Insight Toolkit Developers: karthik

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karthik 2009-11-04 02:27

ENH: typedef bug in itk::Statistics::TransferFunctionBase. Pointed out by Stephan Schmitt on the Insight-users mailing list.

6 lines of code changed in:

• Code/Numerics/NeuralNetworks: itkTransferFunctionBase.h (+6 -6)

karthik 2009-10-23 03:57

ENH: Planes should be computed only if the image dimension is greater than or equal to 3

7 lines of code changed in:

• Code/SpatialObject: itkPolygonSpatialObject.txx (+7 -2)

karthik 2009-05-22 15:26

COMP: Try to resolve VS6 compiler errors such as http://www.cdash.org/CDash/viewBuildError.php?buildid=338245

7 lines of code changed in:

• Code/Review/Statistics: itkEuclideanDistanceMetric.txx (+7 -6)

karthik 2009-05-22 13:42

ENH: Fix memory leaks.

3 lines of code changed in:

• Code/Review/Statistics: itkImageClassifierFilter.txx (+3 -2)

karthik 2009-05-19 09:47

BUG: The pixel accessor functor should be used instead of the pixel accessor to add the level of indirection that makes this work with itk::VectorImage in addition to itk::Image. Thanks to report by Christopher Wyatt from Virginia Tech.

3 lines of code changed in:

• Code/Common: itkImageSliceIteratorWithIndex.h (+3 -3)

karthik 2009-05-08 10:20

ENH: Report the variable in the cache so that user code may use it.

1 lines of code changed in:

• ITKConfig.cmake.in (+1)

karthik 2009-05-06 10:37

ENH: upgrade to use the new statistics framework as well. Dimensionality of the histogram needs to be set explicitly since, its set at run time and not a compile time restriction.

5 lines of code changed in:

• Examples/Registration: ImageRegistration15.cxx (+5 -2)

karthik 2009-05-05 15:44

ENH: upgrade to use the new statistics framework as well. Dimensionality of the histogram needs to be set explicitly since, its set at run time and not a compile time restriction.

5 lines of code changed in:

• Code/Review/Statistics: itkScalarImageToHistogramGenerator.txx (+5 -3)

karthik 2009-05-05 15:27

ENH: upgrade to use the new statistics framework as well. Dimensionality of the histogram needs to be set explicitly since, its set at run time and not a compile time restriction.

16 lines of code changed in:

• Testing/Code/Algorithms: itkNormalizedMutualInformationHistogramImageToImageMetricTest.cxx (+5 -2), itkOtsuMultipleThresholdsCalculatorTest.cxx (+11 -5)

karthik 2009-05-05 15:22

ENH: upgrade to use the new statistics framework as well. Dimensionality of the histogram needs to be set explicitly since, its set at run time and not a compile time restriction.

5 lines of code changed in:

• Testing/Code/Algorithms: itkMutualInformationHistogramImageToImageMetricTest.cxx (+5 -2)

karthik 2009-05-05 14:16

ENH: upgrade to use the new statistics framework as well. Dimensionality of the histogram needs to be set explicitly since, its set at run time and not a compile time restriction.

20 lines of code changed in:

• Code/BasicFilters: itkLabelStatisticsImageFilter.h (+4 -3), itkLabelStatisticsImageFilter.txx (+11 -2)
• Testing/Code/Algorithms: itkMeanSquaresHistogramImageToImageMetricTest.cxx (+5 -2)

karthik 2009-05-05 14:03

ENH: upgrade to use the new statistics framework as well. Dimensionality of the histogram needs to be set explicitly since, its set at run time and not a compile time restriction.

5 lines of code changed in:

• Testing/Code/Algorithms: itkKullbackLeiblerCompareHistogramImageToImageMetricTest.cxx (+5 -2)

karthik 2009-05-05 14:02

ENH: Fix broken paths to the new statistics tests.

1 lines of code changed in:

• Testing/Code/Review/Statistics: CMakeLists.txt (+1 -1)

karthik 2009-05-05 13:59

ENH: upgrade to use the new statistics framework as well. Dimensionality of the histogram needs to be set explicitly since, its set at run time and not a compile time restriction.

