[Cmb-users] CMB binary doesn't work on my RHEL6

[Robert Maynard]

On Wed, Feb 25, 2015 at 12:54 PM, Ondřej Čertík <ondrej.certik at gmail.com> wrote:
> On Wed, Feb 25, 2015 at 10:36 AM, Robert Maynard
> <robert.maynard at kitware.com> wrote:
>> On Wed, Feb 25, 2015 at 12:29 PM, Ondřej Čertík <ondrej.certik at gmail.com> wrote:
>>> Hi Andy, Robert and Robert,
>>>
>>> Thanks for the replies. Do you know when you will upload a new binary?
>>>
>>> In the meantime I tried to compile from source using
>>> https://github.com/Kitware/RGG.
>>> Once I figure this out, I'll add it to Hashdist
>>> (https://hashdist.github.io/). We actually have pretty much all the
>>> dependencies, except perhaps Remus, I'll add it in.
>>
>> Last year I wrote a hashstack recipe for most of cmb which can be
>> found at https://github.com/robertmaynard/hashstack/tree/cmb-profile/
>> , it does include Remus.
>
> I didn't know! Can I create a pull request from your branch?

I am hesitant to do a pull request as the branch is pretty old and the
version of our
 dependencies might be out of date in that branch. We should review the packages
that the branch adds and verify they are using the same version as the
SuperBuild
versions.cmake

>
>>
>>>
>>> Is my understanding correct, that if I want to use the superbuild (as
>>> a temporary solution before I add all the dependencies to Hashdist), I
>>> first do:
>>>
>>> cd superbuild
>>> cmake .
>>> make
>>>
>>> Do I need to install it afterwards and then somehow point the cmake to
>>> it from the root directory? Once I understand that, I'll be happy to
>>> improve the README with some instructions.
>>
>> Basically that is correct, but the superbuild will install everything
>> into <build_dir>/install/ (include/lib/bin).
>> So you should be able to add <build_dir>/install as a
>> CMAKE_PREFIX_PATH to find anything it has built.
>
> Ah I see, right. So it built a few packages and then failed with:
>
> -- Up-to-date: /local/certik/repos/RGG/superbuild/install/lib/cmake/qttesting/QtTestingTargets.cmake
> -- Installing: /local/certik/repos/RGG/superbuild/install/lib/cmake/qttesting/QtTestingTargets-noconfig.cmake
> [ 40%] Completed 'QtTesting'
> [ 42%] Built target QtTesting
> [ 48%] Built target boost
> [ 54%] Built target szip
> [ 60%] Built target hdf5
> [ 60%] Performing configure step for 'netcdf'
> Not searching for unused variables given on the command line.
> CMake Warning (dev) in CMakeLists.txt:
>   Syntax Warning in cmake code at
>
>     /local/certik/repos/RGG/superbuild/netcdf/src/netcdf/CMakeLists.txt:339:56
>
>   Argument not separated from preceding token by whitespace.
> This warning is for project developers.  Use -Wno-dev to suppress it.
>
> CMake Warning (dev) at CMakeLists.txt:78 (FIND_PACKAGE):
>   Syntax Warning in cmake code at
>
>     /local/certik/repos/RGG/superbuild/netcdf/src/netcdf/cmake/modules/FindMakeDist.cmake:202:40
>
>   Argument not separated from preceding token by whitespace.
> This warning is for project developers.  Use -Wno-dev to suppress it.
>
> -- Could NOT find CURL (missing:  CURL_LIBRARY CURL_INCLUDE_DIR)
> CMake Error at CMakeLists.txt:425 (MESSAGE):
>   DAP Support specified, CURL libraries are not found.
>
>
> -- Configuring incomplete, errors occurred!
> See also "/local/certik/repos/RGG/superbuild/netcdf/src/netcdf-build/CMakeFiles/CMakeOutput.log".
> See also "/local/certik/repos/RGG/superbuild/netcdf/src/netcdf-build/CMakeFiles/CMakeError.log".
> make[2]: *** [netcdf/src/netcdf-stamp/netcdf-configure] Error 1
> make[1]: *** [CMakeFiles/netcdf.dir/all] Error 2
> make: *** [all] Error 2
>
>
>
>
>
> It failed with Curl. I'll move over to your branch now, I know how to
> fix such problems in there if needed.
>

FYI the cmb superbuild and the RGG superbuild are actually different
projects. If you are building RGG I would stick with that superbuild
as the dependencies differ. It looks like the CMB superbuild has the
fixes for disabling DAP support but that wasn't ported to the RGG
superbuild.

> Ondrej