[ITK] [ITK-users] itkSmoothingQuadEdgeMeshFilter Help!!

Thu Aug 7 06:09:50 EDT 2014

Hi Arnaud,

Thanks for your reply and valuable suggestions.

Number of points in my input mesh are 78928.In my pipeline I am already
cleaning the polydata using vtkCleanPolyData filter.I will check the speed
improvement and results with delaunay conforming turned OFF.

Thank you

On Thu, Aug 7, 2014 at 2:22 PM, Arnaud Gelas <arnaudgelas at gmail.com> wrote:

> Hi Malik,
>
> First of all, I would recommend using MeshFileReader instead of
> VTKPolyDataReader (I guess VTKPolyDataReader will be deprecated in near
> future?).
>
> Regarding now the smoothing procedure in itself. This class definitively
> misses some documentation and I will be adding some in the next few days
> (mainly extracted from the corresponding insight journal).
>
> At the end of each iteration, when the delaunay conforming flag is turned
> ON, the conformation is performed. So depending on the mesh configuration,
> mesh size and number of iterations, it can take ages…
> How large is your input mesh (number of points)?
>
> You can also check results, by running first a smoothing without delaunay
> conforming, then apply a delaunay conforming on the output. Results won't
> be as nice, but you should get significant speed improvement.
> Another possibility is to first do a clean poly data in vtk, with a small
> threshold to remove small edges in the input meshes (which results in lots
> of edge flipping after smoothing).
>
> HTH
> Arnaud
>
>
> On Aug 6, 2014, at 10:42 AM, Mallikarjun K <mallikarjun49 at gmail.com>
> wrote:
>
> Hi All,
>
> Can anyone suggest me if anything wrong I am doing in this below pipeline
> ,Where I used itkVtkPolydataReader to convert vtk Surface polydata to Itk
> QuadedgeMesh. Execution loop is being hung up for sometime(4 to 5 mins in
> release mode) at itkVtkPolydataReader .
>
>
> ////
>
> typedef itk::QuadEdgeMeshTraits<double, 3,double, double, double,double >
> qetraits;
>
> typedef itk::QuadEdgeMesh< vtkFloatingPointType, 3,qetraits > MeshType;
>
> itk::OnesMatrixCoefficients< MeshType > coeff0;
>
> typedef itk::VTKPolyDataReader< MeshType >VTKPolyDataReaderType;
> //typedef itk::VTKPolyDataWriter< MeshType >VTKPolyDataWriterType;
>
> //VTKPolyDataWriterType::Pointer
> ItkToVtkWriter=VTKPolyDataWriterType::New();
> VTKPolyDataReaderType::Pointer VtkToItkReader=VTKPolyDataReaderType::New();
>
> VtkToItkReader->SetFileName("abc.vtk");
> VtkToItkReader->Update();
>
> typedef itk::SmoothingQuadEdgeMeshFilter< MeshType, MeshType >
> SmoothingQuadEdgeMeshFilter;
>
>  SmoothingQuadEdgeMeshFilter::Pointer QEMeshSmoother =
> SmoothingQuadEdgeMeshFilter::New();
>
> QEMeshSmoother->SetInput(VtkToItkReader->GetOutPut());
> QEMeshSmoother->SetNumberOfIterations(5 );
> QEMeshSmoother->SetRelaxationFactor( 0.5 );
> QEMeshSmoother->SetDelaunayConforming(true );
> QEMeshSmoother->SetCoefficientsMethod( &coeff0 );
>  QEMeshSmoother->Update();
>
> ////
>
>
> On Fri, Aug 1, 2014 at 4:36 PM, Mallikarjun K <mallikarjun49 at gmail.com>
> wrote:
>
>> Thanks Bill for your answer.
>>
>> The reason I am using this pipeline is that SmoothingQEMeshFilter has an
>> additional parameter for smoothing which is delaunay conforming which helps
>> to optimize aspect ratio of triangles while smoothing and thus produces
>> better output.Is there anything similar filter in the vtk pipeline.I used
>> vtkWindowedSincPolydatafilter which is not giving the output as good as
>> QEMeshSmoothing filter.
>>
>> Thanks for your help
>>
>>
>> On Thu, Jul 31, 2014 at 5:14 PM, Bill Lorensen <bill.lorensen at gmail.com>
>> wrote:
>>
>>> If you have it in vtk, I suggest using the vtk pipeline to smooth the
>>> data.
>>>
>>> On Thu, Jul 31, 2014 at 1:35 AM, Mallikarjun K <mallikarjun49 at gmail.com>
>>> wrote:
>>> > Hi Bill,
>>> > Thanks for the replay.
>>> >
>>> > Yes,I built both ITK and my app with Release ,I forgot to mention it
