[ITK] [ITK-dev] HDF5 TransformIO broken with System HDF5

[Matt McCormick]

Thanks, Brad.

Debug build with those packages on Ubuntu 12.04:

  http://open.cdash.org/buildSummary.php?buildid=3320987

Starting SimpleITK Debug build...

On Wed, May 7, 2014 at 1:39 PM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
> Matt on Ubuntu 12 I have the following installed:
>
> libhdf5-serial-1.8.4                            install
> libhdf5-serial-dev                              install
>
> And on RHEL I have:
>
> hdf5-devel-1.8.5.patch1-7.el6.x86_64
> hdf5-1.8.5.patch1-7.el6.x86_64
>
> Brad
>
> On May 7, 2014, at 1:31 PM, Matt McCormick <matt.mccormick at kitware.com> wrote:
>
>> Hi Brad,
>>
>> On Ubuntu 12.04, there appears to be a number of HDF5 "-dev" packages:
>>
>> libhdf5-lam-dev
>> libhdf5-mpi-dev
>> libhdf5-mpich-dev
>> libhdf5-openmpi-dev
>> libhdf5-serial-dev
>>
>> Which one are you using?
>>
>> Thanks,
>> Matt
>>
>> On Wed, May 7, 2014 at 1:23 PM, Matt McCormick
>> <matt.mccormick at kitware.com> wrote:
>>> Hi Brad,
>>>
>>> It looks like our code coverage for the HDF TransformIO is pretty good
>>> [1], but I do not see a dashboard submission for those platforms that
>>> use a system HDF5.  I will set one up on faraway.kitware and try to
>>> reproduce the SimpleITK test failure.
>>>
>>> Thanks,
>>> Matt
>>>
>>> [1] http://lorensen.github.io/VTKCodeCoverage/ITK/IO/TransformHDF5/src/index.html
>>>
>>> On Wed, May 7, 2014 at 8:59 AM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
>>>> Hello,
>>>>
>>>> I wrote some SimpleITK tests to write out HDF5 transforms. They are failing when using ITK built with system HDF5. Specifically with RHEL5 and Ubuntu 12.04. I believe this is a critical issue as it's how ITK is being built for Linux distributions.
>>>>
>>>> Looking through my ITK nightly build testing directory I didn't see any hdf5 files which leads me to believe this IO transform format may not be well tested.
>>>>
>>>> I would greatly appreciate some assistance on this issue.
>>>>
>>>> Here is my related SimpleITK issue.
>>>> https://issues.itk.org/jira/browse/SIMPLEITK-535
>>>>
>>>> Thanks,
>>>> Brad
>>>>
>
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