[ITK] [ITK-dev] Exception in itk::ResampleImageFilter multithreaded part after ITK migration from 3.20.1 to 4.6.1

Simon ESNEAULT simon.esneault at gmail.com
Wed Dec 3 09:22:29 EST 2014 

Hi Bradley,

Thanks for your answer. You're right it can not be the export otherwise it
would not link.
Plus, I can now reproduce the exact same exception at runtime on OSX
(10.10, XCode 6) with our framework updated and build against ITK 4.6.1

I've search all copies of ResampleFilter and the only one left on the
computers (Win and OSX) are the one from ITK 4.6.1. It must be something
else !

Here is what we do with cmake :

set( Itk_INCLUDE_DIR
${CMAKE_BINARY_DIR}/../externals/ITK-4.6.1/${OS_NAME}/include )
set( Itk_LIBRARY_DIR
${CMAKE_BINARY_DIR}/../externals/ITK-4.6.1/${OS_NAME}/lib/${CMAKE_BUILD_TYPE}
)
set( Itk_LIBRARIES
ITKBiasCorrection-4.6
ITKBioCell-4.6
ITKCommon-4.6
ITKDICOMParser-4.6
itkdouble-conversion-4.6
ITKEXPAT-4.6
ITKFEM-4.6
itkgdcmCommon-4.6
itkgdcmDICT-4.6
itkgdcmDSED-4.6
itkgdcmIOD-4.6
itkgdcmjpeg12-4.6
itkgdcmjpeg16-4.6
itkgdcmjpeg8-4.6
itkgdcmMSFF-4.6
ITKgiftiio-4.6
itkhdf5-4.6
itkhdf5_cpp-4.6
ITKIOBioRad-4.6
ITKIOBMP-4.6
ITKIOCSV-4.6
ITKIOGDCM-4.6
ITKIOGE-4.6
ITKIOGIPL-4.6
ITKIOHDF5-4.6
ITKIOImageBase-4.6
ITKIOIPL-4.6
ITKIOJPEG-4.6
ITKIOLSM-4.6
ITKIOMesh-4.6
ITKIOMeta-4.6
ITKIOMRC-4.6
ITKIONIFTI-4.6
ITKIONRRD-4.6
ITKIOPNG-4.6
ITKIOSiemens-4.6
ITKIOSpatialObjects-4.6
ITKIOStimulate-4.6
ITKIOTIFF-4.6
ITKIOTransformBase-4.6
ITKIOTransformHDF5-4.6
ITKIOTransformInsightLegacy-4.6
ITKIOTransformMatlab-4.6
ITKIOVTK-4.6
ITKIOXML-4.6
itkjpeg-4.6
ITKKLMRegionGrowing-4.6
ITKLabelMap-4.6
ITKMesh-4.6
ITKMetaIO-4.6
itkNetlibSlatec-4.6
ITKniftiio-4.6
ITKNrrdIO-4.6
itkopenjpeg-4.6
ITKOptimizers-4.6
ITKOptimizersv4-4.6
ITKPath-4.6
itkpng-4.6
ITKPolynomials-4.6
ITKQuadEdgeMesh-4.6
ITKSpatialObjects-4.6
ITKStatistics-4.6
itksys-4.6
itktiff-4.6
itkv3p_lsqr-4.6
itkv3p_netlib-4.6
itkvcl-4.6
ITKVideoCore-4.6
ITKVideoIO-4.6
itkvnl-4.6
ITKVNLInstantiation-4.6
itkvnl_algo-4.6
ITKVTK-4.6
ITKWatersheds-4.6
itkzlib-4.6
ITKznz-4.6
)

And later on,
include_directories( ${Itk_INCLUDE_DIR} )
link_directories( ${Itk_LIBRARY_DIR} )
target_link_libraries( my_exec ${Itk_LIBRARIES} )
or target_link_libraries( my_lib ${Itk_LIBRARIES} )

After that we Register Itk factories as stated in the first mail.
Is this sufficient?
Can this be responsible of such a behavior ?

