>>>>> >> >> Luc Hermitte (8):
>>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>>> 1/...
>>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>>> >> >>
>>>>>> >> >> Lucas Gandel (4):
>>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>> module.
>>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>>> Module
>>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>> >> >>
>>>>>> >> >> Mathieu Malaterre (1):
>>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>>> >> >>
>>>>>> >> >> Matthew McCormick (94):
>>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>>> itkCMakeConfigurationTest.
>>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>>> >> >> ImageToVTKImageFilter.
>>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>>> >> >> target_link_libraries.
>>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>>> AnisotropicDiffusionLBR.
>>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>>>>> 14.04.
>>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>> >> >>      ENH: Add more progress information to
>>>>>> IterativeClosestPoint2.
>>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>>> >> >>      BUG: ContinuousIndex should not be templated over
>>>>>> TCoordRep.
>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>>> ITKTransformMINC.
>>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>> >> >>      ENH: Add wrapping support for building modules externally.
>>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>>> externally.
>>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>>> >> >>      COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument type.
>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>> sys.path
>>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so
>>>>>> it gets
>>>>>> >> >> installed."
>>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>>> LabelMapTypes"
>>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>>> advanced.
>>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap
>>>>>> cannot have
>>>>>> >> >> override.
>>>>>> >> >>      COMP: Add wrapping for
>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>>> >> >>      ENH: Remove CMake version check in
>>>>>> ITKModuleHeaderTest.cmake
>>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>>>>> found.
>>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>>> detection.
>>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>> expression
>>>>>> >> >> warning.
>>>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>>> >> >>      STYLE: Improve namespace bracket style in itkIsConvertible.
>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>>> >> >>      BUG: Update Python package installation locations.
>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module test.
>>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>>>> >> >>
>>>>>> >> >> Michka Popoff (9):
>>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>> sys.path
>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>> wrapping
>>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>> >> >> ImageFilterBase
>>>>>> >> >> module
>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>> wrapping
>>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>>> >> >>
>>>>>> >> >> Mikhail Isakov (1):
>>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>> baseline image
>>>>>> >> >>
>>>>>> >> >> Nick Tustison (5):
>>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>>> strategy.
>>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>>> >> >>
>>>>>> >> >> Olivier Commowick (3):
>>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>>>> eigen
>>>>>> >> >> system
>>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken from
>>>>>> pythag
>>>>>> >> >> from V3P)
>>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>>> >> >>
>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>>> constructor
>>>>>> >> >> from
>>>>>> >> >> images.
>>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>>> FlatStructuringElement.
>>>>>> >> >>
>>>>>> >> >> Seun Odutola (1):
>>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>>> renamed
>>>>>> >> >> check
>>>>>> >> >> to Check
>>>>>> >> >>
>>>>>> >> >> Shawn Waldon (1):
>>>>>> >> >>      COMP: Set target OS X version in environment for tools
>>>>>> using
>>>>>> >> >> compiler
>>>>>> >> >>
>>>>>> >> >> Simon Alexander (1):
>>>>>> >> >>      BUG: incorrect closest point computation
>>>>>> >> >>
>>>>>> >> >> Tobias Wood (2):
>>>>>> >> >>      BUG: LBFGSB was printing messages even with debug switched
>>>>>> off.
>>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>>> >> >>
>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>>>> >> >> Transform
>>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>>> >> >>      COMP: Update MINC CMake code
>>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>>> >> >>
>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>>> >> >>
>>>>>> >> >> Zach Williamson (10):
>>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>>> >> >>      COMP: Add a missing link to Review module
>>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>>> GPUPDEDeformableRegistration
>>>>>> >> >>      ENH: Use new linking system macros
>>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>>> directories
>>>>>> >> >>      COMP: Recover missing dependencies
>>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> -----------------------------------------------------
>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>> >> >> _____________________________________
>>>>>> >> >> Powered by www.kitware.com
>>>>>> >> >>
>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>> >> >>
>>>>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>> >> >>
>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>> >> >>
>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>
>>>>>
>>>>> _______________________________________________
>>>>
>>>>
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>
>>>> http://kitware.com/products/protraining.php
>>>>
>>>>
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>>
>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>
>>>>>
>>>>
>>
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From itkhelpacc at gmail.com  Thu Nov 26 07:48:52 2015
From: itkhelpacc at gmail.com (vis)
Date: Thu, 26 Nov 2015 05:48:52 -0700 (MST)
Subject: [ITK] [ITK-users] reconstruction 3d (PSEUDO CT) volume from two or
 more 2d projection images
Message-ID: <1448542132349-7588211.post@n2.nabble.com>

hi,
Im working on project regarding 2d/3d registration.. I came across many
papers in ITK that help to achieve this as in [1]... have two questions

(A) these frameworks are designed for ITKv3 but im using  ITKv4( i have
already used ITKv4 for developing various parts of my application) Is it
possible to integrate [1] with my application? if yes can u please guide me
who to do so?

(B) while doing my literature survey i came across papers like [2],
[3],[4]... wherein they use two projection images (one from lateral and one
from AP) to reconstruct a pseudo 3d ct volume.. it is obvious that the
pseudo ct generated wouldnt have the information present in actual ct.. but
even if i could get the outline of the 3d ct volume would help me alot..(i
Plan on performing 3d/3d registration of pre-op CT with pseudo ct obtained
now) could anyone please help me out with this problem?

Regards
Vishal

[1]http://www.insight-journal.org/browse/publication/800
[2]http://iopscience.iop.org/article/10.1088/0031-9155/56/4/010/pdf
[3]http://www.researchgate.net/publication/268302050_3D_Skull_Warping_from_2D_X-Ray_Lateral_and_PA_Images
[4]A review of 3D/2D registration methods for image-guided interventions P.
Markelj
[5] 3D reconstruction of the human rib cage from 2D projection
images using a statistical shape model DOI 10.1007/s11548-009-0390-2



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From seun at rogue-research.com  Thu Nov 26 16:04:04 2015
From: seun at rogue-research.com (Seun Odutola)
Date: Thu, 26 Nov 2015 16:04:04 -0500
Subject: [ITK] [ITK-dev] itkImageToImageFilter issue with negative space
	from	Analyze file
Message-ID: <1D91665A-B784-462D-865C-B47973DA7F51@rogue-research.com>

Hi Everyone,

      I have an Anaylze 7.5 file with negative spacing in it and previously my unit test for this file passed in ITK 3.20.x which is now failing in ITK 4.9 (git master). I happen to have noticed there is a tolerance check in the file itkImageToImageFilter.hxx which in my opinion needs to be of absolute value. My question is, is the calculation of the tolerance deliberate?  Note that for this file, inputPtr1->GetSpacing()[0] gives -1.

const SpacePrecisionType coordinateTol
        = this->m_CoordinateTolerance * inputPtr1->GetSpacing()[0]; // use first dimension spacing
        
      if ( !inputPtr1->GetOrigin().GetVnlVector().is_equal(inputPtrN->GetOrigin().GetVnlVector(), coordinateTol) ||
           !inputPtr1->GetSpacing().GetVnlVector().is_equal(inputPtrN->GetSpacing().GetVnlVector(), coordinateTol) ||
           !inputPtr1->GetDirection().GetVnlMatrix().as_ref().is_equal(inputPtrN->GetDirection().GetVnlMatrix(), this->m_DirectionTolerance) )
        {
        std::ostringstream originString, spacingString, directionString;
        if ( !inputPtr1->GetOrigin().GetVnlVector().is_equal(inputPtrN->GetOrigin().GetVnlVector(), coordinateTol) )
          {
          originString.setf( std::ios::scientific );
          originString.precision( 7 );
          originString << "InputImage Origin: " << inputPtr1->GetOrigin()
                       << ", InputImage" << it.GetName() << " Origin: " << inputPtrN->GetOrigin() << std::endl;
          originString << "\tTolerance: " << coordinateTol << std::endl;
          }
        

????.


Regards,
  Seun.
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From cervellone at gmail.com  Thu Nov 26 20:28:10 2015
From: cervellone at gmail.com (cervellone at gmail.com)
Date: Fri, 27 Nov 2015 02:28:10 +0100
Subject: [ITK] [ITK-users] missing watershed filters ???
Message-ID: <CAO8H67OLnRqnd3gF0FcM0BgBBNisFu-2=9KHc1Qj7yia7Po_2g@mail.gmail.com>

Dear all,

i have been using ITK-4.6.1 for quite some time, always without problems.
but today i wanted to use the morphological watershed from markers I found
out that the function is missing.
At least that is the error i am getting.

AttributeError: 'LazyITKModule' object has no attribute
'MorphologicalWatershedFromMarkersImageFilter'

All the other filters seem to be there.

Does anybody have an idea ?

Thank you
jp
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From richard.beare at gmail.com  Thu Nov 26 21:00:57 2015
From: richard.beare at gmail.com (Richard Beare)
Date: Fri, 27 Nov 2015 13:00:57 +1100
Subject: [ITK] [ITK-users] missing watershed filters ???
In-Reply-To: <CAO8H67OLnRqnd3gF0FcM0BgBBNisFu-2=9KHc1Qj7yia7Po_2g@mail.gmail.com>
References: <CAO8H67OLnRqnd3gF0FcM0BgBBNisFu-2=9KHc1Qj7yia7Po_2g@mail.gmail.com>
Message-ID: <CA+V7QS-hPhn_NB01fGwtMg-qx44AiZBFdp6GW_vSG9bRp_TSqA@mail.gmail.com>

It has been put in review, for some reason, so you need to enable that
option when installing ITK.

On Fri, Nov 27, 2015 at 12:28 PM, <cervellone at gmail.com> wrote:

> Dear all,
>
> i have been using ITK-4.6.1 for quite some time, always without problems.
> but today i wanted to use the morphological watershed from markers I found
> out that the function is missing.
> At least that is the error i am getting.
>
> AttributeError: 'LazyITKModule' object has no attribute
> 'MorphologicalWatershedFromMarkersImageFilter'
>
> All the other filters seem to be there.
>
> Does anybody have an idea ?
>
> Thank you
> jp
>
>
>
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
>
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From cervellone at gmail.com  Thu Nov 26 22:09:14 2015
From: cervellone at gmail.com (cervellone at gmail.com)
Date: Fri, 27 Nov 2015 04:09:14 +0100
Subject: [ITK] [ITK-users] missing watershed filters ???
In-Reply-To: <CA+V7QS-hPhn_NB01fGwtMg-qx44AiZBFdp6GW_vSG9bRp_TSqA@mail.gmail.com>
References: <CAO8H67OLnRqnd3gF0FcM0BgBBNisFu-2=9KHc1Qj7yia7Po_2g@mail.gmail.com>
 <CA+V7QS-hPhn_NB01fGwtMg-qx44AiZBFdp6GW_vSG9bRp_TSqA@mail.gmail.com>
Message-ID: <CAO8H67P2s3qu5JvcYAXftLaXfyAi6=QgFqgwOGbz81GbUpV1Fw@mail.gmail.com>

Thanks for the fast reply
How do i do that ? is there a option in cmake ?
I did not find any

jp


On Fri, Nov 27, 2015 at 3:00 AM, Richard Beare <richard.beare at gmail.com>
wrote:

> It has been put in review, for some reason, so you need to enable that
> option when installing ITK.
>
> On Fri, Nov 27, 2015 at 12:28 PM, <cervellone at gmail.com> wrote:
>
>> Dear all,
>>
>> i have been using ITK-4.6.1 for quite some time, always without problems.
>> but today i wanted to use the morphological watershed from markers I found
>> out that the function is missing.
>> At least that is the error i am getting.
>>
>> AttributeError: 'LazyITKModule' object has no attribute
>> 'MorphologicalWatershedFromMarkersImageFilter'
>>
>> All the other filters seem to be there.
>>
>> Does anybody have an idea ?
>>
>> Thank you
>> jp
>>
>>
>>
>>
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/insight-users
>>
>>
>
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From richard.beare at gmail.com  Thu Nov 26 22:12:58 2015
From: richard.beare at gmail.com (Richard Beare)
Date: Fri, 27 Nov 2015 14:12:58 +1100
Subject: [ITK] [ITK-users] missing watershed filters ???
In-Reply-To: <CAO8H67P2s3qu5JvcYAXftLaXfyAi6=QgFqgwOGbz81GbUpV1Fw@mail.gmail.com>
References: <CAO8H67OLnRqnd3gF0FcM0BgBBNisFu-2=9KHc1Qj7yia7Po_2g@mail.gmail.com>
 <CA+V7QS-hPhn_NB01fGwtMg-qx44AiZBFdp6GW_vSG9bRp_TSqA@mail.gmail.com>
 <CAO8H67P2s3qu5JvcYAXftLaXfyAi6=QgFqgwOGbz81GbUpV1Fw@mail.gmail.com>
Message-ID: <CA+V7QS85rscJywvaEYW1JRXRw595fDPVeYcRvM9TipRiV0HtMA@mail.gmail.com>

Yes - I think you need to toggle advanced mode and it is in there somewhere.

On Fri, Nov 27, 2015 at 2:09 PM, <cervellone at gmail.com> wrote:

> Thanks for the fast reply
> How do i do that ? is there a option in cmake ?
> I did not find any
>
> jp
>
>
> On Fri, Nov 27, 2015 at 3:00 AM, Richard Beare <richard.beare at gmail.com>
> wrote:
>
>> It has been put in review, for some reason, so you need to enable that
>> option when installing ITK.
>>
>> On Fri, Nov 27, 2015 at 12:28 PM, <cervellone at gmail.com> wrote:
>>
>>> Dear all,
>>>
>>> i have been using ITK-4.6.1 for quite some time, always without
>>> problems. but today i wanted to use the morphological watershed from
>>> markers I found out that the function is missing.
>>> At least that is the error i am getting.
>>>
>>> AttributeError: 'LazyITKModule' object has no attribute
>>> 'MorphologicalWatershedFromMarkersImageFilter'
>>>
>>> All the other filters seem to be there.
>>>
>>> Does anybody have an idea ?
>>>
>>> Thank you
>>> jp
>>>
>>>
>>>
>>>
>>> _____________________________________
>>> Powered by www.kitware.com
>>>
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>>
>>> Kitware offers ITK Training Courses, for more information visit:
>>> http://www.kitware.com/products/protraining.php
>>>
>>> Please keep messages on-topic and check the ITK FAQ at:
>>> http://www.itk.org/Wiki/ITK_FAQ
>>>
>>> Follow this link to subscribe/unsubscribe:
>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>
>>>
>>
>
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From cervellone at gmail.com  Thu Nov 26 23:08:42 2015
From: cervellone at gmail.com (cervellone at gmail.com)
Date: Fri, 27 Nov 2015 05:08:42 +0100
Subject: [ITK] [ITK-users] missing watershed filters ???
In-Reply-To: <CA+V7QS85rscJywvaEYW1JRXRw595fDPVeYcRvM9TipRiV0HtMA@mail.gmail.com>
References: <CAO8H67OLnRqnd3gF0FcM0BgBBNisFu-2=9KHc1Qj7yia7Po_2g@mail.gmail.com>
 <CA+V7QS-hPhn_NB01fGwtMg-qx44AiZBFdp6GW_vSG9bRp_TSqA@mail.gmail.com>
 <CAO8H67P2s3qu5JvcYAXftLaXfyAi6=QgFqgwOGbz81GbUpV1Fw@mail.gmail.com>
 <CA+V7QS85rscJywvaEYW1JRXRw595fDPVeYcRvM9TipRiV0HtMA@mail.gmail.com>
Message-ID: <CAO8H67MQUA3XSW2Asq5P+pBAjyTry5STDzWLeqjjh4hjY4bfsw@mail.gmail.com>

I am in advanced mode and searching for it directly does not yield any
result.

i find the sourcefiles of the filter and other in Modules/Nonunit/Review/
in my src directory so I checked the ITKReview on in cmake  and i will see
what happens now after building.
Is there a way to build only the changes and not the entire project ?

Thanks
jp




On Fri, Nov 27, 2015 at 4:12 AM, Richard Beare <richard.beare at gmail.com>
wrote:

> Yes - I think you need to toggle advanced mode and it is in there
> somewhere.
>
> On Fri, Nov 27, 2015 at 2:09 PM, <cervellone at gmail.com> wrote:
>
>> Thanks for the fast reply
>> How do i do that ? is there a option in cmake ?
>> I did not find any
>>
>> jp
>>
>>
>> On Fri, Nov 27, 2015 at 3:00 AM, Richard Beare <richard.beare at gmail.com>
>> wrote:
>>
>>> It has been put in review, for some reason, so you need to enable that
>>> option when installing ITK.
>>>
>>> On Fri, Nov 27, 2015 at 12:28 PM, <cervellone at gmail.com> wrote:
>>>
>>>> Dear all,
>>>>
>>>> i have been using ITK-4.6.1 for quite some time, always without
>>>> problems. but today i wanted to use the morphological watershed from
>>>> markers I found out that the function is missing.
>>>> At least that is the error i am getting.
>>>>
>>>> AttributeError: 'LazyITKModule' object has no attribute
>>>> 'MorphologicalWatershedFromMarkersImageFilter'
>>>>
>>>> All the other filters seem to be there.
>>>>
>>>> Does anybody have an idea ?
>>>>
>>>> Thank you
>>>> jp
>>>>
>>>>
>>>>
>>>>
>>>> _____________________________________
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>> http://www.kitware.com/products/protraining.php
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>>
>>>>
>>>
>>
>
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From p.zaffino at yahoo.it  Fri Nov 27 05:21:50 2015
From: p.zaffino at yahoo.it (Paolo Zaffino)
Date: Fri, 27 Nov 2015 11:21:50 +0100
Subject: [ITK] [ITK-dev] Gerrit login
Message-ID: <56582EBE.9030205@yahoo.it>

Dear all,
I am facing some problems with gerrit login.
I approved the github stuff but when I try to open the page 
http://review.source.kitware.com/ I get the message "Forbidden".

Any idea?
Thank you very much.

Best.
Paolo
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From dominik.hofer at gmail.com  Fri Nov 27 07:28:54 2015
From: dominik.hofer at gmail.com (dominik)
Date: Fri, 27 Nov 2015 05:28:54 -0700 (MST)
Subject: [ITK] [ITK-users] Own Transformation Class
Message-ID: <1448627334852-7588218.post@n2.nabble.com>

Hey guys, 

I have been working on a project in Slicer which is about registering
histology slices to an MRI volume of the same subject. So far everything was
straight-forward but now the implemented registration algorithms in Slicer
are coming to their limits and I think I have to write some of the stuff
myself in ITK. I can use SimpleITK in python or the C++ version in Slicer
depending on which plugin I want to write. The stuff I wrote so far is in
Python but I think I can write another plugin in C++ just for the
registration algorithm and execute this in my Python plugin. 

So, now to the questions: 

- I'd like to constraint the registration algorithm because both modalities
have a very robust feature which is the urethra. So I'd like the
registration algorithm to stay as it is and just limit the transformation so
the histology-urethra follows the MRI-urethra and the rotation center is in
the urethra. I read in the slicers forum that I can write my own
transformation class for this but I didn't have a lot of success so far so
I'm thankful for more hints on how to write my own transformation class or
any other solutions. 

- Once every histology slice is registered, I'd like to merge these slices
to one. Is there an easy solution in ITK for this? I read the
ResampleImageFilter is usable for this but so far I just understood that it
resamples an image depending on how you transform it. 

Cheers!



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From dzenanz at gmail.com  Fri Nov 27 10:23:01 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Fri, 27 Nov 2015 10:23:01 -0500
Subject: [ITK] [ITK-dev] Gerrit login
In-Reply-To: <56582EBE.9030205@yahoo.it>
References: <56582EBE.9030205@yahoo.it>
Message-ID: <CAPf2UMRunvEKwuYGNfBGMMxuEZDhbb-v4Pzg9wnB1YGbuKho1A@mail.gmail.com>

Hi Paolo,

clicking on your link works for me. Have you tried clearing cookies for
that domain? You might be logged in with the wrong account.

Regards,
D?enan

On Fri, Nov 27, 2015 at 5:21 AM, Paolo Zaffino <p.zaffino at yahoo.it> wrote:

> Dear all,
> I am facing some problems with gerrit login.
> I approved the github stuff but when I try to open the page
> http://review.source.kitware.com/ I get the message "Forbidden".
>
> Any idea?
> Thank you very much.
>
> Best.
> Paolo
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
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From dzenanz at gmail.com  Fri Nov 27 10:25:05 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Fri, 27 Nov 2015 10:25:05 -0500
Subject: [ITK] [ITK-users] missing watershed filters ???
In-Reply-To: <CAO8H67MQUA3XSW2Asq5P+pBAjyTry5STDzWLeqjjh4hjY4bfsw@mail.gmail.com>
References: <CAO8H67OLnRqnd3gF0FcM0BgBBNisFu-2=9KHc1Qj7yia7Po_2g@mail.gmail.com>
 <CA+V7QS-hPhn_NB01fGwtMg-qx44AiZBFdp6GW_vSG9bRp_TSqA@mail.gmail.com>
 <CAO8H67P2s3qu5JvcYAXftLaXfyAi6=QgFqgwOGbz81GbUpV1Fw@mail.gmail.com>
 <CA+V7QS85rscJywvaEYW1JRXRw595fDPVeYcRvM9TipRiV0HtMA@mail.gmail.com>
 <CAO8H67MQUA3XSW2Asq5P+pBAjyTry5STDzWLeqjjh4hjY4bfsw@mail.gmail.com>
Message-ID: <CAPf2UMSWTz5CMAcBEFinsU5pXcSEzV24Tk7-AfyT+fBXn4Dt4Q@mail.gmail.com>

By default, only the affected files/projects should be built, so it should
be much faster than a clean build.

HTH,
D?enan

On Thu, Nov 26, 2015 at 11:08 PM, <cervellone at gmail.com> wrote:

> I am in advanced mode and searching for it directly does not yield any
> result.
>
> i find the sourcefiles of the filter and other in Modules/Nonunit/Review/
> in my src directory so I checked the ITKReview on in cmake  and i will see
> what happens now after building.
> Is there a way to build only the changes and not the entire project ?
>
> Thanks
> jp
>
>
>
>
> On Fri, Nov 27, 2015 at 4:12 AM, Richard Beare <richard.beare at gmail.com>
> wrote:
>
>> Yes - I think you need to toggle advanced mode and it is in there
>> somewhere.
>>
>> On Fri, Nov 27, 2015 at 2:09 PM, <cervellone at gmail.com> wrote:
>>
>>> Thanks for the fast reply
>>> How do i do that ? is there a option in cmake ?
>>> I did not find any
>>>
>>> jp
>>>
>>>
>>> On Fri, Nov 27, 2015 at 3:00 AM, Richard Beare <richard.beare at gmail.com>
>>> wrote:
>>>
>>>> It has been put in review, for some reason, so you need to enable that
>>>> option when installing ITK.
>>>>
>>>> On Fri, Nov 27, 2015 at 12:28 PM, <cervellone at gmail.com> wrote:
>>>>
>>>>> Dear all,
>>>>>
>>>>> i have been using ITK-4.6.1 for quite some time, always without
>>>>> problems. but today i wanted to use the morphological watershed from
>>>>> markers I found out that the function is missing.
>>>>> At least that is the error i am getting.
>>>>>
>>>>> AttributeError: 'LazyITKModule' object has no attribute
>>>>> 'MorphologicalWatershedFromMarkersImageFilter'
>>>>>
>>>>> All the other filters seem to be there.
>>>>>
>>>>> Does anybody have an idea ?
>>>>>
>>>>> Thank you
>>>>> jp
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> _____________________________________
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>> http://www.kitware.com/products/protraining.php
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>
>>>>>
>>>>
>>>
>>
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
>
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From matt.mccormick at kitware.com  Fri Nov 27 17:01:19 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Fri, 27 Nov 2015 17:01:19 -0500
Subject: [ITK] [ITK-dev] Gerrit login
In-Reply-To: <56582EBE.9030205@yahoo.it>
References: <56582EBE.9030205@yahoo.it>
Message-ID: <CALzTN-R9g1B75h_Cb7=O1qUZCwcv4t_j1DQqQxr_Sbw8HazXZw@mail.gmail.com>

Hi Paolo,

We had another account experience this issue when they had started an
account with the old Gerrit system, but they had not logged in with
the new GitHub authentication before the recent move to Gerrit 2.11.

I will work with the sys-admin's to reset your account.

If anyone else experiences this, please let me know.

Thanks,
Matt

On Fri, Nov 27, 2015 at 5:21 AM, Paolo Zaffino <p.zaffino at yahoo.it> wrote:
> Dear all,
> I am facing some problems with gerrit login.
> I approved the github stuff but when I try to open the page
> http://review.source.kitware.com/ I get the message "Forbidden".
>
> Any idea?
> Thank you very much.
>
> Best.
> Paolo
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-developers
_______________________________________________
Powered by www.kitware.com

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http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
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From sean at rogue-research.com  Fri Nov 27 17:05:44 2015
From: sean at rogue-research.com (Sean McBride)
Date: Fri, 27 Nov 2015 17:05:44 -0500
Subject: [ITK] [ITK-dev] Gerrit login
In-Reply-To: <56582EBE.9030205@yahoo.it>
References: <56582EBE.9030205@yahoo.it>
Message-ID: <20151127220544.877223362@mail.rogue-research.com>

On Fri, 27 Nov 2015 11:21:50 +0100, Paolo Zaffino said:

>I am facing some problems with gerrit login.
>I approved the github stuff but when I try to open the page 
>http://review.source.kitware.com/ I get the message "Forbidden".

What browser are you using?

I haven't used gerrit much lately, but when I try to log in, I get to the github login page, enter my credentials, then it tells me "Your browser did something unexpected. Please contact us if the problem persists."  Then I try in Firefox and it works.  (Normally I use Safari.)  Logging into github directly with Safari works.

Cheers,

-- 
____________________________________________________________
Sean McBride, B. Eng                 sean at rogue-research.com
Rogue Research                        www.rogue-research.com 
Mac Software Developer              Montr?al, Qu?bec, Canada


_______________________________________________
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From p.zaffino at yahoo.it  Mon Nov 30 05:50:08 2015
From: p.zaffino at yahoo.it (Paolo Zaffino)
Date: Mon, 30 Nov 2015 11:50:08 +0100
Subject: [ITK] [ITK-dev] Gerrit login
In-Reply-To: <20151127220544.877223362@mail.rogue-research.com>
References: <56582EBE.9030205@yahoo.it>
 <20151127220544.877223362@mail.rogue-research.com>
Message-ID: <565C29E0.4080607@yahoo.it>

Hi,
I am using both crhomium and firefox, but nothing changes (also with a 
clear cache).
I think that, as Matt said, it is an admin side issue.

Thanks a lot.
Paolo




On 27/11/2015 23:05, Sean McBride wrote:
> On Fri, 27 Nov 2015 11:21:50 +0100, Paolo Zaffino said:
>
>> I am facing some problems with gerrit login.
>> I approved the github stuff but when I try to open the page
>> http://review.source.kitware.com/ I get the message "Forbidden".
> What browser are you using?
>
> I haven't used gerrit much lately, but when I try to log in, I get to the github login page, enter my credentials, then it tells me "Your browser did something unexpected. Please contact us if the problem persists."  Then I try in Firefox and it works.  (Normally I use Safari.)  Logging into github directly with Safari works.
>
> Cheers,
>

_______________________________________________
Powered by www.kitware.com

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http://www.kitware.com/opensource/opensource.html

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From goretzki.imre at gmail.com  Mon Nov 30 06:14:13 2015
From: goretzki.imre at gmail.com (Imre Goretzki)
Date: Mon, 30 Nov 2015 12:14:13 +0100
Subject: [ITK] Using ImagePlaneWidget to display 3D Images
In-Reply-To: <56543F97.3030508@gmail.com>
References: <mailman.0.1448031163.1645.community@itk.org>
 <564F3B26.1020003@gmail.com> <56543F97.3030508@gmail.com>
Message-ID: <565C2F85.50104@gmail.com>

Hey guys

I have some trouble displaying a 3D Image (multipaged tif) via VTK. My 
Setup:

grayscale image (520x520x47)
Single slice (1 to 47) is an image (520x520)
the minimum of this 3d image is 865, the maximum 16288

reading via ITK works great, I can even display 2D images using the 
ImageToVTKImageFilter

Now the problem:

I tried to connect the ITK image with VTK to visualize the image. I use 
the ImageToVTKImageFilter to connect ITK with VTK. Displaying 2D images 
(a single slice of the whole image) works, but i dont know how to 
display the 3D volume.

For reference, I tried to change these examples to work with the 
connector type:
http://itk.org/Wiki/ITK/Examples/ImageProcessing/MinimumMaximumImageCalculator 

http://www.vtk.org/Wiki/VTK/Examples/Cxx/Widgets/ImagePlaneWidget

Unfortunately, all I get is a empty render window.

Here's my code:
http://pastebin.com/p2YyUirp

If I remove planeWidget->SetInputData(con->GetOutput());
from line 36, line 50 throws errors, so that a single empty window is 
displayed.

I tried working with three image planes, but that did not change that much:
http://pastebin.com/Sz6Etfu4

I get the data, if I'm using the 3 planes, but I hoped, that there will 
be some type of visible shape - compared to MATLAB's imshow for 3D images.

I hope that you can help me.

Regards
Imre
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From Victor.Poughon at cnes.fr  Mon Nov 30 08:26:37 2015
From: Victor.Poughon at cnes.fr (Poughon Victor)
Date: Mon, 30 Nov 2015 13:26:37 +0000
Subject: [ITK]  clang throws a lot of -Wunknown-attributes warning.
Message-ID: <3E55146A6A81B44A9CB69CAB65908CEA799D1B@TW-MBX-P01.cnesnet.ad.cnes.fr>

Hi Matt,

Here is a dashboard build with the warnings we are seeing with Rashad:
https://open.cdash.org/viewBuildError.php?type=1&buildid=4123272

Compiler:
clang version 3.5.0 (tags/RELEASE_350/final)
Target: x86_64-redhat-linux-gnu
Thread model: posix

CXX_FLAGS:
-Wall

OS:
Fedora release 22
Linux pc-christophe.cst.cnes.fr 4.2.3-200.fc22.x86_64 #1 SMP Thu Oct 8 03:23:55 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux

Apparently there could be a "!defined(__clang__)" missing in itkStaticAssert.h when testing for gcc.

Let me know if you need more info,

Victor Poughon

> Hi Rashad,
> 
> Thanks for discussing issue.
> 
> I have been using that compiler and have not come across those warnings.
> Are there any non-default flags or CMake options being used?
> 
> Could you please submit an Experimental build to the dashboard? ('ctest -D
> Experimental' from a clean build tree)
> 
> Thanks,
> Matt

From bill.lorensen at gmail.com  Mon Nov 30 12:31:42 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Mon, 30 Nov 2015 12:31:42 -0500
Subject: [ITK] [ITK-dev] Lingering Valgrind defect
Message-ID: <CADZJ4hNT8Bv8Uni06ts-=Ajo3gdKNyTxoaLic9iezzhnP8rn0A@mail.gmail.com>

Folks,

This gerrit commit in August
http://review.source.kitware.com/#/c/20081/

is causing this valgrind defect:
https://open.cdash.org/viewDynamicAnalysisFile.php?id=3624555

Related to the NotAlmostEquals access. If that is replaced with == the
defect gpoes away, but the test fails.

If I understood how those new functions work, I might have been able
to give a solution.

Bill
_______________________________________________
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From bill.lorensen at gmail.com  Mon Nov 30 13:36:39 2015
From: bill.lorensen at gmail.com (Bill Lorensen)
Date: Mon, 30 Nov 2015 13:36:39 -0500
Subject: [ITK] [ITK-dev] Lingering Valgrind defect
In-Reply-To: <CADZJ4hNT8Bv8Uni06ts-=Ajo3gdKNyTxoaLic9iezzhnP8rn0A@mail.gmail.com>
References: <CADZJ4hNT8Bv8Uni06ts-=Ajo3gdKNyTxoaLic9iezzhnP8rn0A@mail.gmail.com>
Message-ID: <CADZJ4hNP24QUsT3u3E18jPOWtPhB3ohDNmUzyzATAr7t+A4KfA@mail.gmail.com>

If I change the it.Value() and it2.Value() to it.Get() and it2.Get(),
the defect goes away. Value() returns a reference. I suspect that the
new comparisons are somehow accessing too much memory.

I'll put a patch in with the replacement.

Bill

On Mon, Nov 30, 2015 at 12:31 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> Folks,
>
> This gerrit commit in August
> http://review.source.kitware.com/#/c/20081/
>
> is causing this valgrind defect:
> https://open.cdash.org/viewDynamicAnalysisFile.php?id=3624555
>
> Related to the NotAlmostEquals access. If that is replaced with == the
> defect gpoes away, but the test fails.
>
> If I understood how those new functions work, I might have been able
> to give a solution.
>
> Bill



-- 
Unpaid intern in BillsBasement at noware dot com
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From skalexander at gmail.com  Mon Nov 30 13:53:59 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Mon, 30 Nov 2015 18:53:59 +0000
Subject: [ITK] [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAPf2UMSqrPnbJfaVZ-Nsw=m0iw8rnPENLsD0x588ekJ7wHG7yw@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
 <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
 <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>
 <CAPf2UMSqrPnbJfaVZ-Nsw=m0iw8rnPENLsD0x588ekJ7wHG7yw@mail.gmail.com>
Message-ID: <CAJFNcCQr1F6QjqaC6MFDo66Y609JTzuiCPCHCN6JF0OaNfoB7g@mail.gmail.com>

Hi All,

I had hoped to be able to look at this over the weekend, but no such luck.
Is there somewhere useful I can help with it now?  Not sure what state we
are in (or what branch).

On Wed, 25 Nov 2015 at 16:41 D?enan Zuki? <dzenanz at gmail.com> wrote:

> It turns out that all the compile errors were occurring in WikiExamples. I
> solved all except one:
> ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
> file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
> 23, but it should be judging from the comment on that line.
>
> For the rest, I created a pull request:
> https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
>
> On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Perfect.  I'm under a deadline that is likely to eat the rest of the week
>> but if that clears up I'll try and jump in earlier.
>>
>> On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> OK I will work on it for an hour or two now, and I will make a branch
>>> and push it to Gerrit so whoever wants can pick up from there and keep
>>> updating it.
>>>
>>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
>>> wrote:
>>>
>>>> Makes sense.  At this point I am unlikely to have time to look at this
>>>> until Saturday, but have hopes for a few free hours there.
>>>>
>>>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>
>>>>> Building git master from Nov 23rd with examples and testing enabled I
>>>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>>>> in fixing them?
>>>>>
>>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>>> skalexander at gmail.com> wrote:
>>>>>
>>>>>> Two of the three failures look like truncation issues (like
>>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>>>
>>>>>> The other (
>>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>>>  is less obvious.
>>>>>>
>>>>>> If I have time this evening I'll try and have a look at these.
>>>>>>
>>>>>> Is your standard test build in 32 bit ?  That might explain the
>>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>>> why 2015 would trigger but not 2013.
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>>> matt.mccormick at kitware.com> wrote:
>>>>>>
>>>>>>> Ah, cool!  Here:
>>>>>>>
>>>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>>
>>>>>>> Could you please look into the test failures?
>>>>>>>
>>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Matt
>>>>>>>
>>>>>>>
>>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>>> skalexander at gmail.com> wrote:
>>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>>>> SIMON-LAP,
>>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>>> one).  VS2013
>>>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks
>>>>>>> like a
>>>>>>> > truncation problem on the resuts.
>>>>>>> >
>>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>>> matt.mccormick at kitware.com>
>>>>>>> > wrote:
>>>>>>> >>
>>>>>>> >> Hi Simon,
>>>>>>> >>
>>>>>>> >> Thanks for testing.
>>>>>>> >>
>>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>>>>> >>
>>>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>>> >>
>>>>>>> >> Are there any different flags? Could you please submit an
>>>>>>> Experimental
>>>>>>> >> build?
>>>>>>> >>
>>>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>>> Submit -C
>>>>>>> >> Release
>>>>>>> >>
>>>>>>> >> from a fresh build tree.
>>>>>>> >>
>>>>>>> >> Thanks,
>>>>>>> >> Matt
>>>>>>> >>
>>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>>> skalexander at gmail.com>
>>>>>>> >> wrote:
>>>>>>> >> > Looks like a few problems with x64 build on visual studio 2015
>>>>>>> - do you
>>>>>>> >> > have
>>>>>>> >> > a test machine in this configuration?
>>>>>>> >> >
>>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>>> matt.mccormick at kitware.com>
>>>>>>> >> > wrote:
>>>>>>> >> >>
>>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>>>> announce
>>>>>>> >> >> that
>>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available
>>>>>>> for
>>>>>>> >> >> testing!
>>>>>>> >> >>
>>>>>>> >> >> Please take this opportunity to test the new features in the
>>>>>>> release
>>>>>>> >> >> candidate.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> To obtain the source code,
>>>>>>> >> >>
>>>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>>>> >> >>  cd ITK
>>>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>>>> >> >>
>>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> A few selected highlights for this release:
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>>> generation of
>>>>>>> >> >> meshes
>>>>>>> >> >> from binary segmentation images, and the
>>>>>>> AnisotropicDiffusionLBR module
>>>>>>> >> >> improved edge-preserving smoothing.
>>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>>> continuous
>>>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>>>> for your
>>>>>>> >> >> C++
>>>>>>> >> >> algorithms.
>>>>>>> >> >> * Python wrapping, including Python 3, builds faster with a
>>>>>>> more
>>>>>>> >> >> standard
>>>>>>> >> >> installation
>>>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations
>>>>>>> on
>>>>>>> >> >> itk::VariableLengthVector?s
>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>> >> >> * Module dependencies can now be specified as public / private
>>>>>>> /
>>>>>>> >> >> compile /
>>>>>>> >> >> test
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Please test the release candidate and share your experiences
>>>>>>> on the
>>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>>>> module
>>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>>> dependencies for
>>>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>>>> command.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>>>> performs
>>>>>>> >> >> on
>>>>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>>>>> with:
>>>>>>> >> >>
>>>>>>> >> >>   mkdir ../ITK-build
>>>>>>> >> >>   cd ../ITK-build
>>>>>>> >> >>   cmake ../ITK
>>>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>>> Submit
>>>>>>> >> >>
>>>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>>>> command.
>>>>>>> >> >>
>>>>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>>>>> Testing
>>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>>>> release.
>>>>>>> >> >> We
>>>>>>> >> >> would especially like to recognize the new contributors:
>>>>>>> Mikhail
>>>>>>> >> >> Isakov,
>>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood,
>>>>>>> Seun
>>>>>>> >> >> Odutola,
>>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>>> Williamson,
>>>>>>> >> >> Luc
>>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>>> >> >>
>>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> New Features
>>>>>>> >> >> ---------------------
>>>>>>> >> >>
>>>>>>> >> >> Wrapping improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Python 3 supported
>>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>>>> directory in
>>>>>>> >> >> the
>>>>>>> >> >> ?itk? package
>>>>>>> >> >> * Wrapping package size is decreased
>>>>>>> >> >> * Better package portability on Mac OSX
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> New Remote Modules
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Cuberille
>>>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>>>>> >> >>    * Web browser reproducibility:
>>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Core Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>>> source tree
>>>>>>> >> >> and
>>>>>>> >> >> on GitHub
>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>>>> >> >> * New utilities in itk::Math:
>>>>>>> >> >>    * AlmostEquals
>>>>>>> >> >>    * NotAlmostEquals
>>>>>>> >> >>    * ExactlyEquals
>>>>>>> >> >>    * NotExactlyEquals
>>>>>>> >> >> * New itk::NumericTraits
>>>>>>> >> >>    * IsInteger
>>>>>>> >> >>    * IsSigned
>>>>>>> >> >> * Improved C++11 support
>>>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Filtering Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>>>> module
>>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>>> ITKImageFilterBase
>>>>>>> >> >> module
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Registration Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Build Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Module dependencies can now be specified as public / private
>>>>>>> /
>>>>>>> >> >> compile /
>>>>>>> >> >> test
>>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>>>> >> >> * Expat third party library is now name mangled
>>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>>>>> built
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Performance Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds
>>>>>>> members for
>>>>>>> >> >> metaprogramming
>>>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>>>> >> >>    * itk::mpl::EnableIf
>>>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>>>> >> >>    * itk::mpl::IsConvertible
>>>>>>> >> >>    * itk::mpl::IsNumber
>>>>>>> >> >>    * itk::mpl::IsSame
>>>>>>> >> >>    * itk::mpl::PromoteType
>>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Documentation Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>>> Examples
>>>>>>> >> >> * ITK Software Guide improvements
>>>>>>> >> >>    * How to use Python wrapping
>>>>>>> >> >>    * How to create an ITK module
>>>>>>> >> >>    * Improvements to segmentation examples
>>>>>>> >> >>    * Expanded Canny edge detection example
>>>>>>> >> >>    * Expanded tree container example
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Third Party Library Updates
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * FFTW updated to latest upstream
>>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>>> >> >> * Build with the latest VTK
>>>>>>> >> >> * PNG update to the latest upstream
>>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>>> >> >> * MINC updated to the latest upstream
>>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>>>>> >> >>
>>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Private copy constructors and operator= use
>>>>>>> ITK_DELETE_FUNCTION
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> * *Lots* of important bug fixes
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> * And much more! See details in the log below.
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>>> >> >> --------------------------------------------
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Abhishek Tiwari (1):
>>>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>>>> >> >>
>>>>>>> >> >> Adam Snyder (1):
>>>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>>>> >> >>
>>>>>>> >> >> Alexander Leinoff (6):
>>>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be
>>>>>>> resolved.
>>>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>>>> >> >> itkMath.h
>>>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>>>> Math::AlmostEquals
>>>>>>> >> >>      ENH: Updates fftw dependency
>>>>>>> >> >>
>>>>>>> >> >> Arnaud Gelas (5):
>>>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>>> >> >>      DOC: add doxgen documentation for
>>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>>> >> >>      ENH: add tests to exercise
>>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>>> >> >>
>>>>>>> >> >> Betsy McPhail (1):
>>>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>>>> >> >>
>>>>>>> >> >> Bill Hoffman (2):
>>>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>>>> >> >> installed.
>>>>>>> >> >>
>>>>>>> >> >> Bill Lorensen (4):
>>>>>>> >> >>      COMP: VTkGlue linker errors
>>>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>>>> >> >>      ENH: Better layout strategy
>>>>>>> >> >>
>>>>>>> >> >> Brad King (3):
>>>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and
>>>>>>> itksys_ios::*
>>>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and
>>>>>>> itksys_stl::*
>>>>>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>>>>>> project
>>>>>>> >> >>
>>>>>>> >> >> Bradley Lowekamp (31):
>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>> construction
>>>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>>>> initializer
>>>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>>>> >> >>      ENH: Adding initial update script from used libpng
>>>>>>> version.
>>>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged
>>>>>>> code
>>>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>>>> affine
>>>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>>>> >> >>      ENH: Update itkpng name mangling
>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>> ReferenceImage
>>>>>>> >> >> ivar
>>>>>>> >> >>      BUG: Increase tolerance for
>>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>>>> BSplineScatter
>>>>>>> >> >> change
>>>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>>>> >> >> ImageFilterBase
>>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>> construction
>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>> ReferenceImage
>>>>>>> >> >> ivar
>>>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>>>> MovingHistogram
>>>>>>> >> >> base
>>>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>>>> anonymous ns
>>>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>>>> Threshold
>>>>>>> >> >> range
>>>>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>>>> test
>>>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>>>> >> >>
>>>>>>> >> >> Davis Vigneault (7):
>>>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>>>> c++11
>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>> >> >>
>>>>>>> >> >> D?enan Zuki? (1):
>>>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>>>> >> >>
>>>>>>> >> >> Eugene Prilepin (1):
>>>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>>>> >> >>
>>>>>>> >> >> Floris Berendsen (1):
>>>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>>>> >> >>
>>>>>>> >> >> Hans Johnson (29):
>>>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>>>> >> >>
>>>>>>> >> >> Hyun Jae Kang (27):
>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>> VTK file
>>>>>>> >> >> header.
>>>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>>>> >> >> libraries
>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac
>>>>>>> OS X
>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>> VTK file
>>>>>>> >> >> header.
>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>>>> autological-compare
>>>>>>> >> >> warning.
>>>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>> messages
>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>> messages
>>>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>>>> function
>>>>>>> >> >>      ENH: Update the Report() function of
>>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>>>> itkResourceProbe
>>>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>>>> >> >>
>>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>>> >> >>      BUG: Fix compilation issues for
>>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>>> >> >>      BUG: Fix comparison issues for
>>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>>>> >> >>      ENH: Improve code coverage for
>>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>>> >> >>
>>>>>>> >> >> Julien Michel (1):
>>>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>>>> >> >> WarpImageFilter
>>>>>>> >> >>
>>>>>>> >> >> Junjie Bai (2):
>>>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>>>> LabelObject type
>>>>>>> >> >>
>>>>>>> >> >> KWSys Robot (4):
>>>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>>>> >> >>
>>>>>>> >> >> LIBPNG Upstream (2):
>>>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>>>> >> >>
>>>>>>> >> >> Laurentiu Nicola (2):
>>>>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>>> bouncing
>>>>>>> >> >>
>>>>>>> >> >> Luc Hermitte (8):
>>>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>>>> 1/...
>>>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>>>> >> >>
>>>>>>> >> >> Lucas Gandel (4):
>>>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>>> module.
>>>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>>>> Module
>>>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>>> >> >>
>>>>>>> >> >> Mathieu Malaterre (1):
>>>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>>>> >> >>
>>>>>>> >> >> Matthew McCormick (94):
>>>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>>>> itkCMakeConfigurationTest.
>>>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>> ConditionVariableNoThreads.
>>>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>>>> >> >> ImageToVTKImageFilter.
>>>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>>>> >> >> target_link_libraries.
>>>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with
>>>>>>> Emscripten-1.
>>>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>>>> AnisotropicDiffusionLBR.
>>>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>>>>>> 14.04.
>>>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja +
>>>>>>> MSVC.
>>>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>> >> >>      ENH: Add more progress information to
>>>>>>> IterativeClosestPoint2.
>>>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>>>> >> >>      BUG: ContinuousIndex should not be templated over
>>>>>>> TCoordRep.
>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>>>> ITKTransformMINC.
>>>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>>> >> >>      ENH: Add wrapping support for building modules externally.
>>>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>>>> externally.
>>>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>> ConditionVariableNoThreads.
>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument
>>>>>>> type.
>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>> sys.path
>>>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so
>>>>>>> it gets
>>>>>>> >> >> installed."
>>>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>>>> LabelMapTypes"
>>>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>>>> advanced.
>>>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap
>>>>>>> cannot have
>>>>>>> >> >> override.
>>>>>>> >> >>      COMP: Add wrapping for
>>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>>>> >> >>      ENH: Remove CMake version check in
>>>>>>> ITKModuleHeaderTest.cmake
>>>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>>>>>> found.
>>>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>>>> detection.
>>>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>>> expression
>>>>>>> >> >> warning.
>>>>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>>>> >> >>      STYLE: Improve namespace bracket style in
>>>>>>> itkIsConvertible.
>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>>>> >> >>      BUG: Update Python package installation locations.
>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module
>>>>>>> test.
>>>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>>>>> >> >>
>>>>>>> >> >> Michka Popoff (9):
>>>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>> sys.path
>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>> wrapping
>>>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>>> >> >> ImageFilterBase
>>>>>>> >> >> module
>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>> wrapping
>>>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>>>> >> >>
>>>>>>> >> >> Mikhail Isakov (1):
>>>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>>> baseline image
>>>>>>> >> >>
>>>>>>> >> >> Nick Tustison (5):
>>>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>>>> strategy.
>>>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>>>> >> >>
>>>>>>> >> >> Olivier Commowick (3):
>>>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>>>>> eigen
>>>>>>> >> >> system
>>>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken
>>>>>>> from pythag
>>>>>>> >> >> from V3P)
>>>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>>>> >> >>
>>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>>>> constructor
>>>>>>> >> >> from
>>>>>>> >> >> images.
>>>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>>>> FlatStructuringElement.
>>>>>>> >> >>
>>>>>>> >> >> Seun Odutola (1):
>>>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>>>> renamed
>>>>>>> >> >> check
>>>>>>> >> >> to Check
>>>>>>> >> >>
>>>>>>> >> >> Shawn Waldon (1):
>>>>>>> >> >>      COMP: Set target OS X version in environment for tools
>>>>>>> using
>>>>>>> >> >> compiler
>>>>>>> >> >>
>>>>>>> >> >> Simon Alexander (1):
>>>>>>> >> >>      BUG: incorrect closest point computation
>>>>>>> >> >>
>>>>>>> >> >> Tobias Wood (2):
>>>>>>> >> >>      BUG: LBFGSB was printing messages even with debug
>>>>>>> switched off.
>>>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>>>> >> >>
>>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>>>>> >> >> Transform
>>>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>>>> >> >>      COMP: Update MINC CMake code
>>>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>>>> >> >>
>>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>>>> >> >>
>>>>>>> >> >> Zach Williamson (10):
>>>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>>>> >> >>      COMP: Add a missing link to Review module
>>>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>>>> GPUPDEDeformableRegistration
>>>>>>> >> >>      ENH: Use new linking system macros
>>>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>>>> directories
>>>>>>> >> >>      COMP: Recover missing dependencies
>>>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> -----------------------------------------------------
>>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>>> >> >> _____________________________________
>>>>>>> >> >> Powered by www.kitware.com
>>>>>>> >> >>
>>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>>> >> >>
>>>>>>> >> >> Kitware offers ITK Training Courses, for more information
>>>>>>> visit:
>>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>>> >> >>
>>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>> >> >>
>>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>>>>
>>>>>
>>>>>> Powered by www.kitware.com
>>>>>>
>>>>>> Visit other Kitware open-source projects at
>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>
>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>
>>>>> http://kitware.com/products/protraining.php
>>>>>
>>>>>
>>>>>>
>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>
>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>
>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>>
>>>>>>
>>>>>
>>>
>
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_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-developers

