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<div class="moz-cite-prefix">Hi,<br>
<br>
I have been able to reproduce the problem ( vtkWrapPython error )
on a CentOS 7 machine with the following :<br>
<br>
cmake3 //d4-2/VTK/VTK-7.1.1 # Note the double // which kind of
match you //home/alam38 .....<br>
<br>
May you should try reconfigure with /home/alam38 ( or understand
how/why you get //home/alam38 ).<br>
<br>
Running the vtkWrapPython command alone with or without the //
shows the problem.<br>
<br>
[turlais@wk6 Python]$ pwd<br>
/d4-2/VTK/BLD/Wrapping/Python<br>
<br>
[turlais@wk6 Python]$ ../../bin/vtkWrapPython-7.1
@/d4-2/VTK/BLD/Wrapping/Python/vtkCommonCorePython.Debug.args -o
/d4-2/VTK/BLD/Wrapping/Python/vtkAbstractArrayPython.cxx
/d4-2/VTK/VTK-7.1.1/Common/Core/vtkAbstractArray.h<br>
<br>
[turlais@wk6 Python]$ ../../bin/vtkWrapPython-7.1
@/d4-2/VTK/BLD/Wrapping/Python/vtkCommonCorePython.Debug.args -o
//d4-2/VTK/BLD/Wrapping/Python/vtkAbstractArrayPython.cxx
/d4-2/VTK/VTK-7.1.1/Common/Core/vtkAbstractArray.h<br>
Usage: vtkWrapPython-7.1 [options] infile... <br>
--help print this help message<br>
--version print the VTK version<br>
-o <file> the output file<br>
-I <dir> add an include directory<br>
-D <macro[=def]> define a preprocessor macro<br>
-U <macro> undefine a preprocessor macro<br>
@<file> read arguments from a file<br>
--hints <file> the hints file to use<br>
--types <file> the type hierarchy file to use<br>
--concrete force concrete class (ignored, deprecated)<br>
--abstract force abstract class (ignored, deprecated)<br>
--vtkobject vtkObjectBase-derived class (ignored,
deprecated)<br>
--special non-vtkObjectBase class (ignored, deprecated)<br>
<br>
Regards,<br>
Pierre TURLAIS<br>
<br>
On 04/12/2017 09:04 PM, Andrew Lam wrote:<br>
</div>
<blockquote
cite="mid:CAPY4ZcE2HR-83ffiWNp4ksVpJN4ECKCVCA6eZxgzCtCVBMirBQ@mail.gmail.com"
type="cite">
<div dir="ltr">David,
<div><br>
</div>
<div>Oh you're right. When I run those search commands I get.</div>
<div><br>
</div>
<div>
<div>alam38@unix2:~ $ whereis python</div>
<div>python: /usr/bin/python2.7 /usr/bin/python
/usr/bin/python2.7-config /usr/bin/python3.4
/usr/bin/python3.4m
/usr/bin/python3.4m-x86_64-config /usr/bin/python3.4-config
/usr/bin/python3.4m-config /usr/lib/python2.7
/usr/lib/python3.4 /usr/lib64/python3.4 /usr/lib64/python2.7
/etc/python /usr/include/python2.7 /usr/include/python3.4m
/opt/anaconda3/bin/python /opt/anaconda3/bin/python3.5
/opt/anaconda3/bin/python3.5-config
/opt/anaconda3/bin/python3.5m
/opt/anaconda3/bin/python3.5m-config
/usr/share/man/man1/python.1.gz</div>
<div>alam38@unix2:~ $ whereis python2.7</div>
<div>python2: /usr/bin/python2.7 /usr/bin/python2
/usr/bin/python2.7-config /usr/lib/python2.7
/usr/lib64/python2.7 /usr/include/python2.7
/usr/share/man/man1/python2.1.gz</div>
<div>alam38@unix2:~ $ whereis c++</div>
<div>c++: /usr/bin/c++ /usr/include/c++</div>
</div>
<div><br>
</div>
<div>So they are definitely in usr/bin/ and not just bin/. do
you think just changing the paths in the CMakeCache.txt would
fix my issues?</div>
<div><br>
</div>
<div>Thanks,</div>
<div>Andrew</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Wed, Apr 12, 2017 at 7:00 PM, David
Gobbi <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:david.gobbi@gmail.com" target="_blank">david.gobbi@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">Hi Andrew,
<div><br>
</div>
<div>It seems to be an up-to-date linux system, but it
also seems to be customized.</div>
<div><br>
</div>
<div>In the CMakeLists.txt file, there are some values
that might cause problems:</div>
<div><br>
</div>
<div> PYTHON_EXECUTABLE:FILEPATH=/<wbr>bin/python2</div>
<div> PYTHON_INCLUDE_DIR:PATH=/<wbr>usr/include/python2.7</div>
<div><br>
</div>
<div>Usually, python is in "/usr/bin/python" or
"/usr/bin/python2" on linux, especially if the include
files are in /usr/include/pythonx.y.</div>
<div><br>
</div>
<div>You can type "whereis python" and "whereis python
2.7" to find out all the places where python has been
installed on the system. If there is a python in
/usr/bin, that's probably the one you want.</div>
<div><br>
</div>
<div>Also do "whereis c++" to see if someone has installed
a c++ on the system that is different from the original
one that came from the RedHat distro. Usually, c++ is
in /usr/bin/c++ or /usr/local/bin/c++, but your
CMakeCache.txt lists it as being in /bin/c++.</div>
<div><br>
</div>
<div>Other than the fact that python and gcc are installed
in strange places, the CMakeCache.txt looks fine.</div>
<div><br>
</div>
<div> - David</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Wed, Apr 12, 2017 at 7:11 PM,
Andrew Lam <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:werdna.mal222@gmail.com"
target="_blank">werdna.mal222@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">David,
<div><br>
</div>
<div>This is what I get running the commands you
told me to</div>
<div><br>
</div>
<div>
<div>alam38@unix2:~ $ uname -v</div>
<div> #1 SMP Fri Mar 3 00:04:05 UTC 2017</div>
<div>alam38@unix2:~ $ lsb_release -a</div>
<div> -bash: lsb_release: command not found</div>
<div>alam38@unix2:~ $ c++ --version</div>
<div> c++ (GCC) 4.8.5 20150623 (Red Hat
4.8.5-11)</div>
<div> Copyright (C) 2015 Free Software
Foundation, Inc.</div>
<div> This is free software; see the source for
copying conditions. There is NO</div>
<div> warranty; not even for MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE.</div>
</div>
<div><br>
</div>
<div>I've attached the CMakeCache.txt file</div>
<div><br>
</div>
<div>Thanks,</div>
<div>Andrew</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Wed, Apr 12, 2017 at
6:04 PM, David Gobbi <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:david.gobbi@gmail.com"
target="_blank">david.gobbi@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0
0 .8ex;border-left:1px #ccc
solid;padding-left:1ex">
<div dir="ltr">Hi Andrew,
<div><br>
</div>
<div>Every version of VTK from VTK 5 onwards
has been tested with python 2.7 on various
operating systems. So the question here is
what is different about your system, that
causes the build to fail?</div>
<div><br>
</div>
<div>The following commands will give info
about your system:</div>
<div><br>
</div>
<div>uname -v<br>
</div>
<div>lsb_release -a<br>
</div>
<div>c++ --version</div>
<div>which c++</div>
<div><br>
</div>
<div>Also, you can attach your CMakeCache.txt
file, which provides a lot of information
about your system.</div>
<div><br>
</div>
<div> - David</div>
<div><br>
</div>
<div><br>
</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Wed, Apr 12, 2017
at 6:49 PM, Andrew Lam <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:werdna.mal222@gmail.com"
target="_blank">werdna.mal222@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote"
