<div dir="ltr"><div><div>Hello<br><br></div>If you have found a solution, it would be nice to share it for anyone having a similar problem in the future.<br><br></div>Best,<br></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr">Mathieu Westphal<br></div></div></div>
<br><div class="gmail_quote">On Fri, Oct 20, 2017 at 1:51 AM, Nick Torenvliet <span dir="ltr"><<a href="mailto:natorenvliet@gmail.com" target="_blank">natorenvliet@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Please disregard this question... obvious. <br></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Oct 19, 2017 at 7:29 PM, Nick Torenvliet <span dir="ltr"><<a href="mailto:natorenvliet@gmail.com" target="_blank">natorenvliet@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div> Hi all, <br><br></div>I am working through some examples and trying to add my own data. <br></div><div><br></div><div>I'm running VTK-8 on ubuntu 16.04. <br></div><div><br></div><div>The original examples code adds 8 cells, the example runs fine, <br></div><div>my hack of the example attempts to add 49000ish cells comes out with an error. <br></div><div><br></div><div>The following code:<br></div><div><div><div><div><div><br></div><div>    gap_data_block = get_gap_data_block()<br></div><div>    voxelPoints = vtk.vtkPoints()<br>    voxelPoints.SetNumberOfPoints(<wbr>len(gap_data_block))<br>    voxelPoints.SetData(VN.numpy_t<wbr>o_vtk(gap_data_block, deep=True))<br></div><div><br></div><div>    print("len(gap_data_block))<br>    print(gap_data_block.shape)<br><br>    aVoxel = vtk.vtkVoxel()</div><div><br>    for i in range(len(gap_data_block[:, 0])):<br>        print(len(gap_data_block), i)<br>        aVoxel.GetPointIds().SetId(i, i)</div><div><br></div><div>Gives the following output and nasty error - what is going on here??</div><div><br></div><div>Output:<br></div>Length Gap Data Block: 49432<br><div>Shape Gap Data Block: (49432, 3)<br>0<br>1<br>2<br>.</div><div>.</div><div>.<br></div><div>1601<br>1602<br>*** Error in `/usr/local/bin/vtkpython': corrupted size vs. prev_size: 0x0000000002c884f0 ***<br>======= Backtrace: =========<br>/lib/x86_64-linux-gnu/libc.so.<wbr>6(+0x777e5)[0x7f491973f7e5]<br>/lib/x86_64-linux-gnu/libc.so.<wbr>6(+0x82aec)[0x7f491974aaec]<br>/lib/x86_64-linux-gnu/libc.so.<wbr>6(__libc_malloc+0x54)[0x7f4919<wbr>74c184]<br>/usr/lib/x86_64-linux-gnu/libp<wbr>ython3.5m.so.1.0(PyDict_New+<wbr>0xb)[0x7f49190f6a7b]<br>/usr/local/lib/libvtkWrappingP<wbr>ython35Core-8.0.so.1(<wbr>PyVTKObject_FromPointer+0x462)<wbr>[0x7f48f6425b3c]<br>/usr/local/lib/libvtkWrappingP<wbr>ython35Core-8.0.so.1(_ZN13vtkP<wbr>ythonUtil20GetObjectFromPointe<wbr>rEP13vtkObjectBase+0x4b5)[<wbr>0x7f48f64140e9]<br>/usr/local/lib/libvtkCommonCor<wbr>ePython35D-8.0.so.1(_ZN13vtkPy<wbr>thonArgs14BuildVTKObjectEPKv+<wbr>0x18)[0x7f48f677b90c]<br>/usr/local/lib/libvtkCommonDat<wbr>aModelPython35D-8.0.so.1(+<wbr>0x13d6ed)[0x7f48f39296ed]<br>/usr/lib/x86_64-linux-gnu/libp<wbr>ython3.5m.so.1.