[ITK] [ANNOUNCE] ITK 4.7.0 has been released!
Matt McCormick
matt.mccormick at kitware.com
Fri Dec 19 17:59:20 EST 2014
On behalf of the Insight Toolkit community, we are proud to announce
that ITK 4.7.0 has been released!
Links to the Sourceforge.net tarballs can be found on the download page:
http://www.itk.org/ITK/resources/software.html
Outline
----------
1. Introduction
2. New Features
3. ITK Changelog
4. ITK Sphinx Examples Changelog
5. ITK Software Guide Changelog
6. ITK Apps Changelog
Introduction
-----------------
The 4.7 release is a major milestone that marks the hard work of many
outstanding community members. Congratulations and well done to the 29
contributors to this release. We would especially like to recognize
the new contributors, Gert Wollny, Girish Mallya, Christopher Mullins,
Umang B, David T. Chen, Danny Perry, Johan Andruejol, and Ismael
Belghiti.
Among the major contributions in this release: all ITK examples from
the Software Guide, Wiki Examples, and SphinxExamples are new indexed
and crossed linked in Doxygen -- when you visit the Doxygen page for
your favorite filter or other object, say the ResampleImageFilter,
there is a large selection of examples in the Examples section. TIFF
IO has undergone a significant cleanup and speed-up, and TIFF tags are
now read into the Image’s MetaDataDictionary. Three new Remote Modules
are available, for gradient computation, DICOM IO, and QuadEdgeMesh
filtering. Python wrapping, CMake configuration, and registration
continue to improve. A new, experimental thread pool is available --
to enable set the ITK_USE_THREADPOOL or call
itk::MultiThreader::SetGlobalDefaultUseThreadPool(true).
Thanks to everyone for their hard work!
Enjoy ITK!
New Features
------------------
* Documentation Improvements
- Update Software Guide registration examples to ITKv4 framework
- Wiki and Sphinx examples are indexed in Doxygen
- Clean Software Guide dashboard build
* Filtering Improvements
- New Laplacian deformation filter’s for QuadEdgeMesh’s
- IJ article: http://hdl.handle.net/10380/3410
- FFTComplexToComplexImageFilter out of Review, Vnl, FFTW implementations
- Faster recursive Gaussian on VectorImage
* ImageIO improvements
- PNG sCAL unit support
- TIFF IO performance greatly improved
- TIFF tags read into Image MetaDataDictionary
- MetaIO updated
- Better support for system GDCM
* Infrastructure improvements
- New method to erase a MetaDataDictionary entry
- New global method to set physical space tolerance
- New, experimental thread pool support
- NumericTraits::Zero and ::One are deprecated in favor of
::ZeroValue() and ::OneValue()
- VTK bridge modules only request required VTK modules
* New Remote Modules
- Higher Order Accurate Gradient
- http://hdl.handle.net/10380/3231
- IO Transform DCMTK
- http://hdl.handle.net/10380/3468
- Subdivision Quad Edge Mesh Filters
- http://hdl.handle.net/10380/3307
* Registration improvements
- LandmarkBasedTransformInitializer supports BSplineTransform
- Transverse inverse consistency increased
- Automatic initialization of the transform center for multi-stage
registrations
- Sparse point B-spline field estimate
- Mutual information faster, lower memory usage
* Wrapping improvements
- Wrapping now builds without type warnings
- pygccxml bumped to 1.6.2
- Latest GCCXML
- CMake wrapping infrastructure cleanup
- Build with Ninja CMake generator
- New GetTypes() and GetTypesAsList() methods
- ITK_WRAP_PYTHON is exposed in ITKConfig.cmake
* Many style improvements -- ITK gets more stylish with every release!
* Improved code coverage -- we are over 85%!
* *Lots* of important bug fixes
* And much more! See details in the log below.