From skalexander at gmail.com  Mon Nov 30 13:53:59 2015
From: skalexander at gmail.com (Simon Alexander)
Date: Mon, 30 Nov 2015 18:53:59 +0000
Subject: [ITK] [ITK-users] [ITK-dev] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAPf2UMSqrPnbJfaVZ-Nsw=m0iw8rnPENLsD0x588ekJ7wHG7yw@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
 <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
 <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>
 <CAPf2UMSqrPnbJfaVZ-Nsw=m0iw8rnPENLsD0x588ekJ7wHG7yw@mail.gmail.com>
Message-ID: <CAJFNcCQr1F6QjqaC6MFDo66Y609JTzuiCPCHCN6JF0OaNfoB7g@mail.gmail.com>

Hi All,

I had hoped to be able to look at this over the weekend, but no such luck.
Is there somewhere useful I can help with it now?  Not sure what state we
are in (or what branch).

On Wed, 25 Nov 2015 at 16:41 D?enan Zuki? <dzenanz at gmail.com> wrote:

> It turns out that all the compile errors were occurring in WikiExamples. I
> solved all except one:
> ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
> file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
> 23, but it should be judging from the comment on that line.
>
> For the rest, I created a pull request:
> https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
>
> On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Perfect.  I'm under a deadline that is likely to eat the rest of the week
>> but if that clears up I'll try and jump in earlier.
>>
>> On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> OK I will work on it for an hour or two now, and I will make a branch
>>> and push it to Gerrit so whoever wants can pick up from there and keep
>>> updating it.
>>>
>>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
>>> wrote:
>>>
>>>> Makes sense.  At this point I am unlikely to have time to look at this
>>>> until Saturday, but have hopes for a few free hours there.
>>>>
>>>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>
>>>>> Building git master from Nov 23rd with examples and testing enabled I
>>>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>>>> in fixing them?
>>>>>
>>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>>> skalexander at gmail.com> wrote:
>>>>>
>>>>>> Two of the three failures look like truncation issues (like
>>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>>>
>>>>>> The other (
>>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>>>  is less obvious.
>>>>>>
>>>>>> If I have time this evening I'll try and have a look at these.
>>>>>>
>>>>>> Is your standard test build in 32 bit ?  That might explain the
>>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>>> why 2015 would trigger but not 2013.
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>>> matt.mccormick at kitware.com> wrote:
>>>>>>
>>>>>>> Ah, cool!  Here:
>>>>>>>
>>>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>>
>>>>>>> Could you please look into the test failures?
>>>>>>>
>>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Matt
>>>>>>>
>>>>>>>
>>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>>> skalexander at gmail.com> wrote:
>>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>>>> SIMON-LAP,
>>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>>> one).  VS2013
>>>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks
>>>>>>> like a
>>>>>>> > truncation problem on the resuts.
>>>>>>> >
>>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>>> matt.mccormick at kitware.com>
>>>>>>> > wrote:
>>>>>>> >>
>>>>>>> >> Hi Simon,
>>>>>>> >>
>>>>>>> >> Thanks for testing.
>>>>>>> >>
>>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>>>>> >>
>>>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>>> >>
>>>>>>> >> Are there any different flags? Could you please submit an
>>>>>>> Experimental
>>>>>>> >> build?
>>>>>>> >>
>>>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>>> Submit -C
>>>>>>> >> Release
>>>>>>> >>
>>>>>>> >> from a fresh build tree.
>>>>>>> >>
>>>>>>> >> Thanks,
>>>>>>> >> Matt
>>>>>>> >>
>>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>>> skalexander at gmail.com>
>>>>>>> >> wrote:
>>>>>>> >> > Looks like a few problems with x64 build on visual studio 2015
>>>>>>> - do you
>>>>>>> >> > have
>>>>>>> >> > a test machine in this configuration?
>>>>>>> >> >
>>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>>> matt.mccormick at kitware.com>
>>>>>>> >> > wrote:
>>>>>>> >> >>
>>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>>>> announce
>>>>>>> >> >> that
>>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available
>>>>>>> for
>>>>>>> >> >> testing!
>>>>>>> >> >>
>>>>>>> >> >> Please take this opportunity to test the new features in the
>>>>>>> release
>>>>>>> >> >> candidate.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> To obtain the source code,
>>>>>>> >> >>
>>>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>>>> >> >>  cd ITK
>>>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>>>> >> >>
>>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> A few selected highlights for this release:
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>>> generation of
>>>>>>> >> >> meshes
>>>>>>> >> >> from binary segmentation images, and the
>>>>>>> AnisotropicDiffusionLBR module
>>>>>>> >> >> improved edge-preserving smoothing.
>>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>>> continuous
>>>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>>>> for your
>>>>>>> >> >> C++
>>>>>>> >> >> algorithms.
>>>>>>> >> >> * Python wrapping, including Python 3, builds faster with a
>>>>>>> more
>>>>>>> >> >> standard
>>>>>>> >> >> installation
>>>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations
>>>>>>> on
>>>>>>> >> >> itk::VariableLengthVector?s
>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>> >> >> * Module dependencies can now be specified as public / private
>>>>>>> /
>>>>>>> >> >> compile /
>>>>>>> >> >> test
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Please test the release candidate and share your experiences
>>>>>>> on the
>>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>>>> module
>>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>>> dependencies for
>>>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>>>> command.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>>>> performs
>>>>>>> >> >> on
>>>>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>>>>> with:
>>>>>>> >> >>
>>>>>>> >> >>   mkdir ../ITK-build
>>>>>>> >> >>   cd ../ITK-build
>>>>>>> >> >>   cmake ../ITK
>>>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>>> Submit
>>>>>>> >> >>
>>>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>>>> command.
>>>>>>> >> >>
>>>>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>>>>> Testing
>>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>>>> release.
>>>>>>> >> >> We
>>>>>>> >> >> would especially like to recognize the new contributors:
>>>>>>> Mikhail
>>>>>>> >> >> Isakov,
>>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood,
>>>>>>> Seun
>>>>>>> >> >> Odutola,
>>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>>> Williamson,
>>>>>>> >> >> Luc
>>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>>> >> >>
>>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> New Features
>>>>>>> >> >> ---------------------
>>>>>>> >> >>
>>>>>>> >> >> Wrapping improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Python 3 supported
>>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>>>> directory in
>>>>>>> >> >> the
>>>>>>> >> >> ?itk? package
>>>>>>> >> >> * Wrapping package size is decreased
>>>>>>> >> >> * Better package portability on Mac OSX
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> New Remote Modules
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Cuberille
>>>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>>> >> >>    * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>>>>> >> >>    * Web browser reproducibility:
>>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Core Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>>> source tree
>>>>>>> >> >> and
>>>>>>> >> >> on GitHub
>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>>>> >> >> * New utilities in itk::Math:
>>>>>>> >> >>    * AlmostEquals
>>>>>>> >> >>    * NotAlmostEquals
>>>>>>> >> >>    * ExactlyEquals
>>>>>>> >> >>    * NotExactlyEquals
>>>>>>> >> >> * New itk::NumericTraits
>>>>>>> >> >>    * IsInteger
>>>>>>> >> >>    * IsSigned
>>>>>>> >> >> * Improved C++11 support
>>>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Filtering Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>>>> module
>>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>>> ITKImageFilterBase
>>>>>>> >> >> module
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Registration Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Build Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Module dependencies can now be specified as public / private
>>>>>>> /
>>>>>>> >> >> compile /
>>>>>>> >> >> test
>>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>>>> >> >> * Expat third party library is now name mangled
>>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>>>>> built
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Performance Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds
>>>>>>> members for
>>>>>>> >> >> metaprogramming
>>>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>>>> >> >>    * itk::mpl::EnableIf
>>>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>>>> >> >>    * itk::mpl::IsConvertible
>>>>>>> >> >>    * itk::mpl::IsNumber
>>>>>>> >> >>    * itk::mpl::IsSame
>>>>>>> >> >>    * itk::mpl::PromoteType
>>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Documentation Improvements
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>>> Examples
>>>>>>> >> >> * ITK Software Guide improvements
>>>>>>> >> >>    * How to use Python wrapping
>>>>>>> >> >>    * How to create an ITK module
>>>>>>> >> >>    * Improvements to segmentation examples
>>>>>>> >> >>    * Expanded Canny edge detection example
>>>>>>> >> >>    * Expanded tree container example
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Third Party Library Updates
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * FFTW updated to latest upstream
>>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>>> >> >> * Build with the latest VTK
>>>>>>> >> >> * PNG update to the latest upstream
>>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>>> >> >> * MINC updated to the latest upstream
>>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>>>>> >> >>
>>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >> * Private copy constructors and operator= use
>>>>>>> ITK_DELETE_FUNCTION
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> * *Lots* of important bug fixes
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> * And much more! See details in the log below.
>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>>> >> >> --------------------------------------------
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> Abhishek Tiwari (1):
>>>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>>>> >> >>
>>>>>>> >> >> Adam Snyder (1):
>>>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>>>> >> >>
>>>>>>> >> >> Alexander Leinoff (6):
>>>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be
>>>>>>> resolved.
>>>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>>>> >> >> itkMath.h
>>>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>>>> Math::AlmostEquals
>>>>>>> >> >>      ENH: Updates fftw dependency
>>>>>>> >> >>
>>>>>>> >> >> Arnaud Gelas (5):
>>>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>>> >> >>      DOC: add doxgen documentation for
>>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>>> >> >>      ENH: add tests to exercise
>>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>>> >> >>
>>>>>>> >> >> Betsy McPhail (1):
>>>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>>>> >> >>
>>>>>>> >> >> Bill Hoffman (2):
>>>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>>>> >> >> installed.
>>>>>>> >> >>
>>>>>>> >> >> Bill Lorensen (4):
>>>>>>> >> >>      COMP: VTkGlue linker errors
>>>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>>>> >> >>      ENH: Better layout strategy
>>>>>>> >> >>
>>>>>>> >> >> Brad King (3):
>>>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and
>>>>>>> itksys_ios::*
>>>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and
>>>>>>> itksys_stl::*
>>>>>>> >> >>      ENH: Update CMake Policy settings in Testing/TestExternal
>>>>>>> project
>>>>>>> >> >>
>>>>>>> >> >> Bradley Lowekamp (31):
>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>> construction
>>>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>>>> initializer
>>>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>>>> >> >>      ENH: Adding initial update script from used libpng
>>>>>>> version.
>>>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged
>>>>>>> code
>>>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>>>> affine
>>>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>>>> >> >>      ENH: Update itkpng name mangling
>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>> ReferenceImage
>>>>>>> >> >> ivar
>>>>>>> >> >>      BUG: Increase tolerance for
>>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>>>> BSplineScatter
>>>>>>> >> >> change
>>>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>>>> >> >> ImageFilterBase
>>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>> construction
>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>> ReferenceImage
>>>>>>> >> >> ivar
>>>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>>>> MovingHistogram
>>>>>>> >> >> base
>>>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>>>> anonymous ns
>>>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>>>> Threshold
>>>>>>> >> >> range
>>>>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>>>> test
>>>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>>>> >> >>
>>>>>>> >> >> Davis Vigneault (7):
>>>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>>>> c++11
>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>> >> >>
>>>>>>> >> >> D?enan Zuki? (1):
>>>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>>>> >> >>
>>>>>>> >> >> Eugene Prilepin (1):
>>>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>>>> >> >>
>>>>>>> >> >> Floris Berendsen (1):
>>>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>>>> >> >>
>>>>>>> >> >> Hans Johnson (29):
>>>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>>>> >> >>
>>>>>>> >> >> Hyun Jae Kang (27):
>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>> VTK file
>>>>>>> >> >> header.
>>>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>>>> >> >> libraries
>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac
>>>>>>> OS X
>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>> VTK file
>>>>>>> >> >> header.
>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>>>> autological-compare
>>>>>>> >> >> warning.
>>>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>> messages
>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>> messages
>>>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical data
>>>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>>>> function
>>>>>>> >> >>      ENH: Update the Report() function of
>>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>>>> itkResourceProbe
>>>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>>>> >> >>
>>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>>> >> >>      BUG: Fix compilation issues for
>>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>>> >> >>      BUG: Fix comparison issues for
>>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>>>> >> >>      ENH: Improve code coverage for
>>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>>> >> >>
>>>>>>> >> >> Julien Michel (1):
>>>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>>>> >> >> WarpImageFilter
>>>>>>> >> >>
>>>>>>> >> >> Junjie Bai (2):
>>>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>>>> LabelObject type
>>>>>>> >> >>
>>>>>>> >> >> KWSys Robot (4):
>>>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>>>> >> >>
>>>>>>> >> >> LIBPNG Upstream (2):
>>>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>>>> >> >>
>>>>>>> >> >> Laurentiu Nicola (2):
>>>>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>>> bouncing
>>>>>>> >> >>
>>>>>>> >> >> Luc Hermitte (8):
>>>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>>>> 1/...
>>>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>>>> >> >>
>>>>>>> >> >> Lucas Gandel (4):
>>>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>>> module.
>>>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>>>> Module
>>>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>>> >> >>
>>>>>>> >> >> Mathieu Malaterre (1):
>>>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>>>> >> >>
>>>>>>> >> >> Matthew McCormick (94):
>>>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>>>> itkCMakeConfigurationTest.
>>>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>> ConditionVariableNoThreads.
>>>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>>>> >> >> ImageToVTKImageFilter.
>>>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>>>> >> >> target_link_libraries.
>>>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with
>>>>>>> Emscripten-1.
>>>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>>>> AnisotropicDiffusionLBR.
>>>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Linux.
>>>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>>>> >> >>      COMP: Disable the gold linker for static builds on Ubuntu
>>>>>>> 14.04.
>>>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja +
>>>>>>> MSVC.
>>>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>> >> >>      ENH: Add more progress information to
>>>>>>> IterativeClosestPoint2.
>>>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>>>> >> >>      BUG: ContinuousIndex should not be templated over
>>>>>>> TCoordRep.
>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>>>> ITKTransformMINC.
>>>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>>> >> >>      ENH: Add wrapping support for building modules externally.
>>>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>>>> externally.
>>>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>> ConditionVariableNoThreads.
>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument
>>>>>>> type.
>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>> sys.path
>>>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so
>>>>>>> it gets
>>>>>>> >> >> installed."
>>>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>>>> LabelMapTypes"
>>>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>>>> advanced.
>>>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap
>>>>>>> cannot have
>>>>>>> >> >> override.
>>>>>>> >> >>      COMP: Add wrapping for
>>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>>>> >> >>      ENH: Remove CMake version check in
>>>>>>> ITKModuleHeaderTest.cmake
>>>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param not
>>>>>>> found.
>>>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>>>> detection.
>>>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>>> expression
>>>>>>> >> >> warning.
>>>>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>>>> >> >>      STYLE: Improve namespace bracket style in
>>>>>>> itkIsConvertible.
>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>>>> >> >>      BUG: Update Python package installation locations.
>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module
>>>>>>> test.
>>>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>>>> >> >>      COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>>>>> >> >>
>>>>>>> >> >> Michka Popoff (9):
>>>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>> sys.path
>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>> wrapping
>>>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>>> >> >> ImageFilterBase
>>>>>>> >> >> module
>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>> wrapping
>>>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>>>> >> >>
>>>>>>> >> >> Mikhail Isakov (1):
>>>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>>> baseline image
>>>>>>> >> >>
>>>>>>> >> >> Nick Tustison (5):
>>>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>>>> strategy.
>>>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>>>> >> >>
>>>>>>> >> >> Olivier Commowick (3):
>>>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>>>>> eigen
>>>>>>> >> >> system
>>>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken
>>>>>>> from pythag
>>>>>>> >> >> from V3P)
>>>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>>>> >> >>
>>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>>>> constructor
>>>>>>> >> >> from
>>>>>>> >> >> images.
>>>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>>>> FlatStructuringElement.
>>>>>>> >> >>
>>>>>>> >> >> Seun Odutola (1):
>>>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>>>> renamed
>>>>>>> >> >> check
>>>>>>> >> >> to Check
>>>>>>> >> >>
>>>>>>> >> >> Shawn Waldon (1):
>>>>>>> >> >>      COMP: Set target OS X version in environment for tools
>>>>>>> using
>>>>>>> >> >> compiler
>>>>>>> >> >>
>>>>>>> >> >> Simon Alexander (1):
>>>>>>> >> >>      BUG: incorrect closest point computation
>>>>>>> >> >>
>>>>>>> >> >> Tobias Wood (2):
>>>>>>> >> >>      BUG: LBFGSB was printing messages even with debug
>>>>>>> switched off.
>>>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>>>> >> >>
>>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>>>>> >> >> Transform
>>>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>>>> >> >>      COMP: Update MINC CMake code
>>>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>>>> >> >>
>>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>>>> >> >>
>>>>>>> >> >> Zach Williamson (10):
>>>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>>>> >> >>      COMP: Add a missing link to Review module
>>>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>>>> GPUPDEDeformableRegistration
>>>>>>> >> >>      ENH: Use new linking system macros
>>>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>>>> directories
>>>>>>> >> >>      COMP: Recover missing dependencies
>>>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >> -----------------------------------------------------
>>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> >> >>
>>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>>> >> >> _____________________________________
>>>>>>> >> >> Powered by www.kitware.com
>>>>>>> >> >>
>>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>>> >> >>
>>>>>>> >> >> Kitware offers ITK Training Courses, for more information
>>>>>>> visit:
>>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>>> >> >>
>>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>> >> >>
>>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>>>>
>>>>>
>>>>>> Powered by www.kitware.com
>>>>>>
>>>>>> Visit other Kitware open-source projects at
>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>
>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>
>>>>> http://kitware.com/products/protraining.php
>>>>>
>>>>>
>>>>>>
>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>
>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>
>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>>
>>>>>>
>>>>>
>>>
>
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Powered by www.kitware.com

Visit other Kitware open-source projects at
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Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
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From dzenanz at gmail.com  Mon Nov 30 14:00:26 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Mon, 30 Nov 2015 14:00:26 -0500
Subject: [ITK] [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAJFNcCQr1F6QjqaC6MFDo66Y609JTzuiCPCHCN6JF0OaNfoB7g@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
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Message-ID: <CAPf2UMT=7HT0=b6S_OPJhvZLFYsVsOMb_oWpP_+pOPOO9EsnrQ@mail.gmail.com>

Looking at the master branch is the right thing to do. I am not doing any
active development regarding this right now.

On Mon, Nov 30, 2015 at 1:53 PM, Simon Alexander <skalexander at gmail.com>
wrote:

> Hi All,
>
> I had hoped to be able to look at this over the weekend, but no such luck.
> Is there somewhere useful I can help with it now?  Not sure what state we
> are in (or what branch).
>
> On Wed, 25 Nov 2015 at 16:41 D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> It turns out that all the compile errors were occurring in WikiExamples.
>> I solved all except one:
>> ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
>> file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
>> 23, but it should be judging from the comment on that line.
>>
>> For the rest, I created a pull request:
>> https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
>>
>> On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>>
>>> Perfect.  I'm under a deadline that is likely to eat the rest of the
>>> week but if that clears up I'll try and jump in earlier.
>>>
>>> On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> OK I will work on it for an hour or two now, and I will make a branch
>>>> and push it to Gerrit so whoever wants can pick up from there and keep
>>>> updating it.
>>>>
>>>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com
>>>> > wrote:
>>>>
>>>>> Makes sense.  At this point I am unlikely to have time to look at this
>>>>> until Saturday, but have hopes for a few free hours there.
>>>>>
>>>>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>
>>>>>> Building git master from Nov 23rd with examples and testing enabled I
>>>>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>>>>> in fixing them?
>>>>>>
>>>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>>>> skalexander at gmail.com> wrote:
>>>>>>
>>>>>>> Two of the three failures look like truncation issues (like
>>>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>>>>
>>>>>>> The other (
>>>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>>>>  is less obvious.
>>>>>>>
>>>>>>> If I have time this evening I'll try and have a look at these.
>>>>>>>
>>>>>>> Is your standard test build in 32 bit ?  That might explain the
>>>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>>>> why 2015 would trigger but not 2013.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>>>> matt.mccormick at kitware.com> wrote:
>>>>>>>
>>>>>>>> Ah, cool!  Here:
>>>>>>>>
>>>>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>>>
>>>>>>>> Could you please look into the test failures?
>>>>>>>>
>>>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>> Matt
>>>>>>>>
>>>>>>>>
>>>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>>>> skalexander at gmail.com> wrote:
>>>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>>>>> SIMON-LAP,
>>>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>>>> one).  VS2013
>>>>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks
>>>>>>>> like a
>>>>>>>> > truncation problem on the resuts.
>>>>>>>> >
>>>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>> > wrote:
>>>>>>>> >>
>>>>>>>> >> Hi Simon,
>>>>>>>> >>
>>>>>>>> >> Thanks for testing.
>>>>>>>> >>
>>>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is
>>>>>>>> green:
>>>>>>>> >>
>>>>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>>>> >>
>>>>>>>> >> Are there any different flags? Could you please submit an
>>>>>>>> Experimental
>>>>>>>> >> build?
>>>>>>>> >>
>>>>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>>>> Submit -C
>>>>>>>> >> Release
>>>>>>>> >>
>>>>>>>> >> from a fresh build tree.
>>>>>>>> >>
>>>>>>>> >> Thanks,
>>>>>>>> >> Matt
>>>>>>>> >>
>>>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>>>> skalexander at gmail.com>
>>>>>>>> >> wrote:
>>>>>>>> >> > Looks like a few problems with x64 build on visual studio 2015
>>>>>>>> - do you
>>>>>>>> >> > have
>>>>>>>> >> > a test machine in this configuration?
>>>>>>>> >> >
>>>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>> >> > wrote:
>>>>>>>> >> >>
>>>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>>>>> announce
>>>>>>>> >> >> that
>>>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available
>>>>>>>> for
>>>>>>>> >> >> testing!
>>>>>>>> >> >>
>>>>>>>> >> >> Please take this opportunity to test the new features in the
>>>>>>>> release
>>>>>>>> >> >> candidate.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> To obtain the source code,
>>>>>>>> >> >>
>>>>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>>>>> >> >>  cd ITK
>>>>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>>>>> >> >>
>>>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> A few selected highlights for this release:
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>>>> generation of
>>>>>>>> >> >> meshes
>>>>>>>> >> >> from binary segmentation images, and the
>>>>>>>> AnisotropicDiffusionLBR module
>>>>>>>> >> >> improved edge-preserving smoothing.
>>>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>>>> continuous
>>>>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>>>>> for your
>>>>>>>> >> >> C++
>>>>>>>> >> >> algorithms.
>>>>>>>> >> >> * Python wrapping, including Python 3, builds faster with a
>>>>>>>> more
>>>>>>>> >> >> standard
>>>>>>>> >> >> installation
>>>>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations
>>>>>>>> on
>>>>>>>> >> >> itk::VariableLengthVector?s
>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>> private /
>>>>>>>> >> >> compile /
>>>>>>>> >> >> test
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Please test the release candidate and share your experiences
>>>>>>>> on the
>>>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>>>>> module
>>>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>>>> dependencies for
>>>>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>>>>> command.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>>>>> performs
>>>>>>>> >> >> on
>>>>>>>> >> >> your local build system, can be submitted to the dashboard
>>>>>>>> [2] with:
>>>>>>>> >> >>
>>>>>>>> >> >>   mkdir ../ITK-build
>>>>>>>> >> >>   cd ../ITK-build
>>>>>>>> >> >>   cmake ../ITK
>>>>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test
>>>>>>>> -T Submit
>>>>>>>> >> >>
>>>>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>>>>> command.
>>>>>>>> >> >>
>>>>>>>> >> >> Notify the mailing list if there are any unexpected
>>>>>>>> failures.  Testing
>>>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>>>>> release.
>>>>>>>> >> >> We
>>>>>>>> >> >> would especially like to recognize the new contributors:
>>>>>>>> Mikhail
>>>>>>>> >> >> Isakov,
>>>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood,
>>>>>>>> Seun
>>>>>>>> >> >> Odutola,
>>>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>>>> Williamson,
>>>>>>>> >> >> Luc
>>>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>>>> >> >>
>>>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> New Features
>>>>>>>> >> >> ---------------------
>>>>>>>> >> >>
>>>>>>>> >> >> Wrapping improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Python 3 supported
>>>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>>>>> directory in
>>>>>>>> >> >> the
>>>>>>>> >> >> ?itk? package
>>>>>>>> >> >> * Wrapping package size is decreased
>>>>>>>> >> >> * Better package portability on Mac OSX
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> New Remote Modules
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Cuberille
>>>>>>>> >> >>    * Insight Journal Article:
>>>>>>>> http://hdl.handle.net/10380/3186
>>>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>>>> >> >>    * Insight Journal Article:
>>>>>>>> http://hdl.handle.net/10380/3505
>>>>>>>> >> >>    * Web browser reproducibility:
>>>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Core Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>>>> source tree
>>>>>>>> >> >> and
>>>>>>>> >> >> on GitHub
>>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>>>>> >> >> * New utilities in itk::Math:
>>>>>>>> >> >>    * AlmostEquals
>>>>>>>> >> >>    * NotAlmostEquals
>>>>>>>> >> >>    * ExactlyEquals
>>>>>>>> >> >>    * NotExactlyEquals
>>>>>>>> >> >> * New itk::NumericTraits
>>>>>>>> >> >>    * IsInteger
>>>>>>>> >> >>    * IsSigned
>>>>>>>> >> >> * Improved C++11 support
>>>>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Filtering Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>>>>> module
>>>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>>>> ITKImageFilterBase
>>>>>>>> >> >> module
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Registration Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Build Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>> private /
>>>>>>>> >> >> compile /
>>>>>>>> >> >> test
>>>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>>>>> >> >> * Expat third party library is now name mangled
>>>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>>>> >> >> * KWStyle is automatically built and configured when tests
>>>>>>>> are built
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Performance Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds
>>>>>>>> members for
>>>>>>>> >> >> metaprogramming
>>>>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>>>>> >> >>    * itk::mpl::EnableIf
>>>>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>>>>> >> >>    * itk::mpl::IsConvertible
>>>>>>>> >> >>    * itk::mpl::IsNumber
>>>>>>>> >> >>    * itk::mpl::IsSame
>>>>>>>> >> >>    * itk::mpl::PromoteType
>>>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Documentation Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>>>> Examples
>>>>>>>> >> >> * ITK Software Guide improvements
>>>>>>>> >> >>    * How to use Python wrapping
>>>>>>>> >> >>    * How to create an ITK module
>>>>>>>> >> >>    * Improvements to segmentation examples
>>>>>>>> >> >>    * Expanded Canny edge detection example
>>>>>>>> >> >>    * Expanded tree container example
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Third Party Library Updates
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * FFTW updated to latest upstream
>>>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>>>> >> >> * Build with the latest VTK
>>>>>>>> >> >> * PNG update to the latest upstream
>>>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>>>> >> >> * MINC updated to the latest upstream
>>>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Style improvements -- ITK gets more stylish with every
>>>>>>>> release!
>>>>>>>> >> >>
>>>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Private copy constructors and operator= use
>>>>>>>> ITK_DELETE_FUNCTION
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> * *Lots* of important bug fixes
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> * And much more! See details in the log below.
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>>>> >> >> --------------------------------------------
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Abhishek Tiwari (1):
>>>>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>>>>> >> >>
>>>>>>>> >> >> Adam Snyder (1):
>>>>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>>>>> >> >>
>>>>>>>> >> >> Alexander Leinoff (6):
>>>>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be
>>>>>>>> resolved.
>>>>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>>>>> >> >> itkMath.h
>>>>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>>>>> Math::AlmostEquals
>>>>>>>> >> >>      ENH: Updates fftw dependency
>>>>>>>> >> >>
>>>>>>>> >> >> Arnaud Gelas (5):
>>>>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>>>> >> >>      DOC: add doxgen documentation for
>>>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>>>> >> >>      ENH: add tests to exercise
>>>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>>>> >> >>
>>>>>>>> >> >> Betsy McPhail (1):
>>>>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>>>>> >> >>
>>>>>>>> >> >> Bill Hoffman (2):
>>>>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>>>>> >> >> installed.
>>>>>>>> >> >>
>>>>>>>> >> >> Bill Lorensen (4):
>>>>>>>> >> >>      COMP: VTkGlue linker errors
>>>>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>>>>> >> >>      ENH: Better layout strategy
>>>>>>>> >> >>
>>>>>>>> >> >> Brad King (3):
>>>>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and
>>>>>>>> itksys_ios::*
>>>>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and
>>>>>>>> itksys_stl::*
>>>>>>>> >> >>      ENH: Update CMake Policy settings in
>>>>>>>> Testing/TestExternal project
>>>>>>>> >> >>
>>>>>>>> >> >> Bradley Lowekamp (31):
>>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>>> construction
>>>>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>>>>> initializer
>>>>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>>>>> >> >>      ENH: Adding initial update script from used libpng
>>>>>>>> version.
>>>>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged
>>>>>>>> code
>>>>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>>>>> affine
>>>>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>>>>> >> >>      ENH: Update itkpng name mangling
>>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>>> ReferenceImage
>>>>>>>> >> >> ivar
>>>>>>>> >> >>      BUG: Increase tolerance for
>>>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>>>>> BSplineScatter
>>>>>>>> >> >> change
>>>>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>>>>> >> >> ImageFilterBase
>>>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>>> construction
>>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>>> ReferenceImage
>>>>>>>> >> >> ivar
>>>>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>>>>> MovingHistogram
>>>>>>>> >> >> base
>>>>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>>>>> anonymous ns
>>>>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>>>>> Threshold
>>>>>>>> >> >> range
>>>>>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>>>>> test
>>>>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>>>>> >> >>
>>>>>>>> >> >> Davis Vigneault (7):
>>>>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>>>>> c++11
>>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>>> >> >>
>>>>>>>> >> >> D?enan Zuki? (1):
>>>>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>>>>> >> >>
>>>>>>>> >> >> Eugene Prilepin (1):
>>>>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>>>>> >> >>
>>>>>>>> >> >> Floris Berendsen (1):
>>>>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>>>>> >> >>
>>>>>>>> >> >> Hans Johnson (29):
>>>>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>>>>> >> >>
>>>>>>>> >> >> Hyun Jae Kang (27):
>>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>>> VTK file
>>>>>>>> >> >> header.
>>>>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>>>>> >> >> libraries
>>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac
>>>>>>>> OS X
>>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>>> VTK file
>>>>>>>> >> >> header.
>>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>>>>> autological-compare
>>>>>>>> >> >> warning.
>>>>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>>> messages
>>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>>> messages
>>>>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical
>>>>>>>> data
>>>>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>>>>> function
>>>>>>>> >> >>      ENH: Update the Report() function of
>>>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>>>>> itkResourceProbe
>>>>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>>>>> >> >>
>>>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>>>> >> >>      BUG: Fix compilation issues for
>>>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>>>> >> >>      BUG: Fix comparison issues for
>>>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>>>>> >> >>      ENH: Improve code coverage for
>>>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>>>> >> >>
>>>>>>>> >> >> Julien Michel (1):
>>>>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>>>>> >> >> WarpImageFilter
>>>>>>>> >> >>
>>>>>>>> >> >> Junjie Bai (2):
>>>>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>>>>> LabelObject type
>>>>>>>> >> >>
>>>>>>>> >> >> KWSys Robot (4):
>>>>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>>>>> >> >>
>>>>>>>> >> >> LIBPNG Upstream (2):
>>>>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>>>>> >> >>
>>>>>>>> >> >> Laurentiu Nicola (2):
>>>>>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>>>> bouncing
>>>>>>>> >> >>
>>>>>>>> >> >> Luc Hermitte (8):
>>>>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>>>>> 1/...
>>>>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>>>>> >> >>
>>>>>>>> >> >> Lucas Gandel (4):
>>>>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>>>> module.
>>>>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>>>>> Module
>>>>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>>>> >> >>
>>>>>>>> >> >> Mathieu Malaterre (1):
>>>>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>>>>> >> >>
>>>>>>>> >> >> Matthew McCormick (94):
>>>>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>>>>> itkCMakeConfigurationTest.
>>>>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>>> ConditionVariableNoThreads.
>>>>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>>>>> >> >> ImageToVTKImageFilter.
>>>>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>>>>> >> >> target_link_libraries.
>>>>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with
>>>>>>>> Emscripten-1.
>>>>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>>>>> AnisotropicDiffusionLBR.
>>>>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64
>>>>>>>> Linux.
>>>>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>>>>> >> >>      COMP: Disable the gold linker for static builds on
>>>>>>>> Ubuntu 14.04.
>>>>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja +
>>>>>>>> MSVC.
>>>>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>>> >> >>      ENH: Add more progress information to
>>>>>>>> IterativeClosestPoint2.
>>>>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>>>>> >> >>      BUG: ContinuousIndex should not be templated over
>>>>>>>> TCoordRep.
>>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with
>>>>>>>> ITK_WRAPPING_PARSER.
>>>>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>>>>> ITKTransformMINC.
>>>>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>>>> >> >>      ENH: Add wrapping support for building modules
>>>>>>>> externally.
>>>>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>>>>> externally.
>>>>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>>> ConditionVariableNoThreads.
>>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument
>>>>>>>> type.
>>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>> sys.path
>>>>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so
>>>>>>>> it gets
>>>>>>>> >> >> installed."
>>>>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>>>>> LabelMapTypes"
>>>>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>>>>> advanced.
>>>>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap
>>>>>>>> cannot have
>>>>>>>> >> >> override.
>>>>>>>> >> >>      COMP: Add wrapping for
>>>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>>>>> >> >>      ENH: Remove CMake version check in
>>>>>>>> ITKModuleHeaderTest.cmake
>>>>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param
>>>>>>>> not found.
>>>>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>>>>> detection.
>>>>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>>>> expression
>>>>>>>> >> >> warning.
>>>>>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>>>>> >> >>      STYLE: Improve namespace bracket style in
>>>>>>>> itkIsConvertible.
>>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>>>>> >> >>      BUG: Update Python package installation locations.
>>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module
>>>>>>>> test.
>>>>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>>>>> >> >>      COMP: ITKIOMINC has a public dependency on
>>>>>>>> ITKIOImageBase.
>>>>>>>> >> >>
>>>>>>>> >> >> Michka Popoff (9):
>>>>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>> sys.path
>>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>>> wrapping
>>>>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>>>> >> >> ImageFilterBase
>>>>>>>> >> >> module
>>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>>> wrapping
>>>>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>>>>> >> >>
>>>>>>>> >> >> Mikhail Isakov (1):
>>>>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>>>> baseline image
>>>>>>>> >> >>
>>>>>>>> >> >> Nick Tustison (5):
>>>>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>>>>> strategy.
>>>>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>>>>> >> >>
>>>>>>>> >> >> Olivier Commowick (3):
>>>>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt
>>>>>>>> VNL eigen
>>>>>>>> >> >> system
>>>>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken
>>>>>>>> from pythag
>>>>>>>> >> >> from V3P)
>>>>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>>>>> >> >>
>>>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>>>>> constructor
>>>>>>>> >> >> from
>>>>>>>> >> >> images.
>>>>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>>>>> FlatStructuringElement.
>>>>>>>> >> >>
>>>>>>>> >> >> Seun Odutola (1):
>>>>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>>>>> renamed
>>>>>>>> >> >> check
>>>>>>>> >> >> to Check
>>>>>>>> >> >>
>>>>>>>> >> >> Shawn Waldon (1):
>>>>>>>> >> >>      COMP: Set target OS X version in environment for tools
>>>>>>>> using
>>>>>>>> >> >> compiler
>>>>>>>> >> >>
>>>>>>>> >> >> Simon Alexander (1):
>>>>>>>> >> >>      BUG: incorrect closest point computation
>>>>>>>> >> >>
>>>>>>>> >> >> Tobias Wood (2):
>>>>>>>> >> >>      BUG: LBFGSB was printing messages even with debug
>>>>>>>> switched off.
>>>>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>>>>> >> >>
>>>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>>>>>> >> >> Transform
>>>>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>>>>> >> >>      COMP: Update MINC CMake code
>>>>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>>>>> >> >>
>>>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>>>>> >> >>
>>>>>>>> >> >> Zach Williamson (10):
>>>>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>>>>> >> >>      COMP: Add a missing link to Review module
>>>>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>>>>> GPUPDEDeformableRegistration
>>>>>>>> >> >>      ENH: Use new linking system macros
>>>>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>>>>> directories
>>>>>>>> >> >>      COMP: Recover missing dependencies
>>>>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> -----------------------------------------------------
>>>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>>>> >> >> _____________________________________
>>>>>>>> >> >> Powered by www.kitware.com
>>>>>>>> >> >>
>>>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>>>> >> >>
>>>>>>>> >> >> Kitware offers ITK Training Courses, for more information
>>>>>>>> visit:
>>>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>>>> >> >>
>>>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>> >> >>
>>>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>>
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>
>>>>>>
>>>>>>> Powered by www.kitware.com
>>>>>>>
>>>>>>> Visit other Kitware open-source projects at
>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>
>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>
>>>>>> http://kitware.com/products/protraining.php
>>>>>>
>>>>>>
>>>>>>>
>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>
>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>
>>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>>>
>>>>>>>
>>>>>>
>>>>
>>
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_______________________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
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From dzenanz at gmail.com  Mon Nov 30 14:00:26 2015
From: dzenanz at gmail.com (=?UTF-8?B?RMW+ZW5hbiBadWtpxIc=?=)
Date: Mon, 30 Nov 2015 14:00:26 -0500
Subject: [ITK] [ITK-users] [ITK-dev] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAJFNcCQr1F6QjqaC6MFDo66Y609JTzuiCPCHCN6JF0OaNfoB7g@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
 <CAPf2UMRke6KvaQRe42HCT0PUDDp2XaVrF0w7-HgYAW48bCxrPg@mail.gmail.com>
 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
 <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
 <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>
 <CAPf2UMSqrPnbJfaVZ-Nsw=m0iw8rnPENLsD0x588ekJ7wHG7yw@mail.gmail.com>
 <CAJFNcCQr1F6QjqaC6MFDo66Y609JTzuiCPCHCN6JF0OaNfoB7g@mail.gmail.com>
Message-ID: <CAPf2UMT=7HT0=b6S_OPJhvZLFYsVsOMb_oWpP_+pOPOO9EsnrQ@mail.gmail.com>

Looking at the master branch is the right thing to do. I am not doing any
active development regarding this right now.