Simon


2014-12-02 15:45 GMT+01:00 Bradley Lowekamp <blowekamp at mail.nih.gov>:

> Hello Simon,
>
> If you don't have your exports correct it'd likely result in a link error.
>
> Given the error message you report, it sounds like you are using an old
> version of the ResampleFilter. I'd look into seeing if there are old copies
> of ITK 3.20 laying around that may be included in your project. You can not
> use mix symbols and includes from different version of ITK.
>
> Brad
>
> On Dec 2, 2014, at 4:51 AM, Simon ESNEAULT <simon.esneault at gmail.com>
> wrote:
>
> Hi Bill,
>
> Thanks for your reply. I have downloaded and executed succesfully the
> Upsampling example (
> http://itk.org/Wiki/ITK/Examples/ImageProcessing/Upsampling), using the
> version of ITK (4.6.1) we used in the framework.
>
> It appears our problem is probably related with our framework
> architecture, and some dll import/export on windows. We wrapped all our ITK
> code in a library WrapItk.dll. And there are some others libraries, all of
> them can make use of native ITK code or wrapped ITK code. This used to work
> fine with ITK 3.20.1, but it's seems broken in 4.6.1.
>
> Not only the Resample filter raise an exception but all the MultiThreaded
> filter in ITK. When debugging, we go through
> itk::ResampleImageFilter::BeforeThreadedGenerateData() just fine, and
> somehow, when ThreadedGenerateData() is called we fall back in the mother
> class ImageSource method, hence raising the exception.
>
> Anyone know how to use properly ITK code with multiple DLL's on windows ?
> ie having an image loaded with ITK code from one DLL, and some ITK filter
> executed in another DLL without trouble ?
> We use that sort of mechanism to export functions properly between DLLs.
> #if SOME_DLL_DEFINITIONS
> #define MY_EXPORT __declspec(dllexport)
> #else
> #define MY_EXPORT __declspec(dllimport)
>
> I will try to sum things up in scheme  if that can help ...
>
> Thanks
> Simon
>
>
> 2014-12-01 14:51 GMT+01:00 Bill Lorensen <bill.lorensen at gmail.com>:
>
>> Very strange.
>>
>> Could you try building and running this example:
>> http://itk.org/Wiki/ITK/Examples/ImageProcessing/ResampleImageFilter
>>
>> Bill
>>
>> On Mon, Dec 1, 2014 at 7:53 AM, Simon ESNEAULT <simon.esneault at gmail.com>
>> wrote:
>> > Hello ITK community
>> >
>> > After the migration from ITK 3.20.1 to ITK 4.6.1, I'm getting a runtime
>> > exception when using itk::ResampleImageFilter in our framework. The
>> output
>> > looks like this :
>> >
>> > Problem during Resample filtering:
>> >
>> D:\Dev\DevCpp-Qt5\cmake-externals\ITK\src\Modules\Core\Common\src\itkMultiThreader.cxx:358:
>> > itk::ERROR: MultiThreader(31CAAD18): Exception occurred during
>> > SingleMethodExecute
>> > c:\dev\Dev_qt5\externals\itk-4.6.1\win32\include\itkImageSource.hxx:267:
>> > itk::ERROR: ResampleImageFilter(31AC2E90): Subclass should override this
>> > method!!!
>> > The signature of ThreadedGenerateData() has been changed in ITK v4 to
>> use
>> > the new ThreadIdType.
>> > ResampleImageFilter::ThreadedGenerateData() might need to be updated to
>> used
>> > it.
>> >
>> > That is weird, because the itkResampleImageFilter is the one delivered
>> with
>> > ITK 4.6.1, so it must have followed the API changed ...
>> >
>> > The context is :
>> > Visual Studio 2013 community, 32 bit build, ITK build in shared library
>> > mode. That's quite a big project, with VTK, Qt, OpenCV, DCMTK, zlib ...
>> > I'm not using cmake in the usual way (ie no find_package(ITK)
>> > include(${ITK_USE_FILE}) ) but we list the libraries and includes. I
>> know
>> > there are some factories to register in that case, we're doing this in
>> the
>> > main.cpp :
>> > itk::TransformFactoryBase::RegisterDefaultTransforms();
>> > itk::PNGImageIOFactory::RegisterOneFactory();
>> > itk::MetaImageIOFactory::RegisterOneFactory();
>> > itk::NrrdImageIOFactory::RegisterOneFactory();
>> >
>> > Am I missing some others factories to register in order to run properly
>> the
>> > resampleImageFilter ?
>> > Anyone else had a similar runtime exception with a native ITK filte, or
>> know
>> > what would raise such an exception ?
>> >
>> > Thanks
>> >
>> > --
>> > ------------------------------------------------------------------
>> > Simon Esneault
>> > ------------------------------------------------------------------
>> >
>> > _______________________________________________
>> > Powered by www.kitware.com
>> >
>> > Visit other Kitware open-source projects at
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>> >
>>
>>
>>
>> --
>> Unpaid intern in BillsBasement at noware dot com
>>
>
>
>
> --
> ------------------------------------------------------------------
> Simon Esneault
> ------------------------------------------------------------------
>  _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
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>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
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