[ITK] [ITK-users] k-means on 12 bit data

Bradley Lowekamp blowekamp at mail.nih.gov
Tue Apr 1 13:30:52 EDT 2014


Hello,

If I recall correctly this filter uses a sample list for the computation [1]. I Would think that the algorithm may be more efficient with a histogram type sample container. I would suspect that you could reuse many of the building blocks for the current filter but with the generation of a histogram instead of the adaptor.

Hope that helps,
Brad

[1] https://github.com/InsightSoftwareConsortium/ITK/blob/master/Modules/Segmentation/Classifiers/include/itkScalarImageKmeansImageFilter.h#L96


On Apr 1, 2014, at 12:59 PM, Simon Alexander <skalexander at gmail.com> wrote:

> Hi,
> 
> I was using itk::ScalarImageKmeansImageFilter on some largish volumetric data, all unsigned 12 bit, and found it unusably slow for the particular task.
> 
> Is there an efficient k-means filter for constrained data ranges like this? 
> 
> For this use it should be computable a couple of orders of magnitude faster than the general method, so I'm just trying to avoid re-implementing if possible.
> 
> - Simon
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