[ITK] [ITK-users] SimpleITK FFTConvolution

[Bradley Lowekamp]

Gaetan,

Nice to see you taking SimpleITK for a spin :)

You need to inspect the input image types a little. It's reading them an RGB images into a VectorImage type. Implicit types can be a pain.

You can utilize the second argument of the ReadImage method to specify the desired pixel type, say "sitk.sitkFloat32".

Brad

BTW,
I have been wanting to pick you brain about way to make the LabelMaps more extendible. I did some classes [1] where the parents was a template argument, so that you could compose different label map objects, and similarly filters. The usage got a little complicated though[2].

[1] https://github.com/blowekamp/itkOBBLabelMap/tree/master/include
[2] https://github.com/blowekamp/itkOBBLabelMap/blob/master/test/itkOrientedBoundingBoxImageLabelMapFilterTest1.cxx#L42


On Apr 2, 2015, at 9:47 AM, Gaetan Lehmann <gaetan.lehmann at gmail.com> wrote:

> Hi Brad,
> 
> I'm trying to use SimpleITK's FFTConvolution from python:
> 
>   import SimpleITK as sitk
>   img = sitk.ReadImage("/tmp/cthead1.png")
>   kernel = sitk.ReadImage("/tmp/kernel2.png")
>   conv = sitk.FFTConvolution(img, kernel)
> 
> the last line fails with the error:
> 
> Traceback (most recent call last):
>   File "/tmp/test.py", line 5, in <module>
>     conv = sitk.FFTConvolution(img, kernel)
>   File "/Users/glehmann/Library/Python/2.7/lib/python/site-packages/SimpleITK/SimpleITK.py", line 17771, in FFTConvolution
>     return _SimpleITK.FFTConvolution(*args, **kwargs)
> RuntimeError: Exception thrown in SimpleITK FFTConvolution: /scratch/dashboards/SimpleITK-OSX10.7-intel-pkg/SimpleITK/Code/Common/include/sitkMemberFunctionFactory.hxx:193:
> sitk::ERROR: Pixel type: vector of 8-bit unsigned integer is not supported in 2D byN3itk6simple25FFTConvolutionImageFilterE
> 
> I get the same error when building from source and when installing SimpleITK with
> 
>   pip install --user SimpleITK
> 
> This is on a mac running yosemite.
> 
> Would you have an idea of what is wrong?
> 
> Thanks,
> 
> Gaëtan
> 

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