[ITK] [ITK-users] [ITK-dev] [ANN] ITK 4.9 Release Candidate 1 is ready for testing!
Simon Alexander
skalexander at gmail.com
Fri Dec 4 09:31:17 EST 2015
Hi all,
Apologies I haven't been able to put much time into this, ran into some
interesting challenges with VS2015 itself (at least in my configuration)
hanging permanently when changing from debug to release mode, or vice
versa. It seems the generated project files are a bit of a challenge for
it.
At any rate, I have narrowed down part of the issue at least to being not
in the interpolate filter itself, but rather in the test driver code ...
somewhere in the nested loops incrementing the underlying array elements is
behaving incorrectly in release mode. I'll try and have a closer look
this weekend.
On Tue, 1 Dec 2015 at 09:49 Lowekamp, Bradley (NIH/NLM/LHC) [C] <
blowekamp at mail.nih.gov> wrote:
> If you compile on window in Debug mode, those tests are known to take a
> long time and time out.
>
> The options are to increase the timeout ( CTEST_TEST_TIMEOUT ) and/or
> exclude the “RUNS_LONG” label from the tests run.
>
> Here is a ctest script which does this:
> https://open.cdash.org/viewNotes.php?buildid=4123585
>
> HTH,
> Brad
> ------------------------------
> *From:* Simon Alexander [skalexander at gmail.com]
> *Sent:* Tuesday, December 01, 2015 9:19 AM
> *To:* Matt McCormick; Dženan Zukić
> *Cc:* insight-users at itk.org; Hyun Jae Kang; ITK
> *Subject:* Re: [ITK-dev] [ITK-users] [ANN] ITK 4.9 Release Candidate 1 is
> ready for testing!
>
> Hi Matt,
>
> So I pulled origin/master and rebuilt last night. I have different
> failures now, all by timeout:
>
> *Total Test time (real) = 6363.39 sec*
>
> *The following tests FAILED:*
> * 726 - itkFastMarchingImageFilterTest_wm_multipleSeeds_NoTopo
> (Timeout)*
> * 727 - itkFastMarchingImageFilterTest_wm_multipleSeeds_StrictTopo
> (Timeout)*
> * 728 -
> itkFastMarchingImageFilterTest_wm_multipleSeeds_NoHandlesTopo (Timeout)*
> * 2025 - itkTimeVaryingBSplineVelocityFieldPointSetRegistrationTest
> (Timeout)*
> *Errors while running CTest*
>
>
> Any thoughts on what's going on there?
>
>
> On Mon, 30 Nov 2015 at 20:42 Matt McCormick <matt.mccormick at kitware.com>
> wrote:
>
>> Hi Simon,
>>
>> I am returning from holiday, and also catching up on activity.
>>
>>
>> Hyun Jae has taken care of the KWStyle warnings and the data conversion
>> warning:
>>
>> http://review.source.kitware.com/#/c/20430/
>> http://review.source.kitware.com/#/c/20446/
>>
>>
>> And Dzenan and Bill have addressed Wiki examples errors:
>>
>> https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
>>
>>
>> It is likely that the test failures on your build still remain. Did you
>> want to take them on?
>>
>> Thanks,
>> Matt
>>
>> On Mon, Nov 30, 2015 at 2:00 PM, Dženan Zukić <dzenanz at gmail.com> wrote:
>>
>>> Looking at the master branch is the right thing to do. I am not doing
>>> any active development regarding this right now.
>>>
>>> On Mon, Nov 30, 2015 at 1:53 PM, Simon Alexander <skalexander at gmail.com>
>>> wrote:
>>>
>>>> Hi All,
>>>>
>>>> I had hoped to be able to look at this over the weekend, but no such
>>>> luck. Is there somewhere useful I can help with it now? Not sure what
>>>> state we are in (or what branch).
>>>>
>>>> On Wed, 25 Nov 2015 at 16:41 Dženan Zukić <dzenanz at gmail.com> wrote:
>>>>
>>>>> It turns out that all the compile errors were occurring in
>>>>> WikiExamples. I solved all except one:
>>>>> ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
>>>>> file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
>>>>> 23, but it should be judging from the comment on that line.
>>>>>
>>>>> For the rest, I created a pull request:
>>>>> https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
>>>>>
>>>>> On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <
>>>>> skalexander at gmail.com> wrote:
>>>>>
>>>>>> Perfect. I'm under a deadline that is likely to eat the rest of the
>>>>>> week but if that clears up I'll try and jump in earlier.
>>>>>>
>>>>>> On Wed, 25 Nov 2015 at 16:06 Dženan Zukić <dzenanz at gmail.com> wrote:
>>>>>>
>>>>>>> OK I will work on it for an hour or two now, and I will make a
>>>>>>> branch and push it to Gerrit so whoever wants can pick up from there and
>>>>>>> keep updating it.
>>>>>>>
>>>>>>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <
>>>>>>> skalexander at gmail.com> wrote:
>>>>>>>
>>>>>>>> Makes sense. At this point I am unlikely to have time to look at
>>>>>>>> this until Saturday, but have hopes for a few free hours there.
>>>>>>>>
>>>>>>>> On Wed, 25 Nov 2015 at 15:58 Dženan Zukić <dzenanz at gmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>>> Building git master from Nov 23rd with examples and testing
>>>>>>>>> enabled I get 14 compile errors in VS2015 debug x64. Should we coordinate
>>>>>>>>> our efforts in fixing them?
>>>>>>>>>
>>>>>>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>>>>>>> skalexander at gmail.com> wrote:
>>>>>>>>>
>>>>>>>>>> Two of the three failures look like truncation issues (like
>>>>>>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> The other (
>>>>>>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>>>>>>> is less obvious.
>>>>>>>>>>
>>>>>>>>>> If I have time this evening I'll try and have a look at these.