5 lines of code changed in:

• Testing/Code/Algorithms: itkHistogramImageToImageMetricTest.cxx (+5 -2)

karthik 2009-05-05 13:57

ENH: Fix broken paths to the new statistics tests.

2 lines of code changed in:

• Testing/Code/Review/Statistics: CMakeLists.txt (+2 -4)

karthik 2009-05-05 13:47

ENH: upgrade to use the new statistics framework as well. Dimensionality of the histogram needs to be set explicitly since, its set at run time and not a compile time restriction.

49 lines of code changed in:

• Code/Algorithms: itkCompareHistogramImageToImageMetric.txx (+15 -7), itkCorrelationCoefficientHistogramImageToImageMetric.txx (+5 -2), itkHistogramImageToImageMetric.txx (+17 -2)
• Testing/Code/Algorithms: itkCompareHistogramImageToImageMetricTest.cxx (+7 -2), itkCorrelationCoefficientHistogramImageToImageMetricTest.cxx (+5 -2)

karthik 2009-05-05 13:27

ENH: upgrade to use the new statistics framework as well. Dimensionality of the histogram needs to be set explicitly since, its set at run time and not a compile time restriction.

28 lines of code changed in:

• Code/Algorithms: itkHistogramImageToImageMetric.txx (+14 -2)
• Examples/Registration: ImageRegistration14.cxx (+8 -2), ImageRegistration17.cxx (+6 -2)

karthik 2009-05-05 13:00

ENH: Fix failing test DeformableRegistration2 using the new statistics framework. Dimensionality of the histogram needs to be set explicitly since, its set at run time and not a compile time restriction.

17 lines of code changed in:

• Code/Algorithms: itkHistogramMatchingImageFilter.txx (+17 -4)

karthik 2009-05-02 10:55

ENH: Add overrides for KWStyle and revert the style to the old one.

35 lines of code changed in:

• Code/Review/Statistics: itkMeasurementVectorTraits.h (+24 -31)
• Testing/Code/Review: CMakeLists.txt (+4)
• Testing/Code/Review/Statistics: itkStatisticsTypesTest.cxx (+7 -7)

karthik 2009-05-02 01:41

ENH: Upgrade the statistics framework. Changes include 1. Making it pipeline oriented, dataobjects, process objects etc 2. consistent naming, replace calculators with filters. Details at http://www.itk.org/Wiki/Proposals:Refactoring_Statistics_Framework_2007

44595 lines of code changed in:

