[ITK] [ITK-users] Issue installing SimpleITK via conda-recipe

[Bradley Lowekamp]

Hello,

Can you please send me you CMakeCache.txt file from the build directory.

The simplest thing to do may be to remote using the anaconda "system" tiff library and just use the one ITK has. This can be done by modifying the conda recipe build script here [1].

Most likely there is some confusion which occurs during the CMake configuration about which tiff library to use.

Brad

[1] https://github.com/conda/conda-recipes/blob/master/simpleitk/build.sh#L35

On Oct 23, 2014, at 4:43 AM, Guillaume Lemaître <g.lemaitre58 at gmail.com> wrote:

> Hi all,
> 
> First, I am a newbie in Python and anaconda and sorry in advance if things seems trivial
> I tried to install SimpleITK through conda-recipe. The installation by itself seems to be fined but the test is failling:
> 
> ==== testing package: simpleitk-0.8.0.post29-py27_0 =====
> import: u'SimpleITK'
> Traceback (most recent call last):
>   File "/home/lemaitre/anaconda/conda-bld/test-tmp_dir/run_test.py", line 25, in <module>
>     import SimpleITK
>   File "/home/lemaitre/anaconda/envs/_test/lib/python2.7/site-packages/SimpleITK/__init__.py", line 1, in <module>
>     from .SimpleITK import *
>   File "/home/lemaitre/anaconda/envs/_test/lib/python2.7/site-packages/SimpleITK/SimpleITK.py", line 28, in <module>
>     _SimpleITK = swig_import_helper()
>   File "/home/lemaitre/anaconda/envs/_test/lib/python2.7/site-packages/SimpleITK/SimpleITK.py", line 24, in swig_import_helper
>     _mod = imp.load_module('_SimpleITK', fp, pathname, description)
> ImportError: /home/lemaitre/anaconda/envs/_test/lib/python2.7/site-packages/SimpleITK/_SimpleITK.so: symbol TIFFFieldDataType, version LIBTIFF_4.0 not defined in file libtiff.so.5 with link time reference
> TESTS FAILED: simpleitk-0.8.0.post29-py27_0
> 
> I got that the issue is linked with the libtiff but I believed that anaconda would manage the installation of the dependencies needed.
> 
> My system is:
> Ubuntu 14.04
> Python 2.7.8 |Anaconda 2.1.0 (64-bit)| (default, Aug 21 2014, 18:22:21) 
> [GCC 4.4.7 20120313 (Red Hat 4.4.7-1)] on linux2
> 
> Cheers,
> 
> -- 
> LEMAÎTRE Guillaume
> PhD Candiate
> MSc Erasmus Mundus ViBOT (Vision-roBOTic)
> MSc Business Innovation and Technology Management
> 
> g.lemaitre58 at gmail.com
> 
> 
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