style="margin:0 0 0 .8ex;border-left:1px
#ccc solid;padding-left:1ex">
<div dir="ltr">Hi David,
<div><br>
</div>
<div>I've done iterated through this a
couple times around jumping from using
a tar file for VTK and getting it from
github. Same with recreating the build
directory. But I will try again. Do
you think VTK version would matter? I
know some kids in my class could not
get VTK working with python 2.7 until
they switched to VTK 6.3. I tried that
once with no success, but do you think
that would be a route worth
investigating more?</div>
<div><br>
</div>
<div>Thanks,</div>
<div>Andrew</div>
<div><br>
</div>
<div><br>
</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Wed, Apr 12,
2017 at 5:43 PM, David Gobbi <span
dir="ltr"><<a
moz-do-not-send="true"
href="mailto:david.gobbi@gmail.com"
target="_blank">david.gobbi@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote"
style="margin:0 0 0
.8ex;border-left:1px #ccc
solid;padding-left:1ex">
<div dir="ltr">Hi Andrew,
<div><br>
</div>
<div>The contents of your file are
exactly as they should be. I
cannot see anything wrong with
the way that vtkWrapPython-7.1
is being called.</div>
<div><br>
</div>
<div>My advice is to do the
following:</div>
<div><br>
</div>
<div>1) Make sure that your VTK
source directory is clean. If
your source is from a tar file,
then delete your source
directory and un-tar the tar
file again.</div>
<div><br>
</div>
<div>2) Make sure that your build
directory is clean, i.e. delete
your build directory and start
over again.</div>
<div><br>
</div>
<div>Hope this helps.</div>
<div><br>
</div>
<div> - David</div>
<div><br>
</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Wed,
Apr 12, 2017 at 6:27 PM, Andrew
Lam <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:werdna.mal222@gmail.com"
target="_blank">werdna.mal222@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote"
style="margin:0 0 0
.8ex;border-left:1px #ccc
solid;padding-left:1ex">
<div dir="ltr">
<div>
<div>
<div>David,<br>
<br>
</div>
It does exist on my
computer, It's a lot to
print out so I just
attached the file.
Please let me know what
you think.<br>
<br>
</div>
Thanks,<br>
</div>
Andrew<br>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On
Wed, Apr 12, 2017 at 2:49
PM, David Gobbi <span
dir="ltr"><<a
moz-do-not-send="true"
href="mailto:david.gobbi@gmail.com" target="_blank">david.gobbi@gmail.com</a>></span>
wrote:<br>
<blockquote
class="gmail_quote"
style="margin:0 0 0
.8ex;border-left:1px
#ccc
solid;padding-left:1ex">
<div dir="ltr">
<div>I meant check the
contents of <span
style="font-size:12.8px">/tmp/VTK-build/Wrapping/</span><span
style="font-size:12.8px">Pyt<wbr>hon/vtkCommonCorePython.</span><span
style="font-size:12.8px">Debug.<wbr>args
(the "@" is not
actually part of
the filename).</span></div>
<br>
<div
class="gmail_extra"><br>
<div
class="gmail_quote">On
Wed, Apr 12, 2017
at 2:31 PM, David
Gobbi <span
dir="ltr"><<a
moz-do-not-send="true" href="mailto:david.gobbi@gmail.com"
target="_blank">david.gobbi@gmail.com</a>></span>
wrote:<br>
<blockquote
class="gmail_quote"
style="margin:0px 0px 0px 0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div dir="ltr">Hi
Andrew,
<div><br>
</div>
<div>I think
vtkWrapPython
is having
trouble with
the "@" file.
Can you check
to see if <span
style="font-size:12.8px">@/tmp/VTK-build/Wrapping/</span><span
style="font-size:12.8px">Py<wbr>thon/vtkCommonCorePython.</span><span
style="font-size:12.8px">Debug<wbr>.args exists on your computer, and if
it does, can
you print out
the contents?</span></div>
<div><span
style="font-size:12.8px"><br>
</span></div>
<div><span
style="font-size:12.8px"> -
David</span></div>
</div>
<div
class="gmail_extra"><br>
<div
class="gmail_quote">On
Wed, Apr 12,
2017 at 2:21
PM, Andrew Lam
<span
dir="ltr"><<a
moz-do-not-send="true" href="mailto:werdna.mal222@gmail.com"
target="_blank">werdna.mal222@gmail.com</a>></span>
wrote:<br>
<blockquote
class="gmail_quote"
style="margin:0px 0px 0px 0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div dir="ltr">
<div>
<div>
<div>
<div>David,<br>
<br>
</div>
I ran it in
verbose as you
suggested<br>
<font
color="#500050"><span
style="font-size:12.8px"><br>
VERBOSE=1 make</span></font><br>
<br>
</div>
and there was
a lot of
output. I
believe the
section that
is relevant is
this<br>
<br>
make -f
Wrapping/Python/CMakeFiles/vtk<wbr>CommonCorePythonD.dir/<a
moz-do-not-send="true" href="http://build.ma" target="_blank">build.ma</a><wbr>ke
Wrapping/Python/CMakeFiles/vtk<wbr>CommonCorePythonD.dir/depend<br>
make[2]:
Entering
directory
`/tmp/VTK-build'<br>
[ 62%] Python
Wrapping -
generating
vtkAbstractArrayPython.cxx<br>
cd
/tmp/VTK-build/Wrapping/Python
&&
../../bin/vtkWrapPython-7.1
@/tmp/VTK-build/Wrapping/Pytho<wbr>n/<a moz-do-not-send="true"
href="http://vtkCommonCorePython.Debug.ar"
target="_blank">vtkCommonCorePython.Debug.ar</a><wbr>gs -o
/tmp/VTK-build/Wrapping/Python<wbr>/vtkAbstractArrayPython.cxx
//home/alam38/projects/VTK/Com<wbr>mon/Core/vtkAbstractArray.h<br>
Usage:
vtkWrapPython-7.1
[options]
infile... <br>
--help
print this
help message<br>
--version
print the VTK
version<br>
-o
<file>
the output
file<br>
-I
<dir>
add an include
directory<br>
-D
<macro[=def]>
define a
preprocessor
macro<br>
-U
<macro>
undefine a
preprocessor
macro<br>
@<file>
read arguments
from a file<br>
--hints
<file>
the hints file
to use<br>
--types
<file>
the type
hierarchy file
to use<br>
--concrete
force concrete
class
(ignored,
deprecated)<br>
--abstract
force abstract
class
(ignored,
deprecated)<br>
--vtkobject
vtkObjectBase-derived class (ignored, deprecated)<br>
--special
non-vtkObjectBase class (ignored, deprecated)<br>
make[2]: ***
[Wrapping/Python/vtkAbstractAr<wbr>rayPython.cxx]
Error 1<br>
make[2]:
Leaving
directory
`/tmp/VTK-build'<br>
make[1]: ***
[Wrapping/Python/CMakeFiles/vt<wbr>kCommonCorePythonD.dir/all]
Error 2<br>
make[1]:
Leaving
directory
`/tmp/VTK-build'<br>
make: ***
[all] Error 2<br>
<br>
</div>
it was at the
very end and
had VTKWrap
Python. I'm
not sure where
to look to see
how Make
called VTKWrap
Python like
you said, but
hopefully you
see it in
here. Please
let me know if
you need more
information or
you see
something
important.<br>
<br>
</div>
<div>Thanks,<br>
</div>
<div>Andrew<br>
</div>
</div>
<div
class="gmail_extra"><br>
<div
class="gmail_quote">On
Wed, Apr 12,
2017 at 1:13
PM, Andrew Lam
<span
dir="ltr"><<a
moz-do-not-send="true" href="mailto:werdna.mal222@gmail.com"
target="_blank">werdna.mal222@gmail.com</a>></span>
wrote:<br>
<blockquote
class="gmail_quote"
style="margin:0px 0px 0px 0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div dir="ltr">
<div>
<div>
<div>
<div>Andy,<br>
<br>
</div>
I think you
might be onto
something as
it progressed
to 62% this
time, but it
is still
feeding me the
same error.
