[ITK] simple question about Volume From Slices

[Fitze Thomas (fitz)]

Hi Chiara,

One option i had good results with, is creating a surface mesh from your volume and do a surface reconstruction. There are different reconstruction methods, which one to use depends or your use case. Poisson reconstruction would be a good starting point.

To extract and reconstruct the surface, you could either use VTK (1) or some tools to do the extraction (2) and reconstruction (3).

(1) http://www.vtkjournal.org/browse/publication/718
(2) http://mitk.org/wiki/Downloads
(3) http://meshlab.sourceforge.net/

Cheers,
Thomas

On 02.12.2014, at 10:40, Chiara Magliaro <chiara.magliaro at googlemail.com<mailto:chiara.magliaro at googlemail.com>> wrote:

Hi all,

I'm new of Itk and C++ programming language.
I tryed to use the Volume From Slices example (link: http://www.itk.org/Wiki/ITK/Examples/IO/VolumeFromSlices)
The script works well, but the 3d image obtained is not smooth. In fact, I can discriminate the contourn of the 2d images glued together, as you can see in pre.png. I tryed with an anti alias filter (fig. post.png), but i "lost" the shape of my cell.
It is not a probem of registration of the stack (the images are acquired with  a confocal microscope, so they are just aligned)
How can I have a 3d image more suitable for the visualization?
Thanks in advance

Chiara Magliaro


<pre.png><post.png>_______________________________________________
Community mailing list
Community at itk.org<mailto:Community at itk.org>
http://public.kitware.com/mailman/listinfo/community

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://public.kitware.com/pipermail/community/attachments/20141202/e8034fb0/attachment.html>