On Mon, Nov 30, 2015 at 1:53 PM, Simon Alexander <skalexander at gmail.com>
wrote:

> Hi All,
>
> I had hoped to be able to look at this over the weekend, but no such luck.
> Is there somewhere useful I can help with it now?  Not sure what state we
> are in (or what branch).
>
> On Wed, 25 Nov 2015 at 16:41 D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> It turns out that all the compile errors were occurring in WikiExamples.
>> I solved all except one:
>> ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
>> file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
>> 23, but it should be judging from the comment on that line.
>>
>> For the rest, I created a pull request:
>> https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
>>
>> On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>>
>>> Perfect.  I'm under a deadline that is likely to eat the rest of the
>>> week but if that clears up I'll try and jump in earlier.
>>>
>>> On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> OK I will work on it for an hour or two now, and I will make a branch
>>>> and push it to Gerrit so whoever wants can pick up from there and keep
>>>> updating it.
>>>>
>>>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com
>>>> > wrote:
>>>>
>>>>> Makes sense.  At this point I am unlikely to have time to look at this
>>>>> until Saturday, but have hopes for a few free hours there.
>>>>>
>>>>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>
>>>>>> Building git master from Nov 23rd with examples and testing enabled I
>>>>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>>>>> in fixing them?
>>>>>>
>>>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>>>> skalexander at gmail.com> wrote:
>>>>>>
>>>>>>> Two of the three failures look like truncation issues (like
>>>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>>>>
>>>>>>> The other (
>>>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>>>>  is less obvious.
>>>>>>>
>>>>>>> If I have time this evening I'll try and have a look at these.
>>>>>>>
>>>>>>> Is your standard test build in 32 bit ?  That might explain the
>>>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>>>> why 2015 would trigger but not 2013.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>>>> matt.mccormick at kitware.com> wrote:
>>>>>>>
>>>>>>>> Ah, cool!  Here:
>>>>>>>>
>>>>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>>>
>>>>>>>> Could you please look into the test failures?
>>>>>>>>
>>>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>> Matt
>>>>>>>>
>>>>>>>>
>>>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>>>> skalexander at gmail.com> wrote:
>>>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>>>>> SIMON-LAP,
>>>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>>>> one).  VS2013
>>>>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks
>>>>>>>> like a
>>>>>>>> > truncation problem on the resuts.
>>>>>>>> >
>>>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>> > wrote:
>>>>>>>> >>
>>>>>>>> >> Hi Simon,
>>>>>>>> >>
>>>>>>>> >> Thanks for testing.
>>>>>>>> >>
>>>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is
>>>>>>>> green:
>>>>>>>> >>
>>>>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>>>> >>
>>>>>>>> >> Are there any different flags? Could you please submit an
>>>>>>>> Experimental
>>>>>>>> >> build?
>>>>>>>> >>
>>>>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>>>> Submit -C
>>>>>>>> >> Release
>>>>>>>> >>
>>>>>>>> >> from a fresh build tree.
>>>>>>>> >>
>>>>>>>> >> Thanks,
>>>>>>>> >> Matt
>>>>>>>> >>
>>>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>>>> skalexander at gmail.com>
>>>>>>>> >> wrote:
>>>>>>>> >> > Looks like a few problems with x64 build on visual studio 2015
>>>>>>>> - do you
>>>>>>>> >> > have
>>>>>>>> >> > a test machine in this configuration?
>>>>>>>> >> >
>>>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>> >> > wrote:
>>>>>>>> >> >>
>>>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>>>>> announce
>>>>>>>> >> >> that
>>>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available
>>>>>>>> for
>>>>>>>> >> >> testing!
>>>>>>>> >> >>
>>>>>>>> >> >> Please take this opportunity to test the new features in the
>>>>>>>> release
>>>>>>>> >> >> candidate.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> To obtain the source code,
>>>>>>>> >> >>
>>>>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>>>>> >> >>  cd ITK
>>>>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>>>>> >> >>
>>>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> A few selected highlights for this release:
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>>>> generation of
>>>>>>>> >> >> meshes
>>>>>>>> >> >> from binary segmentation images, and the
>>>>>>>> AnisotropicDiffusionLBR module
>>>>>>>> >> >> improved edge-preserving smoothing.
>>>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>>>> continuous
>>>>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>>>>> for your
>>>>>>>> >> >> C++
>>>>>>>> >> >> algorithms.
>>>>>>>> >> >> * Python wrapping, including Python 3, builds faster with a
>>>>>>>> more
>>>>>>>> >> >> standard
>>>>>>>> >> >> installation
>>>>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations
>>>>>>>> on
>>>>>>>> >> >> itk::VariableLengthVector?s
>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>> private /
>>>>>>>> >> >> compile /
>>>>>>>> >> >> test
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Please test the release candidate and share your experiences
>>>>>>>> on the
>>>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>>>>> module
>>>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>>>> dependencies for
>>>>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>>>>> command.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>>>>> performs
>>>>>>>> >> >> on
>>>>>>>> >> >> your local build system, can be submitted to the dashboard
>>>>>>>> [2] with:
>>>>>>>> >> >>
>>>>>>>> >> >>   mkdir ../ITK-build
>>>>>>>> >> >>   cd ../ITK-build
>>>>>>>> >> >>   cmake ../ITK
>>>>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test
>>>>>>>> -T Submit
>>>>>>>> >> >>
>>>>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>>>>> command.
>>>>>>>> >> >>
>>>>>>>> >> >> Notify the mailing list if there are any unexpected
>>>>>>>> failures.  Testing
>>>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>>>>> release.
>>>>>>>> >> >> We
>>>>>>>> >> >> would especially like to recognize the new contributors:
>>>>>>>> Mikhail
>>>>>>>> >> >> Isakov,
>>>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood,
>>>>>>>> Seun
>>>>>>>> >> >> Odutola,
>>>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>>>> Williamson,
>>>>>>>> >> >> Luc
>>>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>>>> >> >>
>>>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> New Features
>>>>>>>> >> >> ---------------------
>>>>>>>> >> >>
>>>>>>>> >> >> Wrapping improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Python 3 supported
>>>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>>>>> directory in
>>>>>>>> >> >> the
>>>>>>>> >> >> ?itk? package
>>>>>>>> >> >> * Wrapping package size is decreased
>>>>>>>> >> >> * Better package portability on Mac OSX
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> New Remote Modules
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Cuberille
>>>>>>>> >> >>    * Insight Journal Article:
>>>>>>>> http://hdl.handle.net/10380/3186
>>>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>>>> >> >>    * Insight Journal Article:
>>>>>>>> http://hdl.handle.net/10380/3505
>>>>>>>> >> >>    * Web browser reproducibility:
>>>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Core Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>>>> source tree
>>>>>>>> >> >> and
>>>>>>>> >> >> on GitHub
>>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>>>>> >> >> * New utilities in itk::Math:
>>>>>>>> >> >>    * AlmostEquals
>>>>>>>> >> >>    * NotAlmostEquals
>>>>>>>> >> >>    * ExactlyEquals
>>>>>>>> >> >>    * NotExactlyEquals
>>>>>>>> >> >> * New itk::NumericTraits
>>>>>>>> >> >>    * IsInteger
>>>>>>>> >> >>    * IsSigned
>>>>>>>> >> >> * Improved C++11 support
>>>>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Filtering Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>>>>> module
>>>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>>>> ITKImageFilterBase
>>>>>>>> >> >> module
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Registration Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Build Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>> private /
>>>>>>>> >> >> compile /
>>>>>>>> >> >> test
>>>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>>>>> >> >> * Expat third party library is now name mangled
>>>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>>>> >> >> * KWStyle is automatically built and configured when tests
>>>>>>>> are built
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Performance Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds
>>>>>>>> members for
>>>>>>>> >> >> metaprogramming
>>>>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>>>>> >> >>    * itk::mpl::EnableIf
>>>>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>>>>> >> >>    * itk::mpl::IsConvertible
>>>>>>>> >> >>    * itk::mpl::IsNumber
>>>>>>>> >> >>    * itk::mpl::IsSame
>>>>>>>> >> >>    * itk::mpl::PromoteType
>>>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Documentation Improvements
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>>>> Examples
>>>>>>>> >> >> * ITK Software Guide improvements
>>>>>>>> >> >>    * How to use Python wrapping
>>>>>>>> >> >>    * How to create an ITK module
>>>>>>>> >> >>    * Improvements to segmentation examples
>>>>>>>> >> >>    * Expanded Canny edge detection example
>>>>>>>> >> >>    * Expanded tree container example
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Third Party Library Updates
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * FFTW updated to latest upstream
>>>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>>>> >> >> * Build with the latest VTK
>>>>>>>> >> >> * PNG update to the latest upstream
>>>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>>>> >> >> * MINC updated to the latest upstream
>>>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Style improvements -- ITK gets more stylish with every
>>>>>>>> release!
>>>>>>>> >> >>
>>>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >> * Private copy constructors and operator= use
>>>>>>>> ITK_DELETE_FUNCTION
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> * *Lots* of important bug fixes
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> * And much more! See details in the log below.
>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>>>> >> >> --------------------------------------------
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> Abhishek Tiwari (1):
>>>>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>>>>> >> >>
>>>>>>>> >> >> Adam Snyder (1):
>>>>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>>>>> >> >>
>>>>>>>> >> >> Alexander Leinoff (6):
>>>>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be
>>>>>>>> resolved.
>>>>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>>>>> >> >> itkMath.h
>>>>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>>>>> Math::AlmostEquals
>>>>>>>> >> >>      ENH: Updates fftw dependency
>>>>>>>> >> >>
>>>>>>>> >> >> Arnaud Gelas (5):
>>>>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>>>> >> >>      DOC: add doxgen documentation for
>>>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>>>> >> >>      ENH: add tests to exercise
>>>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>>>> >> >>
>>>>>>>> >> >> Betsy McPhail (1):
>>>>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>>>>> >> >>
>>>>>>>> >> >> Bill Hoffman (2):
>>>>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>>>>> >> >> installed.
>>>>>>>> >> >>
>>>>>>>> >> >> Bill Lorensen (4):
>>>>>>>> >> >>      COMP: VTkGlue linker errors
>>>>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>>>>> >> >>      ENH: Better layout strategy
>>>>>>>> >> >>
>>>>>>>> >> >> Brad King (3):
>>>>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and
>>>>>>>> itksys_ios::*
>>>>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and
>>>>>>>> itksys_stl::*
>>>>>>>> >> >>      ENH: Update CMake Policy settings in
>>>>>>>> Testing/TestExternal project
>>>>>>>> >> >>
>>>>>>>> >> >> Bradley Lowekamp (31):
>>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>>> construction
>>>>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>>>>> initializer
>>>>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>>>>> >> >>      ENH: Adding initial update script from used libpng
>>>>>>>> version.
>>>>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged
>>>>>>>> code
>>>>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>>>>> affine
>>>>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>>>>> >> >>      ENH: Update itkpng name mangling
>>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>>> ReferenceImage
>>>>>>>> >> >> ivar
>>>>>>>> >> >>      BUG: Increase tolerance for
>>>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>>>>> BSplineScatter
>>>>>>>> >> >> change
>>>>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>>>>> >> >> ImageFilterBase
>>>>>>>> >> >>      BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>>> construction
>>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>>> ReferenceImage
>>>>>>>> >> >> ivar
>>>>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>>>>> MovingHistogram
>>>>>>>> >> >> base
>>>>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>>>>> anonymous ns
>>>>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>>>>> Threshold
>>>>>>>> >> >> range
>>>>>>>> >> >>      BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>>>>> test
>>>>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>>>>> >> >>
>>>>>>>> >> >> Davis Vigneault (7):
>>>>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>>>>> c++11
>>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>>> >> >>
>>>>>>>> >> >> D?enan Zuki? (1):
>>>>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>>>>> >> >>
>>>>>>>> >> >> Eugene Prilepin (1):
>>>>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>>>>> >> >>
>>>>>>>> >> >> Floris Berendsen (1):
>>>>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>>>>> >> >>
>>>>>>>> >> >> Hans Johnson (29):
>>>>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>>>>> >> >>
>>>>>>>> >> >> Hyun Jae Kang (27):
>>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>>> VTK file
>>>>>>>> >> >> header.
>>>>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>>>>> >> >> libraries
>>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac
>>>>>>>> OS X
>>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>>> VTK file
>>>>>>>> >> >> header.
>>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>>>>> autological-compare
>>>>>>>> >> >> warning.
>>>>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>>> messages
>>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>>> messages
>>>>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical
>>>>>>>> data
>>>>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>>>>> function
>>>>>>>> >> >>      ENH: Update the Report() function of
>>>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>>>>> itkResourceProbe
>>>>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>>>>> >> >>
>>>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>>>> >> >>      BUG: Fix compilation issues for
>>>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>>>> >> >>      BUG: Fix comparison issues for
>>>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>>>>> >> >>      ENH: Improve code coverage for
>>>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>>>> >> >>
>>>>>>>> >> >> Julien Michel (1):
>>>>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>>>>> >> >> WarpImageFilter
>>>>>>>> >> >>
>>>>>>>> >> >> Junjie Bai (2):
>>>>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>>>>> LabelObject type
>>>>>>>> >> >>
>>>>>>>> >> >> KWSys Robot (4):
>>>>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>>>>> >> >>
>>>>>>>> >> >> LIBPNG Upstream (2):
>>>>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>>>>> >> >>
>>>>>>>> >> >> Laurentiu Nicola (2):
>>>>>>>> >> >>      PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>>>> bouncing
>>>>>>>> >> >>
>>>>>>>> >> >> Luc Hermitte (8):
>>>>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>>>>> 1/...
>>>>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>>>>> >> >>
>>>>>>>> >> >> Lucas Gandel (4):
>>>>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>>>> module.
>>>>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>>>>> Module
>>>>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>>>> >> >>
>>>>>>>> >> >> Mathieu Malaterre (1):
>>>>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>>>>> >> >>
>>>>>>>> >> >> Matthew McCormick (94):
>>>>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>>>>> itkCMakeConfigurationTest.
>>>>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>>> ConditionVariableNoThreads.
>>>>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>>>>> >> >> ImageToVTKImageFilter.
>>>>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>>>>> >> >> target_link_libraries.
>>>>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with
>>>>>>>> Emscripten-1.
>>>>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>>>>> AnisotropicDiffusionLBR.
>>>>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64
>>>>>>>> Linux.
>>>>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>>>>> >> >>      COMP: Disable the gold linker for static builds on
>>>>>>>> Ubuntu 14.04.
>>>>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja +
>>>>>>>> MSVC.
>>>>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>>>>> >> >>      COMP: Define newSize and oldSize in VariableLengthVector.
>>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>>> >> >>      ENH: Add more progress information to
>>>>>>>> IterativeClosestPoint2.
>>>>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>>>>> >> >>      BUG: ContinuousIndex should not be templated over
>>>>>>>> TCoordRep.
>>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with
>>>>>>>> ITK_WRAPPING_PARSER.
>>>>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>>>>> ITKTransformMINC.
>>>>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>>>> >> >>      ENH: Add wrapping support for building modules
>>>>>>>> externally.
>>>>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>>>>> externally.
>>>>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>>> ConditionVariableNoThreads.
>>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument
>>>>>>>> type.
>>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>> sys.path
>>>>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources so
>>>>>>>> it gets
>>>>>>>> >> >> installed."
>>>>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>>>>> LabelMapTypes"
>>>>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>>>>> advanced.
>>>>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap
>>>>>>>> cannot have
>>>>>>>> >> >> override.
>>>>>>>> >> >>      COMP: Add wrapping for
>>>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>>>>> >> >>      ENH: Remove CMake version check in
>>>>>>>> ITKModuleHeaderTest.cmake
>>>>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param
>>>>>>>> not found.
>>>>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>>>>> detection.
>>>>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>>>> expression
>>>>>>>> >> >> warning.
>>>>>>>> >> >>      BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>>>>> >> >>      STYLE: Improve namespace bracket style in
>>>>>>>> itkIsConvertible.
>>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>>>>> >> >>      BUG: Update Python package installation locations.
>>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module
>>>>>>>> test.
>>>>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>>>>> >> >>      COMP: ITKIOMINC has a public dependency on
>>>>>>>> ITKIOImageBase.
>>>>>>>> >> >>
>>>>>>>> >> >> Michka Popoff (9):
>>>>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>> sys.path
>>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>>> wrapping
>>>>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>>>> >> >> ImageFilterBase
>>>>>>>> >> >> module
>>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>>> wrapping
>>>>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>>>>> >> >>
>>>>>>>> >> >> Mikhail Isakov (1):
>>>>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>>>> baseline image
>>>>>>>> >> >>
>>>>>>>> >> >> Nick Tustison (5):
>>>>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>>>>> strategy.
>>>>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>>>>> >> >>
>>>>>>>> >> >> Olivier Commowick (3):
>>>>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt
>>>>>>>> VNL eigen
>>>>>>>> >> >> system
>>>>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken
>>>>>>>> from pythag
>>>>>>>> >> >> from V3P)
>>>>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>>>>> >> >>
>>>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>>>>> constructor
>>>>>>>> >> >> from
>>>>>>>> >> >> images.
>>>>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>>>>> FlatStructuringElement.
>>>>>>>> >> >>
>>>>>>>> >> >> Seun Odutola (1):
>>>>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>>>>> renamed
>>>>>>>> >> >> check
>>>>>>>> >> >> to Check
>>>>>>>> >> >>
>>>>>>>> >> >> Shawn Waldon (1):
>>>>>>>> >> >>      COMP: Set target OS X version in environment for tools
>>>>>>>> using
>>>>>>>> >> >> compiler
>>>>>>>> >> >>
>>>>>>>> >> >> Simon Alexander (1):
>>>>>>>> >> >>      BUG: incorrect closest point computation
>>>>>>>> >> >>
>>>>>>>> >> >> Tobias Wood (2):
>>>>>>>> >> >>      BUG: LBFGSB was printing messages even with debug
>>>>>>>> switched off.
>>>>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>>>>> >> >>
>>>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC and
>>>>>>>> >> >> Transform
>>>>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>>>>> >> >>      COMP: Update MINC CMake code
>>>>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>>>>> >> >>
>>>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>>>>> >> >>
>>>>>>>> >> >> Zach Williamson (10):
>>>>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>>>>> >> >>      COMP: Add a missing link to Review module
>>>>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>>>>> GPUPDEDeformableRegistration
>>>>>>>> >> >>      ENH: Use new linking system macros
>>>>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>>>>> directories
>>>>>>>> >> >>      COMP: Recover missing dependencies
>>>>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >> -----------------------------------------------------
>>>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> >> >>
>>>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>>>> >> >> _____________________________________
>>>>>>>> >> >> Powered by www.kitware.com
>>>>>>>> >> >>
>>>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>>>> >> >>
>>>>>>>> >> >> Kitware offers ITK Training Courses, for more information
>>>>>>>> visit:
>>>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>>>> >> >>
>>>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>> >> >>
>>>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>>
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>
>>>>>>
>>>>>>> Powered by www.kitware.com
>>>>>>>
>>>>>>> Visit other Kitware open-source projects at
>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>
>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>
>>>>>> http://kitware.com/products/protraining.php
>>>>>>
>>>>>>
>>>>>>>
>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>
>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>
>>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>>>
>>>>>>>
>>>>>>
>>>>
>>
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_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users

From matt.mccormick at kitware.com  Mon Nov 30 20:42:55 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 30 Nov 2015 20:42:55 -0500
Subject: [ITK] [ITK-users] [ITK-dev] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAPf2UMT=7HT0=b6S_OPJhvZLFYsVsOMb_oWpP_+pOPOO9EsnrQ@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
 <CAJFNcCT6w880EzKxXsx7oNHEq8zto646PMvJFrpGRJ+w8DorGQ@mail.gmail.com>
 <CALzTN-S5oLGFxp20L1t89hfo6fR0MOqZR2vv7LX2p_JaraV_kQ@mail.gmail.com>
 <CAJFNcCQoQJtiCock1g9z9N=+W=TwTYsX62bUHfHnTSPSrozNOg@mail.gmail.com>
 <CALzTN-Rpg5BvzFkT5SYSfUaLXM0Ap2fuRe+wDw3Td7iZgpcM6g@mail.gmail.com>
 <CAJFNcCQe-907wcX8JpZRzPf4vz1F3=WD6=9ac8nJ44BMV=cyTA@mail.gmail.com>
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 <CAJFNcCQJb=T7pw+vxw+H+3pvB4HYxEihSpcr21dqfZ9cb2h5dg@mail.gmail.com>
 <CAPf2UMS7QYr-iNikg=cOeNEHY36B6EmznPXFbB2QheRM_V+g+Q@mail.gmail.com>
 <CAJFNcCSvFRopjuQFWxfNBc7h40ZoYpV5w3dq2JNu7JfTE3LUuA@mail.gmail.com>
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 <CAPf2UMT=7HT0=b6S_OPJhvZLFYsVsOMb_oWpP_+pOPOO9EsnrQ@mail.gmail.com>
Message-ID: <CALzTN-RaMCFdZZeaBYrU+o1ciubQcY=B_tKrN7+LGrEvim59PQ@mail.gmail.com>

Hi Simon,

I am returning from holiday, and also catching up on activity.


Hyun Jae has taken care of the KWStyle warnings and the data conversion
warning:

  http://review.source.kitware.com/#/c/20430/
  http://review.source.kitware.com/#/c/20446/


And Dzenan and Bill have addressed Wiki examples errors:

  https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3


It is likely that the test failures on your build still remain.  Did you
want to take them on?

Thanks,
Matt

On Mon, Nov 30, 2015 at 2:00 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:

> Looking at the master branch is the right thing to do. I am not doing any
> active development regarding this right now.
>
> On Mon, Nov 30, 2015 at 1:53 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Hi All,
>>
>> I had hoped to be able to look at this over the weekend, but no such
>> luck. Is there somewhere useful I can help with it now?  Not sure what
>> state we are in (or what branch).
>>
>> On Wed, 25 Nov 2015 at 16:41 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> It turns out that all the compile errors were occurring in WikiExamples.
>>> I solved all except one:
>>> ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
>>> file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
>>> 23, but it should be judging from the comment on that line.
>>>
>>> For the rest, I created a pull request:
>>> https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
>>>
>>> On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com>
>>> wrote:
>>>
>>>> Perfect.  I'm under a deadline that is likely to eat the rest of the
>>>> week but if that clears up I'll try and jump in earlier.
>>>>
>>>> On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>
>>>>> OK I will work on it for an hour or two now, and I will make a branch
>>>>> and push it to Gerrit so whoever wants can pick up from there and keep
>>>>> updating it.
>>>>>
>>>>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <
>>>>> skalexander at gmail.com> wrote:
>>>>>
>>>>>> Makes sense.  At this point I am unlikely to have time to look at
>>>>>> this until Saturday, but have hopes for a few free hours there.
>>>>>>
>>>>>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>>
>>>>>>> Building git master from Nov 23rd with examples and testing enabled
>>>>>>> I get 14 compile errors in VS2015 debug x64. Should we coordinate our
>>>>>>> efforts in fixing them?
>>>>>>>
>>>>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>>>>> skalexander at gmail.com> wrote:
>>>>>>>
>>>>>>>> Two of the three failures look like truncation issues (like
>>>>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158
>>>>>>>> )
>>>>>>>>
>>>>>>>> The other (
>>>>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>>>>>  is less obvious.
>>>>>>>>
>>>>>>>> If I have time this evening I'll try and have a look at these.
>>>>>>>>
>>>>>>>> Is your standard test build in 32 bit ?  That might explain the
>>>>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>>>>> why 2015 would trigger but not 2013.
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>>>>> matt.mccormick at kitware.com> wrote:
>>>>>>>>
>>>>>>>>> Ah, cool!  Here:
>>>>>>>>>
>>>>>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>>>>
>>>>>>>>> Could you please look into the test failures?
>>>>>>>>>
>>>>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>>>>
>>>>>>>>> Thanks,
>>>>>>>>> Matt
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>>>>> skalexander at gmail.com> wrote:
>>>>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>>>>>> SIMON-LAP,
>>>>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>>>>> one).  VS2013
>>>>>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks
>>>>>>>>> like a
>>>>>>>>> > truncation problem on the resuts.
>>>>>>>>> >
>>>>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>>> > wrote:
>>>>>>>>> >>
>>>>>>>>> >> Hi Simon,
>>>>>>>>> >>
>>>>>>>>> >> Thanks for testing.
>>>>>>>>> >>
>>>>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is
>>>>>>>>> green:
>>>>>>>>> >>
>>>>>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>>>>> >>
>>>>>>>>> >> Are there any different flags? Could you please submit an
>>>>>>>>> Experimental
>>>>>>>>> >> build?
>>>>>>>>> >>
>>>>>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>>>>> Submit -C
>>>>>>>>> >> Release
>>>>>>>>> >>
>>>>>>>>> >> from a fresh build tree.
>>>>>>>>> >>
>>>>>>>>> >> Thanks,
>>>>>>>>> >> Matt
>>>>>>>>> >>
>>>>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>>>>> skalexander at gmail.com>
>>>>>>>>> >> wrote:
>>>>>>>>> >> > Looks like a few problems with x64 build on visual studio
>>>>>>>>> 2015 - do you
>>>>>>>>> >> > have
>>>>>>>>> >> > a test machine in this configuration?
>>>>>>>>> >> >
>>>>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>>> >> > wrote:
>>>>>>>>> >> >>
>>>>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>>>>>> announce
>>>>>>>>> >> >> that
>>>>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available
>>>>>>>>> for
>>>>>>>>> >> >> testing!
>>>>>>>>> >> >>
>>>>>>>>> >> >> Please take this opportunity to test the new features in the
>>>>>>>>> release
>>>>>>>>> >> >> candidate.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> To obtain the source code,
>>>>>>>>> >> >>
>>>>>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>>>>>> >> >>  cd ITK
>>>>>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>>>>>> >> >>
>>>>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> A few selected highlights for this release:
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>>>>> generation of
>>>>>>>>> >> >> meshes
>>>>>>>>> >> >> from binary segmentation images, and the
>>>>>>>>> AnisotropicDiffusionLBR module
>>>>>>>>> >> >> improved edge-preserving smoothing.
>>>>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>>>>> continuous
>>>>>>>>> >> >> integration testing on GitHub, and easily add Python
>>>>>>>>> wrapping for your
>>>>>>>>> >> >> C++
>>>>>>>>> >> >> algorithms.
>>>>>>>>> >> >> * Python wrapping, including Python 3, builds faster with a
>>>>>>>>> more
>>>>>>>>> >> >> standard
>>>>>>>>> >> >> installation
>>>>>>>>> >> >> * Improved performance of itk::Image::GetPixel and
>>>>>>>>> operations on
>>>>>>>>> >> >> itk::VariableLengthVector?s
>>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>>> private /
>>>>>>>>> >> >> compile /
>>>>>>>>> >> >> test
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Please test the release candidate and share your experiences
>>>>>>>>> on the
>>>>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>>>>>> module
>>>>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>>>>> dependencies for
>>>>>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>>>>>> command.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>>>>>> performs
>>>>>>>>> >> >> on
>>>>>>>>> >> >> your local build system, can be submitted to the dashboard
>>>>>>>>> [2] with:
>>>>>>>>> >> >>
>>>>>>>>> >> >>   mkdir ../ITK-build
>>>>>>>>> >> >>   cd ../ITK-build
>>>>>>>>> >> >>   cmake ../ITK
>>>>>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test
>>>>>>>>> -T Submit
>>>>>>>>> >> >>
>>>>>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>>>>>> command.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Notify the mailing list if there are any unexpected
>>>>>>>>> failures.  Testing
>>>>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>>>>>> release.
>>>>>>>>> >> >> We
>>>>>>>>> >> >> would especially like to recognize the new contributors:
>>>>>>>>> Mikhail
>>>>>>>>> >> >> Isakov,
>>>>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood,
>>>>>>>>> Seun
>>>>>>>>> >> >> Odutola,
>>>>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>>>>> Williamson,
>>>>>>>>> >> >> Luc
>>>>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>>>>> >> >>
>>>>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> New Features
>>>>>>>>> >> >> ---------------------
>>>>>>>>> >> >>
>>>>>>>>> >> >> Wrapping improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Python 3 supported
>>>>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>>>>>> directory in
>>>>>>>>> >> >> the
>>>>>>>>> >> >> ?itk? package
>>>>>>>>> >> >> * Wrapping package size is decreased
>>>>>>>>> >> >> * Better package portability on Mac OSX
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> New Remote Modules
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Cuberille
>>>>>>>>> >> >>    * Insight Journal Article:
>>>>>>>>> http://hdl.handle.net/10380/3186
>>>>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>>>>> >> >>    * Insight Journal Article:
>>>>>>>>> http://hdl.handle.net/10380/3505
>>>>>>>>> >> >>    * Web browser reproducibility:
>>>>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Core Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>>>>> source tree
>>>>>>>>> >> >> and
>>>>>>>>> >> >> on GitHub
>>>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>>>>>> >> >> * New utilities in itk::Math:
>>>>>>>>> >> >>    * AlmostEquals
>>>>>>>>> >> >>    * NotAlmostEquals
>>>>>>>>> >> >>    * ExactlyEquals
>>>>>>>>> >> >>    * NotExactlyEquals
>>>>>>>>> >> >> * New itk::NumericTraits
>>>>>>>>> >> >>    * IsInteger
>>>>>>>>> >> >>    * IsSigned
>>>>>>>>> >> >> * Improved C++11 support
>>>>>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Filtering Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>>>>>> module
>>>>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>>>>> ITKImageFilterBase
>>>>>>>>> >> >> module
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Registration Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Build Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>>> private /
>>>>>>>>> >> >> compile /
>>>>>>>>> >> >> test
>>>>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>>>>>> >> >> * Expat third party library is now name mangled
>>>>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>>>>> >> >> * KWStyle is automatically built and configured when tests
>>>>>>>>> are built
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Performance Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds
>>>>>>>>> members for
>>>>>>>>> >> >> metaprogramming
>>>>>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>>>>>> >> >>    * itk::mpl::EnableIf
>>>>>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>>>>>> >> >>    * itk::mpl::IsConvertible
>>>>>>>>> >> >>    * itk::mpl::IsNumber
>>>>>>>>> >> >>    * itk::mpl::IsSame
>>>>>>>>> >> >>    * itk::mpl::PromoteType
>>>>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Documentation Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>>>>> Examples
>>>>>>>>> >> >> * ITK Software Guide improvements
>>>>>>>>> >> >>    * How to use Python wrapping
>>>>>>>>> >> >>    * How to create an ITK module
>>>>>>>>> >> >>    * Improvements to segmentation examples
>>>>>>>>> >> >>    * Expanded Canny edge detection example
>>>>>>>>> >> >>    * Expanded tree container example
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Third Party Library Updates
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * FFTW updated to latest upstream
>>>>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>>>>> >> >> * Build with the latest VTK
>>>>>>>>> >> >> * PNG update to the latest upstream
>>>>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>>>>> >> >> * MINC updated to the latest upstream
>>>>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Style improvements -- ITK gets more stylish with every
>>>>>>>>> release!
>>>>>>>>> >> >>
>>>>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Private copy constructors and operator= use
>>>>>>>>> ITK_DELETE_FUNCTION
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> * *Lots* of important bug fixes
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> * And much more! See details in the log below.
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>>>>> >> >> --------------------------------------------
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Abhishek Tiwari (1):
>>>>>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Adam Snyder (1):
>>>>>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>>>>>> >> >>
>>>>>>>>> >> >> Alexander Leinoff (6):
>>>>>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be
>>>>>>>>> resolved.
>>>>>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions
>>>>>>>>> to
>>>>>>>>> >> >> itkMath.h
>>>>>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>>>>>> Math::AlmostEquals
>>>>>>>>> >> >>      ENH: Updates fftw dependency
>>>>>>>>> >> >>
>>>>>>>>> >> >> Arnaud Gelas (5):
>>>>>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>>>>> >> >>      DOC: add doxgen documentation for
>>>>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>>>>> >> >>      ENH: add tests to exercise
>>>>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>>>>> >> >>
>>>>>>>>> >> >> Betsy McPhail (1):
>>>>>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>>>>>> >> >>
>>>>>>>>> >> >> Bill Hoffman (2):
>>>>>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>>>>>> >> >> installed.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Bill Lorensen (4):
>>>>>>>>> >> >>      COMP: VTkGlue linker errors
>>>>>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>>>>>> >> >>      ENH: Better layout strategy
>>>>>>>>> >> >>
>>>>>>>>> >> >> Brad King (3):
>>>>>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and
>>>>>>>>> itksys_ios::*
>>>>>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and
>>>>>>>>> itksys_stl::*
>>>>>>>>> >> >>      ENH: Update CMake Policy settings in
>>>>>>>>> Testing/TestExternal project
>>>>>>>>> >> >>
>>>>>>>>> >> >> Bradley Lowekamp (31):
>>>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>>>> construction
>>>>>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>>>>>> initializer
>>>>>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>>>>>> >> >>      ENH: Adding initial update script from used libpng
>>>>>>>>> version.
>>>>>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged
>>>>>>>>> code
>>>>>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>>>>>> affine
>>>>>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>>>>>> >> >>      BUG: Avoid potential exception in
>>>>>>>>> itk::Object::UnRegister
>>>>>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>>>>>> >> >>      ENH: Update itkpng name mangling
>>>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>>>> ReferenceImage
>>>>>>>>> >> >> ivar
>>>>>>>>> >> >>      BUG: Increase tolerance for
>>>>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>>>>>> BSplineScatter
>>>>>>>>> >> >> change
>>>>>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>>>>>> >> >> ImageFilterBase
>>>>>>>>> >> >>      BUG: Avoid potential exception in
>>>>>>>>> itk::Object::UnRegister
>>>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>>>> construction
>>>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>>>> ReferenceImage
>>>>>>>>> >> >> ivar
>>>>>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>>>>>> MovingHistogram
>>>>>>>>> >> >> base
>>>>>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>>>>>> anonymous ns
>>>>>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>>>>>> Threshold
>>>>>>>>> >> >> range
>>>>>>>>> >> >>      BUG: Adjust intensity tolerance for
>>>>>>>>> PhysicsBasedNonRigid test
>>>>>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>>>>>> >> >>
>>>>>>>>> >> >> Davis Vigneault (7):
>>>>>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>>>>>> c++11
>>>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>>>> >> >>
>>>>>>>>> >> >> D?enan Zuki? (1):
>>>>>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>>>>>> >> >>
>>>>>>>>> >> >> Eugene Prilepin (1):
>>>>>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>>>>>> >> >>
>>>>>>>>> >> >> Floris Berendsen (1):
>>>>>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Hans Johnson (29):
>>>>>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>>>>>> >> >>
>>>>>>>>> >> >> Hyun Jae Kang (27):
>>>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>>>> VTK file
>>>>>>>>> >> >> header.
>>>>>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and
>>>>>>>>> shared
>>>>>>>>> >> >> libraries
>>>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac
>>>>>>>>> OS X
>>>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>>>> VTK file
>>>>>>>>> >> >> header.
>>>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>>>>>> autological-compare
>>>>>>>>> >> >> warning.
>>>>>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>>>> messages
>>>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>>>> messages
>>>>>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical
>>>>>>>>> data
>>>>>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>>>>>> function
>>>>>>>>> >> >>      ENH: Update the Report() function of
>>>>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>>>>>> itkResourceProbe
>>>>>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>>>>>> >> >>
>>>>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>>>>> >> >>      BUG: Fix compilation issues for
>>>>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>>>>> >> >>      BUG: Fix comparison issues for
>>>>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>>>>>> >> >>      ENH: Improve code coverage for
>>>>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>>>>> >> >>
>>>>>>>>> >> >> Julien Michel (1):
>>>>>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>>>>>> >> >> WarpImageFilter
>>>>>>>>> >> >>
>>>>>>>>> >> >> Junjie Bai (2):
>>>>>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>>>>>> LabelObject type
>>>>>>>>> >> >>
>>>>>>>>> >> >> KWSys Robot (4):
>>>>>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>>>>>> >> >>
>>>>>>>>> >> >> LIBPNG Upstream (2):
>>>>>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>>>>>> >> >>
>>>>>>>>> >> >> Laurentiu Nicola (2):
>>>>>>>>> >> >>      PERF: Avoid temporary smartptr in
>>>>>>>>> ProcessObject::GetInput
>>>>>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>>>>> bouncing
>>>>>>>>> >> >>
>>>>>>>>> >> >> Luc Hermitte (8):
>>>>>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>>>>>> 1/...
>>>>>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>>>>>> >> >>
>>>>>>>>> >> >> Lucas Gandel (4):
>>>>>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>>>>> module.
>>>>>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>>>>>> Module
>>>>>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>>>>> >> >>
>>>>>>>>> >> >> Mathieu Malaterre (1):
>>>>>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Matthew McCormick (94):
>>>>>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>>>>>> itkCMakeConfigurationTest.
>>>>>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>>>> ConditionVariableNoThreads.
>>>>>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>>>>>> >> >> ImageToVTKImageFilter.
>>>>>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>>>>>> >> >> target_link_libraries.
>>>>>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with
>>>>>>>>> Emscripten-1.
>>>>>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>>>>>> AnisotropicDiffusionLBR.
>>>>>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64
>>>>>>>>> Linux.
>>>>>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>>>>>> >> >>      COMP: Disable the gold linker for static builds on
>>>>>>>>> Ubuntu 14.04.
>>>>>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja +
>>>>>>>>> MSVC.
>>>>>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>>>>>> >> >>      COMP: Define newSize and oldSize in
>>>>>>>>> VariableLengthVector.
>>>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>>>> >> >>      ENH: Add more progress information to
>>>>>>>>> IterativeClosestPoint2.
>>>>>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>>>>>> >> >>      BUG: ContinuousIndex should not be templated over
>>>>>>>>> TCoordRep.
>>>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with
>>>>>>>>> ITK_WRAPPING_PARSER.
>>>>>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>>>>>> ITKTransformMINC.
>>>>>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>>>>> >> >>      ENH: Add wrapping support for building modules
>>>>>>>>> externally.
>>>>>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>>>>>> externally.
>>>>>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>>>> ConditionVariableNoThreads.
>>>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to
>>>>>>>>> 2015-10-20.
>>>>>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument
>>>>>>>>> type.
>>>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>>> sys.path
>>>>>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources
>>>>>>>>> so it gets
>>>>>>>>> >> >> installed."
>>>>>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>>>>>> LabelMapTypes"
>>>>>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>>>>>> advanced.
>>>>>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap
>>>>>>>>> cannot have
>>>>>>>>> >> >> override.
>>>>>>>>> >> >>      COMP: Add wrapping for
>>>>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>>>>>> >> >>      ENH: Remove CMake version check in
>>>>>>>>> ITKModuleHeaderTest.cmake
>>>>>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param
>>>>>>>>> not found.
>>>>>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>>>>>> detection.
>>>>>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>>>>> expression
>>>>>>>>> >> >> warning.
>>>>>>>>> >> >>      BUG: ITKCommon publically depends on
>>>>>>>>> ITKDoubleConversion.
>>>>>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>>>>>> >> >>      STYLE: Improve namespace bracket style in
>>>>>>>>> itkIsConvertible.
>>>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>>>>>> >> >>      BUG: Update Python package installation locations.
>>>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module
>>>>>>>>> test.
>>>>>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>>>>>> >> >>      COMP: ITKIOMINC has a public dependency on
>>>>>>>>> ITKIOImageBase.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Michka Popoff (9):
>>>>>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>>> sys.path
>>>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>>>> wrapping
>>>>>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>>>>> >> >> ImageFilterBase
>>>>>>>>> >> >> module
>>>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>>>> wrapping
>>>>>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>>>>>> >> >>
>>>>>>>>> >> >> Mikhail Isakov (1):
>>>>>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>>>>> baseline image
>>>>>>>>> >> >>
>>>>>>>>> >> >> Nick Tustison (5):
>>>>>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>>>>>> strategy.
>>>>>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Olivier Commowick (3):
>>>>>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt
>>>>>>>>> VNL eigen
>>>>>>>>> >> >> system
>>>>>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken
>>>>>>>>> from pythag
>>>>>>>>> >> >> from V3P)
>>>>>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>>>>>> >> >>
>>>>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>>>>>> constructor
>>>>>>>>> >> >> from
>>>>>>>>> >> >> images.
>>>>>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>>>>>> FlatStructuringElement.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Seun Odutola (1):
>>>>>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>>>>>> renamed
>>>>>>>>> >> >> check
>>>>>>>>> >> >> to Check
>>>>>>>>> >> >>
>>>>>>>>> >> >> Shawn Waldon (1):
>>>>>>>>> >> >>      COMP: Set target OS X version in environment for tools
>>>>>>>>> using
>>>>>>>>> >> >> compiler
>>>>>>>>> >> >>
>>>>>>>>> >> >> Simon Alexander (1):
>>>>>>>>> >> >>      BUG: incorrect closest point computation
>>>>>>>>> >> >>
>>>>>>>>> >> >> Tobias Wood (2):
>>>>>>>>> >> >>      BUG: LBFGSB was printing messages even with debug
>>>>>>>>> switched off.
>>>>>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC
>>>>>>>>> and
>>>>>>>>> >> >> Transform
>>>>>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>>>>>> >> >>      COMP: Update MINC CMake code
>>>>>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>>>>>> >> >>
>>>>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Zach Williamson (10):
>>>>>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>>>>>> >> >>      COMP: Add a missing link to Review module
>>>>>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>>>>>> GPUPDEDeformableRegistration
>>>>>>>>> >> >>      ENH: Use new linking system macros
>>>>>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>>>>>> directories
>>>>>>>>> >> >>      COMP: Recover missing dependencies
>>>>>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> -----------------------------------------------------
>>>>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>>>>> >> >> _____________________________________
>>>>>>>>> >> >> Powered by www.kitware.com
>>>>>>>>> >> >>
>>>>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>>>>> >> >>
>>>>>>>>> >> >> Kitware offers ITK Training Courses, for more information
>>>>>>>>> visit:
>>>>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>>>>> >> >>
>>>>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>> >> >>
>>>>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>>>
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>
>>>>>>>
>>>>>>>> Powered by www.kitware.com
>>>>>>>>
>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>
>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>>
>>>>>>> http://kitware.com/products/protraining.php
>>>>>>>
>>>>>>>
>>>>>>>>
>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>
>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>>
>>>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>
>>>
>
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Powered by www.kitware.com

Visit other Kitware open-source projects at
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Kitware offers ITK Training Courses, for more information visit:
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Please keep messages on-topic and check the ITK FAQ at:
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From matt.mccormick at kitware.com  Mon Nov 30 20:42:55 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 30 Nov 2015 20:42:55 -0500
Subject: [ITK] [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1
 is ready for testing!
In-Reply-To: <CAPf2UMT=7HT0=b6S_OPJhvZLFYsVsOMb_oWpP_+pOPOO9EsnrQ@mail.gmail.com>
References: <CALzTN-QFzWXhwYCUukD-vtDFjZWyA-C27-5-D0CCrvFgK8OsfQ@mail.gmail.com>
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Message-ID: <CALzTN-RaMCFdZZeaBYrU+o1ciubQcY=B_tKrN7+LGrEvim59PQ@mail.gmail.com>

Hi Simon,

I am returning from holiday, and also catching up on activity.


Hyun Jae has taken care of the KWStyle warnings and the data conversion
warning:

  http://review.source.kitware.com/#/c/20430/
  http://review.source.kitware.com/#/c/20446/


And Dzenan and Bill have addressed Wiki examples errors:

  https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3


It is likely that the test failures on your build still remain.  Did you
want to take them on?