List of changes since v4.7-rc02
-----------------------------------------
Bradley Lowekamp (1):
BUG: IOFDF remote module should stay with InsightConsortium repo
Christopher Mullins (3):
DOC: Fix code overlapping figure
STYLE: Keep the text in the margins
STYLE: Put newline before long doxygen reference
Cory Quammen (1):
BUG: Fix segfaults in ITKExamples
Matthew McCormick (8):
BUG: Reset ITK_MODULES_REQUESTED to all modules with multiple calls.
BUG: Configure against VTK 5.
COMP: Add ITK_SOURCE_DIR to doxygen EXAMPLE_PATH.
COMP: Increase DOT_GRAPH_MAX_NODES.
DOC: Add Doxygen macros for itkSetGetDecoratedObjectMacro.
ENH: Warning when reading a PNG with UNKNOWN unit and non-unit spacing.
BUG: Fix VTK5 module export code.
BUG: Fix LevelSetsv4Visualization VTK variable names.
Michka Popoff (1):
DOC: Improvements for Book1, Chap4
List of changes since v4.7-rc01
-----------------------------------------
Ali Ghayoor (1):
DOC: Revise the registration examples of ITKSoftwareGuide
Arnaud Gelas (3):
ENH: Adding SubdivisionQuadEdgeMeshFilters to ITK as remote module
COMP: address clang -Winconsistent-missing-override in ITKQuadEdgeMesh
COMP: fix warnings on dashboard for Subdivision remote module
Bradley Lowekamp (5):
BUG: Fix segfault when setting displacement field as null
BUG: Don't enable SSE rounding with OSX and gccxml
BUG: Add portable access to Tiff field name
BUG: Fix conversion compilation error
BUG: Rename remote module FDFImageIO -> IOFDF
Christopher Mullins (6):
STYLE: Fix line length in OpenJPEG license for 80 character.
DOC: Finish the ImageLinearIteratorWithIndex example.
DOC: Text and picture problems, book2
BUG: Fix text in margin issues
DOC: Edits for the beginning of chapter 5, Statistics
DOC: Fix empty code block.
Cory Quammen (1):
COMP: Avoid including VTK_USE_FILE within ITK
Kent Williams (1):
ENH: Add test to exercise issue with Transform::GetInverse
Matthew McCormick (7):
BUG: Register AzimuthElevationToCartesianTransform to factories.
DOC: Update texture feature class references.
BUG: Fix texture feature correlation computation for constant image.
STYLE: Put ImageToImageFilterCommon in its own file.
BUG: Wrap ImageToImageFilterCommon.
STYLE: Put ImageSourceCommon in its own file.
COMP: Add missing itkImageRegionSplitterBase to ImageSourceCommon.
Michka Popoff (1):
ENH: Add CVD and CVF types to
VectorIndexSelectionCastImageFilter wrappings
Ziv Yaniv (1):
COMP: fixed warnings from gcc4.1.2, made implicit casts explicit
List of changes since v4.6.0
--------------------------------------
Alexander Schmidt-Richberg (1):
ENH: Updated Remote Module VariationalRegistration to new git tag
Ali Ghayoor (10):
ENH: Make ITKv4 compatible with ITKSoftwareGuide
ENH: Add GetCurrentStepLength to RegularStepGradDescentOptv4
ENH: Convert three ImageRegistration Examples to ITKv4
ENH: Add multi-Res and multistage registration Examples to ITKv4
ENH: Convert DeformableReg examples to ITKv4 reg framework
BUG: Expand a test to reflect multi-metric registration bug
BUG: Fix multi metric point sampling bug in ImageRegistrationMethodv4
ENH: Add direct initialization to SyN registration
ENH: Direct initialization of SyN by restoring the state
ENH: LandmarkBasedTransformInitializer supports BSplineTransformType
Arnaud Gelas (15):
COMP: use find_package(VTK COMPONENTS) for LevelSetsv4Visualization
ENH: Importing Laplacian Deformation for QuadEdgeMesh
DOC: Add more explanation about SmoothingQuadEdgeMeshFilter's usage
ENH: SmoothingQuadEdgeMeshFilter::SetCoefficientMethod calls Modified()
ENH: Add progress report in itk::SmoothingQuadEdgeMeshFilter
BUG: fix gdcm version in GDCMImageIO.
