TubeTK/Documentation/ComputeTortuosity

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Documentation

  • Measuring the tortuosity of vessels using Distance Metric, Inflection Count Metric and Sum Of Angles Metric methods.

Right now, only the distance metric method is implemented.

Parameters

  1. input data : .tre files = files containing the successive 3D positions of the centerline of the tubes (example : tubeTK/Data/Branch-truth.tre)
  2. mask : image specifying the ROI. Pixel intensity is 0 outside the ROI and ≠0 inside the ROI (example : tubeTK/Data/Branch.n010.mha)
  3. Methods
    1. Distance Metric (flag = d, default = true)
    2. Inflection Count Metric (flag = i, default = false)
    3. Sum Of Angles Metric (flag = s, default = false)

Tests

Screenshot-9.png