ITK/Tcons/Agendas/2010 12 21: Difference between revisions

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[[ITK_Release_4/Data_Collection|Data Collection]]
[[ITK_Release_4/Data_Collection|Data Collection]]

Use case with Cone Beam CT datasets uploaded to [ MIDAS]. Downloading through web interface is at the item level, for larger data sets (collections/communities) kitware is developing a desktop application.

== Migration Guide Process ==
== Migration Guide Process ==

Revision as of 14:56, 21 December 2010

How to Join the Tcon

Number to Call

  • 1-800-728-9607 (in the US) or
  • +1 9139049873 (international)
  • access code 6815251


Project Management

February Meeting in Boston

  • Set for February 2-3, 2011 in Boston at Harvard Medical School.

Please register for the meeting ASAP. Here is the link for the registration:

Changing Tcon Day/Time

We ran a survey:

Wednesday at 10am EST seems to be the time that matches all the people who responded the survey.

Technical Topics


Lingering Failing Tests ( Feet + Heat )

  • DICOM Tests tkGDCMSeriesStreamReadImageWrite3 and tkGDCMSeriesStreamReadImageWrite4
    • Malaterre/Roden status update
    • Able to reproduce the problem?
    • resolution?
  • KWStyle failing
    • FFT related failure Completed
    • Add KWStyle tests to CDash@Home
  • JPEG2000 on BigEndian
    • Kitware/Harvard/Malaterre status update
    • Anticipated resolution? Completed
  • VXL vcl-test_atomic_count
    • Kitware status update? Completed

New Year's Resolutions

  • Bring Valgrind errors to Zero.
    • Almost 1/2 of the defective tests are meta related - 15 out of 31 failing tests
  1. itkMetaArrowConverterTest
  2. itkGE4
  3. itkSiemans
  4. itkGE4
  5. itkGEAdw
  6. itkGE5
  7. itkReadWriteSpatialObjectTest1
  8. testMetaLine
  9. itkImageFileReaderDimensionsTest_MHD
  10. itkMetaImageStreamingWriterIOTest
  11. itkImageFileWriterPastingTest1
  12. itkReadWriteImageWithDictionaryTest1
  13. itkMetaImageIOMetaDataTest
  14. itkMetaImageStreamingWriterIOTest2
  15. itkMetaImageIOTest

One patch for metaObject in Gerrit




  • Date: January 7th

Major topics to be completed

ITKv4 A05

  • Date: January 28th ( hard deadline before Winter Design Meeting )

Major topics to be completed

  • GPU Draft Implementation
  • SimpleITK Draft Implementation


Redmine demo

Gerrit Reviews

Doxygen Nightly

ITK Data

We had a tcon on December 16th.

Summary here:

Data Collection

Use case with Cone Beam CT datasets uploaded to MIDAS. Downloading through web interface is at the item level, for larger data sets (collections/communities) kitware is developing a desktop application.

Migration Guide Process

Simple ITK

  • Code generations
    • Using Lua and JSON
  • Interfacing to
    • ImageJ / Fiji
    • CellProfiler



Dan and Mathieu to report

Image Registration Revision

  • Start sending patches to Gerrit
    • New CompositeTransform class is underway
    • New DeformationFieldTransform class is underway
    • Transform IO will be adjusted accordingly

Level Set

Time Stamp Proposal


  • Had a Tcon about modularization on Dec 3 [1].

The initial partition seems to be good to start with.

  • Brad King worked on cmake packaging prototypes
  • Xiaoxiao Liu (Kitware) is working on scripts to migrate monolithic ITK to modular ITK

TIFF Update

  • Brad King addressed the int issues
  • Currently at
 git fetch git:// +libtiff4beta6:libtiff4beta6

Sequestered Reference Applications

We have already made significant changes, and they are not being recorded yet. It is time to setup these reference applications.


  • V3D Plugins
  • Slicer
  • VV
  • Insight Applications now submitting
    • Broken: need to use it as an example for the Migration Guide.

Development Versions following ITKv4


  • IGSTK, after SPIE'11 (IGSTK5.0)
  • Insight Applications (ITKApps from v3.20)
  • ITK tests from v3.20


ITK Readers for Microscopy formats

  • There's a need for readers in the microscopy community in order to be able to use ITK
    • Zeiss (LSM and ZVI)
    • Leica (LIF)
    • Olympus (OIB)
    • Nikon ()
  • BioFormats has readers and example files for these. It is Java with C++ bindings for ITK, BUT it's GPL.