[ITK] SCIFIO throws exception

[Michael Meuli]

Hi Matt,

Thanks a lot.
I set JAVA_HOME to
"/home/michael/Colocalization/ITK-4.5.1-build/lib/jre/bin" and still
get the same error.

Thanks again,
Michael




On 7 April 2014 22:10, Matt McCormick <matt.mccormick at kitware.com> wrote:
> Hi Michael,
>
> Does it work with the JRE distributed with the module?  I do not think
> Java 8 has been tested yet.
>
> Thanks,
> Matt
>
> On Mon, Apr 7, 2014 at 3:34 PM, Michael Meuli <michael.meuli at gmail.com> wrote:
>> Hi,
>>
>> I'm trying to read the test image "single-channel.ome.tif" from
>> http://www.openmicroscopy.org/site/support/ome-model/ome-tiff/data.html
>> JAVA_HOME is set to "/usr/lib/jvm/java-8-oracle/jre/bin/java"
>> Running "SCIFIOTestDriver itkSCIFIOImageIOTest" gives me a very similar error.
>> I'm running Ubuntu 13.10 32bit with ITK-4.5.1
>>
>> Below is the text of the error message:
>>
>> Problem encoutered while reading image file :
>> /home/michael/Colocalization/Data/single-channel.ome.tif
>>
>> itk::ExceptionObject (0x8e283f0)
>> Location: "unknown"
>> File: /home/michael/Colocalization/ITK-4.5.1-build/Modules/Remote/SCIFIO/src/itkSCIFIOImageIO.cxx
>> Line: 408
>> Description: itk::ERROR: SCIFIOImageIO(0x8e27000): SCIFIOImageIO:
>> ITKReadImageInformation error:
>> Not a directory
>>
>>
>> Many thanks
>> Michael
>>
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