Make, just
finished. I'm
going to jump
on David's
suggestion and
report back
with that
right now.<br>
<br>
</div>
the output was<br>
<br>
[ 20%] Built
target VTKData<br>
[ 20%] Built
target
kwiml_test<br>
[ 20%] Built
target vtksys<br>
[ 20%] Built
target
vtkWrappingTools<br>
[ 20%] Built
target
vtkWrapHierarchy<br>
[ 21%] Built
target
vtkCommonCore<br>
[ 21%] Built
target
vtkCommonMath<br>
[ 21%] Built
target
vtkCommonMisc<br>
[ 21%] Built
target
vtkCommonSystem<br>
[ 21%] Built
target
vtkCommonTransforms<br>
[ 23%] Built
target
vtkCommonDataModel<br>
[ 23%] For
vtkCommonColor
- updating
vtkCommonColorHierarchy.txt<br>
Scanning
dependencies
of target
vtkCommonColor<br>
[ 23%]
Building CXX
object
Common/Color/CMakeFiles/vtkCom<wbr>monColor.dir/vtkColorSeries.cx<wbr>x.o<br>
[ 23%]
Building CXX
object
Common/Color/CMakeFiles/vtkCom<wbr>monColor.dir/vtkNamedColors.cx<wbr>x.o<br>
[ 23%] Linking
CXX shared
library
../../lib/<a
moz-do-not-send="true"
href="http://libvtkCommonColor-7.1.so" target="_blank">libvtkCommonColor-7.<wbr>1.so</a><br>
[ 23%] Built
target
vtkCommonColor<br>
[ 23%] For
vtkCommonExecutionModel
- updating
vtkCommonExecutionModelHierarc<wbr>hy.txt<br>
Scanning
dependencies
of target
vtkCommonExecutionModel<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkAlgorithm.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkAlgorithmOutput.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkAnnotationLayersAlgorithm.<wbr>cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkArrayDataAlgorithm.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkCachedStreamingDemandDrive<wbr>nPipeline.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkCastToConcrete.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkCompositeDataPipeline.cxx.<wbr>o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkCompositeDataSetAlgorithm.<wbr>cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkDataObjectAlgorithm.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkDataSetAlgorithm.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkDemandDrivenPipeline.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkDirectedGraphAlgorithm.cxx<wbr>.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkEnsembleSource.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkExecutive.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkExtentSplitter.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkExtentTranslator.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkFilteringInformationKeyMan<wbr>ager.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkGraphAlgorithm.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkHierarchicalBoxDataSetAlgo<wbr>rithm.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkHyperOctreeAlgorithm.cxx.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkHyperTreeGridAlgorithm.cxx<wbr>.o<br>
[ 23%]
Building CXX
object
Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkImageAlgorithm.cxx.o<br>
[ 23%]
Building CXX
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Common/ExecutionModel/CMakeFil<wbr>es/vtkCommonExecutionModel.dir<wbr>/vtkImageInPlaceFilter.cxx.o<br>
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[ 34%] Built
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[ 35%] Built
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[ 35%] Built
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[ 35%] For
vtkIOInfovis -
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[ 35%]
Building CXX
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[ 35%]
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[ 36%] Built
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[ 36%] Built
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vtkDICOMParser<br>
[ 36%] Built
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[ 36%] Built
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[ 36%] Built
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[ 36%] For
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[ 36%]
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[ 36%]
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[ 36%] Linking
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[ 36%] Built
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vtkIOImage<br>
[ 36%] Built
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vtkEncodeString<br>
[ 36%] Built
target vtkglew<br>
[ 36%] For
vtkRenderingOpenGL2
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[ 36%]
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vtkDepthOfFieldPassFS.cxx,
vtkDepthOfFieldPassFS.h<br>
[ 36%]
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vtkDepthPeelingPassFinalFS.cxx<wbr>,
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Generating
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vtkDepthPeelingPassIntermediat<wbr>eFS.h<br>
[ 36%]
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vtkEDLBilateralFilterFS.cxx,
vtkEDLBilateralFilterFS.h<br>
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vtkFiltersHyperTree<br>
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[ 62%] Built
target
vtkpython_pyc<br>
[ 62%] Python
Wrapping -
generating
vtkAbstractArrayPython.cxx<br>
Usage:
vtkWrapPython-7.1
[options]
infile... <br>
--help
print this
help message<br>
--version
print the VTK
version<br>
-o
<file>
the output
file<br>
-I
<dir>
add an include
directory<br>
-D
<macro[=def]>
define a
preprocessor
macro<br>
-U
<macro>
undefine a
preprocessor
macro<br>
@<file>
read arguments
from a file<br>
--hints
<file>
the hints file
to use<br>
--types
<file>
the type
hierarchy file
to use<br>
--concrete
force concrete
class
(ignored,
deprecated)<br>
--abstract
force abstract
class
(ignored,
deprecated)<br>
--vtkobject
vtkObjectBase-derived class (ignored, deprecated)<br>
--special
non-vtkObjectBase class (ignored, deprecated)<br>
make[2]: ***
[Wrapping/Python/vtkAbstractAr<wbr>rayPython.cxx]
Error 1<br>
make[1]: ***
[Wrapping/Python/CMakeFiles/vt<wbr>kCommonCorePythonD.dir/all]
Error 2<br>
make: ***
[all] Error 2<br>
<br>
</div>
Thanks,<br>
</div>
Andrew<br>
</div>
<div
class="gmail_extra"><br>
<div
class="gmail_quote">On
Wed, Apr 12,
2017 at 12:32
PM, David
Gobbi <span
dir="ltr"><<a
moz-do-not-send="true" href="mailto:david.gobbi@gmail.com"
target="_blank">david.gobbi@gmail.com</a>></span>