>>>>>>>>>>
>>>>>>>>>> Is your standard test build in 32 bit ? That might explain the
>>>>>>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>>>>>>> why 2015 would trigger but not 2013.
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>>>>>>> matt.mccormick at kitware.com> wrote:
>>>>>>>>>>
>>>>>>>>>>> Ah, cool! Here:
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>>>>>>
>>>>>>>>>>> Could you please look into the test failures?
>>>>>>>>>>>
>>>>>>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>>>>>>
>>>>>>>>>>> Thanks,
>>>>>>>>>>> Matt
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>>>>>>> skalexander at gmail.com> wrote:
>>>>>>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday
>>>>>>>>>>> from SIMON-LAP,
>>>>>>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>>>>>>> one). VS2013
>>>>>>>>>>> > was green, three failures on VS2015 (and 18 warnings). Looks
>>>>>>>>>>> like a
>>>>>>>>>>> > truncation problem on the resuts.
>>>>>>>>>>> >
>>>>>>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>>>>> > wrote:
>>>>>>>>>>> >>
>>>>>>>>>>> >> Hi Simon,
>>>>>>>>>>> >>
>>>>>>>>>>> >> Thanks for testing.
>>>>>>>>>>> >>
>>>>>>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is
>>>>>>>>>>> green:
>>>>>>>>>>> >>
>>>>>>>>>>> >> https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>>>>>>> >>
>>>>>>>>>>> >> Are there any different flags? Could you please submit an
>>>>>>>>>>> Experimental
>>>>>>>>>>> >> build?
>>>>>>>>>>> >>
>>>>>>>>>>> >> ctest -j 4 -M Experimental -T Configure -T Build -T Test
>>>>>>>>>>> -T Submit -C
>>>>>>>>>>> >> Release
>>>>>>>>>>> >>
>>>>>>>>>>> >> from a fresh build tree.
>>>>>>>>>>> >>
>>>>>>>>>>> >> Thanks,
>>>>>>>>>>> >> Matt
>>>>>>>>>>> >>
>>>>>>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>>>>>>> skalexander at gmail.com>
>>>>>>>>>>> >> wrote:
>>>>>>>>>>> >> > Looks like a few problems with x64 build on visual studio
>>>>>>>>>>> 2015 - do you
>>>>>>>>>>> >> > have
>>>>>>>>>>> >> > a test machine in this configuration?
>>>>>>>>>>> >> >
>>>>>>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>>>>>>> matt.mccormick at kitware.com>
>>>>>>>>>>> >> > wrote:
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud
>>>>>>>>>>> to announce
>>>>>>>>>>> >> >> that
>>>>>>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is
>>>>>>>>>>> available for
>>>>>>>>>>> >> >> testing!
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Please take this opportunity to test the new features in
>>>>>>>>>>> the release
>>>>>>>>>>> >> >> candidate.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> To obtain the source code,
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> git clone http://itk.org/ITK.git
>>>>>>>>>>> >> >> cd ITK
>>>>>>>>>>> >> >> git checkout -q --detach v4.9rc01
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> A few selected highlights for this release:
>>>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>>>>>>> generation of
>>>>>>>>>>> >> >> meshes
>>>>>>>>>>> >> >> from binary segmentation images, and the
>>>>>>>>>>> AnisotropicDiffusionLBR module
>>>>>>>>>>> >> >> improved edge-preserving smoothing.
>>>>>>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>>>>>>> continuous
>>>>>>>>>>> >> >> integration testing on GitHub, and easily add Python
>>>>>>>>>>> wrapping for your
>>>>>>>>>>> >> >> C++
>>>>>>>>>>> >> >> algorithms.
>>>>>>>>>>> >> >> * Python wrapping, including Python 3, builds faster with
>>>>>>>>>>> a more
>>>>>>>>>>> >> >> standard
>>>>>>>>>>> >> >> installation
>>>>>>>>>>> >> >> * Improved performance of itk::Image::GetPixel and
>>>>>>>>>>> operations on
>>>>>>>>>>> >> >> itk::VariableLengthVector’s
>>>>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>>>>> private /
>>>>>>>>>>> >> >> compile /
>>>>>>>>>>> >> >> test
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Please test the release candidate and share your
>>>>>>>>>>> experiences on the
>>>>>>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The
>>>>>>>>>>> new module
>>>>>>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>>>>>>> dependencies for
>>>>>>>>>>> >> >> projects that use ITK COMPONENTS with the CMake
>>>>>>>>>>> find_package command.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> An Experimental build, which demonstrates how the test
>>>>>>>>>>> suite performs
>>>>>>>>>>> >> >> on
>>>>>>>>>>> >> >> your local build system, can be submitted to the dashboard
>>>>>>>>>>> [2] with:
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> mkdir ../ITK-build
>>>>>>>>>>> >> >> cd ../ITK-build
>>>>>>>>>>> >> >> cmake ../ITK
>>>>>>>>>>> >> >> ctest -j 4 -M Experimental -T Configure -T Build -T
>>>>>>>>>>> Test -T Submit
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Visual Studio builds must also add “-C Release” to the
>>>>>>>>>>> ctest command.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Notify the mailing list if there are any unexpected
>>>>>>>>>>> failures. Testing
>>>>>>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Congratulations and well done to the 35 contributors to
>>>>>>>>>>> this release.