Thanks,
Matt

On Mon, Nov 30, 2015 at 2:00 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:

> Looking at the master branch is the right thing to do. I am not doing any
> active development regarding this right now.
>
> On Mon, Nov 30, 2015 at 1:53 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Hi All,
>>
>> I had hoped to be able to look at this over the weekend, but no such
>> luck. Is there somewhere useful I can help with it now?  Not sure what
>> state we are in (or what branch).
>>
>> On Wed, 25 Nov 2015 at 16:41 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> It turns out that all the compile errors were occurring in WikiExamples.
>>> I solved all except one:
>>> ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
>>> file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
>>> 23, but it should be judging from the comment on that line.
>>>
>>> For the rest, I created a pull request:
>>> https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
>>>
>>> On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com>
>>> wrote:
>>>
>>>> Perfect.  I'm under a deadline that is likely to eat the rest of the
>>>> week but if that clears up I'll try and jump in earlier.
>>>>
>>>> On Wed, 25 Nov 2015 at 16:06 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>
>>>>> OK I will work on it for an hour or two now, and I will make a branch
>>>>> and push it to Gerrit so whoever wants can pick up from there and keep
>>>>> updating it.
>>>>>
>>>>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <
>>>>> skalexander at gmail.com> wrote:
>>>>>
>>>>>> Makes sense.  At this point I am unlikely to have time to look at
>>>>>> this until Saturday, but have hopes for a few free hours there.
>>>>>>
>>>>>> On Wed, 25 Nov 2015 at 15:58 D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>>
>>>>>>> Building git master from Nov 23rd with examples and testing enabled
>>>>>>> I get 14 compile errors in VS2015 debug x64. Should we coordinate our
>>>>>>> efforts in fixing them?
>>>>>>>
>>>>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>>>>> skalexander at gmail.com> wrote:
>>>>>>>
>>>>>>>> Two of the three failures look like truncation issues (like
>>>>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158
>>>>>>>> )
>>>>>>>>
>>>>>>>> The other (
>>>>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>>>>>  is less obvious.
>>>>>>>>
>>>>>>>> If I have time this evening I'll try and have a look at these.
>>>>>>>>
>>>>>>>> Is your standard test build in 32 bit ?  That might explain the
>>>>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>>>>> why 2015 would trigger but not 2013.
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>>>>> matt.mccormick at kitware.com> wrote:
>>>>>>>>
>>>>>>>>> Ah, cool!  Here:
>>>>>>>>>
>>>>>>>>>  https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>>>>
>>>>>>>>> Could you please look into the test failures?
>>>>>>>>>
>>>>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>>>>
>>>>>>>>> Thanks,
>>>>>>>>> Matt
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>>>>> skalexander at gmail.com> wrote:
>>>>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>>>>>> SIMON-LAP,
>>>>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>>>>> one).  VS2013
>>>>>>>>> > was green, three failures on VS2015  (and 18 warnings).  Looks
>>>>>>>>> like a
>>>>>>>>> > truncation problem on the resuts.
>>>>>>>>> >
>>>>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>>> > wrote:
>>>>>>>>> >>
>>>>>>>>> >> Hi Simon,
>>>>>>>>> >>
>>>>>>>>> >> Thanks for testing.
>>>>>>>>> >>
>>>>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is
>>>>>>>>> green:
>>>>>>>>> >>
>>>>>>>>> >>   https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>>>>> >>
>>>>>>>>> >> Are there any different flags? Could you please submit an
>>>>>>>>> Experimental
>>>>>>>>> >> build?
>>>>>>>>> >>
>>>>>>>>> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test -T
>>>>>>>>> Submit -C
>>>>>>>>> >> Release
>>>>>>>>> >>
>>>>>>>>> >> from a fresh build tree.
>>>>>>>>> >>
>>>>>>>>> >> Thanks,
>>>>>>>>> >> Matt
>>>>>>>>> >>
>>>>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>>>>> skalexander at gmail.com>
>>>>>>>>> >> wrote:
>>>>>>>>> >> > Looks like a few problems with x64 build on visual studio
>>>>>>>>> 2015 - do you
>>>>>>>>> >> > have
>>>>>>>>> >> > a test machine in this configuration?
>>>>>>>>> >> >
>>>>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>>> >> > wrote:
>>>>>>>>> >> >>
>>>>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>>>>>> announce
>>>>>>>>> >> >> that
>>>>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available
>>>>>>>>> for
>>>>>>>>> >> >> testing!
>>>>>>>>> >> >>
>>>>>>>>> >> >> Please take this opportunity to test the new features in the
>>>>>>>>> release
>>>>>>>>> >> >> candidate.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> To obtain the source code,
>>>>>>>>> >> >>
>>>>>>>>> >> >>   git clone http://itk.org/ITK.git
>>>>>>>>> >> >>  cd ITK
>>>>>>>>> >> >>  git checkout -q --detach v4.9rc01
>>>>>>>>> >> >>
>>>>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> A few selected highlights for this release:
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>>>>> generation of
>>>>>>>>> >> >> meshes
>>>>>>>>> >> >> from binary segmentation images, and the
>>>>>>>>> AnisotropicDiffusionLBR module
>>>>>>>>> >> >> improved edge-preserving smoothing.
>>>>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>>>>> continuous
>>>>>>>>> >> >> integration testing on GitHub, and easily add Python
>>>>>>>>> wrapping for your
>>>>>>>>> >> >> C++
>>>>>>>>> >> >> algorithms.
>>>>>>>>> >> >> * Python wrapping, including Python 3, builds faster with a
>>>>>>>>> more
>>>>>>>>> >> >> standard
>>>>>>>>> >> >> installation
>>>>>>>>> >> >> * Improved performance of itk::Image::GetPixel and
>>>>>>>>> operations on
>>>>>>>>> >> >> itk::VariableLengthVector?s
>>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>>> private /
>>>>>>>>> >> >> compile /
>>>>>>>>> >> >> test
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Please test the release candidate and share your experiences
>>>>>>>>> on the
>>>>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>>>>>> module
>>>>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>>>>> dependencies for
>>>>>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>>>>>> command.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>>>>>> performs
>>>>>>>>> >> >> on
>>>>>>>>> >> >> your local build system, can be submitted to the dashboard
>>>>>>>>> [2] with:
>>>>>>>>> >> >>
>>>>>>>>> >> >>   mkdir ../ITK-build
>>>>>>>>> >> >>   cd ../ITK-build
>>>>>>>>> >> >>   cmake ../ITK
>>>>>>>>> >> >>   ctest -j 4 -M Experimental  -T Configure -T Build -T Test
>>>>>>>>> -T Submit
>>>>>>>>> >> >>
>>>>>>>>> >> >> Visual Studio builds must also add ?-C Release? to the ctest
>>>>>>>>> command.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Notify the mailing list if there are any unexpected
>>>>>>>>> failures.  Testing
>>>>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>>>>>> release.
>>>>>>>>> >> >> We
>>>>>>>>> >> >> would especially like to recognize the new contributors:
>>>>>>>>> Mikhail
>>>>>>>>> >> >> Isakov,
>>>>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood,
>>>>>>>>> Seun
>>>>>>>>> >> >> Odutola,
>>>>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>>>>> Williamson,
>>>>>>>>> >> >> Luc
>>>>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>>>>> >> >>
>>>>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> New Features
>>>>>>>>> >> >> ---------------------
>>>>>>>>> >> >>
>>>>>>>>> >> >> Wrapping improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Python 3 supported
>>>>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>>>>> >> >> * Wrapping is now installed into Python?s site-packages
>>>>>>>>> directory in
>>>>>>>>> >> >> the
>>>>>>>>> >> >> ?itk? package
>>>>>>>>> >> >> * Wrapping package size is decreased
>>>>>>>>> >> >> * Better package portability on Mac OSX
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> New Remote Modules
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Cuberille
>>>>>>>>> >> >>    * Insight Journal Article:
>>>>>>>>> http://hdl.handle.net/10380/3186
>>>>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>>>>> >> >>    * Insight Journal Article:
>>>>>>>>> http://hdl.handle.net/10380/3505
>>>>>>>>> >> >>    * Web browser reproducibility:
>>>>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Core Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>>>>> source tree
>>>>>>>>> >> >> and
>>>>>>>>> >> >> on GitHub
>>>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/997
>>>>>>>>> >> >> * New utilities in itk::Math:
>>>>>>>>> >> >>    * AlmostEquals
>>>>>>>>> >> >>    * NotAlmostEquals
>>>>>>>>> >> >>    * ExactlyEquals
>>>>>>>>> >> >>    * NotExactlyEquals
>>>>>>>>> >> >> * New itk::NumericTraits
>>>>>>>>> >> >>    * IsInteger
>>>>>>>>> >> >>    * IsSigned
>>>>>>>>> >> >> * Improved C++11 support
>>>>>>>>> >> >>    * New ITK_DELETE_FUNCTION macro for ?=delete?
>>>>>>>>> >> >>    * New ITK_NOEXCEPT macro for the ?noexcept? keyword
>>>>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Filtering Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>>> >> >> * WarpImageFilter support VectorImage?s
>>>>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>>>>>> module
>>>>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>>>>> ITKImageFilterBase
>>>>>>>>> >> >> module
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Registration Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Build Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>>> private /
>>>>>>>>> >> >> compile /
>>>>>>>>> >> >> test
>>>>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>>>>> >> >>    * Details: http://www.kitware.com/blog/home/post/939
>>>>>>>>> >> >> * Expat third party library is now name mangled
>>>>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>>>>> >> >> * KWStyle is automatically built and configured when tests
>>>>>>>>> are built
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Performance Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds
>>>>>>>>> members for
>>>>>>>>> >> >> metaprogramming
>>>>>>>>> >> >>    * itk::mpl::{TrueType,FalseType}
>>>>>>>>> >> >>    * itk::mpl::{If,Not,And,Or,Xor}
>>>>>>>>> >> >>    * itk::mpl::EnableIf
>>>>>>>>> >> >>    * itk::mpl::IsBaseOf
>>>>>>>>> >> >>    * itk::mpl::IsConvertible
>>>>>>>>> >> >>    * itk::mpl::IsNumber
>>>>>>>>> >> >>    * itk::mpl::IsSame
>>>>>>>>> >> >>    * itk::mpl::PromoteType
>>>>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Documentation Improvements
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>>>>> Examples
>>>>>>>>> >> >> * ITK Software Guide improvements
>>>>>>>>> >> >>    * How to use Python wrapping
>>>>>>>>> >> >>    * How to create an ITK module
>>>>>>>>> >> >>    * Improvements to segmentation examples
>>>>>>>>> >> >>    * Expanded Canny edge detection example
>>>>>>>>> >> >>    * Expanded tree container example
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Third Party Library Updates
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * FFTW updated to latest upstream
>>>>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>>>>> >> >> * Build with the latest VTK
>>>>>>>>> >> >> * PNG update to the latest upstream
>>>>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>>>>> >> >> * MINC updated to the latest upstream
>>>>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Style improvements -- ITK gets more stylish with every
>>>>>>>>> release!
>>>>>>>>> >> >>
>>>>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >> * Private copy constructors and operator= use
>>>>>>>>> ITK_DELETE_FUNCTION
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> * *Lots* of important bug fixes
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> * And much more! See details in the log below.
>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>>>>> >> >> --------------------------------------------
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> Abhishek Tiwari (1):
>>>>>>>>> >> >>      BUG: "tmpImageIndex" not initialized to 0.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Adam Snyder (1):
>>>>>>>>> >> >>      PERF: Reworked MMI Threading using a per-thread buffer
>>>>>>>>> >> >>
>>>>>>>>> >> >> Alexander Leinoff (6):
>>>>>>>>> >> >>      ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>>>>> >> >>      COMP: Doxygen itkMath.h 'OneValue()' could not be
>>>>>>>>> resolved.
>>>>>>>>> >> >>      ENH: Adds ExactlyEquals and NotExactlyEquals functions
>>>>>>>>> to
>>>>>>>>> >> >> itkMath.h
>>>>>>>>> >> >>      COMP: Removes floating-point equality checks
>>>>>>>>> >> >>      ENH: COMP: Adds support for complex values to
>>>>>>>>> Math::AlmostEquals
>>>>>>>>> >> >>      ENH: Updates fftw dependency
>>>>>>>>> >> >>
>>>>>>>>> >> >> Arnaud Gelas (5):
>>>>>>>>> >> >>      COMP: fix warning (unused local typedef)
>>>>>>>>> >> >>      COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>>>>> >> >>      DOC: add doxgen documentation for
>>>>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>>>>> >> >>      ENH: add tests to exercise
>>>>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>>>>> >> >>      COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>>>>> >> >>
>>>>>>>>> >> >> Betsy McPhail (1):
>>>>>>>>> >> >>      BUG: Improve buffer alignment in OctreeNode .
>>>>>>>>> >> >>
>>>>>>>>> >> >> Bill Hoffman (2):
>>>>>>>>> >> >>      ENH: Use new CMake Windows export symbol dll feature.
>>>>>>>>> >> >>      COMP: Put vnl_export.h in the list of sources so it gets
>>>>>>>>> >> >> installed.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Bill Lorensen (4):
>>>>>>>>> >> >>      COMP: VTkGlue linker errors
>>>>>>>>> >> >>      BUG: Inappropriate use of AlmostEquals
>>>>>>>>> >> >>      ENH: Bump tag for wiki examples
>>>>>>>>> >> >>      ENH: Better layout strategy
>>>>>>>>> >> >>
>>>>>>>>> >> >> Brad King (3):
>>>>>>>>> >> >>      ENH: Remove use of include <itksys/ios/*> and
>>>>>>>>> itksys_ios::*
>>>>>>>>> >> >>      ENH: Remove use of include <itksys/stl/*> and
>>>>>>>>> itksys_stl::*
>>>>>>>>> >> >>      ENH: Update CMake Policy settings in
>>>>>>>>> Testing/TestExternal project
>>>>>>>>> >> >>
>>>>>>>>> >> >> Bradley Lowekamp (31):
>>>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>>>> construction
>>>>>>>>> >> >>      ENH: Enable base classes for templates of landmark
>>>>>>>>> initializer
>>>>>>>>> >> >>      STYLE: Use "Swap" for ITK member name
>>>>>>>>> >> >>      BUG: Demonstrate Eigen analysis failure
>>>>>>>>> >> >>      BUG: Fix computation of Eigen analysis
>>>>>>>>> >> >>      ENH: Update DiscreteHessianGaussian Test baseline
>>>>>>>>> >> >>      ENH: Correctly demonstrate float point Eigen failure
>>>>>>>>> >> >>      ENH: compile vnl_math_hypot, and use at least double
>>>>>>>>> >> >>      ENH: Adding initial update script from used libpng
>>>>>>>>> version.
>>>>>>>>> >> >>      ENH: removing non-subtree files for itkpng
>>>>>>>>> >> >>      ENH: Ported ITK changes for building to subtree merged
>>>>>>>>> code
>>>>>>>>> >> >>      ENH: Update libpng update script for v1.6.9
>>>>>>>>> >> >>      BUG: Use ParameterValueType for computation of landmark
>>>>>>>>> affine
>>>>>>>>> >> >>      ENH: Wrap LandmarkBasedTransformInitializer
>>>>>>>>> >> >>      BUG: Avoid potential exception in
>>>>>>>>> itk::Object::UnRegister
>>>>>>>>> >> >>      ENH: Update itkpng zlib, configuration, and rename
>>>>>>>>> >> >>      ENH: Update itkpng name mangling
>>>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>>>> ReferenceImage
>>>>>>>>> >> >> ivar
>>>>>>>>> >> >>      BUG: Increase tolerance for
>>>>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>>>>> >> >>      BUG: Demonstrate side effect on registration due to
>>>>>>>>> BSplineScatter
>>>>>>>>> >> >> change
>>>>>>>>> >> >>      ENH: Move MovingHistogramImageFilter base classes to
>>>>>>>>> >> >> ImageFilterBase
>>>>>>>>> >> >>      BUG: Avoid potential exception in
>>>>>>>>> itk::Object::UnRegister
>>>>>>>>> >> >>      BUG: Avoid null deference in PrintSelf with default
>>>>>>>>> construction
>>>>>>>>> >> >>      BUG: Use const pointer in Set method for constant
>>>>>>>>> ReferenceImage
>>>>>>>>> >> >> ivar
>>>>>>>>> >> >>      ENH: Optimize AdaptiveHistogramEqualization with
>>>>>>>>> MovingHistogram
>>>>>>>>> >> >> base
>>>>>>>>> >> >>      COMP: address sign unsigned comparison warning
>>>>>>>>> >> >>      COMP: Address signed unsigned comparison warning
>>>>>>>>> >> >>      COMP: Address unused member variable and methods in
>>>>>>>>> anonymous ns
>>>>>>>>> >> >>      BUG: Fix segfault when with empty IsolatedWatershed
>>>>>>>>> Threshold
>>>>>>>>> >> >> range
>>>>>>>>> >> >>      BUG: Adjust intensity tolerance for
>>>>>>>>> PhysicsBasedNonRigid test
>>>>>>>>> >> >>      BUG: Reduce number of targets with MSVC
>>>>>>>>> >> >>
>>>>>>>>> >> >> Davis Vigneault (7):
>>>>>>>>> >> >>      DOC: Minor improvements to segmentation examples.
>>>>>>>>> >> >>      DOC: Expanded Canny Edge Detection Example
>>>>>>>>> >> >>      DOC: Expanded TreeContainer Example
>>>>>>>>> >> >>      COMP: Warnings in itkVTKImageExport when compiling with
>>>>>>>>> c++11
>>>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>>>> >> >>      COMP: Update Git Tag for Subdivision Module
>>>>>>>>> >> >>      COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>>>>> >> >>
>>>>>>>>> >> >> D?enan Zuki? (1):
>>>>>>>>> >> >>      STYLE: better formatting of the "usage" message
>>>>>>>>> >> >>
>>>>>>>>> >> >> Eugene Prilepin (1):
>>>>>>>>> >> >>      BUG: Fix a template name formation in python wrappings
>>>>>>>>> >> >>
>>>>>>>>> >> >> Floris Berendsen (1):
>>>>>>>>> >> >>      STYLE: Improve naming conventions in comments.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Hans Johnson (29):
>>>>>>>>> >> >>      STYLE: Instrument for FixedParameters typedef
>>>>>>>>> >> >>      BUG: Demonstrate DisplacementTransformFailure
>>>>>>>>> >> >>      BUG: FixedParameters should be double precision
>>>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>>>> >> >>      ENH: Provide consistent floating point comparisons
>>>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>>>> >> >>      PERF: Remove floating point as sentinal value
>>>>>>>>> >> >>      COMP: Const correctness needs to be maintained
>>>>>>>>> >> >>      BUG: Preserve backwards compatibility
>>>>>>>>> >> >>      DOC: Provide consistent naming in comments
>>>>>>>>> >> >>      ENH: Conversion between transform type tolerance
>>>>>>>>> >> >>      STYLE: Prefer initialization to assignment
>>>>>>>>> >> >>      ENH: Missing ITK_OVERRIDE
>>>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>>>> >> >>      COMP: Need to propagate ITKGDCM
>>>>>>>>> >> >>      COMP: Add missing ITK_OVERRIDE
>>>>>>>>> >> >>      STYLE: Minor code style issues for MGHIO
>>>>>>>>> >> >>      COMP: Update to version for WikiExamples
>>>>>>>>> >> >>      ENH: Update Sphinx for ITK 4.8.0
>>>>>>>>> >> >>      ENH: Update MGHIO to be shared lib
>>>>>>>>> >> >>      BUG: Fix MGHIO to fix write failures
>>>>>>>>> >> >>      ENH: C++11 allows for rigorous =delete
>>>>>>>>> >> >>      COMP: Remove unnecessary failing assert test
>>>>>>>>> >> >>      ENH: Ignore internal files for the Clion editor
>>>>>>>>> >> >>      COMP: Fix VNL compilation for wider C++11 support
>>>>>>>>> >> >>      BUG: In configuration test need to mirror code
>>>>>>>>> >> >>
>>>>>>>>> >> >> Hyun Jae Kang (27):
>>>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>>>> >> >>      BUG: Avoid an unexpected output of static_cast
>>>>>>>>> >> >>      BUG: Update python example codes for ImageRegistration
>>>>>>>>> >> >>      BUG: Retrieve the missed wrap file
>>>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>>>> VTK file
>>>>>>>>> >> >> header.
>>>>>>>>> >> >>      BUG: Fix HDF5 CMake configuration with VS2015
>>>>>>>>> >> >>      BUG: Fix a compilation issue on ITK4 with FFTW and
>>>>>>>>> shared
>>>>>>>>> >> >> libraries
>>>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64 Mac
>>>>>>>>> OS X
>>>>>>>>> >> >>      BUG: Remove std::cout calls from class
>>>>>>>>> >> >>      BUG: itkVTKImageIO class does not handle blank lines in
>>>>>>>>> VTK file
>>>>>>>>> >> >> header.
>>>>>>>>> >> >>      BUG: Fixed older XCode linking error
>>>>>>>>> >> >>      ENH: Add automatic KWStyle build and configuration setup
>>>>>>>>> >> >>      COMP: KWStyle shadow, format-nonliteral and
>>>>>>>>> autological-compare
>>>>>>>>> >> >> warning.
>>>>>>>>> >> >>      COMP: Fixed the warning messages from itkGPU Module
>>>>>>>>> >> >>      COMP: Fixed a warning message of unused-private-field
>>>>>>>>> >> >>      COMP: Apply latest version of KWStyle
>>>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>>>> messages
>>>>>>>>> >> >>      COMP: Update KWStyle to fix its additional warning
>>>>>>>>> messages
>>>>>>>>> >> >>      COMP: Fix data-conversion warning messages on Windows
>>>>>>>>> >> >>      ENH: Update itkResourceProbe to calculate statistical
>>>>>>>>> data
>>>>>>>>> >> >>      COMP: Fix data-conversion warning messages on VS14
>>>>>>>>> >> >>      COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>>>>>> function
>>>>>>>>> >> >>      ENH: Update the Report() function of
>>>>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>>>>> >> >>      COMP: Fix data-conversion warning message on
>>>>>>>>> itkResourceProbe
>>>>>>>>> >> >>      COMP: Fix additional warning messages of KWStyle
>>>>>>>>> >> >>      COMP: Fix data-conversion warning messages
>>>>>>>>> >> >>
>>>>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>>>>> >> >>      ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>>>>> >> >>      BUG: Fix compilation issues for
>>>>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>>>>> >> >>      BUG: Fix comparison issues for
>>>>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>>>>> >> >>      BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>>>>> >> >>      ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>>>>>> >> >>      ENH: Improve code coverage for
>>>>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>>>>> >> >>
>>>>>>>>> >> >> Julien Michel (1):
>>>>>>>>> >> >>      ENH: Support of VectorImage as template parameters for
>>>>>>>>> >> >> WarpImageFilter
>>>>>>>>> >> >>
>>>>>>>>> >> >> Junjie Bai (2):
>>>>>>>>> >> >>      BUG: ConvertLabelMap with different LabelMapTypes
>>>>>>>>> >> >>      BUG: LabelObject CopyAttribute support different
>>>>>>>>> LabelObject type
>>>>>>>>> >> >>
>>>>>>>>> >> >> KWSys Robot (4):
>>>>>>>>> >> >>      KWSys 2015-07-10 (c9336bcf)
>>>>>>>>> >> >>      KWSys 2015-07-30 (f63febb7)
>>>>>>>>> >> >>      KWSys 2015-08-24 (cdaf522c)
>>>>>>>>> >> >>      KWSys 2015-08-28 (dc3fdd7f)
>>>>>>>>> >> >>
>>>>>>>>> >> >> LIBPNG Upstream (2):
>>>>>>>>> >> >>      PNG 2009-04-06 (e68f5a36)
>>>>>>>>> >> >>      PNG 2014-02-05 (3e753eb8)
>>>>>>>>> >> >>
>>>>>>>>> >> >> Laurentiu Nicola (2):
>>>>>>>>> >> >>      PERF: Avoid temporary smartptr in
>>>>>>>>> ProcessObject::GetInput
>>>>>>>>> >> >>      PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>>>>> bouncing
>>>>>>>>> >> >>
>>>>>>>>> >> >> Luc Hermitte (8):
>>>>>>>>> >> >>      PERF: itk::Image::GetPixel() performance improvment.
>>>>>>>>> >> >>      PERF: Performance enhancements on VariableLengthVectors
>>>>>>>>> 1/...
>>>>>>>>> >> >>      ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>>>>> >> >>      BUG: Error in VariableLengthVector Unit Tests
>>>>>>>>> >> >>      PERF: Performance enhancements on VLV 2/...
>>>>>>>>> >> >>      PERF: Performances enhancements on VLV 3/...
>>>>>>>>> >> >>      COMP: Fix signed/unsigned warnings
>>>>>>>>> >> >>      BUG: std::copy/fill on empty VLV
>>>>>>>>> >> >>
>>>>>>>>> >> >> Lucas Gandel (4):
>>>>>>>>> >> >>      ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>>>>> module.
>>>>>>>>> >> >>      BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>>>>>> Module
>>>>>>>>> >> >>      STYLE: Fix KWStyle dashboard errors
>>>>>>>>> >> >>      BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>>>>> >> >>
>>>>>>>>> >> >> Mathieu Malaterre (1):
>>>>>>>>> >> >>      BUG: Name mangle the included expat third party library.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Matthew McCormick (94):
>>>>>>>>> >> >>      ENH: Change itkSystemInformationTest to
>>>>>>>>> itkCMakeConfigurationTest.
>>>>>>>>> >> >>      ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>>>>> >> >>      ENH: Bump ITK version to 4.9.0.
>>>>>>>>> >> >>      BUG: Remove std::cout calls from classes.
>>>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>>>> ConditionVariableNoThreads.
>>>>>>>>> >> >>      BUG: Implement UpdateLargestPossibleRegion for
>>>>>>>>> >> >> ImageToVTKImageFilter.
>>>>>>>>> >> >>      COMP: Add link interface specification for wrapping
>>>>>>>>> >> >> target_link_libraries.
>>>>>>>>> >> >>      STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>>>>>> >> >>      COMP: Fix MINCTransformIO factory registration.
>>>>>>>>> >> >>      COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with
>>>>>>>>> Emscripten-1.
>>>>>>>>> >> >>      COMP: Remove unknown doxygen command in
>>>>>>>>> AnisotropicDiffusionLBR.
>>>>>>>>> >> >>      BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>>>>> >> >>      ENH: Use CastXML binaries when building with x86_64
>>>>>>>>> Linux.
>>>>>>>>> >> >>      STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>>>>>> >> >>      COMP: Disable the gold linker for static builds on
>>>>>>>>> Ubuntu 14.04.
>>>>>>>>> >> >>      ENH: Use Windows binaries for CastXML.
>>>>>>>>> >> >>      ENH: Add better scoping in igenerator.py.
>>>>>>>>> >> >>      BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja +
>>>>>>>>> MSVC.
>>>>>>>>> >> >>      BUG: LevelSetsv4 used signed char instead of char.
>>>>>>>>> >> >>      ENH: Add better scoping to idx.py.
>>>>>>>>> >> >>      COMP: Define newSize and oldSize in
>>>>>>>>> VariableLengthVector.
>>>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>>>> >> >>      ENH: Add more progress information to
>>>>>>>>> IterativeClosestPoint2.
>>>>>>>>> >> >>      BUG: Build BridgeNumPy with Visual Studio.
>>>>>>>>> >> >>      ENH: Add ITKModuleExternal.cmake
>>>>>>>>> >> >>      COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>>>>>> >> >>      BUG: Use CastXML binary built in Release.
>>>>>>>>> >> >>      BUG: ContinuousIndex should not be templated over
>>>>>>>>> TCoordRep.
>>>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>>>> >> >>      COMP: Address line length too long for Software Guide.
>>>>>>>>> >> >>      COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>>>>> >> >>      BUG: Support Python 3 wrapping module initialization.
>>>>>>>>> >> >>      BUG: Update itkTemplate.py for Python 3.
>>>>>>>>> >> >>      BUG: Update itkExtras.py for Python 3.
>>>>>>>>> >> >>      BUG: Prevent Python callback addition recursion.
>>>>>>>>> >> >>      BUG: Fix test scripts for Python 3.
>>>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>>> >> >>      ENH: Allow projects to build against an external module.
>>>>>>>>> >> >>      ENH: Replace CABLE_CONFIGURATION with
>>>>>>>>> ITK_WRAPPING_PARSER.
>>>>>>>>> >> >>      ENH: Rename _cable_ to _wrappers_.
>>>>>>>>> >> >>      BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>>> >> >>      BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>>>>> >> >>      COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>>>>> >> >>      BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>>>>> >> >>      ENH: Bump CastXML version to 2015-30-29.
>>>>>>>>> >> >>      ENH: Bump LLVM / Clang to 3.7.0.
>>>>>>>>> >> >>      COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>>>>>> >> >>      COMP: Add missing ITKIOImageBase dependency for
>>>>>>>>> ITKTransformMINC.
>>>>>>>>> >> >>      COMP: Use itkSimpleNewMacro in
>>>>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>>>>> >> >>      ENH: Add wrapping support for building modules
>>>>>>>>> externally.
>>>>>>>>> >> >>      BUG: Fix KWStyle test paths when building a module
>>>>>>>>> externally.
>>>>>>>>> >> >>      ENH: Add Cuberille Remote module.
>>>>>>>>> >> >>      COMP: Remove carriage returns from Cuberille remote.
>>>>>>>>> >> >>      COMP: Remove unused argument in
>>>>>>>>> ConditionVariableNoThreads.
>>>>>>>>> >> >>      DOC: Correct spelling of Continuous.
>>>>>>>>> >> >>      ENH: Bump the MinimalPathExtraction Remote to
>>>>>>>>> 2015-10-20.
>>>>>>>>> >> >>      COMP: Fix KernelTransform SetFixedParameters argument
>>>>>>>>> type.
>>>>>>>>> >> >>      STYLE: Use prefix increment operator in ImageBase.
>>>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>>> sys.path
>>>>>>>>> >> >>      Revert "COMP: Put vnl_export.h in the list of sources
>>>>>>>>> so it gets
>>>>>>>>> >> >> installed."
>>>>>>>>> >> >>      BUG: Revert "BUG: ConvertLabelMap with different
>>>>>>>>> LabelMapTypes"
>>>>>>>>> >> >>      ENH: Marking wrapping CMake configuration variables as
>>>>>>>>> advanced.
>>>>>>>>> >> >>      STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>>>>> >> >>      COMP: Non-virtual copy attribute members in LabelMap
>>>>>>>>> cannot have
>>>>>>>>> >> >> override.
>>>>>>>>> >> >>      COMP: Add wrapping for
>>>>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>>>>> >> >>      COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>>>>>> >> >>      ENH: Remove CMake version check in
>>>>>>>>> ITKModuleHeaderTest.cmake
>>>>>>>>> >> >>      BUG: Improve KWStyle ExternalProject utilization.
>>>>>>>>> >> >>      ENH: Remove old KWStyle build script.
>>>>>>>>> >> >>      COMP: Address VariableLengthVector Doxygen rhs @param
>>>>>>>>> not found.
>>>>>>>>> >> >>      ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>>>>> >> >>      ENH: Install Python bindings into site-packages.
>>>>>>>>> >> >>      ENH: Improve readability of Python site-packages path
>>>>>>>>> detection.
>>>>>>>>> >> >>      COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>>>>> expression
>>>>>>>>> >> >> warning.
>>>>>>>>> >> >>      BUG: ITKCommon publically depends on
>>>>>>>>> ITKDoubleConversion.
>>>>>>>>> >> >>      COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>>>>> >> >>      ENH: Improves names and export of module dependencies.
>>>>>>>>> >> >>      STYLE: Improve namespace bracket style in
>>>>>>>>> itkIsConvertible.
>>>>>>>>> >> >>      COMP: Set CMP0054 to new.
>>>>>>>>> >> >>      BUG: Remove unused wrapping files.
>>>>>>>>> >> >>      BUG: Do install install wrapping development files.
>>>>>>>>> >> >>      ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>>>>> >> >>      BUG: Remove duplicate inclusion of wrapping submodules.
>>>>>>>>> >> >>      COMP: Do not use C++ style comments for Doxygen cond.
>>>>>>>>> >> >>      BUG: Fix detection of the gold linker.
>>>>>>>>> >> >>      BUG: Update Python package installation locations.
>>>>>>>>> >> >>      ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>>>>> >> >>      ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>>>>> >> >>      BUG: Use 'from itk import ITKCommon' in module2module
>>>>>>>>> test.
>>>>>>>>> >> >>      COMP: Link to VTK Python when built with Kits support.
>>>>>>>>> >> >>      BUG: Install itk_minc2.h header.
>>>>>>>>> >> >>      COMP: ITKIOMINC has a public dependency on
>>>>>>>>> ITKIOImageBase.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Michka Popoff (9):
>>>>>>>>> >> >>      ENH: Update to swig 3.0.7
>>>>>>>>> >> >>      ENH: Do not link against specific Python library on OS X
>>>>>>>>> >> >>      COMP: Fix wrapping warnings when building with
>>>>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>>>>> >> >>      COMP: Add missing wrapping for TransformBase
>>>>>>>>> >> >>      COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>>> sys.path
>>>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>>>> wrapping
>>>>>>>>> >> >>      COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>>>>> >> >> ImageFilterBase
>>>>>>>>> >> >> module
>>>>>>>>> >> >>      COMP: Disable incompatible modules when using Python 3
>>>>>>>>> wrapping
>>>>>>>>> >> >>      ENH: Allow operations on Indexes and Offsets in Python
>>>>>>>>> >> >>
>>>>>>>>> >> >> Mikhail Isakov (1):
>>>>>>>>> >> >>      BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>>>>> baseline image
>>>>>>>>> >> >>
>>>>>>>>> >> >> Nick Tustison (5):
>>>>>>>>> >> >>      BUG:  Set a default b-spline epsilon.
>>>>>>>>> >> >>      ENH: Adding testing for closed loop.
>>>>>>>>> >> >>      BUG:  Updating B-spline classes with the same epsilon
>>>>>>>>> strategy.
>>>>>>>>> >> >>      PERF:  Switch vnl_vectors for fixed arrays.
>>>>>>>>> >> >>      ENH:  Point-set registration with time-varying B-spline.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Olivier Commowick (3):
>>>>>>>>> >> >>      BUG: Correct discrepancy in tridiagonal reduction wrt
>>>>>>>>> VNL eigen
>>>>>>>>> >> >> system
>>>>>>>>> >> >>      BUG: Correct under/overflows in vnl_math_hypot (taken
>>>>>>>>> from pythag
>>>>>>>>> >> >> from V3P)
>>>>>>>>> >> >>      BUG: Switch eigenvalues computation to double
>>>>>>>>> >> >>
>>>>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>>>>> >> >>      ENH: Help class for itkFlatStructuringElement with
>>>>>>>>> constructor
>>>>>>>>> >> >> from
>>>>>>>>> >> >> images.
>>>>>>>>> >> >>      COMP: Fix test errors and warnings in
>>>>>>>>> FlatStructuringElement.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Seun Odutola (1):
>>>>>>>>> >> >>      COMP: Fixed name clash with Apple header (check Macro),
>>>>>>>>> renamed
>>>>>>>>> >> >> check
>>>>>>>>> >> >> to Check
>>>>>>>>> >> >>
>>>>>>>>> >> >> Shawn Waldon (1):
>>>>>>>>> >> >>      COMP: Set target OS X version in environment for tools
>>>>>>>>> using
>>>>>>>>> >> >> compiler
>>>>>>>>> >> >>
>>>>>>>>> >> >> Simon Alexander (1):
>>>>>>>>> >> >>      BUG: incorrect closest point computation
>>>>>>>>> >> >>
>>>>>>>>> >> >> Tobias Wood (2):
>>>>>>>>> >> >>      BUG: LBFGSB was printing messages even with debug
>>>>>>>>> switched off.
>>>>>>>>> >> >>      BUG: Removed an unguarded print statement.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>>>>> >> >>      BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>>>>> >> >>      COMP: Changing the order of HDF5 library components
>>>>>>>>> >> >>      COMP: Splitting up IOMINC module into two parts: MINC
>>>>>>>>> and
>>>>>>>>> >> >> Transform
>>>>>>>>> >> >>      STYLE: updated comments to properly reference LIBMINC
>>>>>>>>> >> >>      ENH: Add script to merge upstream MINC as a subtree
>>>>>>>>> >> >>      MINC 2015-07-23 (c033d431)
>>>>>>>>> >> >>      COMP: Update MINC CMake code
>>>>>>>>> >> >>      MINC 2015-08-18 (6d7e3ba8)
>>>>>>>>> >> >>      MINC 2015-09-13 (95cd5374)
>>>>>>>>> >> >>
>>>>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>>>>> >> >>      DOC: update email address for xiaoxiao.
>>>>>>>>> >> >>
>>>>>>>>> >> >> Zach Williamson (10):
>>>>>>>>> >> >>      BUG: Use correct libraries for ImageFusion tests
>>>>>>>>> >> >>      ENH: Consolidate Library Dependencies
>>>>>>>>> >> >>      COMP: Add a missing link to Review module
>>>>>>>>> >> >>      COMP: Use correct linking macro in DCMTK
>>>>>>>>> >> >>      BUG: Use correct libraries for TestKernel tests
>>>>>>>>> >> >>      COMP: Fix inconsistant naming of
>>>>>>>>> GPUPDEDeformableRegistration
>>>>>>>>> >> >>      ENH: Use new linking system macros
>>>>>>>>> >> >>      PERF: Avoid searching private dependencies for include
>>>>>>>>> directories
>>>>>>>>> >> >>      COMP: Recover missing dependencies
>>>>>>>>> >> >>      ENH: use new linking macros in Filtering module
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >> -----------------------------------------------------
>>>>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> >> >>
>>>>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>>>>> >> >> _____________________________________
>>>>>>>>> >> >> Powered by www.kitware.com
>>>>>>>>> >> >>
>>>>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>>>>> >> >>
>>>>>>>>> >> >> Kitware offers ITK Training Courses, for more information
>>>>>>>>> visit:
>>>>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>>>>> >> >>
>>>>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>> >> >>
>>>>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>>>
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>
>>>>>>>
>>>>>>>> Powered by www.kitware.com
>>>>>>>>
>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>
>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>>
>>>>>>> http://kitware.com/products/protraining.php
>>>>>>>
>>>>>>>
>>>>>>>>
>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>
>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>>
>>>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>
>>>
>
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From matt.mccormick at kitware.com  Mon Nov 30 20:46:25 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 30 Nov 2015 20:46:25 -0500
Subject: [ITK] [ITK-dev] Lingering Valgrind defect
In-Reply-To: <CADZJ4hNP24QUsT3u3E18jPOWtPhB3ohDNmUzyzATAr7t+A4KfA@mail.gmail.com>
References: <CADZJ4hNT8Bv8Uni06ts-=Ajo3gdKNyTxoaLic9iezzhnP8rn0A@mail.gmail.com>
 <CADZJ4hNP24QUsT3u3E18jPOWtPhB3ohDNmUzyzATAr7t+A4KfA@mail.gmail.com>
Message-ID: <CALzTN-S8CTwKaCz4PYAJWdFuK7WCd37yYLNvaFEL79N0ta-hhw@mail.gmail.com>

Hi Bill,

Many thanks for stepping towards a clean Valgrind status!

I tried reproducing the dashboard errors locally, and I could not reproduce
them.  Were you able to reproduce them? What version of valgrind was used?

Thanks,
Matt



On Mon, Nov 30, 2015 at 1:36 PM, Bill Lorensen <bill.lorensen at gmail.com>
wrote:

> If I change the it.Value() and it2.Value() to it.Get() and it2.Get(),
> the defect goes away. Value() returns a reference. I suspect that the
> new comparisons are somehow accessing too much memory.
>
> I'll put a patch in with the replacement.
>
> Bill
>
> On Mon, Nov 30, 2015 at 12:31 PM, Bill Lorensen <bill.lorensen at gmail.com>
> wrote:
> > Folks,
> >
> > This gerrit commit in August
> > http://review.source.kitware.com/#/c/20081/
> >
> > is causing this valgrind defect:
> > https://open.cdash.org/viewDynamicAnalysisFile.php?id=3624555
> >
> > Related to the NotAlmostEquals access. If that is replaced with == the
> > defect gpoes away, but the test fails.
> >
> > If I understood how those new functions work, I might have been able
> > to give a solution.
> >
> > Bill
>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
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>
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From matt.mccormick at kitware.com  Mon Nov 30 22:19:54 2015
From: matt.mccormick at kitware.com (Matt McCormick)
Date: Mon, 30 Nov 2015 22:19:54 -0500
Subject: [ITK] [ITK-users] Own Transformation Class
In-Reply-To: <1448627334852-7588218.post@n2.nabble.com>
References: <1448627334852-7588218.post@n2.nabble.com>
Message-ID: <CALzTN-Q+2YsJjCZyj3o+N5OC5OCNCweqCKpY+6eJgwM5JUZsiA@mail.gmail.com>

Hello Dominik,


> I have been working on a project in Slicer which is about registering
> histology slices to an MRI volume of the same subject. So far everything
> was
> straight-forward but now the implemented registration algorithms in Slicer
> are coming to their limits and I think I have to write some of the stuff
> myself in ITK. I can use SimpleITK in python or the C++ version in Slicer
> depending on which plugin I want to write. The stuff I wrote so far is in
> Python but I think I can write another plugin in C++ just for the
> registration algorithm and execute this in my Python plugin.


Nice!



> So, now to the questions:
>
> - I'd like to constraint the registration algorithm because both modalities
> have a very robust feature which is the urethra. So I'd like the
> registration algorithm to stay as it is and just limit the transformation
> so
> the histology-urethra follows the MRI-urethra and the rotation center is in
> the urethra. I read in the slicers forum that I can write my own
> transformation class for this but I didn't have a lot of success so far so
> I'm thankful for more hints on how to write my own transformation class or
> any other solutions.
>

A new transformation can often be avoided by calling SetWeights() on the
optimizer as explained here [1]. This can be used to hold parameters
constant for a given transform during the optimization process.

However, it sounds like goal is to limit registration to information from a
particular region in the image (the urethra). To achieve this goal, you may
consider setting the Fixed and Moving image masks on the metric as
described here [2].


>
> - Once every histology slice is registered, I'd like to merge these slices
> to one. Is there an easy solution in ITK for this? I read the
> ResampleImageFilter is usable for this but so far I just understood that it
> resamples an image depending on how you transform it.
>

If every histology slice is registered independently, when they are merged
together there will be gaps and overlap in the histology slice locations.
Therefore, if a histology volume is desired, the histology slices could be
registered to each other first to generate a single histology slice volume,
then that volume is registered to the MRI volume.

Cheers,
Matt


[1]
http://www.itk.org/Doxygen/html/classitk_1_1ObjectToObjectOptimizerBaseTemplate.html


[2] http://www.itk.org/Doxygen/html/classitk_1_1ImageToImageMetricv4.html
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From itkhelpacc at gmail.com  Mon Nov 30 23:22:18 2015
From: itkhelpacc at gmail.com (vishal)
Date: Mon, 30 Nov 2015 21:22:18 -0700 (MST)
Subject: [ITK] [ITK-users] Examples for ITK-based 2D/3D registration
In-Reply-To: <CALzTN-QQjvfGujLBW8-82epLmVsTgxwQnc3WP3JSbU9-HFDw0Q@mail.gmail.com>
References: <5E843F0B86B47846B72559B57A54F96217BE836658@MBX02.ad.uni-heidelberg.de>
 <CALzTN-QQjvfGujLBW8-82epLmVsTgxwQnc3WP3JSbU9-HFDw0Q@mail.gmail.com>
Message-ID: <1448943738317-36519.post@n7.nabble.com>

hi Matt,
im planning to use "itk based framework for 2d/3d registration with multiple
fixed images by A. Bertelsen" in my project but this journal is written in
ITK 3.20.0... but im using ITK 4.7.0.. i was wondering if this will be an
issue....if it is how can i convert the V3 code to V4..
regards
Vishal



--
View this message in context: http://itk-users.7.n7.nabble.com/ITK-users-Examples-for-ITK-based-2D-3D-registration-tp35337p36519.html
Sent from the ITK - Users mailing list archive at Nabble.com.
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From a.tunde.szilagyi at gmail.com  Thu Nov 12 09:51:24 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Thu, 12 Nov 2015 14:51:24 -0000
Subject: [ITK] Fwd:  Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
Message-ID: <CAMeM8yY-AJHKE5dUbocFjEP+fhV4GYJUaMRKrZMk2U4eri4+OA@mail.gmail.com>

Hi Matt,

I have pulled the suggested patch, but I am having the error message
attached. I would appreciate any feedback from anyone.

