Directory Libs/FreeSurfer/

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jcfr 2009-12-08 18:34 Rev.: 11226

ENH: In CMakeLists.txt, change deprecated SUBDIRS command into ADD_SUBDIRECTORY

See http://cmake.org/cmake/help/cmake-2-8-docs.html#command:subdirs

when subdirs command was taking a list of directory, change it
using the following pattern:

Before:
subdirs(sagarmatha kumbhu eiger)

After:
SET(dirs
sagarmatha
kumbhu
eiger
)
FOREACH(dir ${dirs})
ADD_SUBDIRECTORY(${dir})
ENDFOREACH(dir)

0 lines of code changed in 1 file:

• Libs/FreeSurfer: CMakeLists.txt (changed)

jcfr 2009-12-07 23:15 Rev.: 11209

ENH: Update CMakeLists.txt - CMake 2.6 is now required

The following line have been added:

CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
IF(COMMAND CMAKE_POLICY)
CMAKE_POLICY(SET CMP0003 NEW)
ENDIF(COMMAND CMAKE_POLICY)
MARK_AS_ADVANCED(CMAKE_BACKWARDS_COMPATIBILITY)

0 lines of code changed in 1 file:

• Libs/FreeSurfer: CMakeLists.txt (changed)

naucoin 2009-10-26 17:07 Rev.: 10754

COMP: look at return values from string and file calls

93 lines of code changed in 4 files:

• Libs/FreeSurfer: vtkFSSurfaceAnnotationReader.cxx (+9 -2), vtkFSSurfaceLabelReader.cxx (+7 -4), vtkFSSurfaceReader.cxx (+38 -10), vtkFSSurfaceScalarReader.cxx (+39 -9)

pieper 2009-10-19 11:08 Rev.: 10687

ENH: handle more datatypes in lookup table

76 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSLookupTable.cxx (+76 -4)

naucoin 2009-08-21 17:53 Rev.: 10331

BUG: set reasonable table ranges, used to display scalar bar widget

0 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSLookupTable.cxx (changed)

naucoin 2009-08-19 12:49 Rev.: 10309

BUG: return the table range, set the Heat high threshold

0 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSLookupTable.cxx (changed)

naucoin 2009-08-18 17:40 Rev.: 10302

BUG: return the range, todo: figure out why this doesn't display properly in vtkScalarBarActor

0 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSLookupTable.cxx (changed)

domibel 2009-08-16 11:14 Rev.: 10267

ENH: Version numbering for shared libraries

0 lines of code changed in 1 file:

• Libs/FreeSurfer: CMakeLists.txt (changed)

naucoin 2009-08-12 18:07 Rev.: 10234

BUG: was missing check for 0 vertices, which can happen if the file is empty

0 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSSurfaceScalarReader.cxx (changed)

lorensen 2008-11-21 12:20 Rev.: 7944

COMP: various warnings.

0 lines of code changed in 2 files:

• Libs/FreeSurfer: vtkFSSurfaceScalarReader.cxx (changed), vtkFSSurfaceWFileReader.cxx (changed)

naucoin 2008-09-05 13:38 Rev.: 7535

BUG: return 1 if succeed on read, 0 if fail

0 lines of code changed in 2 files:

• Libs/FreeSurfer: vtkFSSurfaceScalarReader.cxx (changed), vtkFSSurfaceScalarReader.h (changed)

naucoin 2008-08-28 10:46 Rev.: 7507

COMP: reducing compiler warnings

0 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSSurfaceReader.cxx (changed)

aylward 2008-07-08 09:41 Rev.: 7267

BUG: no default value - due to poor switch/case construction

0 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSSurfaceReader.cxx (changed)

barre 2008-05-21 18:25 Rev.: 6803

ENH: make sure all sub-project in Libs/ can be built in a standalone fashion (remove 99% of the refs to Slicer3, macros, etc). Make sure all external toolkits are properly included, and fix some issues in MRML with respect to TEEM/vtkTeem.

8 lines of code changed in 2 files:

• Libs/FreeSurfer: CMakeLists.txt (+8 -7), FreeSurferConfigure.h.in (-7)

naucoin 2008-05-20 16:15 Rev.: 6787

COMP: removed unused variable

0 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSSurfaceLabelReader.cxx (-1)

barre 2008-05-20 02:29 Rev.: 6773

ENH: Slicer3 Spring Installation Clean Up

84 lines of code changed in 1 file:

• Libs/FreeSurfer: CMakeLists.txt (+84 -48)

naucoin 2008-05-14 13:14 Rev.: 6715

ENH: experimental script to read FreeSurfer .label file and display as a contour widget. Only works with VTK 5.2 and up.

116 lines of code changed in 1 file:

• Libs/FreeSurfer: FSLabelReaderContour.tcl (new 116)

naucoin 2008-05-14 12:47 Rev.: 6713

ENH: add support for FreeSurfer .label files

332 lines of code changed in 3 files:

• Libs/FreeSurfer: CMakeLists.txt (+1), vtkFSSurfaceLabelReader.cxx (new 216), vtkFSSurfaceLabelReader.h (new 115)

barre 2008-04-25 17:27 Rev.: 6552

ENH: allow a module (Modules/GradientAnisotropicDiffusionFilter for now) to be built in a standalone fashion against eithera Slicer3 build or Slicer3 installed. Update the config files accordingly, add missing installation rules, etc. Also unscreamify and indent many CMakeLists.txt in the process.