>>>>>>>>>>> >> >> We
>>>>>>>>>>> >> >> would especially like to recognize the new contributors:
>>>>>>>>>>> Mikhail
>>>>>>>>>>> >> >> Isakov,
>>>>>>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias
>>>>>>>>>>> Wood, Seun
>>>>>>>>>>> >> >> Odutola,
>>>>>>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>>>>>>> Williamson,
>>>>>>>>>>> >> >> Luc
>>>>>>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> New Features
>>>>>>>>>>> >> >> ---------------------
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Wrapping improvements
>>>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> * Python 3 supported
>>>>>>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>>>>>>> >> >> * Wrapping is now installed into Python’s site-packages
>>>>>>>>>>> directory in
>>>>>>>>>>> >> >> the
>>>>>>>>>>> >> >> “itk” package
>>>>>>>>>>> >> >> * Wrapping package size is decreased
>>>>>>>>>>> >> >> * Better package portability on Mac OSX
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> New Remote Modules
>>>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> * Cuberille
>>>>>>>>>>> >> >> * Insight Journal Article:
>>>>>>>>>>> http://hdl.handle.net/10380/3186
>>>>>>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>>>>>>> >> >> * Insight Journal Article:
>>>>>>>>>>> http://hdl.handle.net/10380/3505
>>>>>>>>>>> >> >> * Web browser reproducibility:
>>>>>>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Core Improvements
>>>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>>>>>>> source tree
>>>>>>>>>>> >> >> and
>>>>>>>>>>> >> >> on GitHub
>>>>>>>>>>> >> >> * Details: http://www.kitware.com/blog/home/post/997
>>>>>>>>>>> >> >> * New utilities in itk::Math:
>>>>>>>>>>> >> >> * AlmostEquals
>>>>>>>>>>> >> >> * NotAlmostEquals
>>>>>>>>>>> >> >> * ExactlyEquals
>>>>>>>>>>> >> >> * NotExactlyEquals
>>>>>>>>>>> >> >> * New itk::NumericTraits
>>>>>>>>>>> >> >> * IsInteger
>>>>>>>>>>> >> >> * IsSigned
>>>>>>>>>>> >> >> * Improved C++11 support
>>>>>>>>>>> >> >> * New ITK_DELETE_FUNCTION macro for “=delete”
>>>>>>>>>>> >> >> * New ITK_NOEXCEPT macro for the “noexcept” keyword
>>>>>>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>>>>>>> >> >> * Improve numerical stability in VNL eigen system
>>>>>>>>>>> estimation
>>>>>>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use
>>>>>>>>>>> std::)
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Filtering Improvements
>>>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>>>>>>> >> >> * WarpImageFilter support VectorImage’s
>>>>>>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the
>>>>>>>>>>> ITKPath module
>>>>>>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>>>>>>> ITKImageFilterBase
>>>>>>>>>>> >> >> module
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Registration Improvements
>>>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Build Improvements
>>>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> * Module dependencies can now be specified as public /
>>>>>>>>>>> private /
>>>>>>>>>>> >> >> compile /
>>>>>>>>>>> >> >> test
>>>>>>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>>>>>>> >> >> * Details: http://www.kitware.com/blog/home/post/939
>>>>>>>>>>> >> >> * Expat third party library is now name mangled
>>>>>>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>>>>>>> >> >> * KWStyle is automatically built and configured when tests
>>>>>>>>>>> are built
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Performance Improvements
>>>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds
>>>>>>>>>>> members for
>>>>>>>>>>> >> >> metaprogramming
>>>>>>>>>>> >> >> * itk::mpl::{TrueType,FalseType}
>>>>>>>>>>> >> >> * itk::mpl::{If,Not,And,Or,Xor}
>>>>>>>>>>> >> >> * itk::mpl::EnableIf
>>>>>>>>>>> >> >> * itk::mpl::IsBaseOf
>>>>>>>>>>> >> >> * itk::mpl::IsConvertible
>>>>>>>>>>> >> >> * itk::mpl::IsNumber
>>>>>>>>>>> >> >> * itk::mpl::IsSame
>>>>>>>>>>> >> >> * itk::mpl::PromoteType
>>>>>>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Documentation Improvements
>>>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>>>>>>> Examples
>>>>>>>>>>> >> >> * ITK Software Guide improvements
>>>>>>>>>>> >> >> * How to use Python wrapping
>>>>>>>>>>> >> >> * How to create an ITK module
>>>>>>>>>>> >> >> * Improvements to segmentation examples
>>>>>>>>>>> >> >> * Expanded Canny edge detection example
>>>>>>>>>>> >> >> * Expanded tree container example
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Third Party Library Updates
>>>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> * FFTW updated to latest upstream
>>>>>>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>>>>>>> >> >> * Build with the latest VTK
>>>>>>>>>>> >> >> * PNG update to the latest upstream
>>>>>>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>>>>>>> >> >> * MINC updated to the latest upstream
>>>>>>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Style improvements -- ITK gets more stylish with every
>>>>>>>>>>> release!
>>>>>>>>>>> >> >>
>>>>>>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> * Private copy constructors and operator= use
>>>>>>>>>>> ITK_DELETE_FUNCTION
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> * *Lots* of important bug fixes
>>>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> * And much more! See details in the log below.
>>>>>>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>>>>>>> >> >> --------------------------------------------
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Abhishek Tiwari (1):
>>>>>>>>>>> >> >> BUG: "tmpImageIndex" not initialized to 0.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Adam Snyder (1):
>>>>>>>>>>> >> >> PERF: Reworked MMI Threading using a per-thread buffer
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Alexander Leinoff (6):
>>>>>>>>>>> >> >> ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>>>>>>> >> >> COMP: Doxygen itkMath.h 'OneValue()' could not be
>>>>>>>>>>> resolved.
>>>>>>>>>>> >> >> ENH: Adds ExactlyEquals and NotExactlyEquals
>>>>>>>>>>> functions to
>>>>>>>>>>> >> >> itkMath.h
>>>>>>>>>>> >> >> COMP: Removes floating-point equality checks
>>>>>>>>>>> >> >> ENH: COMP: Adds support for complex values to
>>>>>>>>>>> Math::AlmostEquals
>>>>>>>>>>> >> >> ENH: Updates fftw dependency
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Arnaud Gelas (5):
>>>>>>>>>>> >> >> COMP: fix warning (unused local typedef)
>>>>>>>>>>> >> >> COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>>>>>>> >> >> DOC: add doxgen documentation for
>>>>>>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>>>>>>> >> >> ENH: add tests to exercise
>>>>>>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>>>>>>> >> >> COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Betsy McPhail (1):
>>>>>>>>>>> >> >> BUG: Improve buffer alignment in OctreeNode .
