[ITK Community] [Insight-developers] Patches for ITK 4.5.1

Matt McCormick matt.mccormick at kitware.com
Mon Feb 10 11:09:56 EST 2014 

Merged to release.

Thanks,
Matt

On Mon, Feb 10, 2014 at 9:02 AM, Bradley Lowekamp
<blowekamp at mail.nih.gov> wrote:
> Hello Michka,
>
> Yes. I based this patch on "v4.5.0" tag, ( not including the SimpleITK patch
> or your patch below ). This fixed all linking error message that were of the
> form mentioned in JIRA ITK-3229. So I think this is the correct fix for it
> not side stepping the issue.
>
> This patch should be merged into release.
>
> Brad
>
> On Feb 7, 2014, at 4:12 PM, Michka Popoff <michkapopoff at gmail.com> wrote:
>
> Is this why there were all these errors when wrapping for python on OS
> 10.8.5 with clang 5.0.2 ?
>
> (Which were fixed with this patch :
> http://review.source.kitware.com/#/c/14033/ )
>
> Le 7 févr. 2014 à 22:04, Bradley Lowekamp a écrit :
>
> Hello Folks,
>
> I updated mini7's continuous to be shared libraries. So that's going to be
> all red tomorrow.
>
> But I have the patch for it here:
> http://review.source.kitware.com/#/c/14319/
>
> Have a good weekend folks!
> Brad
>
> On Feb 7, 2014, at 2:02 PM, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
>
> Hello,
>
> As I recently turn on shared libraries for on my Mavericks build, I am
> getting many more linking  error on the release branch now:
> http://open.cdash.org/buildSummary.php?buildid=3211313
> I'll need to look into the further.
>
> Brad
>
> On Feb 7, 2014, at 8:35 AM, Brian Helba <brian.helba at kitware.com> wrote:
>
> Please note, one of the dashboard clients testing the release branch has 16
> new failing tests, as a result of the TIFF patch that was merged yesterday.
>
> On Feb 7, 2014 8:16 AM, "Bradley Lowekamp" <blowekamp at mail.nih.gov> wrote:
>>
>> Matt,
>>
>> Also this patch fixes an infinite loop with libc++:
>>
>> commit b5dd8d4b9cfa8b798ac182a31dcbdaca290958e5
>> Author: Bradley Lowekamp <blowekamp at mail.nih.gov>
>> Date:   Sat Jan 18 23:32:15 2014 -0500
>>
>>     COMP: fix failing voronoi segmentation tests
>>
>>     Internal comp method used for std::sort didn't induce a strict weak
>>     ordering ( <= vs < ) as required, since it returned true on
>>     equal. This cause failures likely due to difference algorithms in
>>     libc++.
>>
>>     Change-Id: Ic4c8f61d53bce6858b4edcd3a93c605271b0c65b
>>
>> Brad
>>
>> On Feb 7, 2014, at 8:09 AM, Bradley Lowekamp <blowekamp at mail.nih.gov>
>> wrote:
>>
>> > Matt,
>> >
>> > I think we should consider including the following patch:
>> >
>> > commit b5e114f94a7a64ff0c426067335cf3f42976eb29
>> > Author: Hans Johnson <hans-johnson at uiowa.edu>
>> > Date:   Thu Sep 26 23:51:17 2013 -0500
>> >
>> >    PERF: Reviewing code for facilitating compiler optimizations
>> >
>> >    The itkLinearInterpolateImageFunction.h is such a core
>> >    function, it deserves special attention for gaining
>> >    any amount of speed improvement can help
>> >    improve the speed of many programs.
>> >
>> >    Change-Id: Ibba6caa0468e850ab6b487565943d07af9f82f8c
>> >
>> > This will provide a large benefit to many users.
>> >
>> > Additionally the SCIFIO issue with linked libraries is a good candidate.
>> >
>> > Brad
>> >
>> > On Feb 6, 2014, at 12:44 AM, Matt McCormick <matt.mccormick at kitware.com>
>> > wrote:
>> >
>> >> Hi,
>> >>
>> >> ITK 4.5 is progressing nicely, and a number of important bug fixes
>> >> have been applied.  Thanks to everyone that has contributed.  We want
>> >> to make sure that all low-risk patches that fix critical issues are
>> >> included in 4.5.1.  The current list (to be pushed following testing)
>> >> is
>> >>
>> >> Bill Lorensen (1):
>> >>     BUG: Tiff compression was broken and untested
>> >>
>> >> Bradley Lowekamp (5):
>> >>     BUG: Correctly re-throw exception to restore AbortEvent,
>> >> ProcessAborted
>> >>     BUG: Adding export specification to Exception objects
>> >>     BUG: disable ipa-cp-clone in GDCM
>> >>     COMP: fix unused variable warning in abort test
>> >>     BUG: Do not throw exception in Probes with mis-matched Stop
>> >>
>> >> Brian Helba (2):
>> >>     BUG: Fix uninitialized variable in
>> >> GradientRecursiveGaussianImageFilter
>> >>     BUG: Make all specializations NumericTrails::SetLength re-zero
>> >> contents
>> >>
>> >> Hans Johnson (2):
>> >>     COMP: SimpleITK linkage failure
>> >>     BUG: Missing Modified() call
>> >>
>> >> Luke Bloy (2):
>> >>     BUG: Fixes itkBoxSpatialObject part of issue ITK-3153
>> >>     BUG: Fixes itkImageMaskSpatialObject part of issue ITK-3153
>> >>
>> >> Matthew McCormick (2):
>> >>     COMP: Update libminc to latest version.
>> >>     BUG: Remove unused itkAffineTransformXX.txt content links.
>> >>
>> >> Michka Popoff (1):
>> >>     BUG: Fix for the WrapITK.pth destination path
>> >>
>> >> Sean McBride (1):
>> >>     BUG: initialize m_SmallBlock ivar in ctor; fixes garbage read
>> >>
>> >> Anything missing?
>> >>
>> >> Thanks,
>> >> Matt
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