COMP: missing cast when calling gdcm::DataElement::SetByteValue
COMP: missing cast when calling gdcm::DataElement::SetByteValue
ENH: increase LaplacianDeformation code coverage
STYLE: use typedef rather than inheritance
BUG: GDCMImageIO was not working properly when m_KeepOriginalUID is false
BUG: split include directories into appropriate cmake variables HDF5
BUG: missing gdcm libraries when using system GDCM
DOC: fix doxygen documentaiton for
itk::LaplacianDeformationQuadEdgeMeshFilter
ENH: Add one method to erase a tag into MetaDataDictionary
Bill Lorensen (5):
ENH: Specify required VTK modules
COMP: Wiki examples require additional vtk modules
ENH: Modify WikiExamples remote config
COMP: Bad test signature
COMP: Update tag for wiki examples
Brad King (6):
COMP: Fix vxl_config_macros usage of CMake check macros
ENH: Use if(DEFINED) to simplify conditions
COMP: Fix vxl_config_macros checks broken by refactoring
COMP: Fix one more vxl_config_macros check broken by refactoring
BUG: Fix itk_module_config for repeated calls
BUG: Fix itk_module_config for repeated calls
Bradley Lowekamp (52):
ENH: Adding License file from upstream MetaIO
ENH: Adding script to update MetaIO from upstream
ENH: Remove ITK MetaIO to prepare for upstream import
PERF: Remove dynamically allocated temporary in evaluate method
COMP: Fix variable type for Set/Get macros
BUG: Implement ITK Style Singleton design pattern
ENH: Add no throw exception specification for UnRegister methods
COMP: Must specify order as "noexcept override"
BUG: Add GetInverse for IdentityTransform
ENH: Adding SetIdentity method to base DisplacementField class
BUG: Remove unused redefinition of NULL
BUG: Don't print to std::cout in PrintSelf
ENH: Prefer the PrintSelfObjectMacro for printing nested objects
BUG: Use METER of sCAL scale unit
BUG: Use PNG_SCALE_METER for PNG sCAL unit
BUG: Use METER of sCAL scale unit
BUG: Use PNG_SCALE_METER for PNG sCAL unit
COMP: Fix signed to unsigned int comparison
BUG: Fix overflows computing size of read tiff image
ENH: Extract TiffReaderInternal to separate file
ENH: Refactor ReadTwoSamplePerPixelImage into template function
ENH: Refactor GenericReadImage into template function
BUG: Remove Zeiss 2-channel support code in TIFFImageIO ( and LSMImageIO )
ENH: Refactor method to convert RGBA image to output buffer
ENH: Refactor duplicated code to read a page
BUG: Fix right oriented tiff images
BUG: Remove dead separated plannar code, add test
STYLE: Fix minor kwstyle defects in test and test results
BUG: Use array delete operator for array new allocations
ENH: add arbitrary TIFF TAGs to meta-data dictionary
ENH: Reduce code duplicate in TIFFImageIO::ReadCurrentPage
BUG: Address Coverity warning about null pointer dereferences
ENH: Remove support for TIFF tile as 3D and dead code
ENH: RGBA read images should stay unchanged.
BUG: Override method to MakeOutput by name
ENH: Refactor per pixel conversion function to per scan-line method
PERF: Refactor color table lookup
BUG: Adding missing parentheses around boolean expression
ENH: adding TIFFImageIO test for RGB palette images
PERF: Improve recursive Gaussian perfromance with VectorImages
ENH: Query libtiff to determine compression support
BUG: Support TIFF tiled image with TIFFReadRGBAImage
BUG: Use SizeValueType for length of scanline
PERF: Store causal results directly in output buffers
COMP: Add explicit conversion to const char
COMP: Explicitly add override to GetNameOfClass method
COMP: Address internal segmentation fault with Intel compiler
ENH: Adding method to set global physical space tolerance
COMP: Explicitly add override to GetNameOfClass method
BUG: Add new TypeMacro for non-overloaded classes
BUG: Fix obscure race condition on access thread pool initialization
BUG: Updating FDFImageIO remote module
Christopher Mullins (15):
COMP: Allows latex to compile for ITKSoftwareGuide
COMP: Allows latex to compile for ITKSoftwareGuide
COMP: Wrap MeshBase templates
COMP: Wrap MeshBase templates
COMP: Fix warning in BlockMatchingImageFilter
STYLE: Line lengths in examples should be no longer than 80 chars.
