https://public.kitware.com/Wiki/api.php?action=feedcontributions&user=218.186.13.250&feedformat=atomKitwarePublic - User contributions [en]2024-03-29T10:29:19ZUser contributionsMediaWiki 1.38.6https://public.kitware.com/Wiki/index.php?title=ITK/Tcons/Agendas/2010_12_14&diff=35563ITK/Tcons/Agendas/2010 12 142010-12-14T16:12:58Z<p>218.186.13.250: /* Lingering Failing Tests ( Feet + Heat ) */</p>
<hr />
<div>= How to Join the Tcon =<br />
<br />
== Number to Call ==<br />
<br />
* 1-800-728-9607 (in the US) or<br />
* +1 9139049873 (international)<br />
* access code 6815251<br />
<br />
== Webex ==<br />
<br />
* Meeting link<br />
* https://emeetings.webex.com/emeetings/j.php?ED=138191182&UID=482060457&PW=NNzJiNDk1ZGU3<br />
<br />
= Project Management =<br />
<br />
== February Meeting in Boston ==<br />
<br />
* Set for February 2-3, 2011 in Boston at Harvard Medical School.<br />
<br />
** http://www.events.harvard.edu/web/2281<br />
** http://www.itk.org/Wiki/Winter_ITKv4_2011_Meeting<br />
<br />
Please register for the meeting ASAP. Here is the link for the registration:<br />
<br />
* http://www.events.harvard.edu/30325<br />
<br />
= Technical Topics =<br />
<br />
== Dashboard ==<br />
<br />
* Dashboard Status - [http://www.cdash.org/CDash/index.php?project=Insight Today's Dashboard]<br />
<br />
=== Lingering Failing Tests ( Feet + Heat ) ===<br />
<br />
* JPEG2000 on BigEndian<br />
** Kitware/Harvard/Malaterre status update<br />
** Able to reproduce problem?<br />
** Anticipated resolution?<br />
<br />
* DICOM Tests tkGDCMSeriesStreamReadImageWrite3 and tkGDCMSeriesStreamReadImageWrite4<br />
** Malaterre/Roden status update<br />
** Able to reproduce the problem?<br />
** resolution?<br />
<br />
* VXL vcl-test_atomic_count<br />
** Kitware status update?<br />
<br />
* KWStyle failing<br />
** FFT related failure<br />
<br />
== ITKv4-A04 ==<br />
<br />
* Fixing Windows 64bits problem with "long"...<br />
<br />
== Outreach ==<br />
<br />
* MICCAI 2011 Call for Workshops and Tutorials<br />
** [[ITK_Release_4/Outreach/Conferences/MICCAI 2011|Suggested Tutorials for MICCAI 2011]]<br />
* Note that we already have an accepted tutorial for CVPR 2011 on the use of ITK+OpenCV<br />
<br />
== Redmine demo ==<br />
<br />
* Project management software<br />
* [http://ec2-184-72-196-165.compute-1.amazonaws.com:8080/redmine/ SimpleITK Redmine] instance on EC2<br />
<br />
== Gerrit Reviews ==<br />
<br />
* http://review.source.kitware.com/#q,status:open,n,z<br />
<br />
== Doxygen Nightly ==<br />
<br />
** http://www.itk.org/Wiki/ITK_Documentation<br />
<br />
== ITK Data==<br />
<br />
Three levels of data :<br />
#Testing - a select set of data sets that are used for regression testing - exists in MIDAS.<br />
#Examples - datasets that are part of the itk examples - exists but didn't see on MIDAS<br />
#Development - a large collection of various image data sets and segmentations used by the ITK developers and the community to tune algorithm parameters and select optimal combinations of components in pipelines.<br />
<br />
A data set will include:<br />
#image(s)<br />
#additional data file(s) - optional<br />
#segmentation(s) - optional<br />
#detailed description of the data<br />
<br />
===Questions===<br />
#Should this be hosted via MIDAS? NCI has a large, open, repository of various images (DICOM) with a very nice front end [https://imaging.nci.nih.gov/ncia/login.jsf], perhaps possible to leverage this?<br />
#Will kitware be willing to host such a large repository (I suspect this will be many Terabytes of data)?<br />
#What should we use as the file format for image(s), segmentation(s)? [smallest possible set of file formats that support the desired functionality].<br />
<br />
<br />
== Migration Guide Process ==<br />
<br />
* [[ITK_Release_4/Users Migration Guide|Users Migration Guide]] (Gabe Hart)<br />