Many thanks in advance.

Best wishes,
Tunde


On 5 November 2015 at 21:04, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Tunde,
>
> These CMake warnings are addressed by this patch:
>
>   http://review.source.kitware.com/#/c/20154/1
>
> which I just backported to the "release" branch. Please 'git pull' to
> fetch the changes.
>
> Please let the list know if there are any other issues.  According to
> the dashboard, there are also some warnings to address:
>
>    https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
>
> Patches for these warnings would be welcome :-)
>
> Thanks,
> Matt
>
> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
> <a.tunde.szilagyi at gmail.com> wrote:
> > Hi Matt,
> >
> > Thank you, this fixed some of the problems I was facing. Now I can build
> > some packages except the ITKNumerics, ITKStatistics and ITKFEM. I have
> > attached the error message that I received in CMAKE. There are no
> > explanations in the MS VS 2015 during build.
> >
> > Many thanks in advance.
> >
> > Tunde
>
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From a.tunde.szilagyi at gmail.com  Thu Nov 12 14:52:05 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Thu, 12 Nov 2015 19:52:05 -0000
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
 <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
Message-ID: <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>

Hi Matt,

Many thanks. I went through the suggested routes (see attachment). I am
certain that I am doing something wrong (but I do not understand what it
might be), because I am getting similar error messages.

Many thanks.
Tunde

On 12 November 2015 at 19:33, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Tunde,
>
> I mistakenly thought you were working on the "release" branch, so I
> expected the commands to run would be
>
>   git checkout release
>   git pull
>
> If you were not working on the release branch, it can be created locally
> with
>
>   git checkout -b release origin/release
>   git pull
>
> It is possible to also directly get the patch from Gerrit, but not do
> use the 'pull' line for this case.  Instead, use the 'checkout' line,
> i.e.
>
>   git fetch http://review.source.kitware.com/ITK
> refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054
>
> Note that "-b CMP0054" was added to give a branch name.
>
> But, the 4.8.2 archives were just created from the latest "release"
> branch, so those can be tried too:
>
>   https://sourceforge.net/projects/itk/files/itk/4.8/
>
>
> Thanks for testing and providing feedback.
>
> Matt
>
> On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
> <a.tunde.szilagyi at gmail.com> wrote:
> > Hi Matt,
> >
> > I have pulled the suggested patch, but I am having the error message
> > attached. I would appreciate any feedback from anyone.
> >
> > Many thanks in advance.
> >
> > Best wishes,
> > Tunde
> >
> > On 5 November 2015 at 21:04, Matt McCormick <matt.mccormick at kitware.com>
> > wrote:
> >>
> >> Hi Tunde,
> >>
> >> These CMake warnings are addressed by this patch:
> >>
> >>   http://review.source.kitware.com/#/c/20154/1
> >>
> >> which I just backported to the "release" branch. Please 'git pull' to
> >> fetch the changes.
> >>
> >> Please let the list know if there are any other issues.  According to
> >> the dashboard, there are also some warnings to address:
> >>
> >>    https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
> >>
> >> Patches for these warnings would be welcome :-)
> >>
> >> Thanks,
> >> Matt
> >>
> >> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> > Hi Matt,
> >> >
> >> > Thank you, this fixed some of the problems I was facing. Now I can
> build
> >> > some packages except the ITKNumerics, ITKStatistics and ITKFEM. I have
> >> > attached the error message that I received in CMAKE. There are no
> >> > explanations in the MS VS 2015 during build.
> >> >
> >> > Many thanks in advance.
> >> >
> >> > Tunde
> >> >
> >> >
> >> > On 5 November 2015 at 16:22, Matt McCormick <
> matt.mccormick at kitware.com>
> >> > wrote:
> >> >>
> >> >> Hi Tunde,
> >> >>
> >> >> A few pointers:
> >> >>
> >> >> - Use ITK Git master [1], which has support for Visual Studio 2015
> >> >> (support is not available in ITK 4.8.1).
> >> >> - If wrapping is built, ITK Git master also builds much faster.
> >> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
> >> >> configuration to greatly improve the build time.
> >> >>
> >> >> HTH,
> >> >> Matt
> >> >>
> >> >> [1] http://www.itk.org/Wiki/ITK/Git
> >> >>
> >> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
> >> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> >> > Dear Brad,
> >> >> >
> >> >> > Thank you for your feedback. I figured out that my error occurs
> >> >> > during
> >> >> > CMake
> >> >> > Configuration. I have attached an error message that I receive.
> Files
> >> >> > from
> >> >> > the same family are throwing this error - all start with
> >> >> > cmTC_XXXXX.exe
> >> >> > (see
> >> >> > attached Screen Shoot). If I ignore this and Build All in MS Visual
> >> >> > Studio
> >> >> > the Debug and Release is not populated (And there are no error
> >> >> > messages
> >> >> > either.). I would appreciate any insight into this.
> >> >> >
> >> >> > Many thanks.
> >> >> > Tunde
> >> >> >
> >> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
> >> >> > <blowekamp at mail.nih.gov>
> >> >> > wrote:
> >> >> >>
> >> >> >> Hello,
> >> >> >>
> >> >> >> I don't think I have built ITK with the MS VS 12 2015 GUI. But I
> do
> >> >> >> have a
> >> >> >> dashboard build with the compiler:
> >> >> >>
> >> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
> >> >> >>
> >> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual machine.
> >> >> >>
> >> >> >> Perhaps you could try building from the command line with cmake?
> >> >> >>
> >> >> >> cmake --build . --config Release
> >> >> >>
> >> >> >>
> >> >> >>
> >> >> >> HTH,
> >> >> >> Brad
> >> >> >>
> >> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
> >> >> >> <a.tunde.szilagyi at gmail.com>
> >> >> >> wrote:
> >> >> >>
> >> >> >> Dear All,
> >> >> >>
> >> >> >> I would be interested what is the expected time to build all the
> ITK
> >> >> >> libraries for the first time in Microsoft Visual Studio 14 2015.
> It
> >> >> >> shows me
> >> >> >> that there 492 projects to build. It has been running for more
> then
> >> >> >> 17h
> >> >> >> on a
> >> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error
> message.
> >> >> >> Perhaps
> >> >> >> I misunderstood this process?
> >> >> >>
> >> >> >> Many thanks.
> >> >> >>
> >> >> >> Best wishes,
> >> >> >> Tunde Szilagyi
> >> >> >> _______________________________________________
> >> >> >> Community mailing list
> >> >> >> Community at itk.org
> >> >> >> http://public.kitware.com/mailman/listinfo/community
> >> >> >>
> >> >> >>
> >> >> >
> >> >> >
> >> >> >
> >> >> > _______________________________________________
> >> >> > Community mailing list
> >> >> > Community at itk.org
> >> >> > http://public.kitware.com/mailman/listinfo/community
> >> >> >
> >> >
> >> >
> >
> >
>



-- 
--
Tunde
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From a.tunde.szilagyi at gmail.com  Thu Nov 12 15:14:44 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Thu, 12 Nov 2015 20:14:44 -0000
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CALzTN-THQzM4cuG8kmJAtCtZuB3hpL6J6Y-iDsVmVbjGsF1k=w@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
 <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
 <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>
 <CALzTN-THQzM4cuG8kmJAtCtZuB3hpL6J6Y-iDsVmVbjGsF1k=w@mail.gmail.com>
Message-ID: <CAMeM8yYrCg1AVkXoPW=okOX5UdL73EX92V=MJiKRZ66kFktwfQ@mail.gmail.com>

Hi Matt,

Many thanks. Unfortunately the suggested command did not solve the problem,
see attachment.

Many thanks.
Tunde

On 12 November 2015 at 21:05, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi Tunde,
>
> The prompt indicates the repository is an intermediate state
> (MERGING), and git is not allowing the requested actions because it
> does not want changes made in that intermediate state to get lost.
>
> To get out of the intermediate state, use
>
>   git reset --hard origin/master
>
> then try again.
>
> HTH,
> Matt
>
> On Thu, Nov 12, 2015 at 2:52 PM, T?nde Szil?gyi
> <a.tunde.szilagyi at gmail.com> wrote:
> > Hi Matt,
> >
> > Many thanks. I went through the suggested routes (see attachment). I am
> > certain that I am doing something wrong (but I do not understand what it
> > might be), because I am getting similar error messages.
> >
> > Many thanks.
> > Tunde
> >
> > On 12 November 2015 at 19:33, Matt McCormick <matt.mccormick at kitware.com
> >
> > wrote:
> >>
> >> Hi Tunde,
> >>
> >> I mistakenly thought you were working on the "release" branch, so I
> >> expected the commands to run would be
> >>
> >>   git checkout release
> >>   git pull
> >>
> >> If you were not working on the release branch, it can be created locally
> >> with
> >>
> >>   git checkout -b release origin/release
> >>   git pull
> >>
> >> It is possible to also directly get the patch from Gerrit, but not do
> >> use the 'pull' line for this case.  Instead, use the 'checkout' line,
> >> i.e.
> >>
> >>   git fetch http://review.source.kitware.com/ITK
> >> refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054
> >>
> >> Note that "-b CMP0054" was added to give a branch name.
> >>
> >> But, the 4.8.2 archives were just created from the latest "release"
> >> branch, so those can be tried too:
> >>
> >>   https://sourceforge.net/projects/itk/files/itk/4.8/
> >>
> >>
> >> Thanks for testing and providing feedback.
> >>
> >> Matt
> >>
> >> On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> > Hi Matt,
> >> >
> >> > I have pulled the suggested patch, but I am having the error message
> >> > attached. I would appreciate any feedback from anyone.
> >> >
> >> > Many thanks in advance.
> >> >
> >> > Best wishes,
> >> > Tunde
> >> >
> >> > On 5 November 2015 at 21:04, Matt McCormick <
> matt.mccormick at kitware.com>
> >> > wrote:
> >> >>
> >> >> Hi Tunde,
> >> >>
> >> >> These CMake warnings are addressed by this patch:
> >> >>
> >> >>   http://review.source.kitware.com/#/c/20154/1
> >> >>
> >> >> which I just backported to the "release" branch. Please 'git pull' to
> >> >> fetch the changes.
> >> >>
> >> >> Please let the list know if there are any other issues.  According to
> >> >> the dashboard, there are also some warnings to address:
> >> >>
> >> >>    https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
> >> >>
> >> >> Patches for these warnings would be welcome :-)
> >> >>
> >> >> Thanks,
> >> >> Matt
> >> >>
> >> >> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
> >> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> >> > Hi Matt,
> >> >> >
> >> >> > Thank you, this fixed some of the problems I was facing. Now I can
> >> >> > build
> >> >> > some packages except the ITKNumerics, ITKStatistics and ITKFEM. I
> >> >> > have
> >> >> > attached the error message that I received in CMAKE. There are no
> >> >> > explanations in the MS VS 2015 during build.
> >> >> >
> >> >> > Many thanks in advance.
> >> >> >
> >> >> > Tunde
> >> >> >
> >> >> >
> >> >> > On 5 November 2015 at 16:22, Matt McCormick
> >> >> > <matt.mccormick at kitware.com>
> >> >> > wrote:
> >> >> >>
> >> >> >> Hi Tunde,
> >> >> >>
> >> >> >> A few pointers:
> >> >> >>
> >> >> >> - Use ITK Git master [1], which has support for Visual Studio 2015
> >> >> >> (support is not available in ITK 4.8.1).
> >> >> >> - If wrapping is built, ITK Git master also builds much faster.
> >> >> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
> >> >> >> configuration to greatly improve the build time.
> >> >> >>
> >> >> >> HTH,
> >> >> >> Matt
> >> >> >>
> >> >> >> [1] http://www.itk.org/Wiki/ITK/Git
> >> >> >>
> >> >> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
> >> >> >> <a.tunde.szilagyi at gmail.com> wrote:
> >> >> >> > Dear Brad,
> >> >> >> >
> >> >> >> > Thank you for your feedback. I figured out that my error occurs
> >> >> >> > during
> >> >> >> > CMake
> >> >> >> > Configuration. I have attached an error message that I receive.
> >> >> >> > Files
> >> >> >> > from
> >> >> >> > the same family are throwing this error - all start with
> >> >> >> > cmTC_XXXXX.exe
> >> >> >> > (see
> >> >> >> > attached Screen Shoot). If I ignore this and Build All in MS
> >> >> >> > Visual
> >> >> >> > Studio
> >> >> >> > the Debug and Release is not populated (And there are no error
> >> >> >> > messages
> >> >> >> > either.). I would appreciate any insight into this.
> >> >> >> >
> >> >> >> > Many thanks.
> >> >> >> > Tunde
> >> >> >> >
> >> >> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
> >> >> >> > <blowekamp at mail.nih.gov>
> >> >> >> > wrote:
> >> >> >> >>
> >> >> >> >> Hello,
> >> >> >> >>
> >> >> >> >> I don't think I have built ITK with the MS VS 12 2015 GUI. But
> I
> >> >> >> >> do
> >> >> >> >> have a
> >> >> >> >> dashboard build with the compiler:
> >> >> >> >>
> >> >> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
> >> >> >> >>
> >> >> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual
> machine.
> >> >> >> >>
> >> >> >> >> Perhaps you could try building from the command line with
> cmake?
> >> >> >> >>
> >> >> >> >> cmake --build . --config Release
> >> >> >> >>
> >> >> >> >>
> >> >> >> >>
> >> >> >> >> HTH,
> >> >> >> >> Brad
> >> >> >> >>
> >> >> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
> >> >> >> >> <a.tunde.szilagyi at gmail.com>
> >> >> >> >> wrote:
> >> >> >> >>
> >> >> >> >> Dear All,
> >> >> >> >>
> >> >> >> >> I would be interested what is the expected time to build all
> the
> >> >> >> >> ITK
> >> >> >> >> libraries for the first time in Microsoft Visual Studio 14
> 2015.
> >> >> >> >> It
> >> >> >> >> shows me
> >> >> >> >> that there 492 projects to build. It has been running for more
> >> >> >> >> then
> >> >> >> >> 17h
> >> >> >> >> on a
> >> >> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error
> >> >> >> >> message.
> >> >> >> >> Perhaps
> >> >> >> >> I misunderstood this process?
> >> >> >> >>
> >> >> >> >> Many thanks.
> >> >> >> >>
> >> >> >> >> Best wishes,
> >> >> >> >> Tunde Szilagyi
> >> >> >> >> _______________________________________________
> >> >> >> >> Community mailing list
> >> >> >> >> Community at itk.org
> >> >> >> >> http://public.kitware.com/mailman/listinfo/community
> >> >> >> >>
> >> >> >> >>
> >> >> >> >
> >> >> >> >
> >> >> >> >
> >> >> >> > _______________________________________________
> >> >> >> > Community mailing list
> >> >> >> > Community at itk.org
> >> >> >> > http://public.kitware.com/mailman/listinfo/community
> >> >> >> >
> >> >> >
> >> >> >
> >> >
> >> >
> >
> >
> >
> >
> > --
> > --
> > Tunde
>



-- 
--
Tunde
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From a.tunde.szilagyi at gmail.com  Thu Nov 12 15:32:21 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Thu, 12 Nov 2015 20:32:21 -0000
Subject: [ITK] Fwd: BUILD-ALL ITK RUN time?
In-Reply-To: <CAJFNcCQjn-T-LWzsiRpsp7vFoK5nMEm9YOfvCNJ64U8pME=HAg@mail.gmail.com>
References: <CAMeM8yYpS3_iJW=Aj8g+tOc=t95A69kiERmko0ha5C4nmjWAZw@mail.gmail.com>
 <0DB9A45F-BEA6-4A5D-AACF-05F594DF673A@mail.nih.gov>
 <CAMeM8ybsn01+3e1MZm9BuGhN68hCVcZb1RhmO=mnXcOkiE3+OQ@mail.gmail.com>
 <CAMeM8yZg3yr8b1rvu2AKCRDSNG_1w7GNrHXY2A90j8GQ0xYAFw@mail.gmail.com>
 <CALzTN-R-so3mDYNnYViaWrDCsq2889KgM9uwkG5AGPhr7t3i9g@mail.gmail.com>
 <CAMeM8yZRDtqXSrARcd6=X4bL90DgBoV+Whvd0rW2dr2Y5dbfRA@mail.gmail.com>
 <CALzTN-THNwJj6+59LNiptk15Ge87edSTUHEyqnRJ1jWYb87Vtg@mail.gmail.com>
 <CAMeM8yZ75xfTfaEL=gVkmx1gdiTvxttsPK+iOUjT3-1jYMvKdg@mail.gmail.com>
 <CALzTN-RsW5ZUQrzgGUbNZp8DgxTd_gRbtNmVZC-09TGtsE0r5Q@mail.gmail.com>
 <CAMeM8yaTsQYB4o+Z8_Pfm4irK3ASyZr5F-kf-WKPieOfs_JKJg@mail.gmail.com>
 <CALzTN-THQzM4cuG8kmJAtCtZuB3hpL6J6Y-iDsVmVbjGsF1k=w@mail.gmail.com>
 <CAMeM8yYrCg1AVkXoPW=okOX5UdL73EX92V=MJiKRZ66kFktwfQ@mail.gmail.com>
 <CAJFNcCQjn-T-LWzsiRpsp7vFoK5nMEm9YOfvCNJ64U8pME=HAg@mail.gmail.com>
Message-ID: <CAMeM8yYvb59L4ygUETt0rmw6mXt1XeRM+EkjGp9d=KEEd9BXPQ@mail.gmail.com>

Simon, many thanks that worked! I have attached the new set of feedback
that I have received. I assume this is all fine..

On 12 November 2015 at 21:27, Simon Alexander <skalexander at gmail.com> wrote:

> Matt, should that be a "git reset --merge" ?
>
>
> On Thu, 12 Nov 2015 at 15:14 T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
> wrote:
>
>> Hi Matt,
>>
>> Many thanks. Unfortunately the suggested command did not solve the
>> problem, see attachment.
>>
>> Many thanks.
>> Tunde
>>
>> On 12 November 2015 at 21:05, Matt McCormick <matt.mccormick at kitware.com>
>> wrote:
>>
>>> Hi Tunde,
>>>
>>> The prompt indicates the repository is an intermediate state
>>> (MERGING), and git is not allowing the requested actions because it
>>> does not want changes made in that intermediate state to get lost.
>>>
>>> To get out of the intermediate state, use
>>>
>>>   git reset --hard origin/master
>>>
>>> then try again.
>>>
>>> HTH,
>>> Matt
>>>
>>> On Thu, Nov 12, 2015 at 2:52 PM, T?nde Szil?gyi
>>> <a.tunde.szilagyi at gmail.com> wrote:
>>> > Hi Matt,
>>> >
>>> > Many thanks. I went through the suggested routes (see attachment). I am
>>> > certain that I am doing something wrong (but I do not understand what
>>> it
>>> > might be), because I am getting similar error messages.
>>> >
>>> > Many thanks.
>>> > Tunde
>>> >
>>> > On 12 November 2015 at 19:33, Matt McCormick <
>>> matt.mccormick at kitware.com>
>>> > wrote:
>>> >>
>>> >> Hi Tunde,
>>> >>
>>> >> I mistakenly thought you were working on the "release" branch, so I
>>> >> expected the commands to run would be
>>> >>
>>> >>   git checkout release
>>> >>   git pull
>>> >>
>>> >> If you were not working on the release branch, it can be created
>>> locally
>>> >> with
>>> >>
>>> >>   git checkout -b release origin/release
>>> >>   git pull
>>> >>
>>> >> It is possible to also directly get the patch from Gerrit, but not do
>>> >> use the 'pull' line for this case.  Instead, use the 'checkout' line,
>>> >> i.e.
>>> >>
>>> >>   git fetch http://review.source.kitware.com/ITK
>>> >> refs/changes/54/20154/1 && git checkout FETCH_HEAD -b CMP0054
>>> >>
>>> >> Note that "-b CMP0054" was added to give a branch name.
>>> >>
>>> >> But, the 4.8.2 archives were just created from the latest "release"
>>> >> branch, so those can be tried too:
>>> >>
>>> >>   https://sourceforge.net/projects/itk/files/itk/4.8/
>>> >>
>>> >>
>>> >> Thanks for testing and providing feedback.
>>> >>
>>> >> Matt
>>> >>
>>> >> On Thu, Nov 12, 2015 at 9:32 AM, T?nde Szil?gyi
>>> >> <a.tunde.szilagyi at gmail.com> wrote:
>>> >> > Hi Matt,
>>> >> >
>>> >> > I have pulled the suggested patch, but I am having the error message
>>> >> > attached. I would appreciate any feedback from anyone.
>>> >> >
>>> >> > Many thanks in advance.
>>> >> >
>>> >> > Best wishes,
>>> >> > Tunde
>>> >> >
>>> >> > On 5 November 2015 at 21:04, Matt McCormick <
>>> matt.mccormick at kitware.com>
>>> >> > wrote:
>>> >> >>
>>> >> >> Hi Tunde,
>>> >> >>
>>> >> >> These CMake warnings are addressed by this patch:
>>> >> >>
>>> >> >>   http://review.source.kitware.com/#/c/20154/1
>>> >> >>
>>> >> >> which I just backported to the "release" branch. Please 'git pull'
>>> to
>>> >> >> fetch the changes.
>>> >> >>
>>> >> >> Please let the list know if there are any other issues.  According
>>> to
>>> >> >> the dashboard, there are also some warnings to address:
>>> >> >>
>>> >> >>
>>> https://open.cdash.org/viewBuildError.php?type=1&buildid=4088244
>>> >> >>
>>> >> >> Patches for these warnings would be welcome :-)
>>> >> >>
>>> >> >> Thanks,
>>> >> >> Matt
>>> >> >>
>>> >> >> On Thu, Nov 5, 2015 at 2:47 PM, T?nde Szil?gyi
>>> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>>> >> >> > Hi Matt,
>>> >> >> >
>>> >> >> > Thank you, this fixed some of the problems I was facing. Now I
>>> can
>>> >> >> > build
>>> >> >> > some packages except the ITKNumerics, ITKStatistics and ITKFEM. I
>>> >> >> > have
>>> >> >> > attached the error message that I received in CMAKE. There are no
>>> >> >> > explanations in the MS VS 2015 during build.
>>> >> >> >
>>> >> >> > Many thanks in advance.
>>> >> >> >
>>> >> >> > Tunde
>>> >> >> >
>>> >> >> >
>>> >> >> > On 5 November 2015 at 16:22, Matt McCormick
>>> >> >> > <matt.mccormick at kitware.com>
>>> >> >> > wrote:
>>> >> >> >>
>>> >> >> >> Hi Tunde,
>>> >> >> >>
>>> >> >> >> A few pointers:
>>> >> >> >>
>>> >> >> >> - Use ITK Git master [1], which has support for Visual Studio
>>> 2015
>>> >> >> >> (support is not available in ITK 4.8.1).
>>> >> >> >> - If wrapping is built, ITK Git master also builds much faster.
>>> >> >> >> - Turn off BUILD_TESTING and BUILD_EXAMPLES in your CMake
>>> >> >> >> configuration to greatly improve the build time.
>>> >> >> >>
>>> >> >> >> HTH,
>>> >> >> >> Matt
>>> >> >> >>
>>> >> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>> >> >> >>
>>> >> >> >> On Thu, Nov 5, 2015 at 7:03 AM, T?nde Szil?gyi
>>> >> >> >> <a.tunde.szilagyi at gmail.com> wrote:
>>> >> >> >> > Dear Brad,
>>> >> >> >> >
>>> >> >> >> > Thank you for your feedback. I figured out that my error
>>> occurs
>>> >> >> >> > during
>>> >> >> >> > CMake
>>> >> >> >> > Configuration. I have attached an error message that I
>>> receive.
>>> >> >> >> > Files
>>> >> >> >> > from
>>> >> >> >> > the same family are throwing this error - all start with
>>> >> >> >> > cmTC_XXXXX.exe
>>> >> >> >> > (see
>>> >> >> >> > attached Screen Shoot). If I ignore this and Build All in MS
>>> >> >> >> > Visual
>>> >> >> >> > Studio
>>> >> >> >> > the Debug and Release is not populated (And there are no error
>>> >> >> >> > messages
>>> >> >> >> > either.). I would appreciate any insight into this.
>>> >> >> >> >
>>> >> >> >> > Many thanks.
>>> >> >> >> > Tunde
>>> >> >> >> >
>>> >> >> >> > On 5 November 2015 at 12:55, Bradley Lowekamp
>>> >> >> >> > <blowekamp at mail.nih.gov>
>>> >> >> >> > wrote:
>>> >> >> >> >>
>>> >> >> >> >> Hello,
>>> >> >> >> >>
>>> >> >> >> >> I don't think I have built ITK with the MS VS 12 2015 GUI.
>>> But I
>>> >> >> >> >> do
>>> >> >> >> >> have a
>>> >> >> >> >> dashboard build with the compiler:
>>> >> >> >> >>
>>> >> >> >> >> https://open.cdash.org/buildSummary.php?buildid=4088244
>>> >> >> >> >>
>>> >> >> >> >> This take about 3 hours, on a 4 core 4 GB memory virtual
>>> machine.
>>> >> >> >> >>
>>> >> >> >> >> Perhaps you could try building from the command line with
>>> cmake?
>>> >> >> >> >>
>>> >> >> >> >> cmake --build . --config Release
>>> >> >> >> >>
>>> >> >> >> >>
>>> >> >> >> >>
>>> >> >> >> >> HTH,
>>> >> >> >> >> Brad
>>> >> >> >> >>
>>> >> >> >> >> On Nov 5, 2015, at 5:11 AM, T?nde Szil?gyi
>>> >> >> >> >> <a.tunde.szilagyi at gmail.com>
>>> >> >> >> >> wrote:
>>> >> >> >> >>
>>> >> >> >> >> Dear All,
>>> >> >> >> >>
>>> >> >> >> >> I would be interested what is the expected time to build all
>>> the
>>> >> >> >> >> ITK
>>> >> >> >> >> libraries for the first time in Microsoft Visual Studio 14
>>> 2015.
>>> >> >> >> >> It
>>> >> >> >> >> shows me
>>> >> >> >> >> that there 492 projects to build. It has been running for
>>> more
>>> >> >> >> >> then
>>> >> >> >> >> 17h
>>> >> >> >> >> on a
>>> >> >> >> >> 2.84 GHz CPU, using 4.6 out of 7.9 GB memory without error
>>> >> >> >> >> message.
>>> >> >> >> >> Perhaps
>>> >> >> >> >> I misunderstood this process?
>>> >> >> >> >>
>>> >> >> >> >> Many thanks.
>>> >> >> >> >>
>>> >> >> >> >> Best wishes,
>>> >> >> >> >> Tunde Szilagyi
>>> >> >> >> >> _______________________________________________
>>> >> >> >> >> Community mailing list
>>> >> >> >> >> Community at itk.org
>>> >> >> >> >> http://public.kitware.com/mailman/listinfo/community
>>> >> >> >> >>
>>> >> >> >> >>
>>> >> >> >> >
>>> >> >> >> >
>>> >> >> >> >
>>> >> >> >> > _______________________________________________
>>> >> >> >> > Community mailing list
>>> >> >> >> > Community at itk.org
>>> >> >> >> > http://public.kitware.com/mailman/listinfo/community
>>> >> >> >> >
>>> >> >> >
>>> >> >> >
>>> >> >
>>> >> >
>>> >
>>> >
>>> >
>>> >
>>> > --
>>> > --
>>> > Tunde
>>>
>>
>>
>>
>> --
>> --
>> Tunde
>>
>


-- 
--
Tunde
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From a.tunde.szilagyi at gmail.com  Tue Nov 17 19:19:39 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Wed, 18 Nov 2015 00:19:39 -0000
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
Message-ID: <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>

During CMake I am getting the attached error message. All the error
messages I receive is with reference to exe files starting with
cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
this (http://review.source.kitware.com/#/c/20154/1 - Checkout), but this
still results in the same error messages as before. I have attached one of
the error messages that appear during CMake project configuration.

Many thanks.

On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com> wrote:

> Master branch from git://itk.org/ITK.git
>
> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
> a.tunde.szilagyi at gmail.com> wrote:
>
>> Which ITK version did you use?
>>
>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> This configuration compiles fine in debug too.
>>>
>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> Hi T?nde,
>>>>
>>>> checking out *master* branch and CMake configuration went fine. To
>>>> speed up compile time, I disabled building of examples and testing. I also
>>>> enabled ITK_LEGACY_REMOVE. I did not enable Module_ITKVtkGlue.
>>>>
>>>> Opening the solution file in VS2015 was fairly slow - it might have
>>>> something to do with the fact I just installed it. Building in Release x64
>>>> finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>
>>>> Regards,
>>>> D?enan
>>>>
>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>
>>>>> Hi Everyone,
>>>>>
>>>>> I would be interested whether anyone has managed to build the ITK
>>>>> Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>
>>>>> Many thanks.
>>>>> Tunde
>>>>>
>>>>> _______________________________________________
>>>>> Community mailing list
>>>>> Community at itk.org
>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>
>>>>>
>>>>
>>>
>>
>>
>> --
>> --
>> Tunde
>>
>
>


-- 
--
Tunde
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From a.tunde.szilagyi at gmail.com  Tue Nov 17 20:48:48 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Wed, 18 Nov 2015 01:48:48 -0000
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
 <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
 <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
Message-ID: <CAMeM8ybB63YB6y=EzVVR8k1CgDVKV-VU-FwOixjZ13-EMm=J1g@mail.gmail.com>

I have attached screenshots with the different steps:
- STEP_1_2.PNG - shows the cloning and CMake selection
- STEP_3.PNG - shows that this version fails during the configuration step
- STEP_4.PNG - shows the Git Bash window where I fetched the (Matt, 1st
September) patch
- STEP_5.PNG - shows that now it configures, but I also get the error
messages as shown on the LHS.

Any ideas welcome. Since I am getting the same type of error messages it
means that I have a systematic error somewhere in the project generation
loop.

Many thanks in advance.

On 18 November 2015 at 02:12, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
wrote:

> I have tried without the patch, but I am receiving the same error message.
> My generator is VS 14 2015 (see CMake window on the LHS).
>
> Now, I have cleaned everything and started with a fresh installation:
> - Git Bash
> - CMake
> - ITK master
>
> I realized that only Win32 CMake exists on the official website:
> https://cmake.org/download/
>
> Is this what you refer to in your e-mail below? What else would you
> recommend?
>
> Many thanks.
>
>
> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> That patch was merged to master, so you don't need to apply it.
>>
>> I used VS2015 *Win64* as the generator. You seem to be using *Win32*,
>> that might make a difference.
>>
>> I used version 3.3.1, which I installed some time ago. You are using
>> release candidate version - I doubt that is the reason.
>>
>> Can you try a clean clone (git clone git://itk.org/ITK.git), and then
>> building into a clean directory?
>>
>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>> a.tunde.szilagyi at gmail.com> wrote:
>>
>>> During CMake I am getting the attached error message. All the error
>>> messages I receive is with reference to exe files starting with
>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>> this (http://review.source.kitware.com/#/c/20154/1 - Checkout), but
>>> this still results in the same error messages as before. I have attached
>>> one of the error messages that appear during CMake project configuration.
>>>
>>> Many thanks.
>>>
>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> Master branch from git://itk.org/ITK.git
>>>>
>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>
>>>>> Which ITK version did you use?
>>>>>
>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>
>>>>>> This configuration compiles fine in debug too.
>>>>>>
>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <dzenanz at gmail.com>
>>>>>> wrote:
>>>>>>
>>>>>>> Hi T?nde,
>>>>>>>
>>>>>>> checking out *master* branch and CMake configuration went fine. To
>>>>>>> speed up compile time, I disabled building of examples and testing. I also
>>>>>>> enabled ITK_LEGACY_REMOVE. I did not enable Module_ITKVtkGlue.
>>>>>>>
>>>>>>> Opening the solution file in VS2015 was fairly slow - it might have
>>>>>>> something to do with the fact I just installed it. Building in Release x64
>>>>>>> finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>
>>>>>>> Regards,
>>>>>>> D?enan
>>>>>>>
>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>
>>>>>>>> Hi Everyone,
>>>>>>>>
>>>>>>>> I would be interested whether anyone has managed to build the ITK
>>>>>>>> Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>
>>>>>>>> Many thanks.
>>>>>>>> Tunde
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Community mailing list
>>>>>>>> Community at itk.org
>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> --
>>>>> Tunde
>>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> --
>>> Tunde
>>>
>>
>>
>
>
> --
> --
> Tunde
>



-- 
--
Tunde
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From a.tunde.szilagyi at gmail.com  Wed Nov 18 02:32:17 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Wed, 18 Nov 2015 07:32:17 -0000
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAMeM8ybeAARUD13gbwHv-NK17K2SpXNmJ2xYH-6_WbjVVaD3Jg@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
 <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
 <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
 <CAPf2UMSN=ff2_pjKepVyd2V3coi_Fw33YwbSosPH+Fyv6hXPJg@mail.gmail.com>
 <CAMeM8ybeAARUD13gbwHv-NK17K2SpXNmJ2xYH-6_WbjVVaD3Jg@mail.gmail.com>
Message-ID: <CAMeM8yYmvXR3=JRn3XkVS3EGi6HJVhMRD_xGDwYMuZMt6Rkhnw@mail.gmail.com>

I apologize now I have attached the screenshot.

On 18 November 2015 at 08:30, T?nde Szil?gyi <a.tunde.szilagyi at gmail.com>
wrote:

> Thank you, I have made the new selection to VS 14 2015 Win64 generator in
> CMake.
>
> However, the patch that solved the error messages is:
>
> http://review.source.kitware.com/#/c/20272/
>
> and NOT:
>
> http://review.source.kitware.com/#/c/20154/1
>
> I have now no errors during CMake configuration/generation step. The VS 14
> 2015 build is successful with 335 succeeded, 0 failed, 0 updated.
>
> BUT the ~/ITK_bin/bin/Debug/  does not contain the expected
> directories/files. By expected I mean the ones specified in the
> ITK_Tutorial:
>
> ITKCommon
> ITKBasicFilters
> ITKAlgorithms
> ITKNumerics
> ITKFEM
> ITKIO
> ITKStatistics
> ITKMetalIO
> itkpng
> itkzlib
>
> I have attached the CMakeCache.txt and the selection in the configuration
> stage in CMake.
>
> Many thanks in advance.
>
>
> On 18 November 2015 at 04:40, D?enan Zuki? <dzenanz at gmail.com> wrote:
>
>> What I meant is that the choice of generator should include Win64 in its
>> name, as shown in the attached screenshot. CMake executable is Win32, that
>> does not matter. Also, I just built ITK in 32 bit mode without issues, so
>> something else is amiss.
>>
>> Can you attach your CMakeCache.txt?
>>
>> On Tue, Nov 17, 2015 at 8:12 PM, T?nde Szil?gyi <
>> a.tunde.szilagyi at gmail.com> wrote:
>>
>>> I have tried without the patch, but I am receiving the same error
>>> message. My generator is VS 14 2015 (see CMake window on the LHS).
>>>
>>> Now, I have cleaned everything and started with a fresh installation:
>>> - Git Bash
>>> - CMake
>>> - ITK master
>>>
>>> I realized that only Win32 CMake exists on the official website:
>>> https://cmake.org/download/
>>>
>>> Is this what you refer to in your e-mail below? What else would you
>>> recommend?
>>>
>>> Many thanks.
>>>
>>>
>>> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>
>>>> That patch was merged to master, so you don't need to apply it.
>>>>
>>>> I used VS2015 *Win64* as the generator. You seem to be using *Win32*,
>>>> that might make a difference.
>>>>
>>>> I used version 3.3.1, which I installed some time ago. You are using
>>>> release candidate version - I doubt that is the reason.
>>>>
>>>> Can you try a clean clone (git clone git://itk.org/ITK.git), and then
>>>> building into a clean directory?
>>>>
>>>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>
>>>>> During CMake I am getting the attached error message. All the error
>>>>> messages I receive is with reference to exe files starting with
>>>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>>>> this (http://review.source.kitware.com/#/c/20154/1 - Checkout), but
>>>>> this still results in the same error messages as before. I have attached
>>>>> one of the error messages that appear during CMake project configuration.
>>>>>
>>>>> Many thanks.
>>>>>
>>>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>
>>>>>> Master branch from git://itk.org/ITK.git
>>>>>>
>>>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>
>>>>>>> Which ITK version did you use?
>>>>>>>
>>>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> This configuration compiles fine in debug too.
>>>>>>>>
>>>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> Hi T?nde,
>>>>>>>>>
>>>>>>>>> checking out *master* branch and CMake configuration went fine.
>>>>>>>>> To speed up compile time, I disabled building of examples and testing. I
>>>>>>>>> also enabled ITK_LEGACY_REMOVE. I did not enable Module_ITKVtkGlue.
>>>>>>>>>
>>>>>>>>> Opening the solution file in VS2015 was fairly slow - it might
>>>>>>>>> have something to do with the fact I just installed it. Building in Release
>>>>>>>>> x64 finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>>>
>>>>>>>>> Regards,
>>>>>>>>> D?enan
>>>>>>>>>
>>>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>
>>>>>>>>>> Hi Everyone,
>>>>>>>>>>
>>>>>>>>>> I would be interested whether anyone has managed to build the ITK
>>>>>>>>>> Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>>>
>>>>>>>>>> Many thanks.
>>>>>>>>>> Tunde
>>>>>>>>>>
>>>>>>>>>> _______________________________________________
>>>>>>>>>> Community mailing list
>>>>>>>>>> Community at itk.org
>>>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> --
>>>>>>> Tunde
>>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> --
>>>>> Tunde
>>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> --
>>> Tunde
>>>
>>
>>
>
>
> --
> --
> Tunde
>



-- 
--
Tunde
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From a.tunde.szilagyi at gmail.com  Wed Nov 18 12:25:21 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Wed, 18 Nov 2015 17:25:21 -0000
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAPf2UMQ6uAwmqzDNkHiGS7znisbZbFrZY-6cC9L+CU2cjBFZDw@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
 <CAMeM8yZ65FgK_bKbMn0tNK1TkiktK2_pQtAxdrNZxb_ZyUu8GQ@mail.gmail.com>
 <CAPf2UMS0v+b0WE331=9=2BLUW7t9r81SEkU91ORCTmWyiXomBw@mail.gmail.com>
 <CAMeM8ybr2DkOset1PV_Ua2NBf=3PnpFuS0G4X2aXLM53OT+=2w@mail.gmail.com>
 <CAPf2UMQ2a6z4W8c60mmWuxT+4XqMh9L9sC3QsfSpx5qg4Wkh=w@mail.gmail.com>
 <CAMeM8yaoO9LdKUg-PrP4a12yJfdS6zmdyAJzj8rD2kn0R+bnCA@mail.gmail.com>
 <CAPf2UMSN=ff2_pjKepVyd2V3coi_Fw33YwbSosPH+Fyv6hXPJg@mail.gmail.com>
 <CAMeM8ybeAARUD13gbwHv-NK17K2SpXNmJ2xYH-6_WbjVVaD3Jg@mail.gmail.com>
 <CAPf2UMQ6uAwmqzDNkHiGS7znisbZbFrZY-6cC9L+CU2cjBFZDw@mail.gmail.com>
Message-ID: <CAMeM8yax+Z1bsjdw=ic6VHhvkfD4W5cwvBAppyBqmkixuj9xdg@mail.gmail.com>

Hi D?enan,

Many thanks - there was a different patch that needed to be applied. See
the description in the attached document. I summarize things below.

System: Windows 10 64bit OS

In summary:
- re-installed Git [master] + patch that solved the errors
- re-installed CMake
- Configured and Generated Project in CMake (NO errors)
- BUILD-ALL in VS 14 2015 (NO error message)

Result:
- the .../ITK_bin/bin/Debug does not contain the expected folders/files:
ITKCommon, ITKBasicFilters, ITKAlgorithms, ITKNumerics, ITKFEM, ITKIO,
ITKStatistics, ITKMetalIO, itkpng, itkzlib.
- there is no Release folder in .../ITK_bin/bin/

Each and every step is detailed and illustrated in the attached documents:

1. ITK_TOOLKIT_compilation_18112015.pdf (The end of this file contains a
snapshot of the folders mentioned by You above.)
2. CMakeCache.txt
3. VS 14 2015 output: VS_14_2015_OUTPUT_18112015.pdf

I would welcome your insights. Many thanks in advance.

--
Tunde

On 18 November 2015 at 15:45, D?enan Zuki? <dzenanz at gmail.com> wrote:

> Since static libraries are built by default, ~/ITK_bin/bin/Debug/ contains
> only 3 exe files on my machine (and no DLLs). However ~/ITK_bin/lib/Debug/
> should contain a bunch of .lib files. If it is so, you have successfully
> built ITK in debug mode.
>
> Regarding that patch, you should not have to apply it, it should be
> included. What is the latest commit in the commit log of ITK? Mine is this:
>
> Revision: d248d5f52ad66b19346cab3e8336715a3a628980
> Author: Hyun Jae Kang <hyunjae.kang at kitware.com>
> Date: 2015-11-17 08:24:57
> Message:
> Merge topic 'warning-itkResourceProbe'
>
>
> 3d3b908f COMP: Fix data-conversion warning message on itkResourceProbe
> ----
> Modified: Modules/Core/Common/include/itkResourceProbe.h
> Modified: Modules/Core/Common/include/itkResourceProbe.hxx
> Modified: CMakeLists.txt
>
>
> On Wed, Nov 18, 2015 at 2:30 AM, T?nde Szil?gyi <
> a.tunde.szilagyi at gmail.com> wrote:
>
>> Thank you, I have made the new selection to VS 14 2015 Win64 generator in
>> CMake.
>>
>> However, the patch that solved the error messages is:
>>
>> http://review.source.kitware.com/#/c/20272/
>>
>> and NOT:
>>
>> http://review.source.kitware.com/#/c/20154/1
>>
>> I have now no errors during CMake configuration/generation step. The VS
>> 14 2015 build is successful with 335 succeeded, 0 failed, 0 updated.
>>
>> BUT the ~/ITK_bin/bin/Debug/  does not contain the expected
>> directories/files. By expected I mean the ones specified in the
>> ITK_Tutorial:
>>
>> ITKCommon
>> ITKBasicFilters
>> ITKAlgorithms
>> ITKNumerics
>> ITKFEM
>> ITKIO
>> ITKStatistics
>> ITKMetalIO
>> itkpng
>> itkzlib
>>
>> I have attached the CMakeCache.txt and the selection in the configuration
>> stage in CMake.
>>
>> Many thanks in advance.
>>
>>
>> On 18 November 2015 at 04:40, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> What I meant is that the choice of generator should include Win64 in its
>>> name, as shown in the attached screenshot. CMake executable is Win32, that
>>> does not matter. Also, I just built ITK in 32 bit mode without issues, so
>>> something else is amiss.
>>>
>>> Can you attach your CMakeCache.txt?
>>>
>>> On Tue, Nov 17, 2015 at 8:12 PM, T?nde Szil?gyi <
>>> a.tunde.szilagyi at gmail.com> wrote:
>>>
>>>> I have tried without the patch, but I am receiving the same error
>>>> message. My generator is VS 14 2015 (see CMake window on the LHS).
>>>>
>>>> Now, I have cleaned everything and started with a fresh installation:
>>>> - Git Bash
>>>> - CMake
>>>> - ITK master
>>>>
>>>> I realized that only Win32 CMake exists on the official website:
>>>> https://cmake.org/download/
>>>>
>>>> Is this what you refer to in your e-mail below? What else would you
>>>> recommend?
>>>>
>>>> Many thanks.
>>>>
>>>>
>>>> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>
>>>>> That patch was merged to master, so you don't need to apply it.
>>>>>
>>>>> I used VS2015 *Win64* as the generator. You seem to be using *Win32*,
>>>>> that might make a difference.
>>>>>
>>>>> I used version 3.3.1, which I installed some time ago. You are using
>>>>> release candidate version - I doubt that is the reason.
>>>>>
>>>>> Can you try a clean clone (git clone git://itk.org/ITK.git), and then
>>>>> building into a clean directory?
>>>>>
>>>>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>
>>>>>> During CMake I am getting the attached error message. All the error
>>>>>> messages I receive is with reference to exe files starting with
>>>>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>>>>> this (http://review.source.kitware.com/#/c/20154/1 - Checkout), but
>>>>>> this still results in the same error messages as before. I have attached
>>>>>> one of the error messages that appear during CMake project configuration.
>>>>>>
>>>>>> Many thanks.
>>>>>>
>>>>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>>
>>>>>>> Master branch from git://itk.org/ITK.git
>>>>>>>
>>>>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>
>>>>>>>> Which ITK version did you use?
>>>>>>>>
>>>>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> This configuration compiles fine in debug too.
>>>>>>>>>
>>>>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>>> Hi T?nde,
>>>>>>>>>>
>>>>>>>>>> checking out *master* branch and CMake configuration went fine.
>>>>>>>>>> To speed up compile time, I disabled building of examples and testing. I
>>>>>>>>>> also enabled ITK_LEGACY_REMOVE. I did not enable Module_ITKVtkGlue.
>>>>>>>>>>
>>>>>>>>>> Opening the solution file in VS2015 was fairly slow - it might
>>>>>>>>>> have something to do with the fact I just installed it. Building in Release
>>>>>>>>>> x64 finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>>>>
>>>>>>>>>> Regards,
>>>>>>>>>> D?enan
>>>>>>>>>>
>>>>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>
>>>>>>>>>>> Hi Everyone,
>>>>>>>>>>>
>>>>>>>>>>> I would be interested whether anyone has managed to build the
>>>>>>>>>>> ITK Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>>>>
>>>>>>>>>>> Many thanks.
>>>>>>>>>>> Tunde
>>>>>>>>>>>
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> Community mailing list
>>>>>>>>>>> Community at itk.org
>>>>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> --
>>>>>>>> Tunde
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> --
>>>>>> Tunde
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> --
>>>> Tunde
>>>>
>>>
>>>
>>
>>
>> --
>> --
>> Tunde
>>
>
>


-- 
--
Tunde
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# This is the CMakeCache file.
# For build in directory: c:/Users/Tunde Szilagyi/ITK_bin
# It was generated by CMake: C:/Program Files (x86)/CMake/bin/cmake.exe
# You can edit this file to change values found and used by cmake.
# If you do not want to change any of the values, simply exit the editor.
# If you do want to change a value, simply edit, save, and exit the editor.
# The syntax for the file is as follows:
# KEY:TYPE=VALUE
# KEY is the name of a variable in the cache.
# TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!.
# VALUE is the current value for the KEY.

