[ITK] [ITK-dev] Patches for v4.6.1

[Matthew McCormick (thewtex)]

Great, thanks!  Merged to master.  Will merge to release tomorrow
after hitting the dashboards.

On Thu, Sep 25, 2014 at 10:37 AM, Bradley Lowekamp
<blowekamp at mail.nih.gov> wrote:
> This minor one too, fixes something that was merged into release last week:
>
> http://review.source.kitware.com/#/c/17202/
>
> On Sep 25, 2014, at 10:29 AM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>
>> Hi,
>>
>> We currently have the patches below on the "release" branch for the
>> v4.6.1 release.  Are there any patches missing?
>>
>> Thanks,
>> Matt
>>
>>
>> Arnaud Gelas (3):
>>      BUG: fix gdcm version in GDCMImageIO.
>>      COMP: missing cast when calling gdcm::DataElement::SetByteValue
>>      BUG: GDCMImageIO was not working properly when m_KeepOriginalUID is false
>>
>> Brad King (1):
>>      COMP: Fix vxl_config_macros usage of CMake check macros
>>
>> Bradley Lowekamp (7):
>>      ENH: Adding License file from upstream MetaIO
>>      ENH: Adding script to update MetaIO from upstream
>>      ENH: Remove ITK MetaIO to prepare for upstream import
>>      COMP: Fix variable type for Set/Get macros
>>      BUG: Use METER of sCAL scale unit
>>      BUG: Use PNG_SCALE_METER for PNG sCAL unit
>>      BUG: Fix overflows computing size of read tiff image
>>
>> Christopher Mullins (1):
>>      COMP: Allows latex to compile for ITKSoftwareGuide
>>
>> David T. Chen (1):
>>      DOC: Fixed HistogramThresholdImageFitler
>>
>> Gert Wollny (1):
>>      COMP: Fix SSE2 build errors with WrapITK on GCC 4.9. (ForRelease)
>>
>> Girish Mallya (1):
>>      BUG: Tests added for BinaryImageToLabelMapFilter for single-row images.
>>
>> Hans Johnson (12):
>>      COMP: Add tolerance for comparing floating point
>>      PERF: Remove non-threadable algorithm components
>>      PERF: Remove large foot print of PDF derivatives.
>>      PERF: Revert Remove large foot print of PDF derivatives.
>>      STYLE: Test against almost equal for floating point values
>>      STYLE: Non-exact floating point testing
>>      PERF: Distribute initialization per thread buffers
>>      ENH: Remove unnecessary mutable qualifier.
>>      STYLE: Remove comment with no meaning.
>>      ENH: Moved accumlator logic to main MI class
>>      ENH: Allow staggering of accumulations per thread.
>>      PERF: Zero reset thread buffers during finalize
>>
>> KWSys Robot (2):
>>      KWSys 2014-07-18 (65b36ede)
>>      KWSys 2014-08-04 (e787837a)
>>
>> Matthew McCormick (30):
>>      BUG: ArchiveTestingData.py future imports must occur at the beginning.
>>      DOC: Remove Image2.cxx reference from Book 2.
>>      DOC: Fix Software Guide page overruns in IterativeClosestPoint3.cxx.
>>      DOC: Remove references to Book 1 sections from Book 2.
>>      DOC: Make BinaryThresholdImageFilter not floating.
>>      DOC: Fix Software Guide figure caption for FlipImageFilter.
>>      DOC: Avoid duplicate figure description in ResampleImageFilter2.cxx.
>>      DOC: Remove duplicate figure in
>> LaplacianRecursiveGaussianImageFilter2.cxx.
>>      DOC: ImageRandomConstIteratorWithIndex table reference.
>>      BUG: Bump GCCXML to 2014-08-06.
>>      BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.
>>      BUG: Call clear instead of empty on PatchBasedDenoising EmptyCaches().
>>      BUG: Fix Size() in ImageToListSampleAdaptor for VectorImage's.
>>      BUG: Fix alpha assignment for RGBA TIFF.
>>      BUG: Fix Nifti IO read with large images.
>>      BUG: Improve thread-safety and performance of
>> PCAShapeSignedDistanceFunction.
>>      DOC: itk::statistics -> itk::Statistics.
>>      DOC: Remove duplicate text in LaplacianRecursiveGaussian example.
>>      DOC: Fix Software Guide page overruns in IterativeClosestPoint{1,2}.cxx.
>>      BUG: TransformFileReader does not clear its TransformList.
>>      BUG: Prevent dangling pointer in HDF5TransformIO.
>>      COMP: Fix missing prefix in ITKv3ImageRegistration20Test.
>>      BUG: Do not return SmartPointers in TimeVaryingVelocityFieldTransform
>>      STYLE: Improve style in BinaryImageToLabelMapFilter.
>>      BUG: Fix BinaryImageToLabelMapFilter on 1D image.
>>      ENH: Improve precision of the joint PDF sum
>>      BUG: Fix BinShrinkImageFilter for different input/output image types.
>>      COMP: Fix transform type for ITKv3/IterativeClosestPoint2.
>>      COMP: Add missing wrapping for TransformIOBaseTemplate.
>>      BUG: gdcm::StringFilter recognizes backslash delimiter.
>>
>> MetaIO Maintainers (1):
>>      MetaIO (reduced)
>>
>> Michka Popoff (4):
>>      BUG: Improve SWIG version check
>>      BUG: Add VTK_VERSION for older VTK versions
>>      BUG: Update VTK minimum version (for release)
>>      BUG: Fix memory leak in MetaImageIO after exception
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