[ITK] [ITK-users] Fwd: using simpleITK with anaconda python distribution

[Bradley Lowekamp]

Great to hear you got it working!!!

I'll add a FAQ with specific instruction and some of the lessons learned here. 

Brad

> On Sep 13, 2014, at 8:20 PM, Vishwa <vishwanath.somashekar at gmail.com> wrote:
> 
> It finally worked with the conda install --use-local simpleitk command.
> 
> Thanks everyone
> 
> Regards,
> vishwa
> 
>> On Sat, Sep 13, 2014 at 2:36 PM, Vishwa <vishwanath.somashekar at gmail.com> wrote:
>> I didn't remove it. How exactly do I do that? Also, from which folder should i run the conda install --use-local simpleitk command. 
>> 
>> I changed to conda recipes folder and issued the command. I got an error
>> 
>>  conda install --use-local simpleitk
>> Fetching package metadata: ...Error: Could not find URL: file:///Users/dagarshali/anaconda/conda-bld/osx-64/
>> 
>> 
>>> On Sat, Sep 13, 2014 at 12:00 PM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
>>> Did you remove the installed SimpleITK from the setup.py script before running "const install --use-local simpleitk". I am guessing conda didn't install simpleitk correctly because of the old version manually installed. 
>>> 
>>> Brad
>>> 
>>>> On Sep 12, 2014, at 10:52 PM, Vishwa <vishwanath.somashekar at gmail.com> wrote:
>>>> 
>>>> Hi Brad,
>>>> Thanks for all the help. I tried the conda install --use-local simpleitk from the conda-recipes folder. It didn't seem to matter..
>>>> 
>>>> Here is the thing that I noticed..
>>>> 
>>>> If I add the path of the lib (~/anaconda/lib) to DYLD_LIBRARY_PATH, then i can get it to work from the python that's invoked from the terminal. However, when I try the same thing from the notebook or from spyder, I get the following error.
>>>> 
>>>> >>import SimpleITK as sitk
>>>> Traceback (most recent call last):
>>>>   File "<stdin>", line 1, in <module>
>>>>   File "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/__init__.py", line 1, in <module>
>>>>     from .SimpleITK import *
>>>>   File "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py", line 28, in <module>
>>>>     _SimpleITK = swig_import_helper()
>>>>   File "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py", line 24, in swig_import_helper
>>>>     _mod = imp.load_module('_SimpleITK', fp, pathname, description)
>>>> ImportError: dlopen(/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so, 2): Library not loaded: libpng15.15.dylib
>>>>   Referenced from: /Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so
>>>>   Reason: image not found
>>>> 
>>>> Any suggestions?
>>>> 
>>>> 
>>>>> On Fri, Sep 12, 2014 at 6:59 PM, Vishwa <vishwanath.somashekar at gmail.com> wrote:
>>>>> Hi Brad,
>>>>> Thanks for all the help. I tried the conda install --use-local simpleitk from the conda-recipes folder. It didn't seem to matter..
>>>>> 
>>>>> Here is the thing that I noticed..
>>>>> 
>>>>> If I add the path of the lib (~/anaconda/lib) to DYLD_LIBRARY_PATH, then i can get it to work from the python that's invoked from the terminal. However, when I try the same thing from the notebook or from spyder, I get the following error.
>>>>> 
>>>>> >>import SimpleITK as sitk
>>>>> Traceback (most recent call last):
>>>>>   File "<stdin>", line 1, in <module>
>>>>>   File "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/__init__.py", line 1, in <module>
>>>>>     from .SimpleITK import *
>>>>>   File "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py", line 28, in <module>
>>>>>     _SimpleITK = swig_import_helper()
>>>>>   File "/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/SimpleITK.py", line 24, in swig_import_helper
>>>>>     _mod = imp.load_module('_SimpleITK', fp, pathname, description)
>>>>> ImportError: dlopen(/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so, 2): Library not loaded: libpng15.15.dylib
>>>>>   Referenced from: /Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.8.0.post29-py2.7-macosx-10.5-x86_64.egg/SimpleITK/_SimpleITK.so
>>>>>   Reason: image not found
>>>>> 
>>>>> Any suggestions?
> 
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