wrote:<br>
<blockquote
class="gmail_quote"
style="margin:0px 0px 0px 0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div dir="ltr">According
to the "make"
output, <span
style="color:rgb(80,0,80);font-size:12.8px">vtkWrapPython is being
called with
the wrong
arguments. In
order to see
what arguments
are being
used, it will
be necessary
to build in
"verbose"
mode. You can
build in
verbose mode
by typing this
into the
terminal:</span>
<div><font
color="#500050"><span
style="font-size:12.8px"><br>
</span></font></div>
<div><font
color="#500050"><span
style="font-size:12.8px">VERBOSE=1 make<br>
</span></font>
<div><span
style="color:rgb(80,0,80);font-size:12.8px"><br>
</span></div>
<div><span
style="color:rgb(80,0,80);font-size:12.8px">There
will be tons
of output in
verbose mode,
but you can
search the
output for
vtkWrapPython
to see how it
is being
called by
make.</span></div>
<span
class="m_9199926019498610730m_5945698716030005024m_2378673855846331941m_1859179870431666348m_-334460753213303636m_3841743989057641559m_-2410469543278636499gmail-m_5341764560299936656m_7270589648675513673m_-3119493428167358854HOEnZb"><font
color="#888888">
<div><span
style="color:rgb(80,0,80);font-size:12.8px"><br>
</span></div>
<div><span
style="color:rgb(80,0,80);font-size:12.8px"> -
David</span></div>
<div><span
style="color:rgb(80,0,80);font-size:12.8px"><br>
</span></div>
<div><span
style="color:rgb(80,0,80);font-size:12.8px"><br>
</span></div>
</font></span></div>
</div>
<div
class="m_9199926019498610730m_5945698716030005024m_2378673855846331941m_1859179870431666348m_-334460753213303636m_3841743989057641559m_-2410469543278636499gmail-m_5341764560299936656m_7270589648675513673m_-3119493428167358854HOEnZb">
<div
class="m_9199926019498610730m_5945698716030005024m_2378673855846331941m_1859179870431666348m_-334460753213303636m_3841743989057641559m_-2410469543278636499gmail-m_5341764560299936656m_7270589648675513673m_-3119493428167358854h5">
<div
class="gmail_extra"><br>
<div
class="gmail_quote">On
Wed, Apr 12,
2017 at 1:27
PM, Andy Bauer
<span
dir="ltr"><<a
moz-do-not-send="true" href="mailto:andy.bauer@kitware.com"
target="_blank">andy.bauer@kitware.com</a>></span>
wrote:<br>
<blockquote
class="gmail_quote"
style="margin:0px 0px 0px 0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div dir="ltr">Can
you try
building with
a single
process (i.e.
just "make"
instead of
"make -j 4")
and share that
output? It's a
long shot but
maybe with the
system times
messed up a
dependency
isn't
available yet
that the build
process thinks
has finished.<br>
</div>
<div
class="m_9199926019498610730m_5945698716030005024m_2378673855846331941m_1859179870431666348m_-334460753213303636m_3841743989057641559m_-2410469543278636499gmail-m_5341764560299936656m_7270589648675513673m_-3119493428167358854m_-254524824673692647HOEnZb">
<div
class="m_9199926019498610730m_5945698716030005024m_2378673855846331941m_1859179870431666348m_-334460753213303636m_3841743989057641559m_-2410469543278636499gmail-m_5341764560299936656m_7270589648675513673m_-3119493428167358854m_-254524824673692647h5">
<div
class="gmail_extra"><br>
<div
class="gmail_quote">On
Wed, Apr 12,
2017 at 3:20
PM, Andrew Lam
<span
dir="ltr"><<a
moz-do-not-send="true" href="mailto:werdna.mal222@gmail.com"
target="_blank">werdna.mal222@gmail.com</a>></span>
wrote:<br>
<blockquote
class="gmail_quote"
style="margin:0px 0px 0px 0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div dir="ltr">
<div>
<div>
<div>
<div>Cory,<br>
<br>
</div>
I ran make
again and this
is the full
output.<br>
<br>
alam38@csc235x22:/tmp/VTK-buil<wbr>d $ make -j4<br>
[ 0%] Built
target
kwiml_test<br>
[ 0%] Built
target
vtkWrappingTools<br>
[ 0%] Built
target vtksys<br>
[ 0%] Built
target
vtkalglib<br>
[ 1%] Built
target vtklz4<br>
[ 2%] Built
target vtkzlib<br>
[ 2%] Built
target
vtkexpat<br>
[ 2%] Built
target
vtkDICOMParser<br>
[ 2%] Built
target
vtkEncodeString<br>
[ 2%] Built
target vtkpng<br>
[ 2%] Built
target vtkglew<br>
[ 2%] Built
target
vtkHashSource<br>
[ 2%] Built
target vtkjpeg<br>
[ 2%] Built
target
H5make_libsettings<br>
[ 2%] Built
target
vtkWrapTcl<br>
[ 2%] Built
target
H5detect<br>
[ 2%] Built
target
vtkParseJava<br>
[ 2%] Built
target
vtkWrapPythonInit<br>
[ 2%] Built
target
vtkWrapTclInit<br>
[ 2%] Built
target
vtkWrapPython<br>
[ 2%] Built
target
vtkWrapJava<span><br>
[ 2%] Built
target
vtkjsoncpp<br>
[ 2%] Built
target verdict<br>
</span>[ 2%]
Built target
vtkgl2ps<br>
[ 2%] Built
target
vtksqlite<br>
[ 2%] Built
target
vtkWrapHierarchy<br>
[ 2%] Built
target
vtkoggtheora<br>
[ 4%] Built
target
vtkproj4<br>
[ 4%] Built
target
vtklibxml2<br>
[ 4%] Built
target
vtkmetaio<br>
[ 4%] Built
target vtktiff<br>
[ 5%] Built
target
vtkfreetype<br>
[ 6%] Built
target
vtkCommonCore<br>
[ 6%] Built
target
vtkCommonSystem<br>
[ 6%] Built
target
vtkCommonMath<br>
[ 6%] Built
target
vtkCommonMisc<br>
[ 8%] Built
target vtkhdf5<br>
[ 9%] Built
target
vtkWrappingPythonCore<br>
Scanning
dependencies
of target
vtkCommonMiscCxxTests<br>
[ 9%] Built
target
vtkCommonSystemCxxTests<br>
[ 9%] Built
target
vtkCommonTransforms<br>
[ 9%] Built
target
vtkpython<br>
[ 9%] Built
target
vtkhdf5_hl<br>
[ 9%] Python
Wrapping -
generating
vtkAbstractArrayPython.cxx<span><br>
Usage:
vtkWrapPython-7.1
[options]
infile... <br>
--help
print this
help message<br>
--version
print the VTK
version<br>
-o
<file>
the output
file<br>
-I
<dir>
add an include
directory<br>
-D
<macro[=def]>
define a
preprocessor
macro<br>
-U
<macro>
undefine a
preprocessor
macro<br>
@<file>
read arguments
from a file<br>
--hints
<file>
the hints file
to use<br>
--types
<file>
the type
hierarchy file
to use<br>
--concrete
force concrete
class
(ignored,
deprecated)<br>
--abstract
force abstract
class
(ignored,
deprecated)<br>
--vtkobject
vtkObjectBase-derived class (ignored, deprecated)<br>
--special
non-vtkObjectBase class (ignored, deprecated)<br>
make[2]: ***
[Wrapping/Python/vtkAbstractAr<wbr>rayPython.cxx]
Error 1<br>
</span><span>make[1]:
***
[Wrapping/Python/CMakeFiles/vt<wbr>kCommonCorePythonD.dir/all]
Error 2<br>
make[1]: ***
Waiting for
unfinished
jobs....<br>
</span>[ 9%]
For
vtkCommonDataModel
- updating
vtkCommonDataModelHierarchy.tx<wbr>t<br>
[ 9%]
Building CXX
object
Common/Misc/Testing/Cxx/CMakeF<wbr>iles/vtkCommonMiscCxxTests.dir<wbr>/vtkCommonMiscCxxTests.cxx.o<br>
