[ITK] [ITK-users] White Background on rotated image

[Matt McCormick]

Hi Matias,

This example may have a hint on how to write a series [1].

HTH,
Matt

[1] http://itk.org/Doxygen/html/IO_2ImageReadDicomSeriesWrite_8cxx-example.html

On Thu, Nov 13, 2014 at 12:18 PM, Matias Montroull <matimontg at gmail.com> wrote:
> Now I have another question. This example is just for one file, is there a
> way to do it for a directory containing a set of DICOM files?
>
> On Thu, Nov 13, 2014 at 2:16 PM, Matias Montroull <matimontg at gmail.com>
> wrote:
>>
>> never mind, it was my bad. The InputPixelType was unsigned char and should
>> have been unsigned short
>>
>> On Thu, Nov 13, 2014 at 2:14 PM, Matias Montroull <matimontg at gmail.com>
>> wrote:
>>>
>>> Bradley, as soon as I enter this line of code:
>>>
>>> typedef itk::GDCMImageIO ImageIOType;
>>> ImageIOType::Pointer gdcmImageIO = ImageIOType::New();
>>> writer->SetImageIO(gdcmImageIO);
>>>
>>> I get a bad image as result.. any ideas what could it be?
>>>
>>> On Thu, Nov 13, 2014 at 11:36 AM, Bradley Lowekamp
>>> <blowekamp at mail.nih.gov> wrote:
>>>>
>>>> Hello again,
>>>>
>>>> This is a non-trivial task where caution in needed to determine which
>>>> tags should be copied. But here is a basic example here:
>>>> http://itk.org/Wiki/ITK/Examples/DICOM/ResampleDICOM
>>>>
>>>> Brad
>>>>
>>>> On Nov 13, 2014, at 9:30 AM, Matias Montroull <matimontg at gmail.com>
>>>> wrote:
>>>>
>>>> I have one more question, it seems the writer method removes lot of tags
>>>> from the image, is there an option to keep the original tags such as patient
>>>> name, model, manufacture etc?
>>>>
>>>> On Thu, Nov 13, 2014 at 11:27 AM, Matias Montroull <matimontg at gmail.com>
>>>> wrote:
>>>>>
>>>>> Bradley, I must say you're the man! that did the trick, thanks a lot!
>>>>>
>>>>> On Thu, Nov 13, 2014 at 10:59 AM, Bradley Lowekamp
>>>>> <blowekamp at mail.nih.gov> wrote:
>>>>>>
>>>>>> Hello,
>>>>>>
>>>>>> Check out the ImageToImageFilter::SetDefaultPixelValue method [1].
>>>>>>
>>>>>> Brad
>>>>>>
>>>>>> [1]
>>>>>> http://www.itk.org/Doxygen/html/classitk_1_1ResampleImageFilter.html#a227397f3786a0ec4d3107cb73033b4be
>>>>>>
>>>>>> On Nov 13, 2014, at 8:56 AM, Matias Montroull <matimontg at gmail.com>
>>>>>> wrote:
>>>>>>
>>>>>> Hi,
>>>>>>
>>>>>> I'm running this example:
>>>>>>
>>>>>> http://www.itk.org/Doxygen/html/Filtering_2ResampleImageFilter3_8cxx-example.html
>>>>>>
>>>>>> and I'm getting this result which is fine but I need the white
>>>>>> sections left due to the rotation to be black. how can I achieve this?
>>>>>>
>>>>>> <Capture.JPG>
>>>>>>
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>>>>>>
>>>>>
>>>>
>>>>
>>>
>>
>
>
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