** [[ITK_Release_4/What Developers Must Do To Contribute to the Users Migration Guide|What Developers Must Do To Contribute to the Users Migration Guide]]<br />
** [[ITK_Release_4/MigrationGuideDeveloperTutorial|Developer Tutorial]]<br />
* Example XML<br />
** http://review.source.kitware.com/#patch,sidebyside,224,2,Migration/DecoupleNumericTraitsFromContainers.xml<br />
<br />
== Simple ITK ==<br />
<br />
* Code generations<br />
** Using Lua and JSON<br />
<br />
* Interfacing to<br />
** ImageJ / Fiji<br />
** CellProfiler<br />
<br />
== GPU ==<br />
<br />
* Summary of tcon with NVIDIA from Monday Nov 22 at 1pm EST (Won Ki)<br />
* [[ITK_Release_4/GPU Acceleration|GPU Acceleration - V4]]<br />
** [[ITK_Release_4/GPU Acceleration/Tcon-2010-11-22|Tcon 2010-11-22]]<br />
<br />
== DICOM ==<br />
<br />
Dan and Mathieu to report<br />
* [[ITKv4_DICOM_Communications_Discussion | Beginnings of a requirements document]]. Comments welcome.<br />
* Proposed [[ITK_Release_4/DICOM/Tcon_Proposal | TConf]]<br />
<br />
== Image Registration Revision ==<br />
<br />
* Start sending patches to Gerrit<br />
** New CompositeTransform class is underway<br />
** New DeformationFieldTransform class is underway<br />
** Transform IO will be adjusted accordingly<br />
<br />
== Level Set ==<br />
<br />
* Refactoring page<br />
** [[Refactoring Level-Set framework - V4]]<br />
<br />
== Time Stamp Proposal==<br />
<br />
* [[ITK_Release_4/Video/Time Stamp|Time Stamp]]<br />
<br />
== Modularization ==<br />
<br />
* Had a Tcon about modularization on Dec 3 [http://www.itk.org/Wiki/ITK_Release_4/Modularization/Tcon-2010-12-03].<br />
The initial partition seems to be good to start with.<br />
* Brad King worked on cmake packaging prototypes<br />
* Xiaoxiao Liu (Kitware) is working on scripts to migrate monolithic ITK to modular ITK<br />
<br />
== TIFF Update ==<br />
<br />
* Brad King addressed the int issues<br />
* Currently at<br />
<br />
git fetch git://kwsource.kitwarein.com/~bradking/itk/bradkings-itk.git +libtiff4beta6:libtiff4beta6<br />
<br />
== Sequestered Reference Applications ==<br />
<br />
We have already made significant changes, and they are not being recorded yet. It is time to setup these reference applications.<br />
<br />
=== Ongoing ===<br />
<br />
* V3D Plugins<br />
* Slicer<br />
* VV<br />
* Insight Applications now submitting<br />
** Broken: need to use it as an example for the Migration Guide.<br />
<br />
== Development Versions following ITKv4 == <br />
<br />
* OTB<br />
** http://dash.orfeo-toolbox.org/buildSummary.php?buildid=29602<br />
* GoFigure2<br />
** Nightly build use the current ITKv4. <br />
** http://my.cdash.org/index.php?project=GoFigure2<br />
<br />
=== Pending ===<br />
<br />
* IGSTK, after SPIE'11 ([http://public.kitware.com/IGSTKWIKI/index.php/IGSTK5.0 IGSTK5.0])<br />
* Insight Applications (ITKApps from v3.20)<br />
*ITK tests from v3.20<br />
<br />
== Wrapping ==<br />
<br />
* Status (Alex)<br />
* [[ITK_Release_4/Wrapping|Wrapping]]<br />
<br />
<br />
== ITK Readers for Microscopy formats ==<br />
<br />
* There's a need for readers in the microscopy community in order to be able to use ITK<br />
** Zeiss (LSM and ZVI)<br />
** Leica (LIF)<br />
** Olympus (OIB)<br />
** Nikon ()<br />
* [http://www.loci.wisc.edu/software/bio-formats BioFormats] has readers and example files for these. It is Java with C++ bindings for ITK, BUT it's GPL.</div>218.186.13.250https://public.kitware.com/Wiki/index.php?title=ITK/Tcons/Minutes/2010_12_14&diff=35558ITK/Tcons/Minutes/2010 12 142010-12-14T16:04:11Z<p>218.186.13.250: /* Attendees */</p>
<hr />
<div>= Attendees =<br />
<br />
* Jim Miller<br />
* Mark Roden<br />
* John Galeotti<br />
* Wes Turner<br />
* Xiaoxiao Liu<br />
* Luis Ibanez<br />
* Alex Gouaillard<br />
<br />
= Project Topics =<br />
<br />
<br />
