[ITK] [ITK-users] Simpleitk installation on Mac 10.9.2

[David Welch]

Hi Chao,

I can't solve your issue - you will need to Google the error and identify
which search hits pertain to your system.  Once you've identified the
culprit (or culprits), we can start looking at a solution.

Good luck!

Cheers,
Dave


On Wed, Apr 16, 2014 at 4:43 PM, Chao Wang <dynastywang1010 at gmail.com>wrote:

> Hi, Dave,
>
> I gave up building it by myself. For the binary installation on Mac, I did
> 'sudo easy_install SimplyITK'.
>
> I believe it is successfully installed. But when I entered python, it gave
> me an error like the above.
>
> Please direct me to where it can be solved.
>
> Thanks,
>
> Chao
>
>
> On Wed, Apr 16, 2014 at 2:28 PM, David Welch <david.m.welch at gmail.com>wrote:
>
>> Hi Chao,
>>
>> Let's keep this on the mailing list.  I assumed from your original
>> message you were trying to build with R wrapping, not Python.  That was
>> probably your original problem - just turn off R_WRAPPING (or whatever it
>> is in the CMake GUI).
>>
>> For your first error: if you Google "Fatal Python error:
>> PyThreadState_Get: no current thread" there are a TON of hits.  What have
>> you tried?
>>
>> Ubuntu is a different issue, so let's take it one OS at a time.
>>
>> Cheers,
>> Dave
>>
>>
>> On Wed, Apr 16, 2014 at 2:47 PM, Chao Wang <dynastywang1010 at gmail.com>wrote:
>>
>>> I also tried in ubuntu, after sudo easy_install SimpleITK, and import
>>> SimpleITK as sitk,
>>>
>>>
>>> Python still cannot find the package.
>>>
>>> Thanks,
>>>
>>> Chao
>>>
>>>
>>> On Wed, Apr 16, 2014 at 11:52 AM, Chao Wang <dynastywang1010 at gmail.com>wrote:
>>>
>>>>
>>>> Hi, David,
>>>>
>>>> I switched to binary install and it was successful, I hope.
>>>>
>>>> But, when I open python and tried to import SimpleITK as import
>>>> SimpleITK as sitk
>>>>
>>>> sitk
>>>>
>>>> Fatal Python error: PyThreadState_Get: no current thread
>>>>
>>>> Abort trap: 6
>>>>
>>>>
>>>>
>>>>
>>>> Process:         Python [90787]
>>>> Path:
>>>>  /Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
>>>> Identifier:      Python
>>>> Version:         2.7.3 (2.7.3)
>>>> Code Type:       X86-64 (Native)
>>>> Parent Process:  bash [90730]
>>>> Responsible:     Terminal [200]
>>>> User ID:         501
>>>>
>>>> Date/Time:       2014-04-16 11:51:19.463 -0700
>>>> OS Version:      Mac OS X 10.9.2 (13C64)
>>>> Report Version:  11
>>>> Anonymous UUID:  D20752B2-FC7D-334A-7483-EAC1C469DF11
>>>>
>>>> Sleep/Wake UUID: 619C0566-6D47-4938-8E49-BD544C13CF52
>>>>
>>>> Crashed Thread:  0  Dispatch queue: com.apple.main-thread
>>>>
>>>> Exception Type:  EXC_CRASH (SIGABRT)
>>>> Exception Codes: 0x0000000000000000, 0x0000000000000000
>>>>
>>>> Application Specific Information:
>>>> abort() called
>>>>
>>>>  I wonder if the path is wrong or something else happened?
>>>>
>>>>
>>>> Thanks,
>>>>
>>>>
>>>> Chao
>>>>
>>>> On Wed, Apr 16, 2014 at 9:37 AM, David Welch <david.m.welch at gmail.com>wrote:
>>>>
>>>>> Hi Chao,
>>>>>
>>>>> It looks like your path to the R framework is incorrect in your CMake
>>>>> build.  Can you email the values for R in your CMakeCache file?
>>>>>
>>>>> Cheers,
>>>>> Dave
>>>>>
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>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Chao Wang
>>>>
>>>
>>>
>>>
>>> --
>>> Chao Wang
>>>
>>
>>
>
>
> --
> Chao Wang
>
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