• CMakeLists.txt (+17), itkConfigure.h.in (+3 -2), itkIncludeDirectories.cmake (+20 -2)
• Code/Algorithms: itkBayesianClassifierInitializationImageFilter.h (+10 -1), itkBayesianClassifierInitializationImageFilter.txx (+18 -2), itkCompareHistogramImageToImageMetric.h (+9 -3), itkCorrelationCoefficientHistogramImageToImageMetric.h (+10 -3), itkHistogramImageToImageMetric.h (+5), itkHistogramImageToImageMetric.txx (+8 -3), itkHistogramMatchingImageFilter.h (+4), itkImageKmeansModelEstimator.txx (+8 -3), itkMeanSquaresHistogramImageToImageMetric.h (+6 -2), itkMutualInformationHistogramImageToImageMetric.h (+6 -2), itkNormalizedMutualInformationHistogramImageToImageMetric.h (+6 -2), itkOtsuMultipleThresholdsCalculator.h (+7 -2), itkOtsuMultipleThresholdsCalculator.txx (+6 -2), itkScalarImageKmeansImageFilter.h (+40 -4), itkScalarImageKmeansImageFilter.txx (+40 -11)
• Code/BasicFilters: itkLabelStatisticsImageFilter.h (+13 -3), itkLabelStatisticsImageFilter.txx (+11 -2), itkSpatialObjectToImageStatisticsCalculator.txx (+40 -6)
• Code/Numerics: CMakeLists.txt (+6 -1)
• Code/Numerics/NeuralNetworks: itkRBFLayer.h (+10 -2), itkRBFNetwork.h (+10 -2)
• Code/Review: CMakeLists.txt (+4)
• Code/Review/Statistics: CMakeLists.txt (new 42), itkChiSquareDistribution.cxx (new 343), itkChiSquareDistribution.h (new 210), itkCovarianceSampleFilter.h (new 120), itkCovarianceSampleFilter.txx (new 262), itkDecisionRule.cxx (new 40), itkDecisionRule.h (new 70), itkDenseFrequencyContainer2.cxx (new 92), itkDenseFrequencyContainer2.h (new 124), itkDistanceMetric.h (new 144), itkDistanceMetric.txx (new 81), itkDistanceToCentroidMembershipFunction.h (new 103), itkDistanceToCentroidMembershipFunction.txx (new 97), itkEuclideanDistanceMetric.h (new 79), itkEuclideanDistanceMetric.txx (new 81), itkEuclideanSquareDistanceMetric.h (new 72), itkEuclideanSquareDistanceMetric.txx (new 73), itkExpectationMaximizationMixtureModelEstimator.h (new 200), itkExpectationMaximizationMixtureModelEstimator.txx (new 431), itkGaussianDistribution.cxx (new 482), itkGaussianDistribution.h (new 240), itkGaussianMembershipFunction.h (new 112), itkGaussianMembershipFunction.txx (new 188), itkGaussianMixtureModelComponent.h (new 119), itkGaussianMixtureModelComponent.txx (new 312), itkHistogram.h (new 493), itkHistogram.txx (new 746), itkHistogramToTextureFeaturesFilter.h (new 220), itkHistogramToTextureFeaturesFilter.txx (new 451), itkImageClassifierFilter.h (new 176), itkImageClassifierFilter.txx (new 210), itkImageToHistogramFilter.h (new 163), itkImageToHistogramFilter.txx (new 147), itkImageToListSampleAdaptor.h (new 300), itkImageToListSampleAdaptor.txx (new 142), itkImageToListSampleFilter.h (new 144), itkImageToListSampleFilter.txx (new 228), itkJointDomainImageToListSampleAdaptor.h (new 369), itkJointDomainImageToListSampleAdaptor.txx (new 169), itkKdTree.h (new 760), itkKdTree.txx (new 665), itkKdTreeBasedKmeansEstimator.h (new 324), itkKdTreeBasedKmeansEstimator.txx (new 506), itkKdTreeGenerator.h (new 204), itkKdTreeGenerator.txx (new 245), itkListSample.h (new 285), itkListSample.txx (new 162), itkMahalanobisDistanceMembershipFunction.h (new 143), itkMahalanobisDistanceMembershipFunction.txx (new 257), itkMahalanobisDistanceMetric.h (new 139), itkMahalanobisDistanceMetric.txx (new 237), itkManhattanDistanceMetric.h (new 75), itkManhattanDistanceMetric.txx (new 71), itkMaximumDecisionRule2.cxx (new 46), itkMaximumDecisionRule2.h (new 65), itkMaximumRatioDecisionRule2.cxx (new 103), itkMaximumRatioDecisionRule2.h (new 92), itkMeanSampleFilter.h (new 105), itkMeanSampleFilter.txx (new 150), itkMeasurementVectorTraits.h (new 708), itkMembershipFunctionBase.h (new 120), itkMembershipSample.h (new 314), itkMembershipSample.txx (new 170), itkMinimumDecisionRule2.cxx (new 46), itkMinimumDecisionRule2.h (new 65), itkMixtureModelComponentBase.h (new 166), itkMixtureModelComponentBase.txx (new 186), itkNeighborhoodSampler.h (new 93), itkNeighborhoodSampler.txx (new 80), itkNormalVariateGenerator.cxx (new 361), itkNormalVariateGenerator.h (new 148), itkPointSetToListSampleAdaptor.h (new 283), itkPointSetToListSampleAdaptor.txx (new 131), itkProbabilityDistribution.h (new 171), itkRandomVariateGeneratorBase.h (new 55), itkSample.h (new 199), itkSampleClassifierFilter.h (new 163), itkSampleClassifierFilter.txx (new 217), itkSampleToHistogramFilter.h (new 149), itkSampleToHistogramFilter.txx (new 325), itkSampleToSubsampleFilter.h (new 101), itkSampleToSubsampleFilter.txx (new 97), itkScalarImageToCooccurrenceListSampleFilter.h (new 131), itkScalarImageToCooccurrenceListSampleFilter.txx (new 191), itkScalarImageToCooccurrenceMatrixFilter.h (new 211), itkScalarImageToCooccurrenceMatrixFilter.txx (new 413), itkScalarImageToHistogramGenerator.h (new 133), itkScalarImageToHistogramGenerator.txx (new 124), itkScalarImageToTextureFeaturesFilter.h (new 230), itkScalarImageToTextureFeaturesFilter.txx (new 357), itkSparseFrequencyContainer2.cxx (new 97), itkSparseFrequencyContainer2.h (new 112), itkStandardDeviationPerComponentSampleFilter.h (new 116), itkStandardDeviationPerComponentSampleFilter.txx (new 243), itkStatisticsAlgorithm.h (new 149), itkStatisticsAlgorithm.txx (new 708), itkSubsample.h (new 286), itkSubsample.txx (new 249), itkTDistribution.cxx (new 407), itkTDistribution.h (new 212), itkWeightedCentroidKdTreeGenerator.h (new 125), itkWeightedCentroidKdTreeGenerator.txx (new 148), itkWeightedCovarianceSampleFilter.h (new 113), itkWeightedCovarianceSampleFilter.txx (new 288), itkWeightedMeanSampleFilter.h (new 105), itkWeightedMeanSampleFilter.txx (new 207)
• Examples: CMakeLists.txt (+4 -1)
• Examples/Registration: CMakeLists.txt (+5 -3)
• Testing/Code/Algorithms: itkOtsuMultipleThresholdsCalculatorTest.cxx (+6 -2)
• Testing/Code/BasicFilters: itkRelabelComponentImageFilterTest.cxx (+8 -2)
• Testing/Code/Numerics: CMakeLists.txt (+3 -1)
• Testing/Code/Numerics/NeuralNetworks: RBFTest1.cxx (+14 -5)
• Testing/Code/Review/Statistics: CMakeLists.txt (new 286), itkChiSquareDistributionTest.cxx (new 564), itkCovarianceSampleFilterTest.cxx (new 182), itkCovarianceSampleFilterTest2.cxx (new 305), itkCovarianceSampleFilterTest3.cxx (new 210), itkDecisionRuleTest.cxx (new 101), itkDenseFrequencyContainer2Test.cxx (new 152), itkDistanceMetricTest.cxx (new 133), itkDistanceMetricTest2.cxx (new 124), itkDistanceToCentroidMembershipFunctionTest.cxx (new 120), itkEuclideanDistanceMetricTest.cxx (new 110), itkEuclideanSquareDistanceMetricTest.cxx (new 111), itkExpectationMaximizationMixtureModelEstimatorTest.cxx (new 202), itkGaussianDistributionTest.cxx (new 401), itkGaussianMembershipFunctionTest.cxx (new 103), itkGaussianMixtureModelComponentTest.cxx (new 150), itkHistogramTest.cxx (new 812), itkHistogramToTextureFeaturesFilterTest.cxx (new 339), itkImageClassifierFilterTest.cxx (new 308), itkImageToHistogramFilterTest.cxx (new 400), itkImageToHistogramFilterTest2.cxx (new 191), itkImageToListSampleAdaptorTest.cxx (new 333), itkImageToListSampleAdaptorTest2.cxx (new 274), itkImageToListSampleFilterTest.cxx (new 235), itkImageToListSampleFilterTest2.cxx (new 132), itkImageToListSampleFilterTest3.cxx (new 143), itkJointDomainImageToListSampleAdaptorTest.cxx (new 384), itkKdTreeBasedKmeansEstimatorTest.cxx (new 200), itkKdTreeGeneratorTest.cxx (new 231), itkKdTreeTest1.cxx (new 239), itkKdTreeTest2.cxx (new 158), itkKdTreeTestSamplePoints.cxx (new 210), itkListSampleTest.cxx (new 559), itkMahalanobisDistanceMetricTest.cxx (new 261), itkManhattanDistanceMetricTest.cxx (new 109), itkMaximumDecisionRuleTest.cxx (new 60), itkMaximumRatioDecisionRuleTest.cxx (new 133), itkMeanSampleFilterTest.cxx (new 128), itkMeasurementVectorTraitsTest.cxx (new 228), itkMembershipFunctionBaseTest.cxx (new 107), itkMembershipFunctionBaseTest2.cxx (new 111), itkMembershipSampleTest1.cxx (new 258), itkMembershipSampleTest2.cxx (new 261), itkMembershipSampleTest3.cxx (new 261), itkMembershipSampleTest4.cxx (new 262), itkMinimumDecisionRuleTest.cxx (new 60), itkMixtureModelComponentBaseTest.cxx (new 80), itkNeighborhoodSamplerTest1.cxx (new 199), itkNormalVariateGeneratorTest1.cxx (new 64), itkPointSetToListSampleAdaptorTest.cxx (new 299), itkProbabilityDistributionTest.cxx (new 79), itkRandomVariateGeneratorBaseTest.cxx (new 72), itkSampleClassifierFilterTest1.cxx (new 237), itkSampleClassifierFilterTest2.cxx (new 198), itkSampleClassifierFilterTest3.cxx (new 251), itkSampleClassifierFilterTest4.cxx (new 214), itkSampleClassifierFilterTest5.cxx (new 217), itkSampleClassifierFilterTest6.cxx (new 216), itkSampleClassifierFilterTest7.cxx (new 356), itkSampleTest.cxx (new 190), itkSampleTest2.cxx (new 209), itkSampleTest3.cxx (new 212), itkSampleTest4.cxx (new 211), itkSampleToHistogramFilterTest.cxx (new 798), itkSampleToHistogramFilterTest2.cxx (new 304), itkSampleToHistogramFilterTest3.cxx (new 220), itkSampleToHistogramFilterTest4.cxx (new 174), itkSampleToHistogramFilterTest5.cxx (new 175), itkSampleToHistogramFilterTest6.cxx (new 192), itkSampleToHistogramFilterTest7.cxx (new 220), itkSampleToSubsampleFilterTest1.cxx (new 124), itkScalarImageToCooccurrenceListSampleFilterTest.cxx (new 274), itkScalarImageToCooccurrenceMatrixFilterTest.cxx (new 411), itkScalarImageToCooccurrenceMatrixFilterTest2.cxx (new 333), itkScalarImageToTextureFeaturesFilterTest.cxx (new 363), itkSparseFrequencyContainer2Test.cxx (new 130), itkStandardDeviationPerComponentSampleFilterTest.cxx (new 205), itkStatisticsAlgorithmTest.cxx (new 160), itkStatisticsAlgorithmTest2.cxx (new 200), itkStatisticsHeaderTest.cxx (new 71), itkStatisticsPrintTest.cxx (new 293), itkStatisticsTests.cxx (new 131), itkStatisticsTypesTest.cxx (new 46), itkSubsampleTest.cxx (new 274), itkSubsampleTest2.cxx (new 346), itkSubsampleTest3.cxx (new 144), itkTDistributionTest.cxx (new 504), itkTestingMacros.h (new), itkWeightedCentroidKdTreeGeneratorTest1.cxx (new 231), itkWeightedCentroidKdTreeGeneratorTest8.cxx (new 235), itkWeightedCentroidKdTreeGeneratorTest9.cxx (new 236), itkWeightedCovarianceSampleFilterTest.cxx (new 391), itkWeightedMeanSampleFilterTest.cxx (new 263)
• Testing/Data/Baseline/Statistics: ImageClassifierFilterTestClassifiedImageTest.png (new)
• Testing/Data/Input/Statistics: TwoDimensionTwoGaussianTesting.dat (new 200), pointsForKdTree.txt (new 7), pointsForKdTree2.txt (new 31), pointsForQuickSelect1.txt (new 100), pointsForQuickSelect2.txt (new 10), pointsForQuickSelect3.txt (new 85)

(550 more)