= Technical Topics =<br />
<br />
<br />
= Action Items =</div>218.186.13.250https://public.kitware.com/Wiki/index.php?title=ITK/Tcons/Agendas/2010_12_14&diff=35556ITK/Tcons/Agendas/2010 12 142010-12-14T16:00:46Z<p>218.186.13.250: /* Lingering Failing Tests ( Feet + Heat ) */</p>
<hr />
<div>= How to Join the Tcon =<br />
<br />
== Number to Call ==<br />
<br />
* 1-800-728-9607 (in the US) or<br />
* +1 9139049873 (international)<br />
* access code 6815251<br />
<br />
== Webex ==<br />
<br />
* Meeting link<br />
* https://emeetings.webex.com/emeetings/j.php?ED=138191182&UID=482060457&PW=NNzJiNDk1ZGU3<br />
<br />
= Project Management =<br />
<br />
== February Meeting in Boston ==<br />
<br />
* Set for February 2-3, 2011 in Boston at Harvard Medical School.<br />
<br />
** http://www.events.harvard.edu/web/2281<br />
** http://www.itk.org/Wiki/Winter_ITKv4_2011_Meeting<br />
<br />
Please register for the meeting ASAP. Here is the link for the registration:<br />
<br />
* http://www.events.harvard.edu/30325<br />
<br />
= Technical Topics =<br />
<br />
== Dashboard ==<br />
<br />
* Dashboard Status - [http://www.cdash.org/CDash/index.php?project=Insight Today's Dashboard]<br />
<br />
=== Lingering Failing Tests ( Feet + Heat ) ===<br />
<br />
* JPEG2000 on BigEndian<br />
** Kitware/Harvard/Cosmo status update<br />
** Able to reproduce problem?<br />
** Anticipated resolution?<br />
<br />
* DICOM Tests tkGDCMSeriesStreamReadImageWrite3 and tkGDCMSeriesStreamReadImageWrite4<br />
** Cosmo status update<br />
** Able to reproduce the problem?<br />
** resolution?<br />
<br />
* VXL vcl-test_atomic_count<br />
** Kitware status update?<br />
<br />
* KWStyle failing<br />
** FFT related failure<br />
<br />
== ITKv4-A04 ==<br />
<br />
* Fixing Windows 64bits problem with "long"...<br />
<br />
== Outreach ==<br />
<br />
* MICCAI 2011 Call for Workshops and Tutorials<br />
** [[ITK_Release_4/Outreach/Conferences/MICCAI 2011|Suggested Tutorials for MICCAI 2011]]<br />
* Note that we already have an accepted tutorial for CVPR 2011 on the use of ITK+OpenCV<br />
<br />
== Redmine demo ==<br />
<br />
* Project management software<br />
* [http://ec2-184-72-196-165.compute-1.amazonaws.com:8080/redmine/ SimpleITK Redmine] instance on EC2<br />
<br />
== Gerrit Reviews ==<br />
<br />
* http://review.source.kitware.com/#q,status:open,n,z<br />
<br />
== Doxygen Nightly ==<br />
<br />
** http://www.itk.org/Wiki/ITK_Documentation<br />
<br />
== ITK Data==<br />
<br />
Three levels of data :<br />
#Testing - a select set of data sets that are used for regression testing - exists in MIDAS.<br />
#Examples - datasets that are part of the itk examples - exists but didn't see on MIDAS<br />
#Development - a large collection of various image data sets and segmentations used by the ITK developers and the community to tune algorithm parameters and select optimal combinations of components in pipelines.<br />
<br />
A data set will include:<br />
#image(s)<br />
#additional data file(s) - optional<br />
#segmentation(s) - optional<br />
#detailed description of the data<br />
<br />
===Questions===<br />
#Should this be hosted via MIDAS? NCI has a large, open, repository of various images (DICOM) with a very nice front end [https://imaging.nci.nih.gov/ncia/login.jsf], perhaps possible to leverage this?<br />
#Will kitware be willing to host such a large repository (I suspect this will be many Terabytes of data)?<br />
#What should we use as the file format for image(s), segmentation(s)? [smallest possible set of file formats that support the desired functionality].<br />
<br />
<br />
== Migration Guide Process ==<br />
<br />
* [[ITK_Release_4/Users Migration Guide|Users Migration Guide]] (Gabe Hart)<br />
** [[ITK_Release_4/What Developers Must Do To Contribute to the Users Migration Guide|What Developers Must Do To Contribute to the Users Migration Guide]]<br />
** [[ITK_Release_4/MigrationGuideDeveloperTutorial|Developer Tutorial]]<br />
* Example XML<br />