[ 9%]
Building CXX
object
Common/Misc/Testing/Cxx/CMakeF<wbr>iles/vtkCommonMiscCxxTests.dir<wbr>/TestPolygonBuilder.cxx.o<br>
[ 9%]
Building CXX
object
Common/Misc/Testing/Cxx/CMakeF<wbr>iles/vtkCommonMiscCxxTests.dir<wbr>/TestPolygonBuilder2.cxx.o<br>
[ 29%] Built
target VTKData<br>
[ 29%]
Building CXX
object
Common/Misc/Testing/Cxx/CMakeF<wbr>iles/vtkCommonMiscCxxTests.dir<wbr>/TestPolygonBuilder3.cxx.o<br>
[ 29%]
Building CXX
object
Common/Misc/Testing/Cxx/CMakeF<wbr>iles/vtkCommonMiscCxxTests.dir<wbr>/TestPolygonBuilder4.cxx.o<br>
[ 29%]
Building CXX
object
Common/Misc/Testing/Cxx/CMakeF<wbr>iles/vtkCommonMiscCxxTests.dir<wbr>/UnitTestFunctionParser.cxx.o<br>
[ 29%] Linking
CXX executable
../../../../bin/vtkCommonMiscC<wbr>xxTests<br>
[ 29%] Built
target
vtkCommonMiscCxxTests<br>
Scanning
dependencies
of target
vtkCommonDataModel<br>
[ 29%]
Building CXX
object
Common/DataModel/CMakeFiles/vt<wbr>kCommonDataModel.dir/vtkAbstra<wbr>ctCellLinks.cxx.o<br>
[ 29%]
Building CXX
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Common/DataModel/CMakeFiles/vt<wbr>kCommonDataModel.dir/vtkAdjace<wbr>ntVertexIterator.cxx.o<br>
[ 29%]
Building CXX
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[ 29%]
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[ 29%]
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[ 29%]
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[ 29%]
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[ 29%]
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[ 29%]
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[ 29%]
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[ 30%]
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[ 30%]
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[ 30%]
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[ 30%]
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[ 30%]
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[ 30%]
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[ 30%]
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[ 31%] Linking
CXX shared
library
../../lib/<a
moz-do-not-send="true"
href="http://libvtkCommonDataModel-7.1.so" target="_blank">libvtkCommonDataMode<wbr>l-7.1.so</a><br>
[ 31%] Built
target
vtkCommonDataModel<span><br>
make: ***
[all] Error 2<br>
<br>
</span></div>
Please let me
know if you
see anything
that might
help.<br>
<br>
</div>
Thanks,<br>
</div>
Andrew<br>
</div>
<div
class="m_9199926019498610730m_5945698716030005024m_2378673855846331941m_1859179870431666348m_-334460753213303636m_3841743989057641559m_-2410469543278636499gmail-m_5341764560299936656m_7270589648675513673m_-3119493428167358854m_-254524824673692647m_2213228416699137804HOEnZb">
<div
class="m_9199926019498610730m_5945698716030005024m_2378673855846331941m_1859179870431666348m_-334460753213303636m_3841743989057641559m_-2410469543278636499gmail-m_5341764560299936656m_7270589648675513673m_-3119493428167358854m_-254524824673692647m_2213228416699137804h5">
<div
class="gmail_extra"><br>
<div
class="gmail_quote">On
Wed, Apr 12,
2017 at 11:52
AM, Cory
Quammen <span
dir="ltr"><<a
moz-do-not-send="true" href="mailto:cory.quammen@kitware.com"
target="_blank">cory.quammen@kitware.com</a>></span>
wrote:<br>
<blockquote
class="gmail_quote"
style="margin:0px 0px 0px 0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">Andrew,<br>
<br>
Can you
provide
additional
output from
make? There
ought to be<br>
additional
error messages
above those
you provided
that will
provide<br>
additional
clues.<br>
<br>
Thanks,<br>
Cory<br>
<div
class="m_9199926019498610730m_5945698716030005024m_2378673855846331941m_1859179870431666348m_-334460753213303636m_3841743989057641559m_-2410469543278636499gmail-m_5341764560299936656m_7270589648675513673m_-3119493428167358854m_-254524824673692647m_2213228416699137804m_-6368036390117638144HOEnZb">
<div
class="m_9199926019498610730m_5945698716030005024m_2378673855846331941m_1859179870431666348m_-334460753213303636m_3841743989057641559m_-2410469543278636499gmail-m_5341764560299936656m_7270589648675513673m_-3119493428167358854m_-254524824673692647m_2213228416699137804m_-6368036390117638144h5"><br>
On Wed, Apr
12, 2017 at
2:49 PM,
Andrew Lam
<<a
moz-do-not-send="true"
href="mailto:werdna.mal222@gmail.com" target="_blank">werdna.mal222@gmail.com</a>>
wrote:<br>
> Cory,<br>
><br>
> Sorry i'm
double
emailing you
Cory, I
realized
another error
that I missed<br>
> and I
forgot to
include the
mailing list
again.<br>
><br>
> I did
what you
suggested and
built in /tmp
this did get
rid of the
clock<br>
> skew
issues, but I
still have the
same make
issues from
before. The
last few<br>
> lines of
output are<br>
><br>
> --
Downloaded
object:<br>
>
"/tmp/VTK-build/ExternalData/O<wbr>bjects/MD5/63106c09179630b321d<wbr>1e52170dc7551"<br>
> [ 30%]
Built target
VTKData<br>
> make: ***
[all] Error 2<br>
><br>
>
everything
else above
that seemed
fine,except
for these
lines<br>
><br>
> make[2]:
***
[Wrapping/Python/vtkAngularPer<wbr>iodicDataArrayPython.cxx]
Error 1<br>
> make[1]:
***
[Wrapping/Python/CMakeFiles/vt<wbr>kCommonCorePythonD.dir/all]
Error<br>
> 2<br>
><br>
> and the
last line of
output.<br>
><br>
> make: ***
[all] Error 2<br>
><br>
> Thanks,<br>
> Andrew<br>
><br>
><br>
><br>
> On Wed,
Apr 12, 2017
at 11:46 AM,
Andrew Lam
<<a
moz-do-not-send="true"
href="mailto:werdna.mal222@gmail.com" target="_blank">werdna.mal222@gmail.com</a>><br>
> wrote:<br>
>><br>
>> Cory,<br>
>><br>
>> I did
what you
suggested and
built in /tmp
this did get
rid of the
clock<br>
>> skew
issues, but I
still have the
same make
issues from
before. The
last few<br>
>> lines
of output are<br>
>><br>
>> --
Downloaded
object:<br>
>>
"/tmp/VTK-build/ExternalData/O<wbr>bjects/MD5/63106c09179630b321d<wbr>1e52170dc7551"<br>
>> [
30%] Built
target VTKData<br>
>> make:
*** [all]
Error 2<br>
>><br>
>>
everything
else above
that seemed
fine. I think
the only issue
is the last<br>
>> line
of output.<br>
>><br>
>> make:
*** [all]
Error 2<br>
>><br>
>>
Thanks,<br>
>>
Andrew<br>
>><br>
>> On
Wed, Apr 12,
2017 at 11:23
AM, Cory
Quammen <<a
moz-do-not-send="true" href="mailto:cory.quammen@kitware.com"
target="_blank">cory.quammen@kitware.com</a>><br>
>>
wrote:<br>
>>><br>
>>>
Andrew,<br>
>>><br>
>>>
You could try
building in
/tmp on the
local machine.