>>> in the
>>> > previous post.Actually the data set is the output of
>>> > vtkDiscreteMarchingCubes algorithm(around 5MB) and need to smooth .I
>>> saved
>>> > this marching cube's output as .vtk file and read it using
>>> > itkVTKPolyDataReader and then I am giving this reader's output to
>>> > itkSmoothingQuadEdgeMeshFilter's input.
>>> >
>>> > I checked the execution time of each step in the pipeline ,after
>>> > SmothingQEMeshFilter has got it's input ,it is taking time to process
>>> the
>>> > data.
>>> >
>>> > Thank you
>>> >
>>> >
>>> >
>>> > On Wed, Jul 30, 2014 at 9:29 PM, Bill Lorensen <
>>> bill.lorensen at gmail.com>
>>> > wrote:
>>> >>
>>> >> First, make sure you are building ITK and your app with Release. A
>>> >> Debug build can be 10-50 times slower.
>>> >>
>>> >>
>>> >> On Wed, Jul 30, 2014 at 10:18 AM, Mallikarjun K <
>>> mallikarjun49 at gmail.com>
>>> >> wrote:
>>> >> > Hi All,
>>> >> > I am using itkSmoothingQuadEdgeMeshFilter for Surface Mesh
>>> >> > smoothing.This
>>> >> > filter is giving good results what I expected but taking more
>>> execution
>>> >> > time.can any one suggest me to reduce the execution time( multi
>>> >> > threading
>>> >> > or any parameters to add/remove )?
>>> >> >
>>> >> > Below is the code snippet
>>> >> > ///////
>>> >> > typedef itk::QuadEdgeMeshTraits<double, 3,double, double,
>>> double,double
>>> >> > >
>>> >> > qetraits;
>>> >> > typedef itk::QuadEdgeMesh< vtkFloatingPointType, 3,qetraits >
>>> MeshType;
>>> >> >
>>> >> > //typedef itk::QuadEdgeMesh< vtkFloatingPointType, 3 > MeshType;
>>> >> >
>>> >> > itk::OnesMatrixCoefficients< MeshType > coeff0;
>>> >> >
>>> >> > typedef itk::SmoothingQuadEdgeMeshFilter< MeshType, MeshType >
>>> >> > SmoothingQuadEdgeMeshFilter;
>>> >> >
>>> >> >     SmoothingQuadEdgeMeshFilter::Pointer QEMeshSmoother =
>>> >> > SmoothingQuadEdgeMeshFilter::New();
>>> >> >
>>> >> > QEMeshSmoother->SetInput("abc.vtk");
>>> >> > QEMeshSmoother->SetNumberOfIterations(5 );
>>> >> > QEMeshSmoother->SetRelaxationFactor( 0.5 );
>>> >> > QEMeshSmoother->SetDelaunayConforming(true );
>>> >> > QEMeshSmoother->SetCoefficientsMethod( &coeff0 );
>>> >> > QEMeshSmoother->Update();
>>> >> > ////
>>> >> >
>>> >> > --
>>> >> > Regards:
>>> >> > Mallik
>>> >> >
>>> >> >
>>> >> > _____________________________________
>>> >> > Powered by www.kitware.com
>>> >> >
>>> >> > Visit other Kitware open-source projects at
>>> >> > http://www.kitware.com/opensource/opensource.html
>>> >> >
>>> >> > Kitware offers ITK Training Courses, for more information visit:
>>> >> > http://www.kitware.com/products/protraining.php
>>> >> >
>>> >> > Please keep messages on-topic and check the ITK FAQ at:
>>> >> > http://www.itk.org/Wiki/ITK_FAQ
>>> >> >
>>> >> > Follow this link to subscribe/unsubscribe:
>>> >> > http://public.kitware.com/mailman/listinfo/insight-users
>>> >> >
>>> >>
>>> >>
>>> >>
>>> >> --
>>> >> Unpaid intern in BillsBasement at noware dot com
>>> >
>>> >
>>> >
>>> >
>>> > --
>>> > Regards:
>>> > Mallik
>>> >
>>>
>>>
>>>
>>> --
>>> Unpaid intern in BillsBasement at noware dot com
>>>
>>
>>
>>
>> --
>> *Regards:*
>> Mallik
>>
>>
>
>
> --
> *Regards:*
> Mallik
>
>  _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/insight-users
>
>
>

-- 
*Regards:*
Mallik
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://public.kitware.com/pipermail/community/attachments/20140807/6be9f679/attachment-0002.html>
-------------- next part --------------
_____________________________________
Powered by www.kitware.com

Visit other Kitware open-source projects at
http://www.kitware.com/opensource/opensource.html

Kitware offers ITK Training Courses, for more information visit:
http://www.kitware.com/products/protraining.php

Please keep messages on-topic and check the ITK FAQ at:
http://www.itk.org/Wiki/ITK_FAQ

Follow this link to subscribe/unsubscribe:
http://public.kitware.com/mailman/listinfo/insight-users