TubeTK/Documentation/ComputeTortuosity: Difference between revisions

From KitwarePublic
Jump to navigationJump to search
Line 4: Line 4:
*For more informations about the methods, please visit [http://www.kitware.com/publications/item/view/1123 Measuring Tortuosity of the Intracerebral Vasculature from MRA Images] (Informations about the methods used to measure the tortuosity of the blood vessels are on pages 4-5)
*For more informations about the methods, please visit [http://www.kitware.com/publications/item/view/1123 Measuring Tortuosity of the Intracerebral Vasculature from MRA Images] (Informations about the methods used to measure the tortuosity of the blood vessels are on pages 4-5)


== Use cases ==
== Parameters ==
# input data : .tre files = files containing the successive 3D positions of the centerline of the tubes (example : tubeTK/Data/Branch-truth.tre)
# mask : image specifying the ROI. Pixel intensity is 0 outside the ROI and ≠0 inside the ROI (example : tubeTK/Data/Branch.n010.mha)
# Methods
## Distance Metric (flag = d)
##


/home/romain/Projects/TubeTK/tubetk/Applications/CLI/ComputeTortuosity/Testing/tre_files/Sick_A_c_upsamp--new.tre /home/romain/Projects/TubeTK/tubetk/Applications/CLI/ComputeTortuosity/Testing/masks/Branch.n010.mha


== Tests ==
== Tests ==

Revision as of 20:18, 8 November 2010

Documentation

  • Measuring the tortuosity of vessels using Distance Metric, Inflection Count Metric and Sum Of Angles Metric methods.

Right now, only the distance metric method is implemented.

Parameters

  1. input data : .tre files = files containing the successive 3D positions of the centerline of the tubes (example : tubeTK/Data/Branch-truth.tre)
  2. mask : image specifying the ROI. Pixel intensity is 0 outside the ROI and ≠0 inside the ROI (example : tubeTK/Data/Branch.n010.mha)
  3. Methods
    1. Distance Metric (flag = d)

/home/romain/Projects/TubeTK/tubetk/Applications/CLI/ComputeTortuosity/Testing/tre_files/Sick_A_c_upsamp--new.tre /home/romain/Projects/TubeTK/tubetk/Applications/CLI/ComputeTortuosity/Testing/masks/Branch.n010.mha

Tests