[ITK] [ITK-users] Simpleitk installation on Mac 10.9.2

[David Welch]

Hi Chao,

Let's keep this on the mailing list.  I assumed from your original message
you were trying to build with R wrapping, not Python.  That was probably
your original problem - just turn off R_WRAPPING (or whatever it is in the
CMake GUI).

For your first error: if you Google "Fatal Python error: PyThreadState_Get:
no current thread" there are a TON of hits.  What have you tried?

Ubuntu is a different issue, so let's take it one OS at a time.

Cheers,
Dave


On Wed, Apr 16, 2014 at 2:47 PM, Chao Wang <dynastywang1010 at gmail.com>wrote:

> I also tried in ubuntu, after sudo easy_install SimpleITK, and import
> SimpleITK as sitk,
>
>
> Python still cannot find the package.
>
> Thanks,
>
> Chao
>
>
> On Wed, Apr 16, 2014 at 11:52 AM, Chao Wang <dynastywang1010 at gmail.com>wrote:
>
>>
>> Hi, David,
>>
>> I switched to binary install and it was successful, I hope.
>>
>> But, when I open python and tried to import SimpleITK as import
>> SimpleITK as sitk
>>
>> sitk
>>
>> Fatal Python error: PyThreadState_Get: no current thread
>>
>> Abort trap: 6
>>
>>
>>
>>
>> Process:         Python [90787]
>> Path:
>>  /Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
>> Identifier:      Python
>> Version:         2.7.3 (2.7.3)
>> Code Type:       X86-64 (Native)
>> Parent Process:  bash [90730]
>> Responsible:     Terminal [200]
>> User ID:         501
>>
>> Date/Time:       2014-04-16 11:51:19.463 -0700
>> OS Version:      Mac OS X 10.9.2 (13C64)
>> Report Version:  11
>> Anonymous UUID:  D20752B2-FC7D-334A-7483-EAC1C469DF11
>>
>> Sleep/Wake UUID: 619C0566-6D47-4938-8E49-BD544C13CF52
>>
>> Crashed Thread:  0  Dispatch queue: com.apple.main-thread
>>
>> Exception Type:  EXC_CRASH (SIGABRT)
>> Exception Codes: 0x0000000000000000, 0x0000000000000000
>>
>> Application Specific Information:
>> abort() called
>>
>>  I wonder if the path is wrong or something else happened?
>>
>>
>> Thanks,
>>
>>
>> Chao
>>
>> On Wed, Apr 16, 2014 at 9:37 AM, David Welch <david.m.welch at gmail.com>wrote:
>>
>>> Hi Chao,
>>>
>>> It looks like your path to the R framework is incorrect in your CMake
>>> build.  Can you email the values for R in your CMakeCache file?
>>>
>>> Cheers,
>>> Dave
>>>
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>>
>>
>> --
>> Chao Wang
>>
>
>
>
> --
> Chao Wang
>
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