That should<br>
>>>
eliminate the
clock skew
issues, then
you can see if
there is a<br>
>>>
VTK-specific
problem
preventing the
compilation.
It should be a
lot<br>
>>>
faster to
compile on the
local disk as
well.<br>
>>><br>
>>>
Cory<br>
>>><br>
>>>
On Wed, Apr
12, 2017 at
2:15 PM,
Andrew Lam
<<a
moz-do-not-send="true"
href="mailto:werdna.mal222@gmail.com" target="_blank">werdna.mal222@gmail.com</a>><br>
>>>
wrote:<br>
>>>
> Cory,<br>
>>>
><br>
>>>
> In my
case it is,
because I only
have a desktop
and not a
laptop and we<br>
>>>
> need<br>
>>>
> to demo
our projects
in class. I've
asked the
instructor for
help with<br>
>>>
> the<br>
>>>
> issue and
this is the
first time
he's teaching
the class and
he hasn't<br>
>>>
> built<br>
>>>
> VTK on
the school
servers.<br>
>>>
><br>
>>>
> Thanks,<br>
>>>
> Andrew<br>
>>>
><br>
>>>
> On Wed,
Apr 12, 2017
at 11:11 AM,
Cory Quammen<br>
>>>
> <<a
moz-do-not-send="true"
href="mailto:cory.quammen@kitware.com" target="_blank">cory.quammen@kitware.com</a>><br>
>>>
> wrote:<br>
>>>
>><br>
>>>
>>
Andrew,<br>
>>>
>><br>
>>>
>>
Typically,
servers like
the one on
which I assume
you are
compiling<br>
>>>
>> have
two types of
storage
available:<br>
>>>
>><br>
>>>
>> 1). A
network file
system that
you can access
on more than
one server<br>
>>>
>> and
perhaps a
personal
computer.
These
typically hold
a home
directory<br>
>>>
>> for
you and may be
backed up.<br>
>>>
>><br>
>>>
>> 2).
Local disks on
the server. It
is faster to
access these
disks<br>
>>>
>>
because they
are local. As
a result, at a
number of
computing
centers<br>
>>>
>> it is
often possible
to use these
disks to do
things like
compile<br>
>>>
>>
source code.
These disks
are typically
not backed up
- think of
them<br>
>>>
>> as
"scratch"
paper where
you do
somewhat
temporary
work.<br>
>>>
>><br>
>>>
>> Is it
necessary to
compile VTK on
the school
server? If so,
I suggest<br>
>>>
>>
asking your
instructor who
has hopefully
done that once
already and<br>
>>>
>> knows
how to resolve
the issue you
are facing.<br>
>>>
>><br>
>>>
>> HTH,<br>
>>>
>> Cory<br>
>>>
>><br>
>>>
>> On
Wed, Apr 12,
2017 at 1:57
PM, Andrew Lam
<<a
moz-do-not-send="true"
href="mailto:werdna.mal222@gmail.com" target="_blank">werdna.mal222@gmail.com</a>><br>
>>>
>>
wrote:<br>
>>>
>> >
Cory,<br>
>>>
>> ><br>
>>>
>> >
I'm sorry I
don't know
what you mean
by local
scratch space.<br>
>>>
>> ><br>
>>>
>> >
Thanks,<br>
>>>
>> ><br>
>>>
>> >
Andrew<br>
>>>
>> ><br>
>>>
>> >
On Wed, Apr
12, 2017 at
10:55 AM, Cory
Quammen<br>
>>>
>> >
<<a
moz-do-not-send="true"
href="mailto:cory.quammen@kitware.com" target="_blank">cory.quammen@kitware.com</a>><br>
>>>
>> >
wrote:<br>
>>>
>>
>><br>
>>>
>>
>> >
I'm currently
building on my
school's
servers.<br>
>>>
>>
>><br>
>>>
>>
>> Is
there local
scratch space
on which you
can build
software on<br>
>>>
>>
>> that<br>
>>>
>>
>>
server? My
guess is you
are building
in a home
directory that
is on<br>
>>>
>>
>> an<br>
>>>
>>
>> AFS
or NFS or some
other network
file system,
and that is
causing<br>
>>>
>>
>> you<br>
>>>
>>
>>
problems.<br>
>>>
>>
>><br>
>>>
>>
>>
Thanks,<br>
>>>
>>
>> Cory<br>
>>>
>>
>><br>
>>>
>>
>> >
Thanks,<br>
>>>
>>
>> >
Andrew<br>
>>>
>>
>> ><br>
>>>
>>
>> ><br>
>>>
>>
>> >
On Wed, Apr
12, 2017 at
10:50 AM,
Andrew Lam<br>
>>>
>>
>> >
<<a
moz-do-not-send="true"
href="mailto:werdna.mal222@gmail.com" target="_blank">werdna.mal222@gmail.com</a>><br>
>>>
>>
>> >
wrote:<br>
>>>
>>
>>
>><br>
>>>
>>
>>
>> Cory,<br>
>>>
>>
>>
>><br>
>>>
>>
>>
>> I'm
currently
building on my
school's
servers.<br>
>>>
>>
>>
>><br>
>>>
>>
>>
>>
Thanks,<br>
>>>
>>
>>
>>
Andrew<br>
>>>
>>
>>
>><br>
>>>
>>
>>
>> On
Wed, Apr 12,
2017 at 10:47
AM, Cory
Quammen<br>
>>>
>>
>>
>> <<a
moz-do-not-send="true" href="mailto:cory.quammen@kitware.com"
target="_blank">cory.quammen@kitware.com</a>><br>
>>>
>>
>>
>>
wrote:<br>
>>>
>>
>>
>>><br>
>>>
>>
>>
>>>
Andrew,<br>
>>>
>>
>>
>>><br>
>>>
>>
>>
>>>
Are you
building on a
networked file
system of some
sort? I've<br>
>>>
>>
>>
>>>
run<br>
>>>
>>
>>
>>>
into issues
long ago
building
software
before when
the file<br>
>>>
>>
>>
>>>
system<br>
>>>
>>
>>
>>>
and<br>
>>>
>>
>>
>>>
computer have
different
ideas of what
time it is.<br>
>>>
>>
>>
>>><br>
>>>
>>
>>
>>> -
Cory<br>
>>>
>>
>>
>>><br>
>>>
>>
>>
>>>
On Wed, Apr
12, 2017 at
1:29 PM,
Andrew Lam<br>
>>>
>>
>>
>>>
<<a
moz-do-not-send="true"
href="mailto:werdna.mal222@gmail.com" target="_blank">werdna.mal222@gmail.com</a>><br>
>>>
>>
>>
>>>
wrote:<br>
>>>
>>
>>
>>>
> Hi Andy,<br>
>>>
>>
>>
>>>
><br>
>>>
>>
>>
>>>
> It's
still not
working. I
made a fresh
build
directory and<br>
>>>
>>
>>
>>>
> ran<br>
>>>
>>
>>
>>>
> through<br>
>>>
>>
>>
>>>
> the<br>
>>>
>>
>>
>>>
> motions
again. It
still has the
same issue.