########################
# EXTERNAL cache entries
########################

//Build the documentation (Doxygen).
BUILD_DOCUMENTATION:BOOL=OFF

//Build the Examples directory.
BUILD_EXAMPLES:BOOL=OFF

//Build Shared Libraries
BUILD_SHARED_LIBS:BOOL=OFF

//Build the testing tree.
BUILD_TESTING:BOOL=ON

//Path to a program.
BZRCOMMAND:FILEPATH=BZRCOMMAND-NOTFOUND

//Semicolon separated list of supported configuration types, only
// supports Debug, Release, MinSizeRel, and RelWithDebInfo, anything
// else will be ignored.
CMAKE_CONFIGURATION_TYPES:STRING=Debug;Release;MinSizeRel;RelWithDebInfo

//Flags used by the compiler during all build types.
CMAKE_CXX_FLAGS:STRING= /DWIN32 /D_WINDOWS /W3 /GR /EHsc

//Flags used by the compiler during debug builds.
CMAKE_CXX_FLAGS_DEBUG:STRING=/D_DEBUG /MDd /Zi /Ob0 /Od /RTC1

//Flags used by the compiler during release builds for minimum
// size.
CMAKE_CXX_FLAGS_MINSIZEREL:STRING=/MD /O1 /Ob1 /D NDEBUG

//Flags used by the compiler during release builds.
CMAKE_CXX_FLAGS_RELEASE:STRING=/MD /O2 /Ob2 /D NDEBUG

//Flags used by the compiler during release builds with debug info.
CMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=/MD /Zi /O2 /Ob1 /D NDEBUG

//Libraries linked by default with all C++ applications.
CMAKE_CXX_STANDARD_LIBRARIES:STRING=kernel32.lib user32.lib gdi32.lib winspool.lib shell32.lib ole32.lib oleaut32.lib uuid.lib comdlg32.lib advapi32.lib

//Flags used by the compiler during all build types.
CMAKE_C_FLAGS:STRING= /DWIN32 /D_WINDOWS /W3

//Flags used by the compiler during debug builds.
CMAKE_C_FLAGS_DEBUG:STRING=/D_DEBUG /MDd /Zi /Ob0 /Od /RTC1

//Flags used by the compiler during release builds for minimum
// size.
CMAKE_C_FLAGS_MINSIZEREL:STRING=/MD /O1 /Ob1 /D NDEBUG

//Flags used by the compiler during release builds.
CMAKE_C_FLAGS_RELEASE:STRING=/MD /O2 /Ob2 /D NDEBUG

//Flags used by the compiler during release builds with debug info.
CMAKE_C_FLAGS_RELWITHDEBINFO:STRING=/MD /Zi /O2 /Ob1 /D NDEBUG

//Libraries linked by default with all C applications.
CMAKE_C_STANDARD_LIBRARIES:STRING=kernel32.lib user32.lib gdi32.lib winspool.lib shell32.lib ole32.lib oleaut32.lib uuid.lib comdlg32.lib advapi32.lib

//Flags used by the linker.
CMAKE_EXE_LINKER_FLAGS:STRING= /machine:x64

//Flags used by the linker during debug builds.
CMAKE_EXE_LINKER_FLAGS_DEBUG:STRING=/debug /INCREMENTAL

//Flags used by the linker during release minsize builds.
CMAKE_EXE_LINKER_FLAGS_MINSIZEREL:STRING=/INCREMENTAL:NO

//Flags used by the linker during release builds.
CMAKE_EXE_LINKER_FLAGS_RELEASE:STRING=/INCREMENTAL:NO

//Flags used by the linker during Release with Debug Info builds.
CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO:STRING=/debug /INCREMENTAL

//Use HP pthreads.
CMAKE_HP_PTHREADS:BOOL=OFF

//Install path prefix, prepended onto install directories.
CMAKE_INSTALL_PREFIX:PATH=C:/Program Files/ITK

//Path to a program.
CMAKE_LINKER:FILEPATH=C:/Program Files (x86)/Microsoft Visual Studio 14.0/VC/bin/x86_amd64/link.exe

//Flags used by the linker during the creation of modules.
CMAKE_MODULE_LINKER_FLAGS:STRING= /machine:x64

//Flags used by the linker during debug builds.
CMAKE_MODULE_LINKER_FLAGS_DEBUG:STRING=/debug /INCREMENTAL

//Flags used by the linker during release minsize builds.
CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL:STRING=/INCREMENTAL:NO

//Flags used by the linker during release builds.
CMAKE_MODULE_LINKER_FLAGS_RELEASE:STRING=/INCREMENTAL:NO

//Flags used by the linker during Release with Debug Info builds.
CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO:STRING=/debug /INCREMENTAL

//Value Computed by CMake
CMAKE_PROJECT_NAME:STATIC=ITK

//RC compiler
CMAKE_RC_COMPILER:FILEPATH=rc

//Flags for Windows Resource Compiler.
CMAKE_RC_FLAGS:STRING=' /DWIN32 '

//Flags used by the linker during the creation of dll's.
CMAKE_SHARED_LINKER_FLAGS:STRING= /machine:x64

//Flags used by the linker during debug builds.
CMAKE_SHARED_LINKER_FLAGS_DEBUG:STRING=/debug /INCREMENTAL

//Flags used by the linker during release minsize builds.
CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL:STRING=/INCREMENTAL:NO

//Flags used by the linker during release builds.
CMAKE_SHARED_LINKER_FLAGS_RELEASE:STRING=/INCREMENTAL:NO

//Flags used by the linker during Release with Debug Info builds.
CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO:STRING=/debug /INCREMENTAL

//If set, runtime paths are not added when installing shared libraries,
// but are added when building.
CMAKE_SKIP_INSTALL_RPATH:BOOL=OFF

//If set, runtime paths are not added when using shared libraries.
CMAKE_SKIP_RPATH:BOOL=OFF

//Flags used by the linker during the creation of static libraries.
CMAKE_STATIC_LINKER_FLAGS:STRING= /machine:x64

//Flags used by the linker during debug builds.
CMAKE_STATIC_LINKER_FLAGS_DEBUG:STRING=

//Flags used by the linker during release minsize builds.
CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL:STRING=

//Flags used by the linker during release builds.
CMAKE_STATIC_LINKER_FLAGS_RELEASE:STRING=

//Flags used by the linker during Release with Debug Info builds.
CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO:STRING=

//Thread library used.
CMAKE_THREAD_LIBS:STRING=

//Use the pthreads library.
CMAKE_USE_PTHREADS:BOOL=OFF

//Use sproc libs.
CMAKE_USE_SPROC:BOOL=OFF

//Use the win32 thread library.
CMAKE_USE_WIN32_THREADS:BOOL=ON

//If this value is on, makefiles will be generated without the
// .SILENT directive, and all commands will be echoed to the console
// during the make.  This is useful for debugging only. With Visual
// Studio IDE projects all commands are done without /nologo.
CMAKE_VERBOSE_MAKEFILE:BOOL=OFF

//X11 extra flags.
CMAKE_X_CFLAGS:STRING=-I

//Libraries and options used in X11 programs.
CMAKE_X_LIBS:STRING=

//Path to the coverage program that CTest uses for performing coverage
// inspection
COVERAGE_COMMAND:FILEPATH=COVERAGE_COMMAND-NOTFOUND

//Extra command line flags to pass to the coverage tool
COVERAGE_EXTRA_FLAGS:STRING=-l

//Enable to build 7-Zip packages
CPACK_BINARY_7Z:BOOL=OFF

//Enable to build IFW packages
CPACK_BINARY_IFW:BOOL=OFF

//Enable to build NSIS packages
CPACK_BINARY_NSIS:BOOL=ON

//Enable to build WiX packages
CPACK_BINARY_WIX:BOOL=OFF

//Enable to build ZIP packages
CPACK_BINARY_ZIP:BOOL=OFF

//Enable to build 7-Zip source packages
CPACK_SOURCE_7Z:BOOL=ON

//Enable to build ZIP source packages
CPACK_SOURCE_ZIP:BOOL=ON

//Path to a program.
CPPCHECK_EXECUTABLE:FILEPATH=CPPCHECK_EXECUTABLE-NOTFOUND

//Path to search for cppcheck
CPPCHECK_ROOT_DIR:PATH=

//How many times to retry timed-out CTest submissions.
CTEST_SUBMIT_RETRY_COUNT:STRING=3

//How long to wait between timed-out CTest submissions.
CTEST_SUBMIT_RETRY_DELAY:STRING=5

//Path to a program.
CVSCOMMAND:FILEPATH=CVSCOMMAND-NOTFOUND

//Options passed to the cvs update command.
CVS_UPDATE_OPTIONS:STRING=-d -A -P

//Test CXX_HAS_WARNING-Wformat=2
CXX_HAS_WARNING-Wformat:UNINITIALIZED=2:INTERNAL=

//Path to a file.
CYGWIN_INSTALL_PATH:PATH=C:/cygwin64

//Test C_HAS_WARNING-Wformat=2
C_HAS_WARNING-Wformat:UNINITIALIZED=2:INTERNAL=

//Maximum time allowed before CTest will kill the test.
DART_TESTING_TIMEOUT:STRING=1500

//Semicolon-separated list of local directories holding data objects
// in the layout %(algo)/%(hash).
ExternalData_OBJECT_STORES:STRING=

//Additional URL templates for the ExternalData CMake script to
// look for testing data. E.g.
//\nfile:///var/bigharddrive/%(algo)/%(hash)
ExternalData_URL_TEMPLATES:STRING=

//Value Computed by CMake
FilteringExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/Filtering

//Value Computed by CMake
FilteringExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/Filtering

//Value Computed by CMake
GDCMCHARLS_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmcharls

//Value Computed by CMake
GDCMCHARLS_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmcharls

//Value Computed by CMake
GDCMJPEG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmjpeg

//Value Computed by CMake
GDCMJPEG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmjpeg

//Value Computed by CMake
GDCMOPENJPEG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg-v2

//Value Computed by CMake
GDCMOPENJPEG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GDCM/src/gdcm/Utilities/gdcmopenjpeg-v2

//Value Computed by CMake
GDCMSOCKETXX_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GDCM/src/gdcm/Utilities/socketxx

//Value Computed by CMake
GDCMSOCKETXX_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GDCM/src/gdcm/Utilities/socketxx

//Value Computed by CMake
GDCM_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GDCM/src/gdcm

//Value Computed by CMake
GDCM_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GDCM/src/gdcm

//Path to a program.
GITCOMMAND:FILEPATH=GITCOMMAND-NOTFOUND

//Value Computed by CMake
HDF5_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/HDF5/src/itkhdf5

//Value Computed by CMake
HDF5_CPP_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/HDF5/src/itkhdf5/c++

//Value Computed by CMake
HDF5_CPP_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/c++

//Value Computed by CMake
HDF5_CPP_SRC_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/HDF5/src/itkhdf5/c++/src

//Value Computed by CMake
HDF5_CPP_SRC_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/c++/src

//Value Computed by CMake
HDF5_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/HDF5/src/itkhdf5

//Value Computed by CMake
HDF5_SRC_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/HDF5/src/itkhdf5/src

//Value Computed by CMake
HDF5_SRC_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src

//Path to a program.
HGCOMMAND:FILEPATH=HGCOMMAND-NOTFOUND

//Value Computed by CMake
IOExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/IO

//Value Computed by CMake
IOExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/IO

//Value Computed by CMake
ITK-Convolution_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Convolution

//Value Computed by CMake
ITK-Convolution_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Convolution

//Value Computed by CMake
ITK-Deconvolution_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Deconvolution

//Value Computed by CMake
ITK-Deconvolution_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Deconvolution

//Value Computed by CMake
ITK3P_EXPAT_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/Expat/src/expat

//Value Computed by CMake
ITK3P_EXPAT_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/Expat/src/expat

//Value Computed by CMake
ITK3P_JPEG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/JPEG/src/itkjpeg

//Value Computed by CMake
ITK3P_JPEG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/JPEG/src/itkjpeg

//Value Computed by CMake
ITK3P_MetaIO_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/MetaIO/src/MetaIO/src

//Value Computed by CMake
ITK3P_MetaIO_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/MetaIO/src/MetaIO/src

//Value Computed by CMake
ITK3P_NrrdIO_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/NrrdIO/src/NrrdIO

//Value Computed by CMake
ITK3P_NrrdIO_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/NrrdIO/src/NrrdIO

//Value Computed by CMake
ITK3P_PNG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/PNG/src/itkpng

//Value Computed by CMake
ITK3P_PNG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/PNG/src/itkpng

//Value Computed by CMake
ITK3P_TIFF_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/TIFF/src/itktiff

//Value Computed by CMake
ITK3P_TIFF_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/TIFF/src/itktiff

//Value Computed by CMake
ITK3P_ZLIB_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/ZLIB/src/itkzlib

//Value Computed by CMake
ITK3P_ZLIB_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/ZLIB/src/itkzlib

//Value Computed by CMake
ITKAnisotropicSmoothing_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/AnisotropicSmoothing

//Value Computed by CMake
ITKAnisotropicSmoothing_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/AnisotropicSmoothing

//Value Computed by CMake
ITKAntiAlias_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/AntiAlias

//Value Computed by CMake
ITKAntiAlias_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/AntiAlias

//Value Computed by CMake
ITKBiasCorrection_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/BiasCorrection

//Dependencies for the target
ITKBiasCorrection_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKPolynomials;general;ITKStatistics;general;ITKOptimizers;

//Value Computed by CMake
ITKBiasCorrection_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/BiasCorrection

//Value Computed by CMake
ITKBinaryMathematicalMorphology_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/BinaryMathematicalMorphology

//Value Computed by CMake
ITKBinaryMathematicalMorphology_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/BinaryMathematicalMorphology

//Value Computed by CMake
ITKBioCell_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/BioCell

//Dependencies for the target
ITKBioCell_LIB_DEPENDS:STATIC=general;ITKMesh;

//Value Computed by CMake
ITKBioCell_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/BioCell

//Value Computed by CMake
ITKClassifiers_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/Classifiers

//Value Computed by CMake
ITKClassifiers_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/Classifiers

//Value Computed by CMake
ITKColormap_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Colormap

//Value Computed by CMake
ITKColormap_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Colormap

//Value Computed by CMake
ITKCommon_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/Common

//Dependencies for the target
ITKCommon_LIB_DEPENDS:STATIC=general;itksys;general;ITKVNLInstantiation;general;itkdouble-conversion;

//Value Computed by CMake
ITKCommon_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/Common

//Value Computed by CMake
ITKConnectedComponents_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/ConnectedComponents

//Value Computed by CMake
ITKConnectedComponents_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/ConnectedComponents

//Value Computed by CMake
ITKCurvatureFlow_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/CurvatureFlow

//Value Computed by CMake
ITKCurvatureFlow_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/CurvatureFlow

//Value Computed by CMake
ITKDICOMParser_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/DICOMParser

//Dependencies for target
ITKDICOMParser_LIB_DEPENDS:STATIC=

//Value Computed by CMake
ITKDICOMParser_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/DICOMParser

//Value Computed by CMake
ITKDeformableMesh_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/DeformableMesh

//Value Computed by CMake
ITKDeformableMesh_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/DeformableMesh

//Value Computed by CMake
ITKDenoising_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Denoising

//Value Computed by CMake
ITKDenoising_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Denoising

//Value Computed by CMake
ITKDiffusionTensorImage_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/DiffusionTensorImage

//Value Computed by CMake
ITKDiffusionTensorImage_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/DiffusionTensorImage

//Value Computed by CMake
ITKDisplacementField_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/DisplacementField

//Value Computed by CMake
ITKDisplacementField_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/DisplacementField

//Value Computed by CMake
ITKDistanceMap_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/DistanceMap

//Value Computed by CMake
ITKDistanceMap_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/DistanceMap

//Value Computed by CMake
ITKDoubleConversion_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/DoubleConversion

//Value Computed by CMake
ITKDoubleConversion_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/DoubleConversion

//Dependencies for target
ITKEXPAT_LIB_DEPENDS:STATIC=

//Value Computed by CMake
ITKEigen_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/Eigen

//Value Computed by CMake
ITKEigen_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/Eigen

//Value Computed by CMake
ITKExpat_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/Expat

//Value Computed by CMake
ITKExpat_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/Expat

//Value Computed by CMake
ITKFEMRegistration_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/FEM

//Value Computed by CMake
ITKFEMRegistration_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/FEM

//Value Computed by CMake
ITKFEM_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/FEM

//Dependencies for the target
ITKFEM_LIB_DEPENDS:STATIC=general;ITKMetaIO;general;ITKCommon;general;ITKStatistics;general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKOptimizers;

//Value Computed by CMake
ITKFEM_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/FEM

//Value Computed by CMake
ITKFFT_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/FFT

//Value Computed by CMake
ITKFFT_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/FFT

//Value Computed by CMake
ITKFastMarching_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/FastMarching

//Value Computed by CMake
ITKFastMarching_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/FastMarching

//Value Computed by CMake
ITKFiniteDifference_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/FiniteDifference

//Value Computed by CMake
ITKFiniteDifference_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/FiniteDifference

//Value Computed by CMake
ITKGDCM_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GDCM

//Value Computed by CMake
ITKGDCM_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GDCM

//Value Computed by CMake
ITKGIFTI_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GIFTI

//Value Computed by CMake
ITKGIFTI_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GIFTI

//Value Computed by CMake
ITKGPUAnisotropicSmoothing_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/GPUAnisotropicSmoothing

//Value Computed by CMake
ITKGPUAnisotropicSmoothing_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/GPUAnisotropicSmoothing

//Value Computed by CMake
ITKGPUCommon_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/GPUCommon

//Value Computed by CMake
ITKGPUCommon_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/GPUCommon

//Value Computed by CMake
ITKGPUFiniteDifference_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/GPUFiniteDifference

//Value Computed by CMake
ITKGPUFiniteDifference_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/GPUFiniteDifference

//Value Computed by CMake
ITKGPUImageFilterBase_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/GPUImageFilterBase

//Value Computed by CMake
ITKGPUImageFilterBase_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/GPUImageFilterBase

//Value Computed by CMake
ITKGPUPDEDeformable_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/GPUPDEDeformable

//Value Computed by CMake
ITKGPUPDEDeformable_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/GPUPDEDeformable

//Value Computed by CMake
ITKGPURegistrationCommon_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/GPUCommon

//Value Computed by CMake
ITKGPURegistrationCommon_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/GPUCommon

//Value Computed by CMake
ITKGPUSmoothing_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/GPUSmoothing

//Value Computed by CMake
ITKGPUSmoothing_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/GPUSmoothing

//Value Computed by CMake
ITKGPUThresholding_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/GPUThresholding

//Value Computed by CMake
ITKGPUThresholding_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/GPUThresholding

//Value Computed by CMake
ITKHDF5_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/HDF5

//Value Computed by CMake
ITKHDF5_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/HDF5

//Value Computed by CMake
ITKIOBMP_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/BMP

//Dependencies for the target
ITKIOBMP_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOBMP_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/BMP

//Value Computed by CMake
ITKIOBioRad_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/BioRad

//Dependencies for the target
ITKIOBioRad_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOBioRad_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/BioRad

//Value Computed by CMake
ITKIOCSV_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/CSV

//Dependencies for the target
ITKIOCSV_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOCSV_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/CSV

//Value Computed by CMake
ITKIOGDCM_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/GDCM

//Dependencies for the target
ITKIOGDCM_LIB_DEPENDS:STATIC=general;gdcmDICT;general;gdcmMSFF;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOGDCM_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/GDCM

//Value Computed by CMake
ITKIOGE_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/GE

//Dependencies for the target
ITKIOGE_LIB_DEPENDS:STATIC=general;ITKIOIPL;

//Value Computed by CMake
ITKIOGE_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/GE

//Value Computed by CMake
ITKIOGIPL_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/GIPL

//Dependencies for the target
ITKIOGIPL_LIB_DEPENDS:STATIC=general;ITKIOImageBase;general;itkzlib;

//Value Computed by CMake
ITKIOGIPL_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/GIPL

//Value Computed by CMake
ITKIOHDF5_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/HDF5

//Dependencies for the target
ITKIOHDF5_LIB_DEPENDS:STATIC=general;itkhdf5_cpp;general;itkhdf5;general;ITKIOImageBase;general;itkhdf5_cpp;general;itkhdf5;

//Value Computed by CMake
ITKIOHDF5_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/HDF5

//Value Computed by CMake
ITKIOIPL_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/IPL

//Dependencies for the target
ITKIOIPL_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOIPL_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/IPL

//Value Computed by CMake
ITKIOImageBase_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/ImageBase

//Dependencies for the target
ITKIOImageBase_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKIOImageBase_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/ImageBase

//Value Computed by CMake
ITKIOJPEG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/JPEG

//Dependencies for the target
ITKIOJPEG_LIB_DEPENDS:STATIC=general;itkjpeg;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOJPEG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/JPEG

//Value Computed by CMake
ITKIOLSM_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/LSM

//Dependencies for the target
ITKIOLSM_LIB_DEPENDS:STATIC=general;ITKIOTIFF;

//Value Computed by CMake
ITKIOLSM_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/LSM

//Value Computed by CMake
ITKIOMRC_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/MRC

//Dependencies for the target
ITKIOMRC_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOMRC_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/MRC

//Value Computed by CMake
ITKIOMesh_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/Mesh

//Dependencies for the target
ITKIOMesh_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKgiftiio;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOMesh_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/Mesh

//Value Computed by CMake
ITKIOMeta_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/Meta

//Dependencies for the target
ITKIOMeta_LIB_DEPENDS:STATIC=general;ITKMetaIO;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOMeta_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/Meta

//Dependencies for the target
ITKIONIFTI-TestSupport_LIB_DEPENDS:STATIC=general;ITKIONIFTI;

//Value Computed by CMake
ITKIONIFTI_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/NIFTI

//Dependencies for the target
ITKIONIFTI_LIB_DEPENDS:STATIC=general;ITKznz;general;ITKniftiio;general;ITKIOImageBase;

//Value Computed by CMake
ITKIONIFTI_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/NIFTI

//Value Computed by CMake
ITKIONRRD_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/NRRD

//Dependencies for the target
ITKIONRRD_LIB_DEPENDS:STATIC=general;ITKNrrdIO;general;ITKIOImageBase;

//Value Computed by CMake
ITKIONRRD_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/NRRD

//Value Computed by CMake
ITKIOPNG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/PNG

//Dependencies for the target
ITKIOPNG_LIB_DEPENDS:STATIC=general;itkpng;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOPNG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/PNG

//Value Computed by CMake
ITKIORAW_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/RAW

//Value Computed by CMake
ITKIORAW_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/RAW

//Value Computed by CMake
ITKIOSiemens_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/Siemens

//Dependencies for the target
ITKIOSiemens_LIB_DEPENDS:STATIC=general;ITKIOIPL;general;ITKIOGE;

//Value Computed by CMake
ITKIOSiemens_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/Siemens

//Value Computed by CMake
ITKIOSpatialObjects_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/SpatialObjects

//Dependencies for the target
ITKIOSpatialObjects_LIB_DEPENDS:STATIC=general;ITKSpatialObjects;general;ITKIOXML;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOSpatialObjects_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/SpatialObjects

//Value Computed by CMake
ITKIOStimulate_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/Stimulate

//Dependencies for the target
ITKIOStimulate_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOStimulate_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/Stimulate

//Value Computed by CMake
ITKIOTIFF_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/TIFF

//Dependencies for the target
ITKIOTIFF_LIB_DEPENDS:STATIC=general;itktiff;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOTIFF_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/TIFF

//Value Computed by CMake
ITKIOTransformBase_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/TransformBase

//Dependencies for the target
ITKIOTransformBase_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKIOTransformBase_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/TransformBase

//Value Computed by CMake
ITKIOTransformHDF5_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/TransformHDF5

//Dependencies for the target
ITKIOTransformHDF5_LIB_DEPENDS:STATIC=general;ITKIOTransformBase;general;itkhdf5_cpp;general;itkhdf5;

//Value Computed by CMake
ITKIOTransformHDF5_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/TransformHDF5

//Value Computed by CMake
ITKIOTransformInsightLegacy_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/TransformInsightLegacy

//Dependencies for the target
ITKIOTransformInsightLegacy_LIB_DEPENDS:STATIC=general;ITKIOTransformBase;general;itkdouble-conversion;

//Value Computed by CMake
ITKIOTransformInsightLegacy_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/TransformInsightLegacy

//Value Computed by CMake
ITKIOTransformMatlab_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/TransformMatlab

//Dependencies for the target
ITKIOTransformMatlab_LIB_DEPENDS:STATIC=general;ITKIOTransformBase;

//Value Computed by CMake
ITKIOTransformMatlab_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/TransformMatlab

//Value Computed by CMake
ITKIOVTK_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/VTK

//Dependencies for the target
ITKIOVTK_LIB_DEPENDS:STATIC=general;ITKIOImageBase;

//Value Computed by CMake
ITKIOVTK_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/VTK

//Value Computed by CMake
ITKIOXML_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/IO/XML

//Dependencies for the target
ITKIOXML_LIB_DEPENDS:STATIC=general;ITKEXPAT;general;ITKIOImageBase;

//Value Computed by CMake
ITKIOXML_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/IO/XML

//Value Computed by CMake
ITKImageAdaptors_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/ImageAdaptors

//Value Computed by CMake
ITKImageAdaptors_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/ImageAdaptors

//Value Computed by CMake
ITKImageCompare_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageCompare

//Value Computed by CMake
ITKImageCompare_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageCompare

//Value Computed by CMake
ITKImageCompose_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageCompose

//Value Computed by CMake
ITKImageCompose_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageCompose

//Value Computed by CMake
ITKImageFeature_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageFeature

//Value Computed by CMake
ITKImageFeature_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageFeature

//Value Computed by CMake
ITKImageFilterBase_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageFilterBase

//Value Computed by CMake
ITKImageFilterBase_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageFilterBase

//Value Computed by CMake
ITKImageFunction_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/ImageFunction

//Value Computed by CMake
ITKImageFunction_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/ImageFunction

//Value Computed by CMake
ITKImageFusion_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageFusion

//Value Computed by CMake
ITKImageFusion_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageFusion

//Value Computed by CMake
ITKImageGradient_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageGradient

//Value Computed by CMake
ITKImageGradient_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageGradient

//Value Computed by CMake
ITKImageGrid_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageGrid

//Value Computed by CMake
ITKImageGrid_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageGrid

//Value Computed by CMake
ITKImageIntensity_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageIntensity

//Value Computed by CMake
ITKImageIntensity_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageIntensity

//Value Computed by CMake
ITKImageLabel_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageLabel

//Value Computed by CMake
ITKImageLabel_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageLabel

//Value Computed by CMake
ITKImageNoise_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageNoise

//Value Computed by CMake
ITKImageNoise_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageNoise

//Value Computed by CMake
ITKImageSources_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageSources

//Value Computed by CMake
ITKImageSources_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageSources

//Value Computed by CMake
ITKImageStatistics_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/ImageStatistics

//Value Computed by CMake
ITKImageStatistics_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/ImageStatistics

//Value Computed by CMake
ITKIntegratedTest_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Nonunit/IntegratedTest

//Value Computed by CMake
ITKIntegratedTest_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Nonunit/IntegratedTest

//Value Computed by CMake
ITKJPEG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/JPEG

//Value Computed by CMake
ITKJPEG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/JPEG

//Value Computed by CMake
ITKKLMRegionGrowing_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/KLMRegionGrowing

//Dependencies for the target
ITKKLMRegionGrowing_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKKLMRegionGrowing_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/KLMRegionGrowing

//Value Computed by CMake
ITKKWSys_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/KWSys

//Value Computed by CMake
ITKKWSys_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/KWSys

//Value Computed by CMake
ITKLabelMap_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/LabelMap

//Dependencies for the target
ITKLabelMap_LIB_DEPENDS:STATIC=general;ITKStatistics;

//Value Computed by CMake
ITKLabelMap_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/LabelMap

//Value Computed by CMake
ITKLabelVoting_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/LabelVoting

//Value Computed by CMake
ITKLabelVoting_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/LabelVoting

//Value Computed by CMake
ITKLevelSets_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/LevelSets

//Value Computed by CMake
ITKLevelSets_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/LevelSets

//Value Computed by CMake
ITKLevelSetsv4_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/LevelSetsv4

//Value Computed by CMake
ITKLevelSetsv4_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/LevelSetsv4

//Value Computed by CMake
ITKMarkovRandomFieldsClassifiers_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/MarkovRandomFieldsClassifiers

//Value Computed by CMake
ITKMarkovRandomFieldsClassifiers_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/MarkovRandomFieldsClassifiers

//Value Computed by CMake
ITKMathematicalMorphology_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/MathematicalMorphology

//Value Computed by CMake
ITKMathematicalMorphology_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/MathematicalMorphology

//Value Computed by CMake
ITKMesh_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/Mesh

//Dependencies for the target
ITKMesh_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKMesh_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/Mesh

//Value Computed by CMake
ITKMetaIO_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/MetaIO

//Dependencies for the target
ITKMetaIO_LIB_DEPENDS:STATIC=general;itkzlib;general;comctl32;general;wsock32;

//Value Computed by CMake
ITKMetaIO_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/MetaIO

//Value Computed by CMake
ITKMetricsv4_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/Metricsv4

//Value Computed by CMake
ITKMetricsv4_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/Metricsv4

//Value Computed by CMake
ITKNIFTI_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/NIFTI

//Value Computed by CMake
ITKNIFTI_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/NIFTI

//Value Computed by CMake
ITKNarrowBand_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/NarrowBand

//Value Computed by CMake
ITKNarrowBand_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/NarrowBand

//Value Computed by CMake
ITKNetlib_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/Netlib

//Value Computed by CMake
ITKNetlib_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/Netlib

//Value Computed by CMake
ITKNeuralNetworks_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/NeuralNetworks

//Value Computed by CMake
ITKNeuralNetworks_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/NeuralNetworks

//Value Computed by CMake
ITKNrrdIO_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/NrrdIO

//Dependencies for the target
ITKNrrdIO_LIB_DEPENDS:STATIC=general;itkzlib;

//Value Computed by CMake
ITKNrrdIO_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/NrrdIO

//Value Computed by CMake
ITKOptimizers_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/Optimizers

//Dependencies for the target
ITKOptimizers_LIB_DEPENDS:STATIC=general;ITKStatistics;

//Value Computed by CMake
ITKOptimizers_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/Optimizers

//Value Computed by CMake
ITKOptimizersv4_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/Optimizersv4

//Dependencies for the target
ITKOptimizersv4_LIB_DEPENDS:STATIC=general;ITKOptimizers;

//Value Computed by CMake
ITKOptimizersv4_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/Optimizersv4

//Value Computed by CMake
ITKPDEDeformableRegistration_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/PDEDeformable

//Value Computed by CMake
ITKPDEDeformableRegistration_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/PDEDeformable

//Value Computed by CMake
ITKPNG_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/PNG

//Value Computed by CMake
ITKPNG_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/PNG

//Value Computed by CMake
ITKPath_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Path

//Dependencies for the target
ITKPath_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKPath_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Path

//Value Computed by CMake
ITKPolynomials_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/Polynomials

//Dependencies for the target
ITKPolynomials_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKPolynomials_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/Polynomials

//Value Computed by CMake
ITKQuadEdgeMeshFiltering_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/QuadEdgeMeshFiltering

//Value Computed by CMake
ITKQuadEdgeMeshFiltering_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/QuadEdgeMeshFiltering

//Value Computed by CMake
ITKQuadEdgeMesh_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/QuadEdgeMesh

//Dependencies for the target
ITKQuadEdgeMesh_LIB_DEPENDS:STATIC=general;ITKMesh;

//Value Computed by CMake
ITKQuadEdgeMesh_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/QuadEdgeMesh

//Value Computed by CMake
ITKRegionGrowing_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/RegionGrowing

//Value Computed by CMake
ITKRegionGrowing_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/RegionGrowing

//Value Computed by CMake
ITKRegistrationCommon_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/Common

//Value Computed by CMake
ITKRegistrationCommon_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/Common

//Value Computed by CMake
ITKRegistrationMethodsv4_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Registration/RegistrationMethodsv4

//Value Computed by CMake
ITKRegistrationMethodsv4_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Registration/RegistrationMethodsv4

//Value Computed by CMake
ITKSignedDistanceFunction_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/SignedDistanceFunction

//Value Computed by CMake
ITKSignedDistanceFunction_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/SignedDistanceFunction

//Value Computed by CMake
ITKSmoothing_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Smoothing

//Value Computed by CMake
ITKSmoothing_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Smoothing

//Value Computed by CMake
ITKSpatialFunction_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/SpatialFunction

//Value Computed by CMake
ITKSpatialFunction_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/SpatialFunction

//Value Computed by CMake
ITKSpatialObjects_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/SpatialObjects

//Dependencies for the target
ITKSpatialObjects_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;general;ITKMesh;general;ITKIOImageBase;

//Value Computed by CMake
ITKSpatialObjects_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/SpatialObjects

//Value Computed by CMake
ITKStatistics_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Numerics/Statistics

//Dependencies for the target
ITKStatistics_LIB_DEPENDS:STATIC=general;ITKCommon;general;itkNetlibSlatec;

//Value Computed by CMake
ITKStatistics_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Numerics/Statistics

//Value Computed by CMake
ITKTIFF_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/TIFF

//Value Computed by CMake
ITKTIFF_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/TIFF

//Value Computed by CMake
ITKTestKernel_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/TestKernel

//Value Computed by CMake
ITKTestKernel_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/TestKernel

//Value Computed by CMake
ITKThresholding_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Filtering/Thresholding

//Value Computed by CMake
ITKThresholding_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Filtering/Thresholding

//Value Computed by CMake
ITKTransform_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Core/Transform

//Value Computed by CMake
ITKTransform_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Core/Transform

//Enable compatibility with ITK3.x when possible.
ITKV3_COMPATIBILITY:BOOL=OFF

//Value Computed by CMake
ITKVNLInstantiation_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNLInstantiation

//Dependencies for the target
ITKVNLInstantiation_LIB_DEPENDS:STATIC=general;itkvnl_algo;general;itkvnl;general;itkv3p_netlib;

//Value Computed by CMake
ITKVNLInstantiation_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNLInstantiation

//Value Computed by CMake
ITKVNL_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL

//Value Computed by CMake
ITKVNL_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL

//Value Computed by CMake
ITKVTK_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Bridge/VTK

//Dependencies for the target
ITKVTK_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKVTK_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Bridge/VTK

//Value Computed by CMake
ITKVideoCore_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Video/Core

//Dependencies for the target
ITKVideoCore_LIB_DEPENDS:STATIC=general;ITKCommon;

//Value Computed by CMake
ITKVideoCore_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Video/Core

//Value Computed by CMake
ITKVideoFiltering_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Video/Filtering

//Value Computed by CMake
ITKVideoFiltering_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Video/Filtering

//Value Computed by CMake
ITKVideoIO_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Video/IO

//Dependencies for the target
ITKVideoIO_LIB_DEPENDS:STATIC=general;ITKVideoCore;general;ITKIOImageBase;

//Value Computed by CMake
ITKVideoIO_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Video/IO

//Value Computed by CMake
ITKVoronoi_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/Voronoi

//Value Computed by CMake
ITKVoronoi_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/Voronoi

//Value Computed by CMake
ITKWatersheds_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/Segmentation/Watersheds

//Dependencies for the target
ITKWatersheds_LIB_DEPENDS:STATIC=general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKCommon;general;ITKStatistics;general;ITKSpatialObjects;general;ITKPath;general;ITKCommon;general;ITKStatistics;

//Value Computed by CMake
ITKWatersheds_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/Segmentation/Watersheds

//Value Computed by CMake
ITKZLIB_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/ZLIB

//Value Computed by CMake
ITKZLIB_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/ZLIB

//Value Computed by CMake
ITK_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin

//Build the tests of module dependencies.
ITK_BUILD_ALL_MODULES_FOR_TESTS:BOOL=OFF

//Build the default ITK modules.
ITK_BUILD_DEFAULT_MODULES:BOOL=ON

//Provide here the size of your RAM Memory in GigaBytes
ITK_COMPUTER_MEMORY_SIZE:STRING=1

//Run cppcheck for static code analysis
ITK_CPPCHECK_TEST:BOOL=OFF

//Doxygen will generate Microsoft HTML help
ITK_DOXYGEN_CHM:BOOL=OFF

//Doxygen will generate additional index files for Xcode 3
ITK_DOXYGEN_DOCSET:BOOL=OFF

//Doxygen will generate Eclipse help plugin
ITK_DOXYGEN_ECLIPSEHELP:BOOL=OFF

//Doxygen will generate HTML Output
ITK_DOXYGEN_HTML:BOOL=ON

//Doxygen will generate LaTeX output
ITK_DOXYGEN_LATEX:BOOL=OFF

//Doxygen will generate Qt Compressed Help
ITK_DOXYGEN_QHP:BOOL=OFF

//Doxygen will generate RTF output optimized for Word 97
ITK_DOXYGEN_RTF:BOOL=OFF

//Doxygen will generate XML output
ITK_DOXYGEN_XML:BOOL=OFF

//Support run-time loading of shared libraries
ITK_DYNAMIC_LOADING:BOOL=ON

//Do not download source code or data from the network
ITK_FORBID_DOWNLOADS:BOOL=OFF

//Remove all legacy code completely.
ITK_LEGACY_REMOVE:BOOL=OFF

//Silence all legacy code messages.
ITK_LEGACY_SILENT:BOOL=OFF

//Value Computed by CMake
ITK_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK

//When ON, ITK will use 64 bits integers to index pixels. This
// is needed for managing images larger than 4Gb in some platforms.
ITK_USE_64BITS_IDS:BOOL=OFF

//Download and use BrainWeb data for advanced testing
ITK_USE_BRAINWEB_DATA:BOOL=OFF

//Turn on concept checking to give helpful errors at compile time
// if a type cannot be used as a template parameter.
ITK_USE_CONCEPT_CHECKING:BOOL=ON

//Use double precision fftw if found
ITK_USE_FFTWD:BOOL=OFF

//Use single precision fftw if found
ITK_USE_FFTWF:BOOL=OFF

//Use single precision for origin/spacing/directions in itk::Image
ITK_USE_FLOAT_SPACE_PRECISION:BOOL=OFF

//GPU acceleration via OpenCL
ITK_USE_GPU:BOOL=OFF

//Enable the use of KWStyle for checking coding style.
ITK_USE_KWSTYLE:BOOL=OFF

//Turn on Strict concept checking to give more stringent errors
// at compile time if a type cannot be used as a template parameter.
ITK_USE_STRICT_CONCEPT_CHECKING:BOOL=OFF

//Use an outside build of double-conversion
ITK_USE_SYSTEM_DOUBLECONVERSION:BOOL=OFF

//Use system-installed expat
ITK_USE_SYSTEM_EXPAT:BOOL=OFF

//Use an installed version of fftw
ITK_USE_SYSTEM_FFTW:BOOL=OFF

//Use an outside build of GDCM.
ITK_USE_SYSTEM_GDCM:BOOL=OFF

//Use an outside build of HDF5.
ITK_USE_SYSTEM_HDF5:BOOL=OFF

//Use an outside build of JPEG.
ITK_USE_SYSTEM_JPEG:BOOL=OFF

//Use the system's libraries by default.
//\nIf this is not set during the initial configuration, it will
// have no effect.
ITK_USE_SYSTEM_LIBRARIES:BOOL=OFF

//Use system-installed png
ITK_USE_SYSTEM_PNG:BOOL=OFF

//Use system SZIP. If OFF, SZIP is built as an external project.
ITK_USE_SYSTEM_SZIP:BOOL=OFF

//Use system-installed tiff
ITK_USE_SYSTEM_TIFF:BOOL=OFF

//Use an outside build of VXL.
ITK_USE_SYSTEM_VXL:BOOL=OFF

//Use system ZLIB. If OFF, ZLIB is built as an external project.
ITK_USE_SYSTEM_ZLIB:BOOL=OFF

//Build Java support (Currently not supported)
ITK_WRAP_JAVA:BOOL=OFF

//Build Perl support (Currently not supported)
ITK_WRAP_PERL:BOOL=OFF

//Build Python support
ITK_WRAP_PYTHON:BOOL=OFF

//Build Ruby support (Currently not supported)
ITK_WRAP_RUBY:BOOL=OFF

//Build Tcl support (Currently not supported)
ITK_WRAP_TCL:BOOL=OFF

//Dependencies for the target
ITKgiftiio_LIB_DEPENDS:STATIC=general;ITKEXPAT;general;ITKznz;general;ITKniftiio;

//Dependencies for the target
ITKniftiio_LIB_DEPENDS:STATIC=general;ITKznz;

//Value Computed by CMake
ITKv4ImageRegistration_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/RegistrationITKv4

//Value Computed by CMake
ITKv4ImageRegistration_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/RegistrationITKv4

//Dependencies for the target
ITKznz_LIB_DEPENDS:STATIC=general;itkzlib;

//Value Computed by CMake
ImageExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/DataRepresentation/Image

//Value Computed by CMake
ImageExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/DataRepresentation/Image

