[ITK] problem with installing SimpleITK with conda (mac)

Kayhan Batmanghelich batmanghelich at gmail.com
Thu May 28 16:31:02 EDT 2015


Hi all,

I recently tried to install SimpleITK on a mac using conda install and I
ran into the these problems.

I first tried to install using easy_install but I had some issue so I
removed it:

kayhan·587216330·05/28,16:15:17·~/anaconda
$ find . -name "SimpleITK"

Then I tried to install it using conda :

$ conda install -c https://conda.binstar.org/simpleitk SimpleITK
Fetching package metadata: ......
Solving package specifications: .
Package plan for installation in environment /Users/kayhan/anaconda:

The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    simpleitk-0.9.0            |           py27_0        30.4 MB

The following NEW packages will be INSTALLED:

    simpleitk: 0.9.0-py27_0

Proceed ([y]/n)? y

Fetching packages ...
simpleitk-0.9. 100%
|###################################################################|
Time: 0:00:04   6.56 MB/s
Extracting packages ...
[      COMPLETE
]|######################################################################################|
100%
Linking packages ...
[      COMPLETE
]|######################################################################################|
100%
kayhan·587216330·05/28,16:26:37·~
$ ipython
Python 2.7.9 |Anaconda 2.2.0 (x86_64)| (default, Dec 15 2014, 10:37:34)
Type "copyright", "credits" or "license" for more information.

IPython 3.1.0 -- An enhanced Interactive Python.
Anaconda is brought to you by Continuum Analytics.
Please check out: http://continuum.io/thanks and https://binstar.org
?         -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help      -> Python's own help system.
object?   -> Details about 'object', use 'object??' for extra details.

In [1]: import SimpleITK
---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
<ipython-input-1-f5d7554c860e> in <module>()
----> 1 import SimpleITK

/Users/kayhan/anaconda/lib/python2.7/site-packages/SimpleITK/__init__.py
in <module>()
----> 1 from .SimpleITK import *

/Users/kayhan/anaconda/lib/python2.7/site-packages/SimpleITK/SimpleITK.py
in <module>()
     26                 fp.close()
     27             return _mod
---> 28     _SimpleITK = swig_import_helper()
     29     del swig_import_helper
     30 else:

/Users/kayhan/anaconda/lib/python2.7/site-packages/SimpleITK/SimpleITK.py
in swig_import_helper()
     22         if fp is not None:
     23             try:
---> 24                 _mod = imp.load_module('_SimpleITK', fp,
pathname, description)
     25             finally:
     26                 fp.close()

ImportError: dlopen(/Users/kayhan/anaconda/lib/python2.7/site-packages/SimpleITK/_SimpleITK.so,
2): Library not loaded: @rpath/libpng15.15.dylib
  Referenced from:
/Users/kayhan/anaconda/lib/python2.7/site-packages/SimpleITK/_SimpleITK.so
  Reason: image not found

In [2]:

Any idea?

Thanks,
Kayhan
​
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