0 lines of code changed in 1 file:

• Libs/FreeSurfer: CMakeLists.txt (changed)

millerjv 2008-01-31 12:24 Rev.: 5665

ENH: Changes in the Slicer3 installation layout to simplify navigation. Most things will now try install themselves under <Installation Directory>/lib/<Package> or <Installation Directory>/include/<Package>. For example, <Installation Directory>/lib/Slicer3, <Installation Directory>/lib/MRML, <Installation Directory>/lib/ModuleDescriptionParser. This allows setting include and library paths consistently using ../<SomeOtherPackage> or ../../include/<SomeOtherPackage>, etc.

2 lines of code changed in 1 file:

• Libs/FreeSurfer: CMakeLists.txt (+2 -2)

naucoin 2008-01-23 13:36 Rev.: 5578

BUG: check that the vertex index is in range

8 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSSurfaceAnnotationReader.cxx (+8 -1)

naucoin 2007-12-11 17:01 Rev.: 5163

BUG: move freesurfer colour files to a more logical place in the binary and install versions

0 lines of code changed in 1 file:

• Libs/FreeSurfer: CMakeLists.txt (changed)

millerjv 2007-10-09 11:02 Rev.: 4569

ENH: Update INSTALL_* commands to INSTALL() commands.

4 lines of code changed in 1 file:

• Libs/FreeSurfer: CMakeLists.txt (+4 -1)

naucoin 2007-10-05 09:57 Rev.: 4536

STYLE: fixed tabs in ReadEmbeddedColorTable

227 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSSurfaceAnnotationReader.cxx (+227 -227)

naucoin 2007-10-05 09:53 Rev.: 4535

ENH: read in new style colour tables as well

156 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSSurfaceAnnotationReader.cxx (+156 -12)

naucoin 2007-09-24 11:27 Rev.: 4417

BUG: Need opacity to be one for all colours but black

771 lines of code changed in 2 files:

• Libs/FreeSurfer: FreeSurferColorLUT.txt (+686 -686), Simple_surface_labels2002.txt (+85 -85)

pieper 2007-03-27 11:32 Rev.: 3042

ENH: fixes for the cpacked output directory structure

0 lines of code changed in 1 file:

• Libs/FreeSurfer: CMakeLists.txt (changed)

naucoin 2007-03-06 18:26 Rev.: 2834

ENH: added the colour files as first class citizens, copy them to build dir, use them and the new methods in the query atlas

818 lines of code changed in 3 files:

• Libs/FreeSurfer: CMakeLists.txt (+11), FreeSurferColorLUT.txt (new 722), Simple_surface_labels2002.txt (new 85)

pieper 2007-03-05 13:51 Rev.: 2739

ENH: removed direct access to cerr from many classes -- please use vtkErrorMacro or vtkDebugMacro for this purpose. The new launcher requires text feedback to go to cout so that all messages are printed to the user in the correct order

5 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSSurfaceAnnotationReader.cxx (+5 -71)

naucoin 2007-03-01 14:19 Rev.: 2716

STYLE: fixed indentation

25 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSSurfaceAnnotationReader.h (+25 -24)

naucoin 2007-02-28 17:15 Rev.: 2705

BUG: fixed some problems with unsigned char reading. STYLE: fixed indentation and doc

68 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSLookupTable.cxx (+68 -78)

naucoin 2007-02-28 17:14 Rev.: 2704

STYLE: updated documentation

54 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSLookupTable.h (+54 -27)

naucoin 2007-02-27 17:51 Rev.: 2697

ENH: Added Labels type, still debugging it. Work around for RedBlue and BlueRed. Support unsigned char input volumes when mapping through the table

67 lines of code changed in 2 files:

• Libs/FreeSurfer: vtkFSLookupTable.cxx (+65 -12), vtkFSLookupTable.h (+2)

naucoin 2007-02-27 13:24 Rev.: 2689

BUG: make it a subclass of a look up table, so that can cast it in the MRML nodes properly, take out number of colours as it's defined in the superclass

3 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSLookupTable.h (+3 -19)

naucoin 2007-02-27 13:22 Rev.: 2688

ENH: call the superclass print, fixed typo in error macro

2 lines of code changed in 1 file:

• Libs/FreeSurfer: vtkFSLookupTable.cxx (+2 -2)

naucoin 2006-12-29 19:37 Rev.: 1952

ENH: make the old constants an enum

0 lines of code changed in 2 files:

• Libs/FreeSurfer: vtkFSLookupTable.cxx (changed), vtkFSLookupTable.h (changed)

naucoin 2006-12-19 17:57 Rev.: 1886

BUG: moved const ints into enum

23 lines of code changed in 2 files:

• Libs/FreeSurfer: vtkFSSurfaceWFileReader.cxx (+7 -7), vtkFSSurfaceWFileReader.h (+16 -12)

naucoin 2006-12-18 18:19 Rev.: 1865

BUG: make the magic numbers an enum, was getting a clash between header files

11 lines of code changed in 2 files:

• Libs/FreeSurfer: vtkFSSurfaceScalarReader.cxx (+3 -2), vtkFSSurfaceScalarReader.h (+8 -3)

naucoin 2006-12-15 18:04 Rev.: 1853

ENH: Added the FreeSurfer W surface file reader

269 lines of code changed in 3 files:

• Libs/FreeSurfer: CMakeLists.txt (+1), vtkFSSurfaceWFileReader.cxx (new 183), vtkFSSurfaceWFileReader.h (new 85)

naucoin 2006-09-08 11:08 Rev.: 1215

ENH: added the freesurfer look up table, and a script to show thickness on lh.pial, renamed testAnnot.tcl to showAnnotation.tcl, as it's not a true test

581 lines of code changed in 4 files:

• Libs/FreeSurfer: CMakeLists.txt (+1), vtkFSLookupTable.cxx (new 431), vtkFSLookupTable.h (new 148), vtkFSSurfaceScalarReader.h (+1 -1)

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