//Value Computed by CMake
ImageSegmentation_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/Segmentation

//Value Computed by CMake
ImageSegmentation_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/Segmentation

//Value Computed by CMake
IteratorExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/Iterators

//Value Computed by CMake
IteratorExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/Iterators

//Path to the KWStyle executable
KWSTYLE_EXECUTABLE:FILEPATH=KWSTYLE_EXECUTABLE-NOTFOUND

//Command to build the project
MAKECOMMAND:STRING="C:\Program Files (x86)\CMake\bin\cmake.exe" --build . --config "${CTEST_CONFIGURATION_TYPE}"

//The number of headers in a HeaderTest code.
MAXIMUM_NUMBER_OF_HEADERS:STRING=35

//Path to the memory checking command, used for memory error detection.
MEMORYCHECK_COMMAND:FILEPATH=MEMORYCHECK_COMMAND-NOTFOUND

//File that contains suppressions for the memory checker
MEMORYCHECK_SUPPRESSIONS_FILE:FILEPATH=

//Value Computed by CMake
MeshExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/DataRepresentation/Mesh

//Value Computed by CMake
MeshExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/DataRepresentation/Mesh

//AnalyzeObjectMapIO plugin for ITK. From Insight Journal article
// with handle: http://hdl.handle.net/1926/593
Module_AnalyzeObjectMapIO:BOOL=OFF

//This module contains wrapper code to convert ITK Image's to
//\n  NumPy array's and back.  For example:
//\n
//\n    import itk
//\n    ImageType = itk.Image[itk.F, 2]
//\n    image = ImageType.New()
//\n    array = itk.PyBuffer[ImageType].GetArrayFromImage(image)
//\n    image = itk.PyBuffer[ImageType].GetImageFromArray(array)
//\n
//\n  See http://insight-journal.org/browse/publication/85
//\n      http://hdl.handle.net/1926/188
Module_BridgeNumPy:BOOL=OFF

//This module contains a filter to compute higher order
//\n  accurate numerical derivatives and gradients from an input
// scalar image.
//\n  field from a displacement field image.
//\n  Higher Order Accurate Derivative and Gradient Calculation
// in ITK
//\n  http://www.insight-journal.org/browse/publication/775
//\n  http://hdl.handle.net/10380/3231
Module_HigherOrderAccurateGradient:BOOL=OFF

//FDFImageIO plugin for ITK. Authors Gleen Pierce/Nick Tustison/Kent
// Williams
Module_IOFDF:BOOL=OFF

//This module contains classes for reading and writing QuadEdgeMeshes
// using
//\n  the STL (STereoLithography)file format. http://hdl.handle.net/10380/3452
Module_IOSTL:BOOL=OFF

//The modules contains classes for reading spatial transform from
// DICOM
//\n  files. See http://www.insight-journal.org/browse/publication/923
//\n             http://hdl.handle.net/10380/3468
Module_IOTransformDCMTK:BOOL=OFF

//Request building ITKDCMTK
Module_ITKDCMTK:BOOL=OFF

//Request building ITKDeprecated
Module_ITKDeprecated:BOOL=OFF

//Request building ITKIODCMTK
Module_ITKIODCMTK:BOOL=OFF

//Request building ITKIOMINC
Module_ITKIOMINC:BOOL=OFF

//Request building ITKIOPhilipsREC
Module_ITKIOPhilipsREC:BOOL=OFF

//Request building ITKLevelSetsv4Visualization
Module_ITKLevelSetsv4Visualization:BOOL=OFF

//Request building ITKMINC
Module_ITKMINC:BOOL=OFF

//Request building ITKOpenJPEG
Module_ITKOpenJPEG:BOOL=OFF

//Request building ITKReview
Module_ITKReview:BOOL=OFF

//Request building ITKV3Compatibility
Module_ITKV3Compatibility:BOOL=OFF

//Request building ITKVideoBridgeOpenCV
Module_ITKVideoBridgeOpenCV:BOOL=OFF

//Request building ITKVideoBridgeVXL
Module_ITKVideoBridgeVXL:BOOL=OFF

//Request building ITKVtkGlue
Module_ITKVtkGlue:BOOL=OFF

//Classes performing morphology efficiently on label images.
//\n  Label collisions are consistently handled, and
//\n  operations are efficient (approximately constant time wrt
//\n  structuring element size). Only circular/spherical/hyperspherical
//\n  structuring elements are supported.
//\n  http://www.insight-journal.org/browse/publication/228
//\n  http://hdl.handle.net/10380/3399
Module_LabelErodeDilate:BOOL=OFF

//Framework for determining the sizes of lesions in medical images.
Module_LesionSizingToolkit:BOOL=OFF

//MGHIO ImageIO plugin for ITK
Module_MGHIO:BOOL=OFF

//http://www.insight-journal.org/browse/publication/213
//\n
Module_MinimalPathExtraction:BOOL=OFF

//Classes performing morphology using parabolic functions.
//\n  Fast distance transforms and binary erosions/dilations/openings/closings
//\n  by spheres, sharpenings and grayscale operations.
//\n  http://www.insight-journal.org/browse/publication/228
//\n  http://hdl.handle.net/1926/1370
Module_ParabolicMorphology:BOOL=OFF

//SCIFIO (Bioformats) ImageIO plugin for ITK
Module_SCIFIO:BOOL=OFF

//A class to perform automatic skull-stripping for neuroimage analysis.
Module_SkullStrip:BOOL=OFF

//GPU and CPU Young & Van Vliet Recursive Gaussian Smoothing Filter:
// http://hdl.handle.net/10380/3425
Module_SmoothingRecursiveYvvGaussianFilter:BOOL=OFF

//This module builds the examples found at http://itk.org/ITKExamples/
Module_SphinxExamples:BOOL=OFF

//This module contains filter called
//\nitk::SplitComponentsImageFilter.  This filter generates component
// images from an
//\nitk::Image of, for example, itk::Vector, itk::CovariantVector,
// or
//\nitk::SymmetricSecondRankTensor. http://hdl.handle.net/10380/3230
Module_SplitComponents:BOOL=OFF

//Triangle and edge based QuadEdgeMesh subdivision filters.
//\n
//\nSee the following Insight Journal's publication:
//\n
//\n  Wanlin Zhu, "Triangle Mesh Subdivision"
//\n  http://www.insight-journal.org/browse/publication/831
//\n  http://hdl.handle.net/10380/3307
Module_SubdivisionQuadEdgeMeshFilter:BOOL=OFF

//A module to perform variational image registration. http://hdl.handle.net/10380/3460
Module_VariationalRegistration:BOOL=OFF

//A collection of examples that illustrate how to use ITK.
Module_WikiExamples:BOOL=OFF

//Value Computed by CMake
NIFTI_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/NIFTI/src/nifti

//Value Computed by CMake
NIFTI_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/NIFTI/src/nifti

//Value Computed by CMake
NumericsExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/Numerics

//Value Computed by CMake
NumericsExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/Numerics

//Path to a program.
P4COMMAND:FILEPATH=P4COMMAND-NOTFOUND

//Path to a program.
PERL_EXECUTABLE:FILEPATH=PERL_EXECUTABLE-NOTFOUND

//Path to a program.
PYTHON_EXECUTABLE:FILEPATH=PYTHON_EXECUTABLE-NOTFOUND

//Value Computed by CMake
PathExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/DataRepresentation/Path

//Value Computed by CMake
PathExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/DataRepresentation/Path

//Path to scp command, used by CTest for submitting results to
// a Dart server
SCPCOMMAND:FILEPATH=SCPCOMMAND-NOTFOUND

//Name of the computer/site where compile is being run
SITE:STRING=TUNDE_SZILAGYI

//Path to the SLURM sbatch executable
SLURM_SBATCH_COMMAND:FILEPATH=SLURM_SBATCH_COMMAND-NOTFOUND

//Path to the SLURM srun executable
SLURM_SRUN_COMMAND:FILEPATH=SLURM_SRUN_COMMAND-NOTFOUND

//Path to a program.
SVNCOMMAND:FILEPATH=SVNCOMMAND-NOTFOUND

//Value Computed by CMake
SpatialObjectsExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/SpatialObjects

//Value Computed by CMake
SpatialObjectsExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/SpatialObjects

//Value Computed by CMake
StatisticsExamples_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Examples/Statistics

//Value Computed by CMake
StatisticsExamples_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Examples/Statistics

//Enable C++0x standard extensions
VCL_INCLUDE_CXX_0X:BOOL=OFF

//Whether vnl_vector/vnl_matrix accessor methods check index bounds.
VNL_CONFIG_CHECK_BOUNDS:BOOL=ON

//Enable Streaming SIMD Extensions 2 optimisations (hardware dependant).
// Currently broken. For use by VNL developers only.
VNL_CONFIG_ENABLE_SSE2:BOOL=OFF

//Enable Streaming SIMD Extensions 2 implementation of rounding
// (hardware dependant).
VNL_CONFIG_ENABLE_SSE2_ROUNDING:BOOL=ON

//Whether backward-compatibility methods are provided by vnl.
VNL_CONFIG_LEGACY_METHODS:BOOL=OFF

//Whether thread-safe vnl implementations are used.
VNL_CONFIG_THREAD_SAFE:BOOL=ON

//v3p include files
VTHREEP_INCLUDE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/v3p

//v3p include files
VTHREEP_INSTALL_INCLUDE_DIR:STATIC=C:/Program Files/ITK/include/vxl/v3p

//Re-run the configuration tests?
VXL_UPDATE_CONFIGURATION:BOOL=OFF

//Dependencies for the target
gdcmCommon_LIB_DEPENDS:STATIC=general;ws2_32;general;crypt32;

//Dependencies for the target
gdcmDICT_LIB_DEPENDS:STATIC=general;gdcmDSED;general;gdcmIOD;

//Dependencies for the target
gdcmDSED_LIB_DEPENDS:STATIC=general;gdcmCommon;general;itkzlib;

//Dependencies for the target
gdcmIOD_LIB_DEPENDS:STATIC=general;gdcmDSED;general;gdcmCommon;general;ITKEXPAT;

//Dependencies for the target
gdcmMEXD_LIB_DEPENDS:STATIC=general;gdcmMSFF;general;gdcmDICT;general;gdcmDSED;general;gdcmIOD;general;gdcmsocketxx;general;ws2_32;

//Dependencies for the target
gdcmMSFF_LIB_DEPENDS:STATIC=general;gdcmIOD;general;gdcmDSED;general;gdcmDICT;general;gdcmjpeg8;general;gdcmjpeg12;general;gdcmjpeg16;general;gdcmopenjpeg;general;gdcmcharls;general;rpcrt4;

//Dependencies for target
gdcmcharls_LIB_DEPENDS:STATIC=

//Dependencies for target
gdcmjpeg12_LIB_DEPENDS:STATIC=

//Dependencies for target
gdcmjpeg16_LIB_DEPENDS:STATIC=

//Dependencies for target
gdcmjpeg8_LIB_DEPENDS:STATIC=

//Dependencies for target
gdcmopenjpeg_LIB_DEPENDS:STATIC=

//Dependencies for the target
gdcmsocketxx_LIB_DEPENDS:STATIC=general;ws2_32.lib;

//Value Computed by CMake
gifticlib_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/GIFTI/src/gifticlib

//Value Computed by CMake
gifticlib_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/GIFTI/src/gifticlib

//Dependencies for the target
itkNetlibSlatec_LIB_DEPENDS:STATIC=general;itkv3p_netlib;

//Value Computed by CMake
itkdicomparser_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/DICOMParser/src/DICOMParser

//Value Computed by CMake
itkdicomparser_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/DICOMParser/src/DICOMParser

//Dependencies for target
itkdouble-conversion_LIB_DEPENDS:STATIC=

//Dependencies for the target
itkhdf5_LIB_DEPENDS:STATIC=general;kernel32;general;ws2_32;general;wsock32;general;itkzlib;

//Dependencies for the target
itkhdf5_cpp_LIB_DEPENDS:STATIC=general;itkhdf5;

//Dependencies for target
itkjpeg_LIB_DEPENDS:STATIC=

//Dependencies for the target
itkpng_LIB_DEPENDS:STATIC=general;itkzlib;

//Value Computed by CMake
itksys_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/KWSys/src/KWSys

//Dependencies for the target
itksys_LIB_DEPENDS:STATIC=general;ws2_32;general;Psapi;

//Value Computed by CMake
itksys_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/KWSys/src/KWSys

//Dependencies for the target
itktestlib_LIB_DEPENDS:STATIC=general;itkvcl;

//Dependencies for the target
itktiff_LIB_DEPENDS:STATIC=general;itkzlib;general;itkjpeg;

//Dependencies for target
itkv3p_lsqr_LIB_DEPENDS:STATIC=

//Dependencies for target
itkv3p_netlib_LIB_DEPENDS:STATIC=

//Dependencies for target
itkvcl_LIB_DEPENDS:STATIC=

//Dependencies for the target
itkvnl_LIB_DEPENDS:STATIC=general;itkvcl;

//Dependencies for the target
itkvnl_algo_LIB_DEPENDS:STATIC=general;itkv3p_netlib;general;itkvnl;general;itkv3p_lsqr;

//Dependencies for target
itkzlib_LIB_DEPENDS:STATIC=

//Value Computed by CMake
lsqr_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/v3p/netlib/linalg

//Value Computed by CMake
lsqr_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/v3p/netlib/linalg

//Value Computed by CMake
netlib_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/v3p/netlib

//Value Computed by CMake
netlib_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/v3p/netlib

//Value Computed by CMake
vcl_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/vcl

//Value Computed by CMake
vcl_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/vcl

//Value Computed by CMake
vnl_algo_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/core/vnl/algo

//Value Computed by CMake
vnl_algo_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/core/vnl/algo

//Value Computed by CMake
vthreep_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/v3p

//Value Computed by CMake
vthreep_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/v3p

//Value Computed by CMake
vxl_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl

//Value Computed by CMake
vxl_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl

//Value Computed by CMake
vxl_config_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/config/cmake/config

//Value Computed by CMake
vxl_config_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/config/cmake/config

//Value Computed by CMake
vxlcore_BINARY_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK_bin/Modules/ThirdParty/VNL/src/vxl/core

//Value Computed by CMake
vxlcore_SOURCE_DIR:STATIC=C:/Users/Tunde Szilagyi/ITK/Modules/ThirdParty/VNL/src/vxl/core