I've attached
my<br>
>>>
>>
>>
>>>
>
CMakeCache.txt<br>
>>>
>>
>>
>>>
> file from
my build
directory.
Please let me
know if you
see<br>
>>>
>>
>>
>>>
> anything<br>
>>>
>>
>>
>>>
> or<br>
>>>
>>
>>
>>>
> if<br>
>>>
>>
>>
>>>
> there is
any other
information
that you might
think would<br>
>>>
>>
>>
>>>
> help.<br>
>>>
>>
>>
>>>
><br>
>>>
>>
>>
>>>
> Thanks,<br>
>>>
>>
>>
>>>
> Andrew<br>
>>>
>>
>>
>>>
><br>
>>>
>>
>>
>>>
> On Wed,
Apr 12, 2017
at 8:43 AM,
Andy Bauer<br>
>>>
>>
>>
>>>
> <<a
moz-do-not-send="true"
href="mailto:andy.bauer@kitware.com" target="_blank">andy.bauer@kitware.com</a>><br>
>>>
>>
>>
>>>
> wrote:<br>
>>>
>>
>>
>>>
>><br>
>>>
>>
>>
>>>
>> Hi
Andrew,<br>
>>>
>>
>>
>>>
>><br>
>>>
>>
>>
>>>
>> This
should compile
for you now.
If it doesn't,
please let<br>
>>>
>>
>>
>>>
>> us<br>
>>>
>>
>>
>>>
>> know<br>
>>>
>>
>>
>>>
>> and<br>
>>>
>>
>>
>>>
>> we<br>
>>>
>>
>>
>>>
>> can
see how to get
it working for
you. If you do
have<br>
>>>
>>
>>
>>>
>>
problems I<br>
>>>
>>
>>
>>>
>>
recommend<br>
>>>
>>
>>
>>>
>>
attaching your
CMakeCache.txt
file from your
build
directory<br>
>>>
>>
>>
>>>
>> so<br>
>>>
>>
>>
>>>
>> it's<br>
>>>
>>
>>
>>>
>>
easier<br>
>>>
>>
>>
>>>
>> for
others to
inspect what
you did.<br>
>>>
>>
>>
>>>
>><br>
>>>
>>
>>
>>>
>> Best,<br>
>>>
>>
>>
>>>
>> Andy<br>
>>>
>>
>>
>>>
>><br>
>>>
>>
>>
>>>
>> On
Wed, Apr 12,
2017 at 11:12
AM, Andrew Lam<br>
>>>
>>
>>
>>>
>> <<a
moz-do-not-send="true" href="mailto:werdna.mal222@gmail.com"
target="_blank">werdna.mal222@gmail.com</a>><br>
>>>
>>
>>
>>>
>>
wrote:<br>
>>>
>>
>>
>>>
>>><br>
>>>
>>
>>
>>>
>>>
Ok Andy I can
see it now
thanks,<br>
>>>
>>
>>
>>>
>>><br>
>>>
>>
>>
>>>
>>>
my variables
are set to<br>
>>>
>>
>>
>>>
>>><br>
>>>
>>
>>
>>>
>>>
Module_vtkParallelMPI4Py *OFF<br>
>>>
>>
>>
>>>
>>>
PYTHON_EXECUTABLE */bin/python2<br>
>>>
>>
>>
>>>
>>>
PYTHON_EXTRA_LIBS *<br>
>>>
>>
>>
>>>
>>>
PYTHON_INCLUDE_DIR */usr/include/python2.7<br>
>>>
>>
>>
>>>
>>>
PYTHON_LIBRARY *//lib64/<a moz-do-not-send="true"
href="http://libpython2.7.so"
rel="noreferrer" target="_blank">libpython2.7.so</a><br>
>>>
>>
>>
>>>
>>>
PYTHON_UTIL_LIBRARY */usr/lib64/libutil.so<br>
>>>
>>
>>
>>>
>>>
VTK_ENABLE_VTKPYTHON *ON<br>
>>>
>>
>>
>>>
>>><br>
>>>
>>
>>
>>>
>>>
after I set
VTK_WRAP_PYTHON
CMake variable
to ON<br>
>>>
>>
>>
>>>
>>><br>
>>>
>>
>>
>>>
>>>
it seems ok to
me, but let me
know if
they're wrong.<br>
>>>
>>
>>
>>>
>>><br>
>>>
>>
>>
>>>
>>>
Thanks,<br>
>>>
>>
>>
>>>
>>>
Andrew<br>
>>>
>>
>>
>>>
>>><br>
>>>
>>
>>
>>>
>>>
On Tue, Apr
11, 2017 at
3:30 PM,
Andrew Lam<br>
>>>
>>
>>
>>>
>>>
<<a
moz-do-not-send="true"
href="mailto:werdna.mal222@gmail.com" target="_blank">werdna.mal222@gmail.com</a>><br>
>>>
>>
>>
>>>
>>>
wrote:<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
Hi, my name is
Andrew. I'm
currently in a
class that<br>
>>>
>>
>>
>>>
>>>>
requires<br>
>>>
>>
>>
>>>
>>>>
us<br>
>>>
>>
>>
>>>
>>>>
to<br>
>>>
>>
>>
>>>
>>>>
install VTK.<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
I have an
issue running
make in my
VTK-build
directory. I<br>
>>>
>>
>>
>>>
>>>>
get<br>
>>>
>>
>>
>>>
>>>>
a<br>
>>>
>>
>>
>>>
>>>>
bunch of<br>
>>>
>>
>>
>>>
>>>>
clock skew
issues that
pop up that
won't go away
after<br>
>>>
>>
>>
>>>
>>>>
calling<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
$ touch *<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
then it will
print out<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
make[2]: ***<br>
>>>
>>
>>
>>>
>>>>
[Wrapping/Python/vtkAngularPer<wbr>iodicDataArrayPython.cxx]<br>
>>>
>>
>>
>>>
>>>>
Error 1<br>
>>>
>>
>>
>>>
>>>>
make[1]: ***<br>
>>>
>>
>>
>>>
>>>>
[Wrapping/Python/CMakeFiles/vt<wbr>kCommonCorePythonD.dir/all]<br>
>>>
>>
>>
>>>
>>>>
Error 2<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
it will then
run to about
32% and then
end printing<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
make: ***
[all] Error 2<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
I'm using
python 2.7,
VTK 7.1.1,
cmake 3.7.2<br>
>>>
>>
>>
>>>
>>>>
I'm also going
to include the
output of the
make call.<br>
>>>
>>
>>
>>>
>>>>
Please<br>
>>>
>>
>>
>>>
>>>>
let<br>
>>>
>>
>>
>>>
>>>>
me<br>
>>>
>>
>>
>>>
>>>>
know if you
have any
suggestions or
if you need
any more<br>
>>>
>>
>>
>>>
>>>>
information<br>
>>>
>>
>>
>>>
>>>>
to<br>
>>>
>>
>>
>>>
>>>>
understand the
issue.<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
[ 0%] Built
target
kwiml_test<br>
>>>
>>
>>
>>>
>>>>
[ 0%] Built
target vtksys<br>
>>>
>>
>>
>>>
>>>>
[ 1%] Built
target
vtkWrappingTools<br>
>>>
>>
>>
>>>
>>>>
[ 1%] Built
target
vtkalglib<br>
>>>
>>
>>
>>>
>>>>
[ 1%] Built
target
vtkexpat<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target vtkzlib<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