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Bill Hoffman (2):
>>>>>>>>>>> >> >> ENH: Use new CMake Windows export symbol dll feature.
>>>>>>>>>>> >> >> COMP: Put vnl_export.h in the list of sources so it
>>>>>>>>>>> gets
>>>>>>>>>>> >> >> installed.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Bill Lorensen (4):
>>>>>>>>>>> >> >> COMP: VTkGlue linker errors
>>>>>>>>>>> >> >> BUG: Inappropriate use of AlmostEquals
>>>>>>>>>>> >> >> ENH: Bump tag for wiki examples
>>>>>>>>>>> >> >> ENH: Better layout strategy
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Brad King (3):
>>>>>>>>>>> >> >> ENH: Remove use of include <itksys/ios/*> and
>>>>>>>>>>> itksys_ios::*
>>>>>>>>>>> >> >> ENH: Remove use of include <itksys/stl/*> and
>>>>>>>>>>> itksys_stl::*
>>>>>>>>>>> >> >> ENH: Update CMake Policy settings in
>>>>>>>>>>> Testing/TestExternal project
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Bradley Lowekamp (31):
>>>>>>>>>>> >> >> BUG: Avoid null deference in PrintSelf with default
>>>>>>>>>>> construction
>>>>>>>>>>> >> >> ENH: Enable base classes for templates of landmark
>>>>>>>>>>> initializer
>>>>>>>>>>> >> >> STYLE: Use "Swap" for ITK member name
>>>>>>>>>>> >> >> BUG: Demonstrate Eigen analysis failure
>>>>>>>>>>> >> >> BUG: Fix computation of Eigen analysis
>>>>>>>>>>> >> >> ENH: Update DiscreteHessianGaussian Test baseline
>>>>>>>>>>> >> >> ENH: Correctly demonstrate float point Eigen failure
>>>>>>>>>>> >> >> ENH: compile vnl_math_hypot, and use at least double
>>>>>>>>>>> >> >> ENH: Adding initial update script from used libpng
>>>>>>>>>>> version.
>>>>>>>>>>> >> >> ENH: removing non-subtree files for itkpng
>>>>>>>>>>> >> >> ENH: Ported ITK changes for building to subtree
>>>>>>>>>>> merged code
>>>>>>>>>>> >> >> ENH: Update libpng update script for v1.6.9
>>>>>>>>>>> >> >> BUG: Use ParameterValueType for computation of
>>>>>>>>>>> landmark affine
>>>>>>>>>>> >> >> ENH: Wrap LandmarkBasedTransformInitializer
>>>>>>>>>>> >> >> BUG: Avoid potential exception in
>>>>>>>>>>> itk::Object::UnRegister
>>>>>>>>>>> >> >> ENH: Update itkpng zlib, configuration, and rename
>>>>>>>>>>> >> >> ENH: Update itkpng name mangling
>>>>>>>>>>> >> >> BUG: Use const pointer in Set method for constant
>>>>>>>>>>> ReferenceImage
>>>>>>>>>>> >> >> ivar
>>>>>>>>>>> >> >> BUG: Increase tolerance for
>>>>>>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>>>>>>> >> >> BUG: Demonstrate side effect on registration due to
>>>>>>>>>>> BSplineScatter
>>>>>>>>>>> >> >> change
>>>>>>>>>>> >> >> ENH: Move MovingHistogramImageFilter base classes to
>>>>>>>>>>> >> >> ImageFilterBase
>>>>>>>>>>> >> >> BUG: Avoid potential exception in
>>>>>>>>>>> itk::Object::UnRegister
>>>>>>>>>>> >> >> BUG: Avoid null deference in PrintSelf with default
>>>>>>>>>>> construction
>>>>>>>>>>> >> >> BUG: Use const pointer in Set method for constant
>>>>>>>>>>> ReferenceImage
>>>>>>>>>>> >> >> ivar
>>>>>>>>>>> >> >> ENH: Optimize AdaptiveHistogramEqualization with
>>>>>>>>>>> MovingHistogram
>>>>>>>>>>> >> >> base
>>>>>>>>>>> >> >> COMP: address sign unsigned comparison warning
>>>>>>>>>>> >> >> COMP: Address signed unsigned comparison warning
>>>>>>>>>>> >> >> COMP: Address unused member variable and methods in
>>>>>>>>>>> anonymous ns
>>>>>>>>>>> >> >> BUG: Fix segfault when with empty IsolatedWatershed
>>>>>>>>>>> Threshold
>>>>>>>>>>> >> >> range
>>>>>>>>>>> >> >> BUG: Adjust intensity tolerance for
>>>>>>>>>>> PhysicsBasedNonRigid test
>>>>>>>>>>> >> >> BUG: Reduce number of targets with MSVC
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Davis Vigneault (7):
>>>>>>>>>>> >> >> DOC: Minor improvements to segmentation examples.
