[ITK] [ITK-dev] HDF5 TransformIO broken with System HDF5

[Matt McCormick]

Yes [1], but it looks like ITK was not configured correctly?  I will
try turning on the Review module...

[1] http://open.cdash.org/buildSummary.php?buildid=3320996

On Thu, May 8, 2014 at 9:14 AM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
> Great,
>
> Hopefully it's finished by now :)
>
> Brad
>
> On May 7, 2014, at 5:46 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>
>> Thanks, Brad.
>>
>> Debug build with those packages on Ubuntu 12.04:
>>
>>  http://open.cdash.org/buildSummary.php?buildid=3320987
>>
>> Starting SimpleITK Debug build...
>>
>> On Wed, May 7, 2014 at 1:39 PM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
>>> Matt on Ubuntu 12 I have the following installed:
>>>
>>> libhdf5-serial-1.8.4                            install
>>> libhdf5-serial-dev                              install
>>>
>>> And on RHEL I have:
>>>
>>> hdf5-devel-1.8.5.patch1-7.el6.x86_64
>>> hdf5-1.8.5.patch1-7.el6.x86_64
>>>
>>> Brad
>>>
>>> On May 7, 2014, at 1:31 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>>>
>>>> Hi Brad,
>>>>
>>>> On Ubuntu 12.04, there appears to be a number of HDF5 "-dev" packages:
>>>>
>>>> libhdf5-lam-dev
>>>> libhdf5-mpi-dev
>>>> libhdf5-mpich-dev
>>>> libhdf5-openmpi-dev
>>>> libhdf5-serial-dev
>>>>
>>>> Which one are you using?
>>>>
>>>> Thanks,
>>>> Matt
>>>>
>>>> On Wed, May 7, 2014 at 1:23 PM, Matt McCormick
>>>> <matt.mccormick at kitware.com> wrote:
>>>>> Hi Brad,
>>>>>
>>>>> It looks like our code coverage for the HDF TransformIO is pretty good
>>>>> [1], but I do not see a dashboard submission for those platforms that
>>>>> use a system HDF5.  I will set one up on faraway.kitware and try to
>>>>> reproduce the SimpleITK test failure.
>>>>>
>>>>> Thanks,
>>>>> Matt
>>>>>
>>>>> [1] http://lorensen.github.io/VTKCodeCoverage/ITK/IO/TransformHDF5/src/index.html
>>>>>
>>>>> On Wed, May 7, 2014 at 8:59 AM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
>>>>>> Hello,
>>>>>>
>>>>>> I wrote some SimpleITK tests to write out HDF5 transforms. They are failing when using ITK built with system HDF5. Specifically with RHEL5 and Ubuntu 12.04. I believe this is a critical issue as it's how ITK is being built for Linux distributions.
>>>>>>
>>>>>> Looking through my ITK nightly build testing directory I didn't see any hdf5 files which leads me to believe this IO transform format may not be well tested.
>>>>>>
>>>>>> I would greatly appreciate some assistance on this issue.
>>>>>>
>>>>>> Here is my related SimpleITK issue.
>>>>>> https://issues.itk.org/jira/browse/SIMPLEITK-535
>>>>>>
>>>>>> Thanks,
>>>>>> Brad
>>>>>>
>>>
>
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