vtkDICOMParser<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
vtkEncodeString<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target vtkjpeg<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
vtkHashSource<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target vtkglew<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
H5make_libsettings<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
H5detect<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
vtkWrapTcl<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
vtkParseJava<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
vtkWrapPython<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
vtkWrapPythonInit<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
vtkWrapTclInit<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
vtkWrapJava<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
vtkjsoncpp<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target verdict<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
vtksqlite<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
vtkoggtheora<br>
>>>
>>
>>
>>>
>>>>
[ 2%] Built
target
vtkWrapHierarchy<br>
>>>
>>
>>
>>>
>>>>
[ 4%] Built
target
vtkproj4<br>
>>>
>>
>>
>>>
>>>>
[ 4%] Built
target
vtkfreetype<br>
>>>
>>
>>
>>>
>>>>
[ 5%] Built
target
vtklibxml2<br>
>>>
>>
>>
>>>
>>>>
[ 5%] Built
target vtkpng<br>
>>>
>>
>>
>>>
>>>>
[ 5%] Built
target
vtkmetaio<br>
>>>
>>
>>
>>>
>>>>
[ 5%] Built
target
vtkgl2ps<br>
>>>
>>
>>
>>>
>>>>
[ 5%] Built
target vtktiff<br>
>>>
>>
>>
>>>
>>>>
[ 20%] Built
target
vtkCommonCore<br>
>>>
>>
>>
>>>
>>>>
[ 26%] Built
target VTKData<br>
>>>
>>
>>
>>>
>>>>
[ 28%] Built
target
vtkCommonSystem<br>
>>>
>>
>>
>>>
>>>>
[ 29%] Built
target
vtkCommonMath<br>
>>>
>>
>>
>>>
>>>>
[ 29%] Built
target vtkhdf5<br>
>>>
>>
>>
>>>
>>>>
[ 29%] Built
target
vtkWrappingPythonCore<br>
>>>
>>
>>
>>>
>>>>
[ 29%] Built
target
vtkLocalExample<br>
>>>
>>
>>
>>>
>>>>
[ 29%] Built
target
vtkCommonMisc<br>
>>>
>>
>>
>>>
>>>>
[ 29%] Built
target
vtkCommonTransforms<br>
>>>
>>
>>
>>>
>>>>
[ 29%] Built
target
vtkCommonSystemCxxTests<br>
>>>
>>
>>
>>>
>>>>
[ 29%] Python
Wrapping -
generating<br>
>>>
>>
>>
>>>
>>>>
vtkAbstractArrayPython.cxx<br>
>>>
>>
>>
>>>
>>>>
[ 29%] Built
target
vtkhdf5_hl<br>
>>>
>>
>>
>>>
>>>>
Usage:
vtkWrapPython-7.1
[options]
infile...<br>
>>>
>>
>>
>>>
>>>>
--help
print this
help message<br>
>>>
>>
>>
>>>
>>>>
--version
print the
VTK version<br>
>>>
>>
>>
>>>
>>>>
-o
<file>
the
output file<br>
>>>
>>
>>
>>>
>>>>
-I
<dir>
add an
include
directory<br>
>>>
>>
>>
>>>
>>>>
-D
<macro[=def]>
define a
preprocessor
macro<br>
>>>
>>
>>
>>>
>>>>
-U
<macro>
undefine
a preprocessor
macro<br>
>>>
>>
>>
>>>
>>>>
@<file> read arguments from a file<br>
>>>
>>
>>
>>>
>>>>
--hints
<file>
the hints
file to use<br>
>>>
>>
>>
>>>
>>>>
--types
<file>
the type
hierarchy file
to use<br>
>>>
>>
>>
>>>
>>>>
--concrete
force
concrete class
(ignored,<br>
>>>
>>
>>
>>>
>>>>
deprecated)<br>
>>>
>>
>>
>>>
>>>>
--abstract
force
abstract class
(ignored,<br>
>>>
>>
>>
>>>
>>>>
deprecated)<br>
>>>
>>
>>
>>>
>>>>
--vtkobject
vtkObjectBase-derived
class
(ignored,<br>
>>>
>>
>>
>>>
>>>>
deprecated)<br>
>>>
>>
>>
>>>
>>>>
--special
non-vtkObjectBase
class
(ignored,<br>
>>>
>>
>>
>>>
>>>>
deprecated)<br>
>>>
>>
>>
>>>
>>>>
make[2]: ***
[Wrapping/Python/vtkAbstractAr<wbr>rayPython.cxx]<br>
>>>
>>
>>
>>>
>>>>
Error 1<br>
>>>
>>
>>
>>>
>>>>
make[2]: ***
Waiting for
unfinished
jobs....<br>
>>>
>>
>>
>>>
>>>>
[ 29%] Built
target
vtkpython<br>
>>>
>>
>>
>>>
>>>>
[ 29%] Python
Wrapping -
generating<br>
>>>
>>
>>
>>>
>>>>
vtkAngularPeriodicDataArrayPyt<wbr>hon.cxx<br>
>>>
>>
>>
>>>
>>>>
Usage:
vtkWrapPython-7.1
[options]
infile...<br>
>>>
>>
>>
>>>
>>>>
--help
print this
help message<br>
>>>
>>
>>
>>>
>>>>
--version
print the
VTK version<br>
>>>
>>
>>
>>>
>>>>
-o
<file>
the
output file<br>
>>>
>>
>>
>>>
>>>>
-I
<dir>
add an
include
directory<br>
>>>
>>
>>
>>>
>>>>
-D
<macro[=def]>
define a
preprocessor
macro<br>
>>>
>>
>>
>>>
>>>>
-U
<macro>
undefine
a preprocessor
macro<br>
>>>
>>
>>
>>>
>>>>
@<file> read arguments from a file<br>
>>>
>>
>>
>>>
>>>>
--hints
<file>
the hints
file to use<br>
>>>
>>
>>
>>>
>>>>
--types
<file>
the type
hierarchy file
to use<br>
>>>
>>
>>
>>>
>>>>
--concrete
force
concrete class
(ignored,<br>
>>>
>>
>>
>>>
>>>>
deprecated)<br>
>>>
>>
>>
>>>
>>>>
--abstract
force
abstract class
(ignored,<br>
>>>
>>
>>
>>>
>>>>
deprecated)<br>
>>>
>>
>>
>>>
>>>>
--vtkobject
vtkObjectBase-derived
class
(ignored,<br>
>>>
>>
>>
>>>
>>>>
deprecated)<br>
>>>
>>
>>
>>>
>>>>
--special
non-vtkObjectBase
class
(ignored,<br>
>>>
>>
>>
>>>
>>>>
deprecated)<br>
>>>
>>
>>
>>>
>>>>
make[2]: ***<br>
>>>
>>
>>
>>>
>>>>
[Wrapping/Python/vtkAngularPer<wbr>iodicDataArrayPython.cxx]<br>
>>>
>>
>>
>>