>>>>>>>>>>> >> >> DOC: Expanded Canny Edge Detection Example
>>>>>>>>>>> >> >> DOC: Expanded TreeContainer Example
>>>>>>>>>>> >> >> COMP: Warnings in itkVTKImageExport when compiling
>>>>>>>>>>> with c++11
>>>>>>>>>>> >> >> COMP: Warnings in FFTW Classes when compiling with
>>>>>>>>>>> c++11
>>>>>>>>>>> >> >> COMP: Update Git Tag for Subdivision Module
>>>>>>>>>>> >> >> COMP: Warnings in FFTW Classes when compiling with
>>>>>>>>>>> c++11
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Dženan Zukić (1):
>>>>>>>>>>> >> >> STYLE: better formatting of the "usage" message
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Eugene Prilepin (1):
>>>>>>>>>>> >> >> BUG: Fix a template name formation in python wrappings
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Floris Berendsen (1):
>>>>>>>>>>> >> >> STYLE: Improve naming conventions in comments.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Hans Johnson (29):
>>>>>>>>>>> >> >> STYLE: Instrument for FixedParameters typedef
>>>>>>>>>>> >> >> BUG: Demonstrate DisplacementTransformFailure
>>>>>>>>>>> >> >> BUG: FixedParameters should be double precision
>>>>>>>>>>> >> >> STYLE: Minor code style issues for MGHIO
>>>>>>>>>>> >> >> COMP: Update to version for WikiExamples
>>>>>>>>>>> >> >> ENH: Update Sphinx for ITK 4.8.0
>>>>>>>>>>> >> >> ENH: Update MGHIO to be shared lib
>>>>>>>>>>> >> >> ENH: Provide consistent floating point comparisons
>>>>>>>>>>> >> >> BUG: Fix MGHIO to fix write failures
>>>>>>>>>>> >> >> PERF: Remove floating point as sentinal value
>>>>>>>>>>> >> >> COMP: Const correctness needs to be maintained
>>>>>>>>>>> >> >> BUG: Preserve backwards compatibility
>>>>>>>>>>> >> >> DOC: Provide consistent naming in comments
>>>>>>>>>>> >> >> ENH: Conversion between transform type tolerance
>>>>>>>>>>> >> >> STYLE: Prefer initialization to assignment
>>>>>>>>>>> >> >> ENH: Missing ITK_OVERRIDE
>>>>>>>>>>> >> >> COMP: Need to propagate ITKGDCM
>>>>>>>>>>> >> >> COMP: Need to propagate ITKGDCM
>>>>>>>>>>> >> >> COMP: Add missing ITK_OVERRIDE
>>>>>>>>>>> >> >> STYLE: Minor code style issues for MGHIO
>>>>>>>>>>> >> >> COMP: Update to version for WikiExamples
>>>>>>>>>>> >> >> ENH: Update Sphinx for ITK 4.8.0
>>>>>>>>>>> >> >> ENH: Update MGHIO to be shared lib
>>>>>>>>>>> >> >> BUG: Fix MGHIO to fix write failures
>>>>>>>>>>> >> >> ENH: C++11 allows for rigorous =delete
>>>>>>>>>>> >> >> COMP: Remove unnecessary failing assert test
>>>>>>>>>>> >> >> ENH: Ignore internal files for the Clion editor
>>>>>>>>>>> >> >> COMP: Fix VNL compilation for wider C++11 support
>>>>>>>>>>> >> >> BUG: In configuration test need to mirror code
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Hyun Jae Kang (27):
>>>>>>>>>>> >> >> BUG: Remove std::cout calls from class
>>>>>>>>>>> >> >> BUG: Avoid an unexpected output of static_cast
>>>>>>>>>>> >> >> BUG: Update python example codes for ImageRegistration
>>>>>>>>>>> >> >> BUG: Retrieve the missed wrap file
>>>>>>>>>>> >> >> BUG: itkVTKImageIO class does not handle blank lines
>>>>>>>>>>> in VTK file
>>>>>>>>>>> >> >> header.
>>>>>>>>>>> >> >> BUG: Fix HDF5 CMake configuration with VS2015
>>>>>>>>>>> >> >> BUG: Fix a compilation issue on ITK4 with FFTW and
>>>>>>>>>>> shared
>>>>>>>>>>> >> >> libraries
>>>>>>>>>>> >> >> BUG: Fixed older XCode linking error
>>>>>>>>>>> >> >> ENH: Use CastXML binaries when building with x86_64
>>>>>>>>>>> Mac OS X
>>>>>>>>>>> >> >> BUG: Remove std::cout calls from class
>>>>>>>>>>> >> >> BUG: itkVTKImageIO class does not handle blank lines
>>>>>>>>>>> in VTK file
>>>>>>>>>>> >> >> header.
>>>>>>>>>>> >> >> BUG: Fixed older XCode linking error
>>>>>>>>>>> >> >> ENH: Add automatic KWStyle build and configuration
>>>>>>>>>>> setup
>>>>>>>>>>> >> >> COMP: KWStyle shadow, format-nonliteral and
>>>>>>>>>>> autological-compare
>>>>>>>>>>> >> >> warning.
>>>>>>>>>>> >> >> COMP: Fixed the warning messages from itkGPU Module
>>>>>>>>>>> >> >> COMP: Fixed a warning message of unused-private-field
>>>>>>>>>>> >> >> COMP: Apply latest version of KWStyle
>>>>>>>>>>> >> >> COMP: Update KWStyle to fix its additional warning
>>>>>>>>>>> messages
>>>>>>>>>>> >> >> COMP: Update KWStyle to fix its additional warning
>>>>>>>>>>> messages
>>>>>>>>>>> >> >> COMP: Fix data-conversion warning messages on Windows
>>>>>>>>>>> >> >> ENH: Update itkResourceProbe to calculate statistical
>>>>>>>>>>> data
>>>>>>>>>>> >> >> COMP: Fix data-conversion warning messages on VS14
>>>>>>>>>>> >> >> COMP: Fixed 'std::sqrt' : ambiguous call to
>>>>>>>>>>> overloaded function
>>>>>>>>>>> >> >> ENH: Update the Report() function of
>>>>>>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>>>>>>> >> >> COMP: Fix data-conversion warning message on
>>>>>>>>>>> itkResourceProbe
>>>>>>>>>>> >> >> COMP: Fix additional warning messages of KWStyle
>>>>>>>>>>> >> >> COMP: Fix data-conversion warning messages
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>>>>>>> >> >> ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>>>>>>> >> >> BUG: Fix compilation issues for
>>>>>>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>>>>>>> >> >> BUG: Fix comparison issues for
>>>>>>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>>>>>>> >> >> BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>>>>>>> >> >> ENH: Add test for
>>>>>>>>>>> itkParametricStpaceToImageSpaceFilter
>>>>>>>>>>> >> >> ENH: Improve code coverage for
>>>>>>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Julien Michel (1):
>>>>>>>>>>> >> >> ENH: Support of VectorImage as template parameters for
>>>>>>>>>>> >> >> WarpImageFilter
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Junjie Bai (2):
>>>>>>>>>>> >> >> BUG: ConvertLabelMap with different LabelMapTypes
>>>>>>>>>>> >> >> BUG: LabelObject CopyAttribute support different
>>>>>>>>>>> LabelObject type
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> KWSys Robot (4):
>>>>>>>>>>> >> >> KWSys 2015-07-10 (c9336bcf)
>>>>>>>>>>> >> >> KWSys 2015-07-30 (f63febb7)
>>>>>>>>>>> >> >> KWSys 2015-08-24 (cdaf522c)
>>>>>>>>>>> >> >> KWSys 2015-08-28 (dc3fdd7f)
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> LIBPNG Upstream (2):
>>>>>>>>>>> >> >> PNG 2009-04-06 (e68f5a36)
>>>>>>>>>>> >> >> PNG 2014-02-05 (3e753eb8)
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Laurentiu Nicola (2):
>>>>>>>>>>> >> >> PERF: Avoid temporary smartptr in
>>>>>>>>>>> ProcessObject::GetInput
>>>>>>>>>>> >> >> PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>>>>>>> bouncing
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Luc Hermitte (8):
>>>>>>>>>>> >> >> PERF: itk::Image::GetPixel() performance improvment.