COMP: Wrap the remaining MeshBase and MeshToMeshFilter types.
COMP: Fix LaTeX warnings.
STYLE: Fix formatting/punctuation errors.
STYLE: Formatting and punctuation fixes.
DOC: Edits for Book 2 Chapter 1 documentation in the Examples.
DOC: Edits for book 2 chapter 2.
DOC: More chapter 2 edits
DOC: Book 2 Chapter 3 edits (part 1)
DOC: book 2 chapter 4 Segmentation edits
Danny Perry (2):
BUG: adding test for vnl_sparse_matrix::mult()
BUG: size of q buffer should actually be (this->rows())*pcols.
David T. Chen (1):
DOC: Fixed HistogramThresholdImageFitler
Dirk Padfield (1):
BUG: Corrected processing of last sigma
GCC-XML Upstream (1):
ENH: pygccxml v1.6.2 (reduced)
Gert Wollny (1):
COMP: Fix SSE2 build errors with WrapITK on GCC 4.9. (ForRelease)
Girish Mallya (1):
BUG: Tests added for BinaryImageToLabelMapFilter for single-row images.
Hans Johnson (24):
COMP: Add tolerance for comparing floating point
PERF: Remove non-threadable algorithm components
COMP: Add tolerance for comparing floating point
PERF: Remove non-threadable algorithm components
PERF: Remove large foot print of PDF derivatives.
PERF: Revert Remove large foot print of PDF derivatives.
STYLE: Test against almost equal for floating point values
STYLE: Non-exact floating point testing
PERF: Distribute initialization per thread buffers
ENH: Remove unnecessary mutable qualifier.
STYLE: Remove comment with no meaning.
ENH: Moved accumlator logic to main MI class
ENH: Allow staggering of accumulations per thread.
PERF: Zero reset thread buffers during finalize
BUG: Syntax error in comment
PERF: Add non-blocking mutex locking.
ENH: Use TryLock minimize thread stalls
BUG: ThreadedIndexedContainerPartitioner is inclusive
STYLE: Remove include_regular_expression from Examples
BUG: Demonstrate Inv(Inv(T)) != T
BUG: Ensure Inv(Inv(T)) == T for transforms
COMP: Valgrind detects uninitialized memory read
COMP: Missing required base class API component
ENH: Expand interface for selecting threadpool
Ismael Belghiti (1):
DOC: Spelling Error in PatchBasedDenoisingBaseImageFilter
Jim Miller (1):
STYLE: Removing what appears to be a temporary file
Johan Andruejol (1):
ENH: Fix normalization for null vectors and return the norm
Jon Haitz Legarreta (1):
ENH: New test for itkLabelShapeOpeningImageFilter
Kent Williams (9):
COMP: use find_package(VTK COMPONENTS) to specify just needed
VTK Components
BUG: ImageSources/test/CMakeLists.txt incorrect library var reference
COMP: Fix coverity defects related to RegistrationV4 examples
COMP: silence warning of vnl_vector_fixed_ref::assert_size
COMP: Fix various Coverity warnings
COMP: Fix a typo in an error message print statement.
COMP: itk::Command-derived class used pointless dynamic_cast.
PERF: Don't recompute InternalInverse repeatedly
COMP: Correct orientation/spacing for Philips MultiFrame
Mark Hiner (2):
ENH: Update SCIFIO remote module hash
BUG: Fix duplicate variables in Windows
Matthew McCormick (105):
DOC: Fix itkSetGetDecoratedInputMacro Doxygen macro.
