[ITK] Patches for v4.6.1

[Matt McCormick]

Hi,

We currently have the patches below on the "release" branch for the
v4.6.1 release.  Are there any patches missing?

Thanks,
Matt


Arnaud Gelas (3):
      BUG: fix gdcm version in GDCMImageIO.
      COMP: missing cast when calling gdcm::DataElement::SetByteValue
      BUG: GDCMImageIO was not working properly when m_KeepOriginalUID is false

Brad King (1):
      COMP: Fix vxl_config_macros usage of CMake check macros

Bradley Lowekamp (7):
      ENH: Adding License file from upstream MetaIO
      ENH: Adding script to update MetaIO from upstream
      ENH: Remove ITK MetaIO to prepare for upstream import
      COMP: Fix variable type for Set/Get macros
      BUG: Use METER of sCAL scale unit
      BUG: Use PNG_SCALE_METER for PNG sCAL unit
      BUG: Fix overflows computing size of read tiff image

Christopher Mullins (1):
      COMP: Allows latex to compile for ITKSoftwareGuide

David T. Chen (1):
      DOC: Fixed HistogramThresholdImageFitler

Gert Wollny (1):
      COMP: Fix SSE2 build errors with WrapITK on GCC 4.9. (ForRelease)

Girish Mallya (1):
      BUG: Tests added for BinaryImageToLabelMapFilter for single-row images.

Hans Johnson (12):
      COMP: Add tolerance for comparing floating point
      PERF: Remove non-threadable algorithm components
      PERF: Remove large foot print of PDF derivatives.
      PERF: Revert Remove large foot print of PDF derivatives.
      STYLE: Test against almost equal for floating point values
      STYLE: Non-exact floating point testing
      PERF: Distribute initialization per thread buffers
      ENH: Remove unnecessary mutable qualifier.
      STYLE: Remove comment with no meaning.
      ENH: Moved accumlator logic to main MI class
      ENH: Allow staggering of accumulations per thread.
      PERF: Zero reset thread buffers during finalize

KWSys Robot (2):
      KWSys 2014-07-18 (65b36ede)
      KWSys 2014-08-04 (e787837a)

Matthew McCormick (30):
      BUG: ArchiveTestingData.py future imports must occur at the beginning.
      DOC: Remove Image2.cxx reference from Book 2.
      DOC: Fix Software Guide page overruns in IterativeClosestPoint3.cxx.
      DOC: Remove references to Book 1 sections from Book 2.
      DOC: Make BinaryThresholdImageFilter not floating.
      DOC: Fix Software Guide figure caption for FlipImageFilter.
      DOC: Avoid duplicate figure description in ResampleImageFilter2.cxx.
      DOC: Remove duplicate figure in
LaplacianRecursiveGaussianImageFilter2.cxx.
      DOC: ImageRandomConstIteratorWithIndex table reference.
      BUG: Bump GCCXML to 2014-08-06.
      BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.
      BUG: Call clear instead of empty on PatchBasedDenoising EmptyCaches().
      BUG: Fix Size() in ImageToListSampleAdaptor for VectorImage's.
      BUG: Fix alpha assignment for RGBA TIFF.
      BUG: Fix Nifti IO read with large images.
      BUG: Improve thread-safety and performance of
PCAShapeSignedDistanceFunction.
      DOC: itk::statistics -> itk::Statistics.
      DOC: Remove duplicate text in LaplacianRecursiveGaussian example.
      DOC: Fix Software Guide page overruns in IterativeClosestPoint{1,2}.cxx.
      BUG: TransformFileReader does not clear its TransformList.
      BUG: Prevent dangling pointer in HDF5TransformIO.
      COMP: Fix missing prefix in ITKv3ImageRegistration20Test.
      BUG: Do not return SmartPointers in TimeVaryingVelocityFieldTransform
      STYLE: Improve style in BinaryImageToLabelMapFilter.
      BUG: Fix BinaryImageToLabelMapFilter on 1D image.
      ENH: Improve precision of the joint PDF sum
      BUG: Fix BinShrinkImageFilter for different input/output image types.
      COMP: Fix transform type for ITKv3/IterativeClosestPoint2.
      COMP: Add missing wrapping for TransformIOBaseTemplate.
      BUG: gdcm::StringFilter recognizes backslash delimiter.

MetaIO Maintainers (1):
      MetaIO (reduced)

Michka Popoff (4):
      BUG: Improve SWIG version check
      BUG: Add VTK_VERSION for older VTK versions
      BUG: Update VTK minimum version (for release)
      BUG: Fix memory leak in MetaImageIO after exception