>>>>>>>>>>> >> >> PERF: Performance enhancements on
>>>>>>>>>>> VariableLengthVectors 1/...
>>>>>>>>>>> >> >> ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>>>>>>> >> >> BUG: Error in VariableLengthVector Unit Tests
>>>>>>>>>>> >> >> PERF: Performance enhancements on VLV 2/...
>>>>>>>>>>> >> >> PERF: Performances enhancements on VLV 3/...
>>>>>>>>>>> >> >> COMP: Fix signed/unsigned warnings
>>>>>>>>>>> >> >> BUG: std::copy/fill on empty VLV
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Lucas Gandel (4):
>>>>>>>>>>> >> >> ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>>>>>>> module.
>>>>>>>>>>> >> >> BUG: Fixing ImageToPathFilter wrapping call from
>>>>>>>>>>> Review Module
>>>>>>>>>>> >> >> STYLE: Fix KWStyle dashboard errors
>>>>>>>>>>> >> >> BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Mathieu Malaterre (1):
>>>>>>>>>>> >> >> BUG: Name mangle the included expat third party
>>>>>>>>>>> library.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Matthew McCormick (94):
>>>>>>>>>>> >> >> ENH: Change itkSystemInformationTest to
>>>>>>>>>>> itkCMakeConfigurationTest.
>>>>>>>>>>> >> >> ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>>>>>>> >> >> ENH: Bump ITK version to 4.9.0.
>>>>>>>>>>> >> >> BUG: Remove std::cout calls from classes.
>>>>>>>>>>> >> >> COMP: Remove unused argument in
>>>>>>>>>>> ConditionVariableNoThreads.
>>>>>>>>>>> >> >> BUG: Implement UpdateLargestPossibleRegion for
>>>>>>>>>>> >> >> ImageToVTKImageFilter.
>>>>>>>>>>> >> >> COMP: Add link interface specification for wrapping
>>>>>>>>>>> >> >> target_link_libraries.
>>>>>>>>>>> >> >> STYLE: Fix indentation in
>>>>>>>>>>> itkMINCTransformIOFactory.cxx.
>>>>>>>>>>> >> >> COMP: Fix MINCTransformIO factory registration.
>>>>>>>>>>> >> >> COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with
>>>>>>>>>>> Emscripten-1.
>>>>>>>>>>> >> >> COMP: Remove unknown doxygen command in
>>>>>>>>>>> AnisotropicDiffusionLBR.
>>>>>>>>>>> >> >> BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>>>>>>> >> >> ENH: Use CastXML binaries when building with x86_64
>>>>>>>>>>> Linux.
>>>>>>>>>>> >> >> STYLE: Rename gccxml -> castxml in
>>>>>>>>>>> {idx,igenerator}.py.
>>>>>>>>>>> >> >> COMP: Disable the gold linker for static builds on
>>>>>>>>>>> Ubuntu 14.04.
>>>>>>>>>>> >> >> ENH: Use Windows binaries for CastXML.
>>>>>>>>>>> >> >> ENH: Add better scoping in igenerator.py.
>>>>>>>>>>> >> >> BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja +
>>>>>>>>>>> MSVC.
>>>>>>>>>>> >> >> BUG: LevelSetsv4 used signed char instead of char.
>>>>>>>>>>> >> >> ENH: Add better scoping to idx.py.
>>>>>>>>>>> >> >> COMP: Define newSize and oldSize in
>>>>>>>>>>> VariableLengthVector.
>>>>>>>>>>> >> >> STYLE: Use prefix increment operator in ImageBase.
>>>>>>>>>>> >> >> DOC: Correct spelling of Continuous.
>>>>>>>>>>> >> >> ENH: Add more progress information to
>>>>>>>>>>> IterativeClosestPoint2.
>>>>>>>>>>> >> >> BUG: Build BridgeNumPy with Visual Studio.
>>>>>>>>>>> >> >> ENH: Add ITKModuleExternal.cmake
>>>>>>>>>>> >> >> COMP: Wrap Image< bool, D > for
>>>>>>>>>>> FlatStructuringElement.
>>>>>>>>>>> >> >> BUG: Use CastXML binary built in Release.
>>>>>>>>>>> >> >> BUG: ContinuousIndex should not be templated over
>>>>>>>>>>> TCoordRep.