ENH: Move FFTComplexToComplexImageFilter out of Review.
ENH: Add VnlComplexToComplexFFTImageFilter.
BUG: Use fixed seed for Vnl FFT tests for repeatibility.
ENH: Bump CMakeLists.txt version to 4.7.0.
BUG: ArchiveTestingData.py future imports must occur at the beginning.
BUG: Do not run vnl_test_na with broken libc++.
DOC: Remove Image2.cxx reference from Book 2.
DOC: Fix Software Guide page overruns in IterativeClosestPoint3.cxx.
DOC: Remove references to Book 1 sections from Book 2.
DOC: Make BinaryThresholdImageFilter not floating.
DOC: Fix Software Guide figure caption for FlipImageFilter.
DOC: Avoid duplicate figure description in ResampleImageFilter2.cxx.
DOC: Remove duplicate figure in
LaplacianRecursiveGaussianImageFilter2.cxx.
DOC: ImageRandomConstIteratorWithIndex table reference.
DOC: Fix Software Guide page overruns in IterativeClosestPoint{1,2}.cxx.
DOC: Remove duplicate text in LaplacianRecursiveGaussian example.
BUG: Uninitialized m_TransformDirection in ComplexToComplexFFTImageFilter.
BUG: Fix offset[2] in PointSetToSpatialObjectDemonsRegistrationTest.
STYLE: Fix style in VoronoiDiagram2D.
BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.
BUG: Bump GCCXML to 2014-08-06.
BUG: Remove unused m_{SplitEpsilon,SigmoidPrimeOffset}.
BUG: Fix Win MultiThreader check for successful process creation.
BUG: Fix VTKPolyDataMeshIO writing for 2D second rank tensor.
COMP: Fix ImageRegistration8RegisteredSlice.png baseline name.
DOC: itk::statistics -> itk::Statistics.
COMP: Fix transform type for ITKv3/IterativeClosestPoint2.
BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.
COMP: Improve const correctness of GradientRecursiveGaussianImageFilter.
BUG: Call clear instead of empty on PatchBasedDenoising EmptyCaches().
BUG: Fix Size() in ImageToListSampleAdaptor for VectorImage's.
COMP: ThreadJob NULL not defined.
BUG: Fix alpha assignment for RGBA TIFF.
COMP: Remove unused typedefs in LevelSetsv4Visualization.
COMP: Remove unused typedef's in VtkGlue.
ENH: Mark BSplineWarping2Test as RUNS_LONG.
BUG: Fix Nifti IO read with large images.
COMP: Remove call for non-existent variable in Nifti debugging.
BUG: Close the file on Read and Write in HDF5TransformIO.
BUG: Remove InsightLegacy test code from TransformHDF5Test.
ENH: Add {Set,Get}TransformIO for TransformFile{Reader,Writer}.
STYLE: Use SeriesUIDContainerType and FileNamesContainerType
ENH: Allow specification of orthogonality tolerance in rigid transforms.
BUG: TransformFileReader does not clear its TransformList.
BUG: Prevent dangling pointer in HDF5TransformIO.
COMP: Do not use _stat64 with MinGW-32.
BUG: Improve thread-safety and performance of
PCAShapeSignedDistanceFunction.
DOC: itk::statistics -> itk::Statistics.
DOC: Remove duplicate text in LaplacianRecursiveGaussian example.
DOC: Fix Software Guide page overruns in IterativeClosestPoint{1,2}.cxx.
COMP: Address LaplacianDeformation Doxygen warnings.
BUG: TransformFileReader does not clear its TransformList.
BUG: Prevent dangling pointer in HDF5TransformIO.
COMP: Fix missing prefix in ITKv3ImageRegistration20Test.
BUG: Do not return SmartPointers in TimeVaryingVelocityFieldTransform
COMP: Do not wrap the FixedArray of Image SmartPointer's.
COMP: Add missing wrapping for TransformIOBaseTemplate.
COMP: Mark DeformableRegistration6Test as RUNS_LONG.