0(PyCFunction_<wbr>Call+0xc9)[0x7f49190ef039]<br>/usr/lib/x86_64-linux-gnu/libp<wbr>ython3.5m.so.1.0(PyEval_EvalFr<wbr>ameEx+0x7555)[0x7f49191fb1b5]<br>/usr/lib/x86_64-linux-gnu/libp<wbr>ython3.5m.so.1.0(PyEval_EvalFr<wbr>ameEx+0x79d9)[0x7f49191fb639]<br>/usr/lib/x86_64-linux-gnu/libp<wbr>ython3.5m.so.1.0(+0x24ac6c)[<wbr>0x7f491928bc6c]<br>/usr/lib/x86_64-linux-gnu/libp<wbr>ython3.5m.so.1.0(PyEval_EvalCo<wbr>deEx+0x23)[0x7f491928bd43]<br>/usr/lib/x86_64-linux-gnu/libp<wbr>ython3.5m.so.1.0(PyEval_EvalCo<wbr>de+0x1b)[0x7f49191f39cb]<br>/usr/lib/x86_64-linux-gnu/libp<wbr>ython3.5m.so.1.0(PyRun_StringF<wbr>lags+0x8f)[0x7f4919210e6f]<br>/usr/lib/x86_64-linux-gnu/libp<wbr>ython3.5m.so.1.0(PyRun_SimpleS<wbr>tringFlags+0x3b)[0x7f4919211ea<wbr>b]<br>/usr/lib/x86_64-linux-gnu/libp<wbr>ython3.5m.so.1.0(Py_Main+0x7c7<wbr>)[0x7f4919278d57]<br>/usr/local/bin/vtkpython(main+<wbr>0x527)[0x40200c]<br>/lib/x86_64-linux-gnu/libc.so.<wbr>6(__libc_start_main+0xf0)[0x7f<wbr>49196e8830]<br>/usr/local/bin/vtkpython(_star<wbr>t+0x29)[0x401989]<br>======= Memory map: ========<br>00400000-00404000 r-xp 00000000 08:35 32780695                      <wbr>     /usr/local/bin/vtkpython<br>00603000-00604000 r--p 00003000 08:35 32780695                      <wbr>     /usr/local/bin/vtkpython<br>00604000-00605000 rw-p 00004000 08:35 32780695                      <wbr>     /usr/local/bin/vtkpython<br>01d85000-06252000 rw-p 00000000 00:00 0                             <wbr>     [heap]<br>7f4896b0a000-7f4898205000 rw-p 00000000 00:00 0 <br>7f489f640000-7f489f680000 rw-p 00000000 00:00 0 <br>7f489fb00000-7f489fb40000 rw-p 00000000 00:00 0 <br>7f48a4000000-7f48a4229000 rw-p 00000000 00:00 0 <br>7f48a4229000-7f48a8000000 ---p 00000000 00:00 0 <br>7f48a8000000-7f48a9ce4000 rw-p 00000000 00:00 0 <br>7f48a9ce4000-7f48ac000000 ---p 00000000 00:00 0 <br>7f48ac000000-7f48adca1000 rw-p 00000000 00:00 0 <br>7f48adca1000-7f48b0000000 ---p 00000000 00:00 0 <br>7f48b2365000-7f48b23a5000 rw-p 00000000 00:00 0 <br>7f48b23a5000-7f48b23a8000 r-xp 00000000 08:35 32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ckages<wbr>/h5py/<a href="http://utils.cpython-35m-x86_64-linux-gnu.so" target="_blank">utils.cpython-35m-x86_<wbr>64-linux-gnu.so</a><br>7f48b9654000-7f48b9655000 r--p 00008000 08:35 38939150                   /usr/lib/python3/dist-packages<wbr>/h5py/<a href="http://utils.cpython-35m-x86_64-linux-gnu.so" target="_blank">utils.cpython-35m-x86_<wbr>64-linux-gnu.so</a><br>7f48b9655000-7f48b9656000 rw-p 00009000 08:35 38939150                   /usr/lib/python3/dist-packages<wbr>/h5py/<a href="http://utils.cpython-35m-x86_64-linux-gnu.so" target="_blank">utils.cpython-35m-x86_<wbr>64-linux-gnu.so</a><br>7f48b9656000-7f48b9696000 rw-p 00000000 00:00 0 <br>7f48b9696000-7f48b96d9000 r-xp 00000000 08:35 38939100                   /usr/lib/python3/dist-packages<wbr>/h5py/<a href="http://h5t.cpython-35m-x86_64-linux-gnu.so" target="_blank">h5t.cpython-35m-x86_64-<wbr>linux-gnu.so</a><br>7f48b96d9000-7f48b98d8000 ---p 00043000 08:35 38939100                   /usr/lib/python3/dist-packages<wbr>/h5py/<a href="http://h5t.cpython-35m-x86_64-linux-gnu.so" target="_blank">h5t.cpython-35m-x86_64-<wbr>linux-gnu.so</a><br>7f48b98d8000-7f48b98d9000 r--p 00042000 08:35 38939100                   /usr/lib/python3/dist-packages<wbr>/h5py/<a href="http://h5t.cpython-35m-x86_64-linux-gnu.so" target="_blank">h5t.cpython-35m-x86_64-<wbr>linux-gnu.so</a><br>7f48b98d9000-7f48b98e3000 rw-p 00043000 08:35 38939100                   /usr/lib/python3/dist-packages<wbr>/h5py/<a href="http://h5t.cpython-35m-x86_64-linux-gnu.so" target="_blank">h5t.cpython-35m-x86_64-<wbr>linux-gnu.so</a><br>7f48b98e3000-7f48b9901000 r-xp 00000000 08:35 32248272                   /usr/lib/x86_64-linux-gnu/libh<wbr>df5_serial_hl.so.10.0.2<br>7f48b9901000-7f48b9b00000 ---p 0001e000 08:35 32248272                   /usr/lib/x86_64-linux-gnu/libh<wbr>df5_serial_hl.so.10.0.2<br>7f48b9b00000-7f48b9b01000 r--p 0001d000 08:35 32248272                   /usr/lib/x86_64-linux-gnu/libh<wbr>df5_serial_hl.so.10.0.2<br>7f48b9b01000-7f48b9b02000 rw-p 0001e000 08:35 32248272                   /usr/lib/x86_64-linux-gnu/libh<wbr>df5_serial_hl.so.10.0.2<br>7f48b9b02000-7f48b9b03000 rw-p 00000000 00:00 0 <br>7f48b9b03000-7f48b9b2b000 r-xp 00000000 08:35 38939110                   /usr/lib/python3/dist-packages<wbr>/h5py/<a href="http://defs.cpython-35m-x86_64-linux-gnu.so" target="_blank">defs.cpython-35m-x86_64-<wbr>linux-gnu.so</a><br>7f48b9b2b000-7f48b9d2a000 ---p 00028000 08:35 38939110                   /usr/lib/python3/dist-packages<wbr>/h5py/<a href="http://defs.cpython-35m-x86_64-linux-gnu.so" target="_blank">defs.cpython-35m-x86_64-<wbr>linux-gnu.so</a><br>7f48b9d2a000-7f48b9d2b000 r--p 00027000 08:35 38939110                   /usr/lib/python3/dist-packages<wbr>/h5py/<a href="http://defs.cpython-35m-x86_64-linux-gnu.so" target="_blank">defs.cpython-35m-x86_64-<wbr>linux-gnu.so</a><br>7f48b9d2b000-7f48b9d2d000 rw-p 00028000 08:35 38939110                   /usr/lib/python3/dist-packages<wbr>/h5py/<a href="http://defs.cpython-35m-x86_64-linux-gnu.so" target="_blank">defs.cpython-35m-x86_64-<wbr>linux-gnu.so</a><br>7f48b9d2d000-7f48b9d43000 r-xp 00000000 08:35 38939146                   /usr/lib/python3/dist-packages<wbr>/h5py/_<a href="http://objects.cpython-35m-x86_64-linux-gnu.so" target="_blank">objects.cpython-35m-<wbr>x86_64-linux-gnu.so</a><br>7f48b9d43000-7f48b9f42000 ---p 00016000 08:35 38939146                   /usr/lib/python3/dist-packages<wbr>/h5py/_<a href="http://objects.cpython-35m-x86_64-linux-gnu.so" target="_blank">objects.cpython-35m-<wbr>x86_64-linux-gnu.so</a><br>7f48b9f42000-7f48b9f43000 r--p 00015000 08:35 38939146                   /usr/lib/python3/dist-packages<wbr>/h5py/_objects.cpython-35m-<wbr>x86_64-linux-gnu.soAborted (core dumped)<br><br></div></div></div></div></div></div>
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