>>>>>>>>>>> >> >> COMP: Set CMP0054 to new.
>>>>>>>>>>> >> >> COMP: Address line length too long for Software Guide.
>>>>>>>>>>> >> >> COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>>>>>>> >> >> BUG: Support Python 3 wrapping module initialization.
>>>>>>>>>>> >> >> BUG: Update itkTemplate.py for Python 3.
>>>>>>>>>>> >> >> BUG: Update itkExtras.py for Python 3.
>>>>>>>>>>> >> >> BUG: Prevent Python callback addition recursion.
>>>>>>>>>>> >> >> BUG: Fix test scripts for Python 3.
>>>>>>>>>>> >> >> BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>>>>> >> >> ENH: Allow projects to build against an external
>>>>>>>>>>> module.
>>>>>>>>>>> >> >> ENH: Replace CABLE_CONFIGURATION with
>>>>>>>>>>> ITK_WRAPPING_PARSER.
>>>>>>>>>>> >> >> ENH: Rename _cable_ to _wrappers_.
>>>>>>>>>>> >> >> BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>>>>>>> >> >> BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>>>>>>> >> >> COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>>>>>>> >> >> ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>>>>>>> >> >> BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>>>>>>> >> >> ENH: Bump CastXML version to 2015-30-29.
>>>>>>>>>>> >> >> ENH: Bump LLVM / Clang to 3.7.0.
>>>>>>>>>>> >> >> COMP: Avoid itklibminc linking with
>>>>>>>>>>> ITK_USE_SYSTEM_HDF5.
>>>>>>>>>>> >> >> COMP: Add missing ITKIOImageBase dependency for
>>>>>>>>>>> ITKTransformMINC.
>>>>>>>>>>> >> >> COMP: Use itkSimpleNewMacro in
>>>>>>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>>>>>>> >> >> ENH: Add wrapping support for building modules
>>>>>>>>>>> externally.
>>>>>>>>>>> >> >> BUG: Fix KWStyle test paths when building a module
>>>>>>>>>>> externally.
>>>>>>>>>>> >> >> ENH: Add Cuberille Remote module.
>>>>>>>>>>> >> >> COMP: Remove carriage returns from Cuberille remote.
>>>>>>>>>>> >> >> COMP: Remove unused argument in
>>>>>>>>>>> ConditionVariableNoThreads.
>>>>>>>>>>> >> >> DOC: Correct spelling of Continuous.
>>>>>>>>>>> >> >> ENH: Bump the MinimalPathExtraction Remote to
>>>>>>>>>>> 2015-10-20.
>>>>>>>>>>> >> >> COMP: Fix KernelTransform SetFixedParameters argument
>>>>>>>>>>> type.
>>>>>>>>>>> >> >> STYLE: Use prefix increment operator in ImageBase.
>>>>>>>>>>> >> >> COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>>>>> sys.path
>>>>>>>>>>> >> >> Revert "COMP: Put vnl_export.h in the list of sources
>>>>>>>>>>> so it gets
>>>>>>>>>>> >> >> installed."
>>>>>>>>>>> >> >> BUG: Revert "BUG: ConvertLabelMap with different
>>>>>>>>>>> LabelMapTypes"
>>>>>>>>>>> >> >> ENH: Marking wrapping CMake configuration variables
>>>>>>>>>>> as advanced.
>>>>>>>>>>> >> >> STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>>>>>>> >> >> COMP: Non-virtual copy attribute members in LabelMap
>>>>>>>>>>> cannot have
>>>>>>>>>>> >> >> override.
>>>>>>>>>>> >> >> COMP: Add wrapping for
>>>>>>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>>>>>>> >> >> COMP: Add itkMacro.h to itkPromoteType.h for
>>>>>>>>>>> ITK_EXCEPT.
>>>>>>>>>>> >> >> ENH: Remove CMake version check in
>>>>>>>>>>> ITKModuleHeaderTest.cmake
>>>>>>>>>>> >> >> BUG: Improve KWStyle ExternalProject utilization.
>>>>>>>>>>> >> >> ENH: Remove old KWStyle build script.
>>>>>>>>>>> >> >> COMP: Address VariableLengthVector Doxygen rhs @param
>>>>>>>>>>> not found.
>>>>>>>>>>> >> >> ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>>>>>>> >> >> ENH: Install Python bindings into site-packages.
>>>>>>>>>>> >> >> ENH: Improve readability of Python site-packages path
>>>>>>>>>>> detection.
>>>>>>>>>>> >> >> COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>>>>>>> expression
>>>>>>>>>>> >> >> warning.
>>>>>>>>>>> >> >> BUG: ITKCommon publically depends on
>>>>>>>>>>> ITKDoubleConversion.
>>>>>>>>>>> >> >> COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>>>>>>> >> >> ENH: Improves names and export of module dependencies.
>>>>>>>>>>> >> >> STYLE: Improve namespace bracket style in
>>>>>>>>>>> itkIsConvertible.
>>>>>>>>>>> >> >> COMP: Set CMP0054 to new.
>>>>>>>>>>> >> >> BUG: Remove unused wrapping files.
>>>>>>>>>>> >> >> BUG: Do install install wrapping development files.
>>>>>>>>>>> >> >> ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>>>>>>> >> >> BUG: Remove duplicate inclusion of wrapping
>>>>>>>>>>> submodules.
>>>>>>>>>>> >> >> COMP: Do not use C++ style comments for Doxygen cond.
>>>>>>>>>>> >> >> BUG: Fix detection of the gold linker.
>>>>>>>>>>> >> >> BUG: Update Python package installation locations.
>>>>>>>>>>> >> >> ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>>>>>>> >> >> ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>>>>>>> >> >> BUG: Use 'from itk import ITKCommon' in module2module
>>>>>>>>>>> test.
>>>>>>>>>>> >> >> COMP: Link to VTK Python when built with Kits support.
