[ITK] [ITK-users] SimpleITK - Reading different DICOM serie

[Guillaume Lemaître]

Hi Dave

I build SimpleITK through anaconda recipe. I check and the versions are:
SimpleITK 0.9.0 and ITK 4.6.1
I will downgrade the build to be able to work. Let me know if I can help to
fix this issue.

Cheers,

On 3 November 2014 22:23, David Chen <dchen at mail.nih.gov> wrote:

> Hi Guillaume
>
> What version of SimpleITK are you running?  I tried your script using the
> current git master, and it doesn’t work for me.  But when I ran it using
> SimpleITK 0.8.0 it does.  So clearing something has gone wrong that we have
> to figure out.  For now, try and use 0.8.0.
>
>
> Cheers,
> Dave
>
>
> *From: *Guillaume Lemaître <g.lemaitre58 at gmail.com>
> *Subject: **[ITK-users] SimpleITK - Reading different DICOM serie*
> *Date: *October 31, 2014 at 7:03:36 PM EDT
> *To: *"insight-users at itk.org" <insight-users at itk.org>
>
>
> Hi all,
>
> I am currently using SimpleITK with python to read directly some DICOM
> data.
> My dataset is corresponding to an MRI modality composed of 40 series. Each
> serie is a 3D volume.
>
> I would like to read the serie one-by-one. As a minimal example, I can
> post the following code:
>
> reader = sitk.ImageSeriesReader()
> # For each serie found
> for serie in reader.GetGDCMSeriesIDs(path_to_data):
>     # Get the dicom filename corresponding to the current serie
>     dicom_names = reader.GetGDCMSeriesFileNames(path_to_data, serie)
>     reader.SetFileNames(dicom_names)
>     image = reader.Execute()
>
> I got the following error:
>
> WARNING: In
> /home/lemaitre/anaconda/conda-bld/work/build/ITK/Modules/IO/GDCM/src/itkGDCMSeriesFileNames.cxx,
> line 138
> GDCMSeriesFileNames (0x3078840): No Series were found
>
> However, the output of reader.GetGDCMSeriesIDs(path_to_data) seems ok:
> ('1.2.826.0.1.3680043.2.1125.1.12083572272639445972057901411530444',
>  ............................ 40 lines ...........................
>  '1.2.826.0.1.3680043.2.1125.1.98804240625293208256969403455867278')
>
> So my question is the following. What is the right way to passing the
> serieID to the GetGDCMSeriesFileNames() function.
>
> Thanks in advance,
>
> Best regards,
> --
>
>
>
>
> *LEMAÎTRE GuillaumePhD CandiateMSc Erasmus Mundus ViBOT
> (Vision-roBOTic)MSc Business Innovation and Technology Management*
> g.lemaitre58 at gmail.com
>
>
> *ViCOROB - Computer Vision and Robotic Team*
> Universitat de Girona, Campus Montilivi, Edifici P-IV 17071 Girona
> Tel. +34 972 41 98 12 - Fax. +34 972 41 82 59
> http://vicorob.udg.es/
>
> *LE2I - Le Creusot*IUT Le Creusot, Laboratoire LE2I, 12 rue de la
> Fonderie, 71200 Le Creusot
> Tel. +33 3 85 73 10 90 - Fax. +33 3 85 73 10 97
> http://le2i.cnrs.fr
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>
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-- 




*LEMAÎTRE GuillaumePhD CandiateMSc Erasmus Mundus ViBOT (Vision-roBOTic)MSc
Business Innovation and Technology Management*
g.lemaitre58 at gmail.com

*ViCOROB - Computer Vision and Robotic Team*
Universitat de Girona, Campus Montilivi, Edifici P-IV 17071 Girona
Tel. +34 972 41 98 12 - Fax. +34 972 41 82 59
http://vicorob.udg.es/

*LE2I - Le Creusot*IUT Le Creusot, Laboratoire LE2I, 12 rue de la Fonderie,
71200 Le Creusot
Tel. +33 3 85 73 10 90 - Fax. +33 3 85 73 10 97
http://le2i.cnrs.fr

https://sites.google.com/site/glemaitre58/
Vice - Chairman of A.S.C. Fours UFOLEP
Chairman of A.S.C. Fours FFC
Webmaster of http://ascfours.free.fr
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