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# INTERNAL cache entries
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//checking IF converting from long double to integers is accurate
H5_LDOUBLE_TO_INTEGER_ACCURATE:INTERNAL=1
//Checking IF converting from long double to integers works
H5_LDOUBLE_TO_INTEGER_WORKS:INTERNAL=1
//Result of TRY_COMPILE
H5_LDOUBLE_TO_INTEGER_WORKS_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LDOUBLE_TO_INTEGER_WORKS_RUN:INTERNAL=0
//Checking IF correctly converting long double to (unsigned) long
// long values
H5_LDOUBLE_TO_LLONG_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
H5_LDOUBLE_TO_LLONG_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LDOUBLE_TO_LLONG_ACCURATE_RUN:INTERNAL=0
//Checking IF correctly converting long double to unsigned int
// values
H5_LDOUBLE_TO_UINT_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
H5_LDOUBLE_TO_UINT_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LDOUBLE_TO_UINT_ACCURATE_RUN:INTERNAL=0
//Checking IF compiling long long to floating-point typecasts work
H5_LLONG_TO_FP_CAST_WORKS:INTERNAL=1
//Checking IF correctly converting (unsigned) long long to long
// double values
H5_LLONG_TO_LDOUBLE_CORRECT:INTERNAL=1
//Result of TRY_COMPILE
H5_LLONG_TO_LDOUBLE_CORRECT_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_LLONG_TO_LDOUBLE_CORRECT_RUN:INTERNAL=0
//Checking IF alignment restrictions are strictly enforced
H5_NO_ALIGNMENT_RESTRICTIONS:INTERNAL=1
//Result of TRY_COMPILE
H5_NO_ALIGNMENT_RESTRICTIONS_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_NO_ALIGNMENT_RESTRICTIONS_RUN:INTERNAL=0
//Width for printf for type `long long' or `__int64', us. `ll
H5_PRINTF_LL_WIDTH:INTERNAL="I64"
//CHECK_TYPE_SIZE: sizeof(char)
H5_SIZEOF_CHAR:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(double)
H5_SIZEOF_DOUBLE:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(float)
H5_SIZEOF_FLOAT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int)
H5_SIZEOF_INT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int16_t)
H5_SIZEOF_INT16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(int32_t)
H5_SIZEOF_INT32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int64_t)
H5_SIZEOF_INT64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(int8_t)
H5_SIZEOF_INT8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int_fast16_t)
H5_SIZEOF_INT_FAST16_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int_fast32_t)
H5_SIZEOF_INT_FAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int_fast64_t)
H5_SIZEOF_INT_FAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(int_fast8_t)
H5_SIZEOF_INT_FAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int_least16_t)
H5_SIZEOF_INT_LEAST16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(int_least32_t)
H5_SIZEOF_INT_LEAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(int_least64_t)
H5_SIZEOF_INT_LEAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(int_least8_t)
H5_SIZEOF_INT_LEAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(long)
H5_SIZEOF_LONG:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(long double)
H5_SIZEOF_LONG_DOUBLE:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(long long)
H5_SIZEOF_LONG_LONG:INTERNAL=8
//SizeOf for off64_t
H5_SIZEOF_OFF64_T:INTERNAL=0
//CHECK_TYPE_SIZE: sizeof(off_t)
H5_SIZEOF_OFF_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(short)
H5_SIZEOF_SHORT:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(size_t)
H5_SIZEOF_SIZE_T:INTERNAL=8
//SizeOf for ssize_t
H5_SIZEOF_SSIZE_T:INTERNAL=0
//CHECK_TYPE_SIZE: sizeof(uint16_t)
H5_SIZEOF_UINT16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(uint32_t)
H5_SIZEOF_UINT32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint64_t)
H5_SIZEOF_UINT64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(uint8_t)
H5_SIZEOF_UINT8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(uint_fast16_t)
H5_SIZEOF_UINT_FAST16_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint_fast32_t)
H5_SIZEOF_UINT_FAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint_fast64_t)
H5_SIZEOF_UINT_FAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(uint_fast8_t)
H5_SIZEOF_UINT_FAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(uint_least16_t)
H5_SIZEOF_UINT_LEAST16_T:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(uint_least32_t)
H5_SIZEOF_UINT_LEAST32_T:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(uint_least64_t)
H5_SIZEOF_UINT_LEAST64_T:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(uint_least8_t)
H5_SIZEOF_UINT_LEAST8_T:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(unsigned)
H5_SIZEOF_UNSIGNED:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(__int64)
H5_SIZEOF___INT64:INTERNAL=8
//Checking IF compiling unsigned long long to floating-point typecasts
// work
H5_ULLONG_TO_FP_CAST_WORKS:INTERNAL=1
//Checking IF converting unsigned long long to long double with
// precision
H5_ULLONG_TO_LDOUBLE_PRECISION:INTERNAL=
//Result of TRY_COMPILE
H5_ULLONG_TO_LDOUBLE_PRECISION_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_ULLONG_TO_LDOUBLE_PRECISION_RUN:INTERNAL=1
//Checking IF accurately converting unsigned long to float values
H5_ULONG_TO_FLOAT_ACCURATE:INTERNAL=1
//Result of TRY_COMPILE
H5_ULONG_TO_FLOAT_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_ULONG_TO_FLOAT_ACCURATE_RUN:INTERNAL=0
//Checking IF accurately converting unsigned long long to floating-point
// values
H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE:INTERNAL=
//Result of TRY_COMPILE
H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE_RUN:INTERNAL=1
//Have include assert.h
HAVE_ASSERT_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_CHAR:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_DOUBLE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_FLOAT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_UNSIGNED_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_SIZEOF_VOID_P:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_CMAKE_WORDS_BIGENDIAN:INTERNAL=TRUE
//Have includes dlfcn.h
HAVE_DLFCN_H:INTERNAL=
//Have include emmintrin.h
HAVE_EMMINTRIN_H:INTERNAL=1
//Have include fcntl.h
HAVE_FCNTL_H:INTERNAL=1
//Have include fenv.h
HAVE_FENV_H:INTERNAL=1
//Have function floor
HAVE_FLOOR:INTERNAL=1
//Have function getopt
HAVE_GETOPT:INTERNAL=
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_CHAR:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_DOUBLE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_FLOAT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_FAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_INT_LEAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_LONG_DOUBLE:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_LONG_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_OFF64_T:INTERNAL=FALSE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_OFF_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_SIZE_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_SSIZE_T:INTERNAL=FALSE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_FAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST16_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST32_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST64_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UINT_LEAST8_T:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF_UNSIGNED:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_H5_SIZEOF___INT64:INTERNAL=TRUE
//Have includes ieeefp.h
HAVE_IEEEFP_H:INTERNAL=
//Have include inttypes.h
HAVE_INTTYPES_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_IOEO_COMPILED:INTERNAL=TRUE
//Result of TRY_RUN
HAVE_IOEO_EXITCODE:INTERNAL=0
//Have function isascii
HAVE_ISASCII:INTERNAL=
// 
HAVE_ITK_CPP_FUNCTION:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF_CHAR:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF_LONG_LONG:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF_SHORT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_KWSYS_SIZEOF___INT64:INTERNAL=TRUE
//Have include limits.h
HAVE_LIMITS_H:INTERNAL=1
//Have include malloc.h
HAVE_MALLOC_H:INTERNAL=1
//Have function memmove
HAVE_MEMMOVE:INTERNAL=1
//Have include memory.h
HAVE_MEMORY_H:INTERNAL=1
//Have function memset
HAVE_MEMSET:INTERNAL=1
//Have function mmap
HAVE_MMAP:INTERNAL=
//Have function pow
HAVE_POW:INTERNAL=1
//Result of TRY_COMPILE
HAVE_QNANHIBIT_VALUE:INTERNAL=TRUE
//Have include search.h
HAVE_SEARCH_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_SIZEOF_INT:INTERNAL=TRUE
//Result of TRY_COMPILE
HAVE_SIZEOF_LONG:INTERNAL=TRUE
//Have function sqrt
HAVE_SQRT:INTERNAL=1
//Have include stddef.h
HAVE_STDDEF_H:INTERNAL=1
//Have include stdint.h
HAVE_STDINT_H:INTERNAL=1
//Have include stdlib.h
HAVE_STDLIB_H:INTERNAL=1
//Have function strcasecmp
HAVE_STRCASECMP:INTERNAL=
//Have function strchr
HAVE_STRCHR:INTERNAL=1
//Have includes strings.h
HAVE_STRINGS_H:INTERNAL=
//Have include string.h
HAVE_STRING_H:INTERNAL=1
//Have function strrchr
HAVE_STRRCHR:INTERNAL=1
//Have function strstr
HAVE_STRSTR:INTERNAL=1
//Have function strtol
HAVE_STRTOL:INTERNAL=1
//Have function strtoul
HAVE_STRTOUL:INTERNAL=1
//Have include sys/stat.h
HAVE_SYS_STAT_H:INTERNAL=1
//Have includes sys/time.h
HAVE_SYS_TIME_H:INTERNAL=
//Have include sys/types.h
HAVE_SYS_TYPES_H:INTERNAL=1
//Have include unistd.h
HAVE_UNISTD_H:INTERNAL=
//Result of TRY_COMPILE
HAVE_VXL_BIG_ENDIAN:INTERNAL=TRUE
//Have include windows.h
HAVE_WINDOWS_H:INTERNAL=1
//Result of TRY_COMPILE
HAVE_WORDS_BIGENDIAN:INTERNAL=TRUE
//Allow External Library Building
HDF5_ALLOW_EXTERNAL_SUPPORT:INTERNAL=OFF
//Build HDF5 C++ Library
HDF5_BUILD_CPP_LIB:INTERNAL=ON
//Build HIGH Level HDF5 Library
HDF5_BUILD_HL_LIB:INTERNAL=OFF
//Disable compiler warnings
HDF5_DISABLE_COMPILER_WARNINGS:INTERNAL=OFF
//ADVANCED property for variable: HDF5_ENABLE_CODESTACK
HDF5_ENABLE_CODESTACK-ADVANCED:INTERNAL=1
//Enable the function stack tracing (for developer debugging).
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//Enable code coverage for Libraries and Programs
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//Enable deprecated public API symbols
HDF5_ENABLE_DEPRECATED_SYMBOLS:INTERNAL=ON
//ADVANCED property for variable: HDF5_ENABLE_GPFS
HDF5_ENABLE_GPFS-ADVANCED:INTERNAL=1
//Enable GPFS hints for the MPI/POSIX file driver
HDF5_ENABLE_GPFS:INTERNAL=OFF
//Enable datasets larger than memory
HDF5_ENABLE_HSIZET:INTERNAL=ON
//Enable support for large (64-bit) files on Linux.
HDF5_ENABLE_LARGE_FILE:INTERNAL=ON
//Enable parallel build (requires MPI)
HDF5_ENABLE_PARALLEL:INTERNAL=OFF
//Use SZip Filter
HDF5_ENABLE_SZIP_SUPPORT:INTERNAL=OFF
//Enable Threadsafety
HDF5_ENABLE_THREADSAFE:INTERNAL=OFF
//Enable API tracing capability
HDF5_ENABLE_TRACE:INTERNAL=OFF
//Indicate that a memory checker is used
HDF5_ENABLE_USING_MEMCHECKER:INTERNAL=OFF
//Enable Zlib Filters
HDF5_ENABLE_Z_LIB_SUPPORT:INTERNAL=ON
//ADVANCED property for variable: HDF5_Enable_Clear_File_Buffers
HDF5_Enable_Clear_File_Buffers-ADVANCED:INTERNAL=1
//Securely clear file buffers before writing to file
HDF5_Enable_Clear_File_Buffers:INTERNAL=ON
//ADVANCED property for variable: HDF5_Enable_Instrument
HDF5_Enable_Instrument-ADVANCED:INTERNAL=1
//Instrument The library
HDF5_Enable_Instrument:INTERNAL=OFF
//Used to pass variables between directories
HDF5_LIBRARIES_TO_EXPORT:INTERNAL=itkhdf5;itkhdf5_cpp
//ADVANCED property for variable: HDF5_METADATA_TRACE_FILE
HDF5_METADATA_TRACE_FILE-ADVANCED:INTERNAL=1
//Enable metadata trace file collection
HDF5_METADATA_TRACE_FILE:INTERNAL=OFF
//CPACK - include external libraries
HDF5_PACKAGE_EXTLIBS:INTERNAL=OFF
//Result of TRY_COMPILE
HDF5_PRINTF_LL_TEST_COMPILE:INTERNAL=TRUE
//Result of TRY_RUN
HDF5_PRINTF_LL_TEST_RUN:INTERNAL=0
//ADVANCED property for variable: HDF5_STRICT_FORMAT_CHECKS
HDF5_STRICT_FORMAT_CHECKS-ADVANCED:INTERNAL=1
//Whether to perform strict file format checks
HDF5_STRICT_FORMAT_CHECKS:INTERNAL=OFF
//Use the HDF5 1.6.x API by default
HDF5_USE_16_API_DEFAULT:INTERNAL=OFF
//Use the FLETCHER32 Filter
HDF5_USE_FILTER_FLETCHER32:INTERNAL=ON
//Use the NBIT Filter
HDF5_USE_FILTER_NBIT:INTERNAL=ON
//Use the SCALEOFFSET Filter
HDF5_USE_FILTER_SCALEOFFSET:INTERNAL=ON
//Use the SHUFFLE Filter
HDF5_USE_FILTER_SHUFFLE:INTERNAL=ON
//Use the PACKED BITS feature in h5dump
HDF5_USE_H5DUMP_PACKED_BITS:INTERNAL=ON
//ADVANCED property for variable: HDF5_WANT_DATA_ACCURACY
HDF5_WANT_DATA_ACCURACY-ADVANCED:INTERNAL=1
//IF data accuracy is guaranteed during data conversions
HDF5_WANT_DATA_ACCURACY:INTERNAL=ON
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//exception handling functions is checked during data conversions
HDF5_WANT_DCONV_EXCEPTION:INTERNAL=ON
//Use Legacy Names for Libraries and Programs
HDF_LEGACY_NAMING:INTERNAL=ON
//ADVANCED property for variable: HGCOMMAND
HGCOMMAND-ADVANCED:INTERNAL=1
//Result of TRY_COMPILE
INLINE_TEST___inline:INTERNAL=TRUE
//Result of TRY_COMPILE
INLINE_TEST___inline__:INTERNAL=FALSE
//Result of TRY_COMPILE
INLINE_TEST_inline:INTERNAL=TRUE
//Request building Bridge modules
ITKGroup_Bridge:INTERNAL=OFF
//Request building Compatibility modules
ITKGroup_Compatibility:INTERNAL=OFF
//Request building Core modules
ITKGroup_Core:INTERNAL=ON
//Request building Filtering modules
ITKGroup_Filtering:INTERNAL=OFF
//Request building IO modules
ITKGroup_IO:INTERNAL=OFF
//Request building Nonunit modules
ITKGroup_Nonunit:INTERNAL=OFF
//Request building Numerics modules
ITKGroup_Numerics:INTERNAL=OFF
//Request building Registration modules
ITKGroup_Registration:INTERNAL=OFF
//Request building Remote modules
ITKGroup_Remote:INTERNAL=OFF
//Request building Segmentation modules
ITKGroup_Segmentation:INTERNAL=OFF
//Request building ThirdParty modules
ITKGroup_ThirdParty:INTERNAL=OFF
//Request building Video modules
ITKGroup_Video:INTERNAL=OFF
//ADVANCED property for variable: ITK_BUILD_ALL_MODULES_FOR_TESTS
ITK_BUILD_ALL_MODULES_FOR_TESTS-ADVANCED:INTERNAL=1
//Test ITK_COMPILER_DOES_NOT_NEED_MSSE2_FLAG
ITK_COMPILER_DOES_NOT_NEED_MSSE2_FLAG:INTERNAL=
//Result of TRY_COMPILE
ITK_COMPILER_HAS_BLOCKS:INTERNAL=FALSE
//Test ITK_COMPILER_SUPPORTS_SSE2_32
ITK_COMPILER_SUPPORTS_SSE2_32:INTERNAL=1
//Test ITK_COMPILER_SUPPORTS_SSE2_64
ITK_COMPILER_SUPPORTS_SSE2_64:INTERNAL=1
//ADVANCED property for variable: ITK_COMPUTER_MEMORY_SIZE
ITK_COMPUTER_MEMORY_SIZE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_CPPCHECK_TEST
ITK_CPPCHECK_TEST-ADVANCED:INTERNAL=1
//Result of TRY_COMPILE
ITK_CPP_FUNCTION:INTERNAL=TRUE
//ADVANCED property for variable: ITK_DOXYGEN_CHM
ITK_DOXYGEN_CHM-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_DOCSET
ITK_DOXYGEN_DOCSET-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_ECLIPSEHELP
ITK_DOXYGEN_ECLIPSEHELP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_HTML
ITK_DOXYGEN_HTML-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_LATEX
ITK_DOXYGEN_LATEX-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_QHP
ITK_DOXYGEN_QHP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_RTF
ITK_DOXYGEN_RTF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DOXYGEN_XML
ITK_DOXYGEN_XML-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_DYNAMIC_LOADING
ITK_DYNAMIC_LOADING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_FORBID_DOWNLOADS
ITK_FORBID_DOWNLOADS-ADVANCED:INTERNAL=1
//Remove code that will become legacy in future releases completely.
ITK_FUTURE_LEGACY_REMOVE:INTERNAL=0
//Result of TRY_COMPILE
ITK_HAS_CPP11_ALIGNAS:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_HAS_CPP11_TYPETRAITS:INTERNAL=TRUE
//Result of TRY_COMPILE
ITK_HAS_GNU_ATTRIBUTE_ALIGNED:INTERNAL=FALSE
//Have symbol InterlockedAdd
ITK_HAS_INTERLOCKEDADD:INTERNAL=1
//Have include tr1/type_traits
ITK_HAS_STLTR1_TR1_TYPE_TRAITS:INTERNAL=
//Have include type_traits
ITK_HAS_STLTR1_TYPE_TRAITS:INTERNAL=1
//ADVANCED property for variable: ITK_LEGACY_REMOVE
ITK_LEGACY_REMOVE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_LEGACY_SILENT
ITK_LEGACY_SILENT-ADVANCED:INTERNAL=1
//Result of TRY_COMPILE
ITK_SUPPORTS_FDSTREAM_HPP:INTERNAL=TRUE
//Result of TRY_COMPILE
ITK_SUPPORTS_TEMPLATED_FRIEND_FUNCTION_WITH_EMPTY_BRACKETS:INTERNAL=TRUE
//Result of TRY_COMPILE
ITK_SUPPORTS_TEMPLATED_FRIEND_FUNCTION_WITH_NULL_STRING:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_SUPPORTS_TEMPLATED_FRIEND_FUNCTION_WITH_TEMPLATE_ARGUMENTS:INTERNAL=FALSE
//Result of TRY_COMPILE
ITK_SUPPORTS_WCHAR_T_FILENAME_CSTYLEIO:INTERNAL=TRUE
//Result of TRY_COMPILE
ITK_SUPPORTS_WCHAR_T_FILENAME_IOSTREAMS_CONSTRUCTORS:INTERNAL=TRUE
//ADVANCED property for variable: ITK_USE_64BITS_IDS
ITK_USE_64BITS_IDS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_BRAINWEB_DATA
ITK_USE_BRAINWEB_DATA-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_CONCEPT_CHECKING
ITK_USE_CONCEPT_CHECKING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_FFTWD
ITK_USE_FFTWD-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_FFTWF
ITK_USE_FFTWF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_FLOAT_SPACE_PRECISION
ITK_USE_FLOAT_SPACE_PRECISION-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_GPU
ITK_USE_GPU-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_KWSTYLE
ITK_USE_KWSTYLE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_STRICT_CONCEPT_CHECKING
ITK_USE_STRICT_CONCEPT_CHECKING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_DOUBLECONVERSION
ITK_USE_SYSTEM_DOUBLECONVERSION-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_EXPAT
ITK_USE_SYSTEM_EXPAT-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_FFTW
ITK_USE_SYSTEM_FFTW-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_GDCM
ITK_USE_SYSTEM_GDCM-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_HDF5
ITK_USE_SYSTEM_HDF5-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_JPEG
ITK_USE_SYSTEM_JPEG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_LIBRARIES
ITK_USE_SYSTEM_LIBRARIES-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_PNG
ITK_USE_SYSTEM_PNG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_SZIP
ITK_USE_SYSTEM_SZIP-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_TIFF
ITK_USE_SYSTEM_TIFF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_VXL
ITK_USE_SYSTEM_VXL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_USE_SYSTEM_ZLIB
ITK_USE_SYSTEM_ZLIB-ADVANCED:INTERNAL=1
//Build external languages support
ITK_WRAPPING:INTERNAL=OFF
//ADVANCED property for variable: ITK_WRAP_JAVA
ITK_WRAP_JAVA-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_WRAP_PERL
ITK_WRAP_PERL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_WRAP_RUBY
ITK_WRAP_RUBY-ADVANCED:INTERNAL=1
//ADVANCED property for variable: ITK_WRAP_TCL
ITK_WRAP_TCL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: KWSTYLE_EXECUTABLE
KWSTYLE_EXECUTABLE-ADVANCED:INTERNAL=1
//Result of TRY_RUN
KWSYS_CHAR_IS_SIGNED:INTERNAL=0
//Result of TRY_COMPILE
KWSYS_CHAR_IS_SIGNED_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ARGUMENT_DEPENDENT_LOOKUP_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ATOLL_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ATOL_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_CSTDDEF_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_CSTDIO_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_ENVIRON_IN_STDLIB_H_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_FULL_SPECIALIZATION_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_LONG_LONG_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_MEMBER_TEMPLATES_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_NULL_TEMPLATE_ARGS_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_RLIMIT64_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_SETENV_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_UNSETENV_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_UTIMENSAT_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS_UTIMES_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_HAS__ATOI64_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_HAS___INT64_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_CXX_SAME_LONG_AND___INT64_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_CXX_SAME_LONG_LONG_AND___INT64_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_C_HAS_PTRDIFF_T_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_C_HAS_SSIZE_T_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_C_TYPE_MACROS_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_IOS_HAVE_BINARY_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_IOS_HAVE_STD_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_IOS_USE_ANSI_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_IOS_USE_SSTREAM_COMPILED:INTERNAL=TRUE
//Checking for Large File Support failed to compile.
KWSYS_LFS_WORKS:INTERNAL=-1
//Result of TRY_COMPILE
KWSYS_LFS_WORKS_COMPILED:INTERNAL=FALSE
//CHECK_TYPE_SIZE: sizeof(char)
KWSYS_SIZEOF_CHAR:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int)
KWSYS_SIZEOF_INT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(long)
KWSYS_SIZEOF_LONG:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(long long)
KWSYS_SIZEOF_LONG_LONG:INTERNAL=8
//CHECK_TYPE_SIZE: sizeof(short)
KWSYS_SIZEOF_SHORT:INTERNAL=2
//CHECK_TYPE_SIZE: sizeof(__int64)
KWSYS_SIZEOF___INT64:INTERNAL=8
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_MAX_SIZE_ARGUMENT_COMPILED:INTERNAL=FALSE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_OBJECTS_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_REBIND_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ALLOCATOR_TEMPLATE_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_ITERATOR_TRAITS_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAS_WSTRING_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_HAVE_STD_COMPILED:INTERNAL=TRUE
//Result of TRY_COMPILE
KWSYS_STL_STRING_HAVE_NEQ_CHAR_COMPILED:INTERNAL=TRUE
//Have includes sys/types.h;ifaddrs.h
KWSYS_SYS_HAS_IFADDRS_H:INTERNAL=
//Have symbol GetProcessMemoryInfo
KWSYS_SYS_HAS_PSAPI:INTERNAL=1
//ADVANCED property for variable: MAKECOMMAND
MAKECOMMAND-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MAXIMUM_NUMBER_OF_HEADERS
MAXIMUM_NUMBER_OF_HEADERS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MEMORYCHECK_COMMAND
MEMORYCHECK_COMMAND-ADVANCED:INTERNAL=1
//ADVANCED property for variable: MEMORYCHECK_SUPPRESSIONS_FILE
MEMORYCHECK_SUPPRESSIONS_FILE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_AnalyzeObjectMapIO
Module_AnalyzeObjectMapIO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_BridgeNumPy
Module_BridgeNumPy-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_HigherOrderAccurateGradient
Module_HigherOrderAccurateGradient-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_IOFDF
Module_IOFDF-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_IOSTL
Module_IOSTL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_IOTransformDCMTK
Module_IOTransformDCMTK-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKAnisotropicSmoothing
Module_ITKAnisotropicSmoothing-ADVANCED:INTERNAL=1
//Request building ITKAnisotropicSmoothing
Module_ITKAnisotropicSmoothing:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKAntiAlias
Module_ITKAntiAlias-ADVANCED:INTERNAL=1
//Request building ITKAntiAlias
Module_ITKAntiAlias:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKBiasCorrection
Module_ITKBiasCorrection-ADVANCED:INTERNAL=1
//Request building ITKBiasCorrection
Module_ITKBiasCorrection:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKBinaryMathematicalMorphology
Module_ITKBinaryMathematicalMorphology-ADVANCED:INTERNAL=1
//Request building ITKBinaryMathematicalMorphology
Module_ITKBinaryMathematicalMorphology:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKBioCell
Module_ITKBioCell-ADVANCED:INTERNAL=1
//Request building ITKBioCell
Module_ITKBioCell:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKClassifiers
Module_ITKClassifiers-ADVANCED:INTERNAL=1
//Request building ITKClassifiers
Module_ITKClassifiers:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKColormap
Module_ITKColormap-ADVANCED:INTERNAL=1
//Request building ITKColormap
Module_ITKColormap:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKCommon
Module_ITKCommon-ADVANCED:INTERNAL=1
//Request building ITKCommon
Module_ITKCommon:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKConnectedComponents
Module_ITKConnectedComponents-ADVANCED:INTERNAL=1
//Request building ITKConnectedComponents
Module_ITKConnectedComponents:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKConvolution
Module_ITKConvolution-ADVANCED:INTERNAL=1
//Request building ITKConvolution
Module_ITKConvolution:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKCurvatureFlow
Module_ITKCurvatureFlow-ADVANCED:INTERNAL=1
//Request building ITKCurvatureFlow
Module_ITKCurvatureFlow:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDCMTK
Module_ITKDCMTK-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKDICOMParser
Module_ITKDICOMParser-ADVANCED:INTERNAL=1
//Request building ITKDICOMParser
Module_ITKDICOMParser:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDeconvolution
Module_ITKDeconvolution-ADVANCED:INTERNAL=1
//Request building ITKDeconvolution
Module_ITKDeconvolution:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDeformableMesh
Module_ITKDeformableMesh-ADVANCED:INTERNAL=1
//Request building ITKDeformableMesh
Module_ITKDeformableMesh:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDenoising
Module_ITKDenoising-ADVANCED:INTERNAL=1
//Request building ITKDenoising
Module_ITKDenoising:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDeprecated
Module_ITKDeprecated-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKDiffusionTensorImage
Module_ITKDiffusionTensorImage-ADVANCED:INTERNAL=1
//Request building ITKDiffusionTensorImage
Module_ITKDiffusionTensorImage:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDisplacementField
Module_ITKDisplacementField-ADVANCED:INTERNAL=1
//Request building ITKDisplacementField
Module_ITKDisplacementField:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDistanceMap
Module_ITKDistanceMap-ADVANCED:INTERNAL=1
//Request building ITKDistanceMap
Module_ITKDistanceMap:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKDoubleConversion
Module_ITKDoubleConversion-ADVANCED:INTERNAL=1
//Request building ITKDoubleConversion
Module_ITKDoubleConversion:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKEigen
Module_ITKEigen-ADVANCED:INTERNAL=1
//Request building ITKEigen
Module_ITKEigen:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKExpat
Module_ITKExpat-ADVANCED:INTERNAL=1
//Request building ITKExpat
Module_ITKExpat:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKFEM
Module_ITKFEM-ADVANCED:INTERNAL=1
//Request building ITKFEM
Module_ITKFEM:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKFEMRegistration
Module_ITKFEMRegistration-ADVANCED:INTERNAL=1
//Request building ITKFEMRegistration
Module_ITKFEMRegistration:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKFFT
Module_ITKFFT-ADVANCED:INTERNAL=1
//Request building ITKFFT
Module_ITKFFT:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKFastMarching
Module_ITKFastMarching-ADVANCED:INTERNAL=1
//Request building ITKFastMarching
Module_ITKFastMarching:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKFiniteDifference
Module_ITKFiniteDifference-ADVANCED:INTERNAL=1
//Request building ITKFiniteDifference
Module_ITKFiniteDifference:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGDCM
Module_ITKGDCM-ADVANCED:INTERNAL=1
//Request building ITKGDCM
Module_ITKGDCM:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGIFTI
Module_ITKGIFTI-ADVANCED:INTERNAL=1
//Request building ITKGIFTI
Module_ITKGIFTI:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUAnisotropicSmoothing
Module_ITKGPUAnisotropicSmoothing-ADVANCED:INTERNAL=1
//Request building ITKGPUAnisotropicSmoothing
Module_ITKGPUAnisotropicSmoothing:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUCommon
Module_ITKGPUCommon-ADVANCED:INTERNAL=1
//Request building ITKGPUCommon
Module_ITKGPUCommon:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUFiniteDifference
Module_ITKGPUFiniteDifference-ADVANCED:INTERNAL=1
//Request building ITKGPUFiniteDifference
Module_ITKGPUFiniteDifference:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUImageFilterBase
Module_ITKGPUImageFilterBase-ADVANCED:INTERNAL=1
//Request building ITKGPUImageFilterBase
Module_ITKGPUImageFilterBase:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUPDEDeformableRegistration
Module_ITKGPUPDEDeformableRegistration-ADVANCED:INTERNAL=1
//Request building ITKGPUPDEDeformableRegistration
Module_ITKGPUPDEDeformableRegistration:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPURegistrationCommon
Module_ITKGPURegistrationCommon-ADVANCED:INTERNAL=1
//Request building ITKGPURegistrationCommon
Module_ITKGPURegistrationCommon:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUSmoothing
Module_ITKGPUSmoothing-ADVANCED:INTERNAL=1
//Request building ITKGPUSmoothing
Module_ITKGPUSmoothing:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKGPUThresholding
Module_ITKGPUThresholding-ADVANCED:INTERNAL=1
//Request building ITKGPUThresholding
Module_ITKGPUThresholding:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKHDF5
Module_ITKHDF5-ADVANCED:INTERNAL=1
//Request building ITKHDF5
Module_ITKHDF5:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOBMP
Module_ITKIOBMP-ADVANCED:INTERNAL=1
//Request building ITKIOBMP
Module_ITKIOBMP:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOBioRad
Module_ITKIOBioRad-ADVANCED:INTERNAL=1
//Request building ITKIOBioRad
Module_ITKIOBioRad:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOCSV
Module_ITKIOCSV-ADVANCED:INTERNAL=1
//Request building ITKIOCSV
Module_ITKIOCSV:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIODCMTK
Module_ITKIODCMTK-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKIOGDCM
Module_ITKIOGDCM-ADVANCED:INTERNAL=1
//Request building ITKIOGDCM
Module_ITKIOGDCM:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOGE
Module_ITKIOGE-ADVANCED:INTERNAL=1
//Request building ITKIOGE
Module_ITKIOGE:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOGIPL
Module_ITKIOGIPL-ADVANCED:INTERNAL=1
//Request building ITKIOGIPL
Module_ITKIOGIPL:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOHDF5
Module_ITKIOHDF5-ADVANCED:INTERNAL=1
//Request building ITKIOHDF5
Module_ITKIOHDF5:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOIPL
Module_ITKIOIPL-ADVANCED:INTERNAL=1
//Request building ITKIOIPL
Module_ITKIOIPL:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOImageBase
Module_ITKIOImageBase-ADVANCED:INTERNAL=1
//Request building ITKIOImageBase
Module_ITKIOImageBase:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOJPEG
Module_ITKIOJPEG-ADVANCED:INTERNAL=1
//Request building ITKIOJPEG
Module_ITKIOJPEG:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOLSM
Module_ITKIOLSM-ADVANCED:INTERNAL=1
//Request building ITKIOLSM
Module_ITKIOLSM:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOMINC
Module_ITKIOMINC-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKIOMRC
Module_ITKIOMRC-ADVANCED:INTERNAL=1
//Request building ITKIOMRC
Module_ITKIOMRC:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOMesh
Module_ITKIOMesh-ADVANCED:INTERNAL=1
//Request building ITKIOMesh
Module_ITKIOMesh:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOMeta
Module_ITKIOMeta-ADVANCED:INTERNAL=1
//Request building ITKIOMeta
Module_ITKIOMeta:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIONIFTI
Module_ITKIONIFTI-ADVANCED:INTERNAL=1
//Request building ITKIONIFTI
Module_ITKIONIFTI:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIONRRD
Module_ITKIONRRD-ADVANCED:INTERNAL=1
//Request building ITKIONRRD
Module_ITKIONRRD:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOPNG
Module_ITKIOPNG-ADVANCED:INTERNAL=1
//Request building ITKIOPNG
Module_ITKIOPNG:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOPhilipsREC
Module_ITKIOPhilipsREC-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKIORAW
Module_ITKIORAW-ADVANCED:INTERNAL=1
//Request building ITKIORAW
Module_ITKIORAW:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOSiemens
Module_ITKIOSiemens-ADVANCED:INTERNAL=1
//Request building ITKIOSiemens
Module_ITKIOSiemens:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOSpatialObjects
Module_ITKIOSpatialObjects-ADVANCED:INTERNAL=1
//Request building ITKIOSpatialObjects
Module_ITKIOSpatialObjects:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOStimulate
Module_ITKIOStimulate-ADVANCED:INTERNAL=1
//Request building ITKIOStimulate
Module_ITKIOStimulate:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOTIFF
Module_ITKIOTIFF-ADVANCED:INTERNAL=1
//Request building ITKIOTIFF
Module_ITKIOTIFF:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOTransformBase
Module_ITKIOTransformBase-ADVANCED:INTERNAL=1
//Request building ITKIOTransformBase
Module_ITKIOTransformBase:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOTransformHDF5
Module_ITKIOTransformHDF5-ADVANCED:INTERNAL=1
//Request building ITKIOTransformHDF5
Module_ITKIOTransformHDF5:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOTransformInsightLegacy
Module_ITKIOTransformInsightLegacy-ADVANCED:INTERNAL=1
//Request building ITKIOTransformInsightLegacy
Module_ITKIOTransformInsightLegacy:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOTransformMatlab
Module_ITKIOTransformMatlab-ADVANCED:INTERNAL=1
//Request building ITKIOTransformMatlab
Module_ITKIOTransformMatlab:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOVTK
Module_ITKIOVTK-ADVANCED:INTERNAL=1
//Request building ITKIOVTK
Module_ITKIOVTK:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIOXML
Module_ITKIOXML-ADVANCED:INTERNAL=1
//Request building ITKIOXML
Module_ITKIOXML:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageAdaptors
Module_ITKImageAdaptors-ADVANCED:INTERNAL=1
//Request building ITKImageAdaptors
Module_ITKImageAdaptors:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageCompare
Module_ITKImageCompare-ADVANCED:INTERNAL=1
//Request building ITKImageCompare
Module_ITKImageCompare:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageCompose
Module_ITKImageCompose-ADVANCED:INTERNAL=1
//Request building ITKImageCompose
Module_ITKImageCompose:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageFeature
Module_ITKImageFeature-ADVANCED:INTERNAL=1
//Request building ITKImageFeature
Module_ITKImageFeature:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageFilterBase
Module_ITKImageFilterBase-ADVANCED:INTERNAL=1
//Request building ITKImageFilterBase
Module_ITKImageFilterBase:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageFunction
Module_ITKImageFunction-ADVANCED:INTERNAL=1
//Request building ITKImageFunction
Module_ITKImageFunction:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageFusion
Module_ITKImageFusion-ADVANCED:INTERNAL=1
//Request building ITKImageFusion
Module_ITKImageFusion:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageGradient
Module_ITKImageGradient-ADVANCED:INTERNAL=1
//Request building ITKImageGradient
Module_ITKImageGradient:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageGrid
Module_ITKImageGrid-ADVANCED:INTERNAL=1
//Request building ITKImageGrid
Module_ITKImageGrid:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageIntensity
Module_ITKImageIntensity-ADVANCED:INTERNAL=1
//Request building ITKImageIntensity
Module_ITKImageIntensity:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageLabel
Module_ITKImageLabel-ADVANCED:INTERNAL=1
//Request building ITKImageLabel
Module_ITKImageLabel:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageNoise
Module_ITKImageNoise-ADVANCED:INTERNAL=1
//Request building ITKImageNoise
Module_ITKImageNoise:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageSources
Module_ITKImageSources-ADVANCED:INTERNAL=1
//Request building ITKImageSources
Module_ITKImageSources:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKImageStatistics
Module_ITKImageStatistics-ADVANCED:INTERNAL=1
//Request building ITKImageStatistics
Module_ITKImageStatistics:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKIntegratedTest
Module_ITKIntegratedTest-ADVANCED:INTERNAL=1
//Request building ITKIntegratedTest
Module_ITKIntegratedTest:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKJPEG
Module_ITKJPEG-ADVANCED:INTERNAL=1
//Request building ITKJPEG
Module_ITKJPEG:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKKLMRegionGrowing
Module_ITKKLMRegionGrowing-ADVANCED:INTERNAL=1
//Request building ITKKLMRegionGrowing
Module_ITKKLMRegionGrowing:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKKWSys
Module_ITKKWSys-ADVANCED:INTERNAL=1
//Request building ITKKWSys
Module_ITKKWSys:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKLabelMap
Module_ITKLabelMap-ADVANCED:INTERNAL=1
//Request building ITKLabelMap
Module_ITKLabelMap:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKLabelVoting
Module_ITKLabelVoting-ADVANCED:INTERNAL=1
//Request building ITKLabelVoting
Module_ITKLabelVoting:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKLevelSets
Module_ITKLevelSets-ADVANCED:INTERNAL=1
//Request building ITKLevelSets
Module_ITKLevelSets:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKLevelSetsv4
Module_ITKLevelSetsv4-ADVANCED:INTERNAL=1
//Request building ITKLevelSetsv4
Module_ITKLevelSetsv4:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKLevelSetsv4Visualization
Module_ITKLevelSetsv4Visualization-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKMINC
Module_ITKMINC-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKMarkovRandomFieldsClassifiers
Module_ITKMarkovRandomFieldsClassifiers-ADVANCED:INTERNAL=1
//Request building ITKMarkovRandomFieldsClassifiers
Module_ITKMarkovRandomFieldsClassifiers:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKMathematicalMorphology
Module_ITKMathematicalMorphology-ADVANCED:INTERNAL=1
//Request building ITKMathematicalMorphology
Module_ITKMathematicalMorphology:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKMesh
Module_ITKMesh-ADVANCED:INTERNAL=1
//Request building ITKMesh
Module_ITKMesh:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKMetaIO
Module_ITKMetaIO-ADVANCED:INTERNAL=1
//Request building ITKMetaIO
Module_ITKMetaIO:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKMetricsv4
Module_ITKMetricsv4-ADVANCED:INTERNAL=1
//Request building ITKMetricsv4
Module_ITKMetricsv4:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKNIFTI
Module_ITKNIFTI-ADVANCED:INTERNAL=1
//Request building ITKNIFTI
Module_ITKNIFTI:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKNarrowBand
Module_ITKNarrowBand-ADVANCED:INTERNAL=1
//Request building ITKNarrowBand
Module_ITKNarrowBand:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKNetlib
Module_ITKNetlib-ADVANCED:INTERNAL=1
//Request building ITKNetlib
Module_ITKNetlib:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKNeuralNetworks
Module_ITKNeuralNetworks-ADVANCED:INTERNAL=1
//Request building ITKNeuralNetworks
Module_ITKNeuralNetworks:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKNrrdIO
Module_ITKNrrdIO-ADVANCED:INTERNAL=1
//Request building ITKNrrdIO
Module_ITKNrrdIO:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKOpenJPEG
Module_ITKOpenJPEG-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKOptimizers
Module_ITKOptimizers-ADVANCED:INTERNAL=1
//Request building ITKOptimizers
Module_ITKOptimizers:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKOptimizersv4
Module_ITKOptimizersv4-ADVANCED:INTERNAL=1
//Request building ITKOptimizersv4
Module_ITKOptimizersv4:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKPDEDeformableRegistration
Module_ITKPDEDeformableRegistration-ADVANCED:INTERNAL=1
//Request building ITKPDEDeformableRegistration
Module_ITKPDEDeformableRegistration:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKPNG
Module_ITKPNG-ADVANCED:INTERNAL=1
//Request building ITKPNG
Module_ITKPNG:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKPath
Module_ITKPath-ADVANCED:INTERNAL=1
//Request building ITKPath
Module_ITKPath:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKPolynomials
Module_ITKPolynomials-ADVANCED:INTERNAL=1
//Request building ITKPolynomials
Module_ITKPolynomials:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKQuadEdgeMesh
Module_ITKQuadEdgeMesh-ADVANCED:INTERNAL=1
//Request building ITKQuadEdgeMesh
Module_ITKQuadEdgeMesh:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKQuadEdgeMeshFiltering
Module_ITKQuadEdgeMeshFiltering-ADVANCED:INTERNAL=1
//Request building ITKQuadEdgeMeshFiltering
Module_ITKQuadEdgeMeshFiltering:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKRegionGrowing
Module_ITKRegionGrowing-ADVANCED:INTERNAL=1
//Request building ITKRegionGrowing
Module_ITKRegionGrowing:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKRegistrationCommon
Module_ITKRegistrationCommon-ADVANCED:INTERNAL=1
//Request building ITKRegistrationCommon
Module_ITKRegistrationCommon:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKRegistrationMethodsv4
Module_ITKRegistrationMethodsv4-ADVANCED:INTERNAL=1
//Request building ITKRegistrationMethodsv4
Module_ITKRegistrationMethodsv4:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKReview
Module_ITKReview-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKSignedDistanceFunction
Module_ITKSignedDistanceFunction-ADVANCED:INTERNAL=1
//Request building ITKSignedDistanceFunction
Module_ITKSignedDistanceFunction:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKSmoothing
Module_ITKSmoothing-ADVANCED:INTERNAL=1
//Request building ITKSmoothing
Module_ITKSmoothing:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKSpatialFunction
Module_ITKSpatialFunction-ADVANCED:INTERNAL=1
//Request building ITKSpatialFunction
Module_ITKSpatialFunction:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKSpatialObjects
Module_ITKSpatialObjects-ADVANCED:INTERNAL=1
//Request building ITKSpatialObjects
Module_ITKSpatialObjects:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKStatistics
Module_ITKStatistics-ADVANCED:INTERNAL=1
//Request building ITKStatistics
Module_ITKStatistics:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKTIFF
Module_ITKTIFF-ADVANCED:INTERNAL=1
//Request building ITKTIFF
Module_ITKTIFF:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKTestKernel
Module_ITKTestKernel-ADVANCED:INTERNAL=1
//Request building ITKTestKernel
Module_ITKTestKernel:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKThresholding
Module_ITKThresholding-ADVANCED:INTERNAL=1
//Request building ITKThresholding
Module_ITKThresholding:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKTransform
Module_ITKTransform-ADVANCED:INTERNAL=1
//Request building ITKTransform
Module_ITKTransform:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKV3Compatibility
Module_ITKV3Compatibility-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKVNL
Module_ITKVNL-ADVANCED:INTERNAL=1
//Request building ITKVNL
Module_ITKVNL:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVNLInstantiation
Module_ITKVNLInstantiation-ADVANCED:INTERNAL=1
//Request building ITKVNLInstantiation
Module_ITKVNLInstantiation:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVTK
Module_ITKVTK-ADVANCED:INTERNAL=1
//Request building ITKVTK
Module_ITKVTK:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVideoBridgeOpenCV
Module_ITKVideoBridgeOpenCV-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKVideoBridgeVXL
Module_ITKVideoBridgeVXL-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKVideoCore
Module_ITKVideoCore-ADVANCED:INTERNAL=1
//Request building ITKVideoCore
Module_ITKVideoCore:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVideoFiltering
Module_ITKVideoFiltering-ADVANCED:INTERNAL=1
//Request building ITKVideoFiltering
Module_ITKVideoFiltering:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVideoIO
Module_ITKVideoIO-ADVANCED:INTERNAL=1
//Request building ITKVideoIO
Module_ITKVideoIO:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVoronoi
Module_ITKVoronoi-ADVANCED:INTERNAL=1
//Request building ITKVoronoi
Module_ITKVoronoi:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKVtkGlue
Module_ITKVtkGlue-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ITKWatersheds
Module_ITKWatersheds-ADVANCED:INTERNAL=1
//Request building ITKWatersheds
Module_ITKWatersheds:INTERNAL=OFF
//ADVANCED property for variable: Module_ITKZLIB
Module_ITKZLIB-ADVANCED:INTERNAL=1
//Request building ITKZLIB
Module_ITKZLIB:INTERNAL=OFF
//ADVANCED property for variable: Module_LabelErodeDilate
Module_LabelErodeDilate-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_LesionSizingToolkit
Module_LesionSizingToolkit-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_MGHIO
Module_MGHIO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_MinimalPathExtraction
Module_MinimalPathExtraction-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_ParabolicMorphology
Module_ParabolicMorphology-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SCIFIO
Module_SCIFIO-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SkullStrip
Module_SkullStrip-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SmoothingRecursiveYvvGaussianFilter
Module_SmoothingRecursiveYvvGaussianFilter-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SphinxExamples
Module_SphinxExamples-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SplitComponents
Module_SplitComponents-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_SubdivisionQuadEdgeMeshFilter
Module_SubdivisionQuadEdgeMeshFilter-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_VariationalRegistration
Module_VariationalRegistration-ADVANCED:INTERNAL=1
//ADVANCED property for variable: Module_WikiExamples
Module_WikiExamples-ADVANCED:INTERNAL=1
//Have library c
NOT_NEED_LIBNSL:INTERNAL=
OPENJPEG_INSTALL_PACKAGE_DIR:INTERNAL=lib/gdcmopenjpeg-2.0
//ADVANCED property for variable: P4COMMAND
P4COMMAND-ADVANCED:INTERNAL=1
//ADVANCED property for variable: PERL_EXECUTABLE
PERL_EXECUTABLE-ADVANCED:INTERNAL=1
//ADVANCED property for variable: PYTHON_EXECUTABLE
PYTHON_EXECUTABLE-ADVANCED:INTERNAL=1
//The 22nd bit of 32-bit floating-point quiet NaN.
QNANHIBIT:INTERNAL=1
//Result of TRY_RUN
QNANHIBIT_VALUE:INTERNAL=1
//ADVANCED property for variable: SCPCOMMAND
SCPCOMMAND-ADVANCED:INTERNAL=1
//ADVANCED property for variable: SITE
SITE-ADVANCED:INTERNAL=1
//CHECK_TYPE_SIZE: sizeof(int)
SIZEOF_INT:INTERNAL=4
//CHECK_TYPE_SIZE: sizeof(long)
SIZEOF_LONG:INTERNAL=4
//ADVANCED property for variable: SLURM_SBATCH_COMMAND
SLURM_SBATCH_COMMAND-ADVANCED:INTERNAL=1
//ADVANCED property for variable: SLURM_SRUN_COMMAND
SLURM_SRUN_COMMAND-ADVANCED:INTERNAL=1
//Have function strsignal
SOCKETXX_HAVE_STRSIGNAL:INTERNAL=
//ADVANCED property for variable: SVNCOMMAND
SVNCOMMAND-ADVANCED:INTERNAL=1
//VXL test 
VCL_ALLOWS_INLINE_INSTANTIATION:INTERNAL=1
//VXL test 
VCL_ALLOWS_NAMESPACE_STD:INTERNAL=1
//VXL test 
VCL_CANNOT_SPECIALIZE_CV:INTERNAL=1
//VXL test 
VCL_CAN_DO_COMPLETE_DEFAULT_TYPE_PARAMETER:INTERNAL=1
//VXL test 
VCL_CAN_DO_IMPLICIT_TEMPLATES:INTERNAL=1
//VXL test 
VCL_CAN_DO_NON_TYPE_FUNCTION_TEMPLATE_PARAMETER:INTERNAL=1
//VXL test 
VCL_CAN_DO_PARTIAL_SPECIALIZATION:INTERNAL=1
//VXL test 
VCL_CAN_DO_STATIC_TEMPLATE_MEMBER:INTERNAL=1
//VXL test 
VCL_CAN_DO_TEMPLATE_DEFAULT_TYPE_PARAMETER:INTERNAL=1
//VXL test  (successful run)
VCL_CHAR_IS_SIGNED:INTERNAL=1
//Result of TRY_COMPILE
VCL_CHAR_IS_SIGNED_COMPILED:INTERNAL=TRUE
//VXL test  (successful run)
VCL_COMPLEX_POW_WORKS:INTERNAL=1
//Result of TRY_COMPILE
VCL_COMPLEX_POW_WORKS_COMPILED:INTERNAL=TRUE
//Have include algorithm
VCL_CXX_HAS_HEADER_ALGORITHM:INTERNAL=1
//Have include bitset
VCL_CXX_HAS_HEADER_BITSET:INTERNAL=1
//Have include cassert
VCL_CXX_HAS_HEADER_CASSERT:INTERNAL=1
//Have include cctype
VCL_CXX_HAS_HEADER_CCTYPE:INTERNAL=1
//Have include cerrno
VCL_CXX_HAS_HEADER_CERRNO:INTERNAL=1
//Have include cfloat
VCL_CXX_HAS_HEADER_CFLOAT:INTERNAL=1
//Have include ciso646
VCL_CXX_HAS_HEADER_CISO646:INTERNAL=1
//Have include climits
VCL_CXX_HAS_HEADER_CLIMITS:INTERNAL=1
//Have include clocale
VCL_CXX_HAS_HEADER_CLOCALE:INTERNAL=1
//Have include cmath
VCL_CXX_HAS_HEADER_CMATH:INTERNAL=1
//Have include complex
VCL_CXX_HAS_HEADER_COMPLEX:INTERNAL=1
//Have include csetjmp
VCL_CXX_HAS_HEADER_CSETJMP:INTERNAL=1
//Have include csignal
VCL_CXX_HAS_HEADER_CSIGNAL:INTERNAL=1
//Have include cstdarg
VCL_CXX_HAS_HEADER_CSTDARG:INTERNAL=1
//Have include cstddef
VCL_CXX_HAS_HEADER_CSTDDEF:INTERNAL=1
//Have include cstdio
VCL_CXX_HAS_HEADER_CSTDIO:INTERNAL=1
//Have include cstdlib
VCL_CXX_HAS_HEADER_CSTDLIB:INTERNAL=1
//Have include cstring
VCL_CXX_HAS_HEADER_CSTRING:INTERNAL=1
//Have include ctime
VCL_CXX_HAS_HEADER_CTIME:INTERNAL=1
//Have include cwchar
VCL_CXX_HAS_HEADER_CWCHAR:INTERNAL=1
//Have include cwctype
VCL_CXX_HAS_HEADER_CWCTYPE:INTERNAL=1
//Have include deque
VCL_CXX_HAS_HEADER_DEQUE:INTERNAL=1
//Have include exception
VCL_CXX_HAS_HEADER_EXCEPTION:INTERNAL=1
//Have include fstream
VCL_CXX_HAS_HEADER_FSTREAM:INTERNAL=1
//Have include functional
VCL_CXX_HAS_HEADER_FUNCTIONAL:INTERNAL=1
//Have include iomanip
VCL_CXX_HAS_HEADER_IOMANIP:INTERNAL=1
//Have include ios
VCL_CXX_HAS_HEADER_IOS:INTERNAL=1
//Have include iosfwd
VCL_CXX_HAS_HEADER_IOSFWD:INTERNAL=1
//Have include iostream
VCL_CXX_HAS_HEADER_IOSTREAM:INTERNAL=1
//Have include iso646.h
VCL_CXX_HAS_HEADER_ISO646_H:INTERNAL=1
//Have include istream
VCL_CXX_HAS_HEADER_ISTREAM:INTERNAL=1
//Have include iterator
VCL_CXX_HAS_HEADER_ITERATOR:INTERNAL=1
//Have include limits
VCL_CXX_HAS_HEADER_LIMITS:INTERNAL=1
//Have include list
VCL_CXX_HAS_HEADER_LIST:INTERNAL=1
//Have include locale
VCL_CXX_HAS_HEADER_LOCALE:INTERNAL=1
//Have include map
VCL_CXX_HAS_HEADER_MAP:INTERNAL=1
//Have include memory
VCL_CXX_HAS_HEADER_MEMORY:INTERNAL=1
//Have include new
VCL_CXX_HAS_HEADER_NEW:INTERNAL=1
//Have include numeric
VCL_CXX_HAS_HEADER_NUMERIC:INTERNAL=1
//Have include ostream
VCL_CXX_HAS_HEADER_OSTREAM:INTERNAL=1
//Have include queue
VCL_CXX_HAS_HEADER_QUEUE:INTERNAL=1
//Have include set
VCL_CXX_HAS_HEADER_SET:INTERNAL=1
//Have include sstream
VCL_CXX_HAS_HEADER_SSTREAM:INTERNAL=1
//Have include stack
VCL_CXX_HAS_HEADER_STACK:INTERNAL=1
//Have include stdexcept
VCL_CXX_HAS_HEADER_STDEXCEPT:INTERNAL=1
//Have include streambuf
VCL_CXX_HAS_HEADER_STREAMBUF:INTERNAL=1
//Have include string
VCL_CXX_HAS_HEADER_STRING:INTERNAL=1
//Have include strstream
VCL_CXX_HAS_HEADER_STRSTREAM:INTERNAL=1
//Have include typeinfo
VCL_CXX_HAS_HEADER_TYPEINFO:INTERNAL=1
//Have include utility
VCL_CXX_HAS_HEADER_UTILITY:INTERNAL=1
//Have include valarray
VCL_CXX_HAS_HEADER_VALARRAY:INTERNAL=1
//Have include vector
VCL_CXX_HAS_HEADER_VECTOR:INTERNAL=1
//Have include tr1/memory
VCL_CXX_HAS_TR1:INTERNAL=
//VXL test 
VCL_DEFAULT_VALUE:INTERNAL=1
//VXL test 
VCL_DEFINE_SPECIALIZATION:INTERNAL=1
//VXL test 
VCL_FOR_SCOPE_HACK:INTERNAL=1
//VXL test 
VCL_HAS_BOOL:INTERNAL=1
//VXL test 
VCL_HAS_DYNAMIC_CAST:INTERNAL=1
//VXL test 
VCL_HAS_EXCEPTIONS:INTERNAL=1
//VXL test 
VCL_HAS_EXPLICIT:INTERNAL=1
//Test 
VCL_HAS_EXPORT:INTERNAL=0
//VXL test  (successful run)
VCL_HAS_LFS:INTERNAL=1
//Result of TRY_COMPILE
VCL_HAS_LFS_COMPILED:INTERNAL=TRUE
//VXL test 
VCL_HAS_LONG_LONG:INTERNAL=1
//VXL test 
VCL_HAS_MEMBER_TEMPLATES:INTERNAL=1
//VXL test 
VCL_HAS_MUTABLE:INTERNAL=1
//Test 
VCL_HAS_NAMESPACES:INTERNAL=0
//VXL test 
VCL_HAS_RTTI:INTERNAL=1
//VXL test  (successful run)
VCL_HAS_SLICED_DESTRUCTOR_BUG:INTERNAL=1
//Result of TRY_COMPILE
VCL_HAS_SLICED_DESTRUCTOR_BUG_COMPILED:INTERNAL=TRUE
//Test  (failed to compile)
VCL_HAS_TEMPLATE_SYMBOLS:INTERNAL=0
//Result of TRY_COMPILE
VCL_HAS_TEMPLATE_SYMBOLS_COMPILED:INTERNAL=FALSE
//VXL test 
VCL_HAS_TYPENAME:INTERNAL=1
//VXL test  (successful run)
VCL_HAS_WORKING_STRINGSTREAM:INTERNAL=1
//Result of TRY_COMPILE
VCL_HAS_WORKING_STRINGSTREAM_COMPILED:INTERNAL=TRUE
//ADVANCED property for variable: VCL_INCLUDE_CXX_0X
VCL_INCLUDE_CXX_0X-ADVANCED:INTERNAL=1
//Have symbol std::shared_ptr<void>
VCL_MEMORY_HAS_SHARED_PTR:INTERNAL=1
//VXL test 
VCL_NEEDS_INLINE_INSTANTIATION:INTERNAL=1
//Test 
VCL_NEEDS_NAMESPACE_STD:INTERNAL=0
//VXL test 
VCL_NEED_FRIEND_FOR_TEMPLATE_OVERLOAD:INTERNAL=1
//VXL test 
VCL_NO_STATIC_DATA_MEMBERS:INTERNAL=1
//Test 
VCL_NULL_TMPL_ARGS:INTERNAL=0
//VXL test  (successful run)
VCL_NUMERIC_LIMITS_HAS_INFINITY:INTERNAL=1
//Result of TRY_COMPILE
VCL_NUMERIC_LIMITS_HAS_INFINITY_COMPILED:INTERNAL=TRUE
//VXL test 
VCL_OVERLOAD_CAST:INTERNAL=1
//VXL test  (successful run)
VCL_PROCESSOR_HAS_INFINITY:INTERNAL=1
//Result of TRY_COMPILE
VCL_PROCESSOR_HAS_INFINITY_COMPILED:INTERNAL=TRUE
//Test 
VCL_STATIC_CONST_INIT_FLOAT:INTERNAL=0
//VXL test 
VCL_STATIC_CONST_INIT_INT:INTERNAL=1
//VXL test 
VCL_STATIC_CONST_INIT_NO_DEFN:INTERNAL=1
//VXL test 
VCL_SUNPRO_CLASS_SCOPE_HACK:INTERNAL=1
//VXL test 
VCL_TEMPLATE_MATCHES_TOO_OFTEN:INTERNAL=1
//Have symbol std::tr1::shared_ptr<void>
VCL_TR1_MEMORY_HAS_SHARED_PTR:INTERNAL=
//ADVANCED property for variable: VNL_CONFIG_CHECK_BOUNDS
VNL_CONFIG_CHECK_BOUNDS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: VNL_CONFIG_ENABLE_SSE2
VNL_CONFIG_ENABLE_SSE2-ADVANCED:INTERNAL=1
//ADVANCED property for variable: VNL_CONFIG_ENABLE_SSE2_ROUNDING
VNL_CONFIG_ENABLE_SSE2_ROUNDING-ADVANCED:INTERNAL=1
//ADVANCED property for variable: VNL_CONFIG_LEGACY_METHODS
VNL_CONFIG_LEGACY_METHODS-ADVANCED:INTERNAL=1
//ADVANCED property for variable: VNL_CONFIG_THREAD_SAFE
VNL_CONFIG_THREAD_SAFE-ADVANCED:INTERNAL=1
//Result of TEST_BIG_ENDIAN
VXL_BIG_ENDIAN:INTERNAL=0
//VXL test result
VXL_BYTE:INTERNAL=char
//Serial number of last configuration
VXL_CONFIG_SERIAL_LAST:INTERNAL=2009-04-28-001
//Have symbol finite
VXL_C_MATH_HAS_FINITE:INTERNAL=
//Have symbol finitef
VXL_C_MATH_HAS_FINITEF:INTERNAL=
//Have symbol finitel
VXL_C_MATH_HAS_FINITEL:INTERNAL=
//VXL test 
VXL_C_MATH_HAS_LROUND:INTERNAL=1
//Have symbol sqrtf
VXL_C_MATH_HAS_SQRTF:INTERNAL=1
//VXL test 
VXL_HAS_ALIGNED_MALLOC:INTERNAL=1
//VXL test result
VXL_HAS_BYTE:INTERNAL=1
//VXL test 
VXL_HAS_DBGHELP_H:INTERNAL=1
//Have include emmintrin.h
VXL_HAS_EMMINTRIN_H:INTERNAL=1
//Have include ieeefp.h
VXL_HAS_IEEEFP_H:INTERNAL=
//VXL test result
VXL_HAS_IEEE_128:INTERNAL=0
//VXL test result
VXL_HAS_IEEE_32:INTERNAL=1
//VXL test result
VXL_HAS_IEEE_64:INTERNAL=1
//VXL test result
VXL_HAS_IEEE_96:INTERNAL=0
//VXL test result
VXL_HAS_INT_16:INTERNAL=1
//VXL test result
VXL_HAS_INT_32:INTERNAL=1
//VXL test result
VXL_HAS_INT_64:INTERNAL=1
//VXL test result
VXL_HAS_INT_8:INTERNAL=1
//Test 
VXL_HAS_MINGW_ALIGNED_MALLOC:INTERNAL=0
//VXL test 
VXL_HAS_MM_MALLOC:INTERNAL=1
//Test 
VXL_HAS_POSIX_MEMALIGN:INTERNAL=0
//Have include pthread.h
VXL_HAS_PTHREAD_H:INTERNAL=
//Have include semaphore.h
VXL_HAS_SEMAPHORE_H:INTERNAL=
//VXL test  (successful run)
VXL_HAS_SSE2_HARDWARE_SUPPORT:INTERNAL=1
//Result of TRY_COMPILE
VXL_HAS_SSE2_HARDWARE_SUPPORT_COMPILED:INTERNAL=TRUE
//VXL test 
VXL_HAS_WIN_WCHAR_T:INTERNAL=1
//Have symbol finite
VXL_IEEEFP_HAS_FINITE:INTERNAL=
//VXL test result
VXL_IEEE_128:INTERNAL=void
//VXL test result
VXL_IEEE_32:INTERNAL=float
//VXL test result
VXL_IEEE_64:INTERNAL=double
//VXL test result
VXL_IEEE_96:INTERNAL=void
//VXL test result
VXL_INT_16:INTERNAL=short
//VXL test result
VXL_INT_32:INTERNAL=int
//VXL test result
VXL_INT_64:INTERNAL=long long
//VXL test result
VXL_INT_8:INTERNAL=char
//VXL test 
VXL_PIC_COMPATIBLE:INTERNAL=1
//Have symbol drand48
VXL_STDLIB_HAS_DRAND48:INTERNAL=
//Have symbol lrand48
VXL_STDLIB_HAS_LRAND48:INTERNAL=
//VXL test 
VXL_STDLIB_HAS_QSORT:INTERNAL=1
//Have symbol srand48
VXL_STDLIB_HAS_SRAND48:INTERNAL=
//Test 
VXL_UNISTD_USLEEP_IS_VOID:INTERNAL=0
//ADVANCED property for variable: VXL_UPDATE_CONFIGURATION
VXL_UPDATE_CONFIGURATION-ADVANCED:INTERNAL=1
//Result of TEST_BIG_ENDIAN
WORDS_BIGENDIAN:INTERNAL=0
//Result of TRY_COMPILE
_using_libcxx:INTERNAL=FALSE

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From a.tunde.szilagyi at gmail.com  Wed Nov 18 13:34:45 2015
From: a.tunde.szilagyi at gmail.com (=?UTF-8?B?VMO8bmRlIFN6aWzDoWd5aQ==?=)
Date: Wed, 18 Nov 2015 18:34:45 -0000
Subject: [ITK] ITK Toolkit?
In-Reply-To: <CAPf2UMSL4ho2p6RzFY52VMqKLsH0Ub6XSR7LFML0ekQ94ZJ+gg@mail.gmail.com>
References: <CAMeM8yapA6cV9qVUvH=iF8yhMBseKQRszGmXwg059gcAHxyfAQ@mail.gmail.com>
 <CAPf2UMQqUPuVrH3gOtkHgCtBXa+ezzBVFZD6YPEYiUBgxtJbvA@mail.gmail.com>
 <CAPf2UMTyhY9L3cq7dz3NGQpffvwG8iZvf=gypSxod8KqvvG1aw@mail.gmail.com>
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Message-ID: <CAMeM8yZxdtbng1Rf8s5f8NW8eTsFcfYXeVcvb0XEsH8R8fEdPw@mail.gmail.com>

Why is this information different from the one in the official (attached)
tutorial, slide 27-28? Many thanks.

On 18 November 2015 at 19:15, D?enan Zuki? <dzenanz at gmail.com> wrote:

> ITK is largely a template library, which means it does not have a lot of
> DLLs. Including headers is mostly sufficient. Also, ~/ITK_bin/*lib*/Debug/
> should contain library files, *NOT* ~/ITK_bin/*bin*/Debug/.
>
> It looks like you have successfully built ITK. Now you can configure
> projects which require ITK by pointing them (setting ITK_DIR variable) to
> *~/ITK_bin/*.
>
> The simplest possible CMake configuration file for a program using ITK is
> attached. You just need to provide C++ code (tester.cpp). It could be one
> of the Wiki examples <http://itk.org/Wiki/ITK/Examples>. Then configure
> it with CMake, and build it using the same generator as ITK (VS2015 x64).
>
> HTH
>
> On Wed, Nov 18, 2015 at 12:25 PM, T?nde Szil?gyi <
> a.tunde.szilagyi at gmail.com> wrote:
>
>> Hi D?enan,
>>
>> Many thanks - there was a different patch that needed to be applied. See
>> the description in the attached document. I summarize things below.
>>
>> System: Windows 10 64bit OS
>>
>> In summary:
>> - re-installed Git [master] + patch that solved the errors
>> - re-installed CMake
>> - Configured and Generated Project in CMake (NO errors)
>> - BUILD-ALL in VS 14 2015 (NO error message)
>>
>> Result:
>> - the .../ITK_bin/bin/Debug does not contain the expected folders/files:
>> ITKCommon, ITKBasicFilters, ITKAlgorithms, ITKNumerics, ITKFEM, ITKIO,
>> ITKStatistics, ITKMetalIO, itkpng, itkzlib.
>> - there is no Release folder in .../ITK_bin/bin/
>>
>> Each and every step is detailed and illustrated in the attached documents:
>>
>> 1. ITK_TOOLKIT_compilation_18112015.pdf (The end of this file contains a
>> snapshot of the folders mentioned by You above.)
>> 2. CMakeCache.txt
>> 3. VS 14 2015 output: VS_14_2015_OUTPUT_18112015.pdf
>>
>> I would welcome your insights. Many thanks in advance.
>>
>> --
>> Tunde
>>
>> On 18 November 2015 at 15:45, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>
>>> Since static libraries are built by default, ~/ITK_bin/bin/Debug/
>>> contains only 3 exe files on my machine (and no DLLs).
>>> However ~/ITK_bin/lib/Debug/ should contain a bunch of .lib files. If it is
>>> so, you have successfully built ITK in debug mode.
>>>
>>> Regarding that patch, you should not have to apply it, it should be
>>> included. What is the latest commit in the commit log of ITK? Mine is this:
>>>
>>> Revision: d248d5f52ad66b19346cab3e8336715a3a628980
>>> Author: Hyun Jae Kang <hyunjae.kang at kitware.com>
>>> Date: 2015-11-17 08:24:57
>>> Message:
>>> Merge topic 'warning-itkResourceProbe'
>>>
>>>
>>> 3d3b908f COMP: Fix data-conversion warning message on itkResourceProbe
>>> ----
>>> Modified: Modules/Core/Common/include/itkResourceProbe.h
>>> Modified: Modules/Core/Common/include/itkResourceProbe.hxx
>>> Modified: CMakeLists.txt
>>>
>>>
>>> On Wed, Nov 18, 2015 at 2:30 AM, T?nde Szil?gyi <
>>> a.tunde.szilagyi at gmail.com> wrote:
>>>
>>>> Thank you, I have made the new selection to VS 14 2015 Win64 generator
>>>> in CMake.
>>>>
>>>> However, the patch that solved the error messages is:
>>>>
>>>> http://review.source.kitware.com/#/c/20272/
>>>>
>>>> and NOT:
>>>>
>>>> http://review.source.kitware.com/#/c/20154/1
>>>>
>>>> I have now no errors during CMake configuration/generation step. The VS
>>>> 14 2015 build is successful with 335 succeeded, 0 failed, 0 updated.
>>>>
>>>> BUT the ~/ITK_bin/bin/Debug/  does not contain the expected
>>>> directories/files. By expected I mean the ones specified in the
>>>> ITK_Tutorial:
>>>>
>>>> ITKCommon
>>>> ITKBasicFilters
>>>> ITKAlgorithms
>>>> ITKNumerics
>>>> ITKFEM
>>>> ITKIO
>>>> ITKStatistics
>>>> ITKMetalIO
>>>> itkpng
>>>> itkzlib
>>>>
>>>> I have attached the CMakeCache.txt and the selection in the
>>>> configuration stage in CMake.
>>>>
>>>> Many thanks in advance.
>>>>
>>>>
>>>> On 18 November 2015 at 04:40, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>
>>>>> What I meant is that the choice of generator should include Win64 in
>>>>> its name, as shown in the attached screenshot. CMake executable is Win32,
>>>>> that does not matter. Also, I just built ITK in 32 bit mode without issues,
>>>>> so something else is amiss.
>>>>>
>>>>> Can you attach your CMakeCache.txt?
>>>>>
>>>>> On Tue, Nov 17, 2015 at 8:12 PM, T?nde Szil?gyi <
>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>
>>>>>> I have tried without the patch, but I am receiving the same error
>>>>>> message. My generator is VS 14 2015 (see CMake window on the LHS).
>>>>>>
>>>>>> Now, I have cleaned everything and started with a fresh installation:
>>>>>> - Git Bash
>>>>>> - CMake
>>>>>> - ITK master
>>>>>>
>>>>>> I realized that only Win32 CMake exists on the official website:
>>>>>> https://cmake.org/download/
>>>>>>
>>>>>> Is this what you refer to in your e-mail below? What else would you
>>>>>> recommend?
>>>>>>
>>>>>> Many thanks.
>>>>>>
>>>>>>
>>>>>> On 18 November 2015 at 01:34, D?enan Zuki? <dzenanz at gmail.com> wrote:
>>>>>>
>>>>>>> That patch was merged to master, so you don't need to apply it.
>>>>>>>
>>>>>>> I used VS2015 *Win64* as the generator. You seem to be using *Win32*,
>>>>>>> that might make a difference.
>>>>>>>
>>>>>>> I used version 3.3.1, which I installed some time ago. You are using
>>>>>>> release candidate version - I doubt that is the reason.
>>>>>>>
>>>>>>> Can you try a clean clone (git clone git://itk.org/ITK.git), and
>>>>>>> then building into a clean directory?
>>>>>>>
>>>>>>> On Tue, Nov 17, 2015 at 7:19 PM, T?nde Szil?gyi <
>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>
>>>>>>>> During CMake I am getting the attached error message. All the error
>>>>>>>> messages I receive is with reference to exe files starting with
>>>>>>>> cmTC_XXXXXX.exe. I have used the patch from Matt from September 1 to solve
>>>>>>>> this (http://review.source.kitware.com/#/c/20154/1 - Checkout),
>>>>>>>> but this still results in the same error messages as before. I have
>>>>>>>> attached one of the error messages that appear during CMake project
>>>>>>>> configuration.
>>>>>>>>
>>>>>>>> Many thanks.
>>>>>>>>
>>>>>>>> On 18 November 2015 at 00:41, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> Master branch from git://itk.org/ITK.git
>>>>>>>>>
>>>>>>>>> On Tue, Nov 17, 2015 at 6:34 PM, T?nde Szil?gyi <
>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>
>>>>>>>>>> Which ITK version did you use?
>>>>>>>>>>
>>>>>>>>>> On 18 November 2015 at 00:14, D?enan Zuki? <dzenanz at gmail.com>
>>>>>>>>>> wrote:
>>>>>>>>>>
>>>>>>>>>>> This configuration compiles fine in debug too.
>>>>>>>>>>>
>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:45 PM, D?enan Zuki? <dzenanz at gmail.com
>>>>>>>>>>> > wrote:
>>>>>>>>>>>
>>>>>>>>>>>> Hi T?nde,
>>>>>>>>>>>>
>>>>>>>>>>>> checking out *master* branch and CMake configuration went
>>>>>>>>>>>> fine. To speed up compile time, I disabled building of examples and
>>>>>>>>>>>> testing. I also enabled ITK_LEGACY_REMOVE. I did not enable
>>>>>>>>>>>> Module_ITKVtkGlue.
>>>>>>>>>>>>
>>>>>>>>>>>> Opening the solution file in VS2015 was fairly slow - it might
>>>>>>>>>>>> have something to do with the fact I just installed it. Building in Release
>>>>>>>>>>>> x64 finished without a problem: 212 succeeded, 0 failed, 3 skipped.
>>>>>>>>>>>>
>>>>>>>>>>>> Regards,
>>>>>>>>>>>> D?enan
>>>>>>>>>>>>
>>>>>>>>>>>> On Tue, Nov 17, 2015 at 5:14 AM, T?nde Szil?gyi <
>>>>>>>>>>>> a.tunde.szilagyi at gmail.com> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> Hi Everyone,
>>>>>>>>>>>>>
>>>>>>>>>>>>> I would be interested whether anyone has managed to build the
>>>>>>>>>>>>> ITK Toolkit on Windows 10 64 bit with Microsoft VS 14 2015?
>>>>>>>>>>>>>
>>>>>>>>>>>>> Many thanks.
>>>>>>>>>>>>> Tunde
>>>>>>>>>>>>>
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> Community mailing list
>>>>>>>>>>>>> Community at itk.org
>>>>>>>>>>>>> http://public.kitware.com/mailman/listinfo/community
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> --
>>>>>>>>>> Tunde
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> --
>>>>>>>> Tunde
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> --
>>>>>> Tunde
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> --
>>>> Tunde
>>>>
>>>
>>>
>>
>>
>> --
>> --
>> Tunde
>>
>
>


-- 
--
Tunde
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