STYLE: Improve style in BinaryImageToLabelMapFilter.
BUG: Fix BinaryImageToLabelMapFilter on 1D image.
ENH: Improve precision of the joint PDF sum
BUG: Fix BinShrinkImageFilter for different input/output image types.
COMP: Fix transform type for ITKv3/IterativeClosestPoint2.
BUG: Use -py3 when building wrapping for Python 3.
COMP: Add missing wrapping for TransformIOBaseTemplate.
DOC: Improve ImageRegistration4 grammar.
ENH: Add IOTransformDCMTK Remote module.
BUG: gdcm::StringFilter recognizes backslash delimiter.
DOC: Add migration guide for GDCM Rescale slope intercept apply on write.
COMP: Remove unused typedef's in GPU code.
STYLE: Improve style of HoughTransform2DLinesImageFilter example.
COMP: Use ConceptChecking for IterativeInverse dimension check.
COMP: Wrap TransformIOBaseTemplate for const SmartPointer.
COMP: Add warning exceptions for third party pcre, swig, gccxml.
ENH: Bump ITK version to 4.6.1.
BUG: Add missing ITK_OVERRIDE to ITKImageeSources module.
BUG: Remove GaussianImageSource members shadowing GenerateImageSource.
STYLE: Style fixes to ITKImageSources module.
BUG: GaussianSpatialFunction and GaborImageSource use SpacePrecisionType.
BUG: Do not perform itk_download_attempt_check when not building ITK.
DOC: Update GDCMImageIO rescale slope intercept doc.
BUG: Only register requestion IO COMPONENT modules.
BUG: Fix wrapping .i, .idx CMake dependencies.
COMP: Add VTK Python module when wrapping ITKVtkGlue.
STYLE: Remove NULL definition in itkVoronoiDiagram2DGenerator.
STYLE: VoronoiDiagram2DGenerator defines a VoronoiDiagramType typedef.
COMP: Add missing VTK module dependency for LevelSetsv4Visualization.
BUG: By default, do not create any fixed parameters.
STYLE: Remove trivial method comments in itkTransform.hxx.
BUG: PolylineMask Filter's GenerateData is protected / virtual.
ENH: Add HigherOrderAccurateGradient Module.
BUG: Use input RequestedRegion Index in SliceBySliceImageFilter internal.
COMP: Remove extra semi-colon, variable scope in DCMTKFileReader.
STYLE: Style fixes for Transform classes.
DOC: Increase Doxygen LOOKUP_CACHE_SIZE.
BUG: MatrixOffsetTransformBase::GetFixedParameters not thread safe.
DOC: Index Wiki examples with Doxygen.
COMP: Bump SphinxExamples remote module.
DOC: Index Sphinx examples in Doxygen.
COMP: Remove old java examples.
COMP: Remove duplicate DiffusionTensor3DReconstruction example reference.
COMP: Address GradientAnisotropicDiffusionImageFilter example settings.
COMP: Bump Sphinx Examples remote.
COMP: Bump WikiExamples remote.