>>>>>>>>>>> >> >> BUG: Install itk_minc2.h header.
>>>>>>>>>>> >> >> COMP: ITKIOMINC has a public dependency on
>>>>>>>>>>> ITKIOImageBase.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Michka Popoff (9):
>>>>>>>>>>> >> >> ENH: Update to swig 3.0.7
>>>>>>>>>>> >> >> ENH: Do not link against specific Python library on
>>>>>>>>>>> OS X
>>>>>>>>>>> >> >> COMP: Fix wrapping warnings when building with
>>>>>>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>>>>>>> >> >> COMP: Add missing wrapping for TransformBase
>>>>>>>>>>> >> >> COMP: Use ITK's pygccxml by correctly setting up the
>>>>>>>>>>> sys.path
>>>>>>>>>>> >> >> COMP: Disable incompatible modules when using Python
>>>>>>>>>>> 3 wrapping
>>>>>>>>>>> >> >> COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>>>>>>> >> >> ImageFilterBase
>>>>>>>>>>> >> >> module
>>>>>>>>>>> >> >> COMP: Disable incompatible modules when using Python
>>>>>>>>>>> 3 wrapping
>>>>>>>>>>> >> >> ENH: Allow operations on Indexes and Offsets in Python
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Mikhail Isakov (1):
>>>>>>>>>>> >> >> BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>>>>>>> baseline image
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Nick Tustison (5):
>>>>>>>>>>> >> >> BUG: Set a default b-spline epsilon.
>>>>>>>>>>> >> >> ENH: Adding testing for closed loop.
>>>>>>>>>>> >> >> BUG: Updating B-spline classes with the same epsilon
>>>>>>>>>>> strategy.
>>>>>>>>>>> >> >> PERF: Switch vnl_vectors for fixed arrays.
>>>>>>>>>>> >> >> ENH: Point-set registration with time-varying
>>>>>>>>>>> B-spline.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Olivier Commowick (3):
>>>>>>>>>>> >> >> BUG: Correct discrepancy in tridiagonal reduction wrt
>>>>>>>>>>> VNL eigen
>>>>>>>>>>> >> >> system
>>>>>>>>>>> >> >> BUG: Correct under/overflows in vnl_math_hypot (taken
>>>>>>>>>>> from pythag
>>>>>>>>>>> >> >> from V3P)
>>>>>>>>>>> >> >> BUG: Switch eigenvalues computation to double
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>>>>>>> >> >> ENH: Help class for itkFlatStructuringElement with
>>>>>>>>>>> constructor
>>>>>>>>>>> >> >> from
>>>>>>>>>>> >> >> images.
>>>>>>>>>>> >> >> COMP: Fix test errors and warnings in
>>>>>>>>>>> FlatStructuringElement.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Seun Odutola (1):
>>>>>>>>>>> >> >> COMP: Fixed name clash with Apple header (check
>>>>>>>>>>> Macro), renamed
>>>>>>>>>>> >> >> check
>>>>>>>>>>> >> >> to Check
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Shawn Waldon (1):
>>>>>>>>>>> >> >> COMP: Set target OS X version in environment for
>>>>>>>>>>> tools using
>>>>>>>>>>> >> >> compiler
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Simon Alexander (1):
>>>>>>>>>>> >> >> BUG: incorrect closest point computation
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Tobias Wood (2):
>>>>>>>>>>> >> >> BUG: LBFGSB was printing messages even with debug
>>>>>>>>>>> switched off.
>>>>>>>>>>> >> >> BUG: Removed an unguarded print statement.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>>>>>>> >> >> BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>>>>>>> >> >> COMP: Changing the order of HDF5 library components
>>>>>>>>>>> >> >> COMP: Splitting up IOMINC module into two parts: MINC
>>>>>>>>>>> and
>>>>>>>>>>> >> >> Transform
>>>>>>>>>>> >> >> STYLE: updated comments to properly reference LIBMINC
>>>>>>>>>>> >> >> ENH: Add script to merge upstream MINC as a subtree
>>>>>>>>>>> >> >> MINC 2015-07-23 (c033d431)
>>>>>>>>>>> >> >> COMP: Update MINC CMake code
>>>>>>>>>>> >> >> MINC 2015-08-18 (6d7e3ba8)
>>>>>>>>>>> >> >> MINC 2015-09-13 (95cd5374)
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>>>>>>> >> >> DOC: update email address for xiaoxiao.
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Zach Williamson (10):
>>>>>>>>>>> >> >> BUG: Use correct libraries for ImageFusion tests
>>>>>>>>>>> >> >> ENH: Consolidate Library Dependencies
>>>>>>>>>>> >> >> COMP: Add a missing link to Review module
>>>>>>>>>>> >> >> COMP: Use correct linking macro in DCMTK
>>>>>>>>>>> >> >> BUG: Use correct libraries for TestKernel tests
>>>>>>>>>>> >> >> COMP: Fix inconsistant naming of
>>>>>>>>>>> GPUPDEDeformableRegistration
>>>>>>>>>>> >> >> ENH: Use new linking system macros
>>>>>>>>>>> >> >> PERF: Avoid searching private dependencies for
>>>>>>>>>>> include directories
>>>>>>>>>>> >> >> COMP: Recover missing dependencies
>>>>>>>>>>> >> >> ENH: use new linking macros in Filtering module
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> -----------------------------------------------------
>>>>>>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >>
>>>>>>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>>>>>>> >> >> _____________________________________
>>>>>>>>>>> >> >> Powered by www.kitware.com
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Kitware offers ITK Training Courses, for more information
>>>>>>>>>>> visit:
>>>>>>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>>>> >> >>
>>>>>>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> _______________________________________________
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> Powered by www.kitware.com
>>>>>>>>>>
>>>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>>>
>>>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>>>>
>>>>>>>>> http://kitware.com/products/protraining.php
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>>>
>>>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>>>>
>>>>>>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>
>>>>>
>>>
>>
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