** http://review.source.kitware.com/#patch,sidebyside,224,2,Migration/DecoupleNumericTraitsFromContainers.xml<br />
<br />
== Simple ITK ==<br />
<br />
* Code generations<br />
** Using Lua and JSON<br />
<br />
* Interfacing to<br />
** ImageJ / Fiji<br />
** CellProfiler<br />
<br />
== GPU ==<br />
<br />
* Summary of tcon with NVIDIA from Monday Nov 22 at 1pm EST (Won Ki)<br />
* [[ITK_Release_4/GPU Acceleration|GPU Acceleration - V4]]<br />
** [[ITK_Release_4/GPU Acceleration/Tcon-2010-11-22|Tcon 2010-11-22]]<br />
<br />
== DICOM ==<br />
<br />
Dan and Mathieu to report<br />
* [[ITKv4_DICOM_Communications_Discussion | Beginnings of a requirements document]]. Comments welcome.<br />
* Proposed [[ITK_Release_4/DICOM/Tcon_Proposal | TConf]]<br />
<br />
== Image Registration Revision ==<br />
<br />
* Start sending patches to Gerrit<br />
** New CompositeTransform class is underway<br />
** New DeformationFieldTransform class is underway<br />
** Transform IO will be adjusted accordingly<br />
<br />
== Level Set ==<br />
<br />
* Refactoring page<br />
** [[Refactoring Level-Set framework - V4]]<br />
<br />
== Time Stamp Proposal==<br />
<br />
* [[ITK_Release_4/Video/Time Stamp|Time Stamp]]<br />
<br />
== Modularization ==<br />
<br />
* Had a Tcon about modularization on Dec 3 [http://www.itk.org/Wiki/ITK_Release_4/Modularization/Tcon-2010-12-03].<br />
The initial partition seems to be good to start with.<br />
* Brad King worked on cmake packaging prototypes<br />
* Xiaoxiao Liu (Kitware) is working on scripts to migrate monolithic ITK to modular ITK<br />
<br />
== TIFF Update ==<br />
<br />
* Brad King addressed the int issues<br />
* Currently at<br />
<br />
git fetch git://kwsource.kitwarein.com/~bradking/itk/bradkings-itk.git +libtiff4beta6:libtiff4beta6<br />
<br />
== Sequestered Reference Applications ==<br />
<br />
We have already made significant changes, and they are not being recorded yet. It is time to setup these reference applications.<br />
<br />
=== Ongoing ===<br />
<br />
* V3D Plugins<br />
* Slicer<br />
* VV<br />
* Insight Applications now submitting<br />
** Broken: need to use it as an example for the Migration Guide.<br />
<br />
== Development Versions following ITKv4 == <br />
<br />
* OTB<br />
** http://dash.orfeo-toolbox.org/buildSummary.php?buildid=29602<br />
* GoFigure2<br />
** Nightly build use the current ITKv4. <br />
** http://my.cdash.org/index.php?project=GoFigure2<br />
<br />
=== Pending ===<br />
<br />
* IGSTK, after SPIE'11 ([http://public.kitware.com/IGSTKWIKI/index.php/IGSTK5.0 IGSTK5.0])<br />
* Insight Applications (ITKApps from v3.20)<br />
*ITK tests from v3.20<br />
<br />
== Wrapping ==<br />
<br />
* Status (Alex)<br />
* [[ITK_Release_4/Wrapping|Wrapping]]<br />
<br />
<br />
== ITK Readers for Microscopy formats ==<br />
<br />
* There's a need for readers in the microscopy community in order to be able to use ITK<br />
** Zeiss (LSM and ZVI)<br />
** Leica (LIF)<br />
** Olympus (OIB)<br />
** Nikon ()<br />
* [http://www.loci.wisc.edu/software/bio-formats BioFormats] has readers and example files for these. It is Java with C++ bindings for ITK, BUT it's GPL.</div>218.186.13.250https://public.kitware.com/Wiki/index.php?title=ITK/Tcons/Minutes/2010_11_30&diff=34951ITK/Tcons/Minutes/2010 11 302010-11-30T16:09:24Z<p>218.186.13.250: /* Attendees */</p>
<hr />
<div>= Attendees =<br />
<br />
* Jim Miller<br />
* Bill Lorensen<br />
* Kent Williams<br />
* Mark Roden<br />
* Hans Johnson<br />
* Luis Ibanez<br />
* Alex Gouaillard<br />
<br />
= Project Topics =<br />
<br />
<br />
= Technical Topics =<br />
<br />
* Alpha release (maybe Friday...)<br />
* Updating VXL in ITK ?<br />
<br />
= Action Items =</div>218.186.13.250