MetaIO Maintainers (1):
MetaIO (reduced)
Michka Popoff (40):
ENH: Fixes for python 3 support
BUG: Add VTK_VERSION for older VTK versions
BUG: Improve SWIG version check
COMP: Add wrapping for ThreadPool and ThreadJob
COMP: Remove unimplemented DestroyPool method
COMP: Fix itkVnlComplexToComplexFFTImageFilter wrapping
COMP: Do not hide pygccxml warnings
ENH: Update links in readme file
BUG: Improve SWIG version check
BUG: Add VTK_VERSION for older VTK versions
STYLE: Remove trailing whitespaces
STYLE: Set ITK_USE_SYTEM_ZLIB and ITK_USE_SYTEM_SZIP
BUG: Fix memory leak in MetaImageIO after exception
ENH: Add script to update pygccxml from upstream
BUG: Update VTK minimum version (for release)
BUG: Fix memory leak in MetaImageIO after exception
ENH: Remove Sun OS compatibility for the wrappings
COMP: Fix for conversion to non-pointer like type warning
STYLE: LabelObject style
DOC: Remove broken link from LabelObject class description
ENH: Do not setup the python tests if not asked
ENH: Add new GetTypes() and GetTypesAsList() methods to the template class
COMP: Fix CMP0054 warnings in wrappings
STYLE: Remove old cmake < 2.8.4 specific code
STYLE: Remove old cmake < 2.8.5 specific code
ENH: Update to PCRE 8.36
COMP: Refactor Wrapping setup and fix legacy warnings
ENH: Add wrapping configuration to ITKConfig.cmake
STYLE: Some minor code cleanup in the wrapping setup
DOC: Fix typo in RelabelComponentImageFilter
ENH: Deprecate VectorResampleImageFilter
DOC: Add migration guide for ::Zero and ::One
ENH: Deprecate ::Zero and ::One
ENH: Add option to disable sorting by size in
itkRelabelComponentImageFilter
ENH: Add Vector and RGB wrapping to linear interpolator
STYLE: Remove SORT macro in wrappings
COMP: Fix warning for InterpolateImageFunction wrapping
COMP: Add a check for Blocks in GPU module
COMP: Bump SCIFIO to fix test build warnings
COMP: Fix wrapping of itkImageFunctionBase
Nick Tustison (7):
BUG: Need to explicitly specify spline order.
ENH: Initializing the transform center.
BUG: Need to check the dynamic cast before any calls.
ENH: Adding modifications for point set metrics.
BUG: Need to specify TInternalComputationValueType for default metric.
ENH: Adding sparse points to B-spline field estimate.
BUG: Uninitialized variables.
Richard Beare (1):
ENH: Include TIFF tags in the MetaDataDictionary
Taylor Braun-Jones (1):
BUG: Fix SliceBySliceImageFilter doesn't propagate information internally
Umang B (1):
ENH: Use thread pool to dispatch multithreading tasks
Vivien Delmon (2):
BUG: ExtractImageFilter::CollapseToSubMatrix fix
ENH: Add a test on extracted directions in CollapseToSubMatrix mode
Vladimir S. FONOV (1):
BUG: Fixing incorrect MINC style inverse transform
ITK Sphinx Examples Changelog
-----------------------------------------------------
Arnaud Gelas (12):
add one example to translate one itk::Image
add PasteImageFilter example
fix path in ArchiveBinaryData.py.in
BUG: error when TEST_IMAGE_PREFIX was used
fix broken links as detected by linkcheck
add example for PermuteAxesImageFilter
Add one example to apply an affine transform given homogeneous matrix
Add one example to multiply 2 images
use ITK 4.6.1 for superbuild
update breathe to 3.1.0
Add one example to generate slices from volume
Add one example about RegionOfInterestImageFilter
Brad King (1):
setup-hooks: Create .git hooks directory if necessary
Matt McCormick (15):
ENH: Bump ITK Superbuild tag to 4.6.0.
BUG: Fix ConvertAnITKGrayScaleImageToCVMat compare_to_baseline.
COMP: Remove breathe link to ConstantPadImageFilter.
BUG: Fix figure path for Iterative Hole Filling.
BUG: Evolution.gif needs to be ..only:: html
COMP: Content not permitted in image:: directive.
BUG: Require CMake 2.8.6 in CreateNewExample template.
BUG: Update CreateNewExample.py for new compare_to_baseline syntax.
COMP: Fix ITKMathematicalMorphology COMPONENT dependency.
COMP: Fix build as a Remote module.
COMP: Fix fresh configuration as an ITK module.
COMP: Fix configuration ITK_WRAP_PYTHON is not defined.
BUG: Annotate ReadUnknownImageType component type correctly.
ENH: Bump Superbuild VTK version to 6.1.0.
ENH: Bump Superbuild ITK version to 4.7.0.
Michka Popoff (15):
COMP: Fix failing setup of SegmentBloodVessels example
STYLE: Update title for Apply Affine Transform example
ENH: Add GeodesicActiveContourLevelSetImageFilter example
COMP: Fix failing MultiplyTwoImagesTestBaselineComparison test
COMP: Add images to the MultiplyTwoImages documentation
COMP: Fix and improve ForwardFFTExample
COMP: Fix Multiply two images output
COMP: Update all cmake versions to 2.8.6
COMP: Fix MultiplyTwoImagesTestBaselineComparison
ENH: Add infrastructure for Python tests
ENH: Add example on how to resample a RGB image
BUG: Add missing images to ResampleAVectorImage documentation
COMP: Fix path for favicon
COMP: Fix for CleanQuadEdgeMesh documentation
BUG: Add missing semicolon to example
ITK Software Guide Changelog
-------------------------------------------
Ali Ghayoor (4):
ENH: Part one of converting Registration chapter to ITKv4
ENH: Part two of converting Registration chapter to ITKv4
ENH: Part three of converting Registration chapter to ITKv4
DOC: Revise the registration chapter
Christopher Mullins (16):
COMP: Use RegistrationITKv3 examples with ITKv3_COMPATIBILITY
STYLE: Use minted to highlight code syntax
DOC: Add instructions for using ITK from python
COMP: Sort and run the examples topologically.
COMP: add_custom_command no longer takes SOURCE parameter
STYLE: Fix python indentation
COMP: BuildTexFiles target should depend on SoftwareGuideExamples
COMP: Update the .eps generation command to use the OUTPUT signature.
STYLE: Fix quotes.
DOC: Language edits mostly from Book 2
ENH: Only flip the images we want to flip
BUG: Figure overlaps text in 4.3.
DOC: More language fixes, use minted instead of code tags.
STYLE: Put a new line before code blocks
STYLE: Fix margin problems with filenames and floating figure overlaps
STYLE: Change margins using the geometry package.
Hans Johnson (1):
ENH: Bring ITK code closer to the 4.7 release code
Matt McCormick (25):
ENH: Pass PDF_QUALITY_LEVEL in superbuild.
BUG: Remove unused RunExamples.py imports.
ENH: Reduce verbosity of RunExamples.py.
BUG: Do not include RegistrationITKv4 example sources in the build.
BUG: Fix caption on Confidence Connectened on BrainWeb figures.
BUG: Bump the ITK superbuild for LaTeX fixes.
ENH: Add new ISBN numbers.
DOC: CDash has replaced Dart.
DOC: itk::statistics -> itk::Statistics.
ENH: Update ITK logo.
STYLE: Remove box around CC logo.
DOC: Document instructions for building from the Docker image.
DOC: Docker build instruction improvements.
ENH: New path for starting the docker environment.
ENH: Change paper size.
COMP: Improve arguments for GradientAnisotropicDiffusionImageFilter.
ENH: Bump ITK Superbuild version to 2014-12-03.
BUG: Add flags for PDF_QUALITY_LEVEL STREQUAL ""
ENH: Add contributors for print release.
ENH: Upsample when building with PDF_QUALITY_LEVEL "Printer".
BUG: Specify cc-by logo size explicitly.
BUG: Use original ITK configuration images.
ENH: Use file(COPY to copy over .eps images.
ENH: Margin tightening.
ENH: Bump ITK ExternalProject to v4.7.0.
Michka Popoff (5):
ENH: Use the new licence file for MetaIO
DOC: Fixes for the ITK 4.7 book
DOC: Fixes for book1, part1, chapter 2
DOC: Fixes and improvements for Book 1, chapter 3
DOC: Minor fixes for Book 1, Chapter 4
Sandy McKenzie (1):
STYLE: Add new line before code block
ITKApps Changelog
---------------------------
Bill Lorensen (1):
COMP: Update CTEST_DROP_SITE
Matt McCormick (4):
COMP: Use ::ZeroValue() instead of ::Zero.
COMP: Patch FLTK for build against newer freetype.
COMP: Address %d type for VolviewPlugins.
ENH: Bump ITK Superbuild version to v4.7.0.
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