Difference between revisions of "ITK/Tcons/Agendas/2010 12 21"

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* Date: January 7th
* Date: January 7th


====Major topics to be completed====
====Major topics to be merged ====
* Fixing Windows 64bits problem with "long"...
* Fixing Windows 64bits problem with "long"...
** Patch submitted to Gerrit: http://review.source.kitware.com/#change,578
** Patch submitted to Gerrit: http://review.source.kitware.com/#change,578
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[[ITK_Release_4/Data_Collection|Data Collection]]
[[ITK_Release_4/Data_Collection|Data Collection]]


=== Use Cases ===


==== Cone Beam CT ====
* Use case with Cone Beam CT datasets uploaded to [http://midas.kitware.com/ MIDAS].
* Downloading through web interface is at the item level, for larger data sets (collections/communities) kitware is developing a desktop application.
==== BrainWeb ====
Gerrit patch intended to facilitate the use of BrainWeb datasets:
  http://review.source.kitware.com/#change,605


== Migration Guide Process ==
== Migration Guide Process ==

Latest revision as of 15:54, 21 December 2010

How to Join the Tcon

Number to Call

  • 1-800-728-9607 (in the US) or
  • +1 9139049873 (international)
  • access code 6815251

Webex

Project Management

February Meeting in Boston

  • Set for February 2-3, 2011 in Boston at Harvard Medical School.

Please register for the meeting ASAP. Here is the link for the registration:

Changing Tcon Day/Time

We ran a survey:

Wednesday at 10am EST seems to be the time that matches all the people who responded the survey.

Technical Topics

Dashboard

Lingering Failing Tests ( Feet + Heat )

  • DICOM Tests tkGDCMSeriesStreamReadImageWrite3 and tkGDCMSeriesStreamReadImageWrite4
    • Malaterre/Roden status update
    • Able to reproduce the problem?
    • resolution?
  • KWStyle failing
    • FFT related failure Completed
    • Add KWStyle tests to CDash@Home
  • JPEG2000 on BigEndian
    • Kitware/Harvard/Malaterre status update
    • Anticipated resolution? Completed
  • VXL vcl-test_atomic_count
    • Kitware status update? Completed

New Year's Resolutions

  • Bring Valgrind errors to Zero.
    • Almost 1/2 of the defective tests are meta related - 15 out of 31 failing tests
  1. itkMetaArrowConverterTest http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001634
  2. itkGE4 http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001633
  3. itkSiemans http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001632
  4. itkGE4 http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001633
  5. itkGEAdw http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001631
  6. itkGE5 http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001630
  7. itkReadWriteSpatialObjectTest1 http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001629
  8. testMetaLine http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001627
  9. itkImageFileReaderDimensionsTest_MHD http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001625
  10. itkMetaImageStreamingWriterIOTest http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001624
  11. itkImageFileWriterPastingTest1 http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001620
  12. itkReadWriteImageWithDictionaryTest1 http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001619
  13. itkMetaImageIOMetaDataTest http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001618
  14. itkMetaImageStreamingWriterIOTest2 http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001617
  15. itkMetaImageIOTest http://www.cdash.org/CDash/viewDynamicAnalysisFile.php?id=1001616

One patch for metaObject in Gerrit

Schedule

ITKv4-A03

ITKv4-A04

  • Date: January 7th

Major topics to be merged

ITKv4 A05

  • Date: January 28th ( hard deadline before Winter Design Meeting )

Major topics to be completed

  • GPU Draft Implementation
  • SimpleITK Draft Implementation

Outreach

Redmine demo

Gerrit Reviews

Doxygen Nightly

ITK Data

We had a tcon on December 16th.

Summary here:

Data Collection

Use Cases

Cone Beam CT

  • Use case with Cone Beam CT datasets uploaded to MIDAS.
  • Downloading through web interface is at the item level, for larger data sets (collections/communities) kitware is developing a desktop application.

BrainWeb

Gerrit patch intended to facilitate the use of BrainWeb datasets:

 http://review.source.kitware.com/#change,605

Migration Guide Process

Simple ITK

  • Code generations
    • Using Lua and JSON
  • Interfacing to
    • ImageJ / Fiji
    • CellProfiler

GPU

DICOM

Dan and Mathieu to report

Image Registration Revision

  • Start sending patches to Gerrit
    • New CompositeTransform class is underway
    • New DeformationFieldTransform class is underway
    • Transform IO will be adjusted accordingly

Level Set

Time Stamp Proposal

Modularization

  • Had a Tcon about modularization on Dec 3 [1].

The initial partition seems to be good to start with.

  • Brad King worked on cmake packaging prototypes
  • Xiaoxiao Liu (Kitware) is working on scripts to migrate monolithic ITK to modular ITK

TIFF Update

  • Brad King addressed the int issues
  • Currently at
 git fetch git://kwsource.kitwarein.com/~bradking/itk/bradkings-itk.git +libtiff4beta6:libtiff4beta6

Sequestered Reference Applications

We have already made significant changes, and they are not being recorded yet. It is time to setup these reference applications.

Ongoing

  • V3D Plugins
  • Slicer
  • VV
  • Insight Applications now submitting
    • Broken: need to use it as an example for the Migration Guide.

Development Versions following ITKv4

Pending

  • IGSTK, after SPIE'11 (IGSTK5.0)
  • Insight Applications (ITKApps from v3.20)
  • ITK tests from v3.20

Wrapping


ITK Readers for Microscopy formats

  • There's a need for readers in the microscopy community in order to be able to use ITK
    • Zeiss (LSM and ZVI)
    • Leica (LIF)
    • Olympus (OIB)
    • Nikon ()
  • BioFormats has readers and example files for these. It is Java with C++ bindings for ITK, BUT it's GPL.