[CMake] CONFIGURE_FILE, Windows and Native vs CMake Paths

[Brian Davis]

>> Well, I don't think there's a way around it. But you can use a loop to do
it:

Ok good to know.

>> Another thing, though: Never, ever, configure a file into the source
tree. Doing so is a recipe for disaster...

Curious as to why.

This is exactly what I am doing so I can run matlab among other things with
correct path set where source contains a  set of .m files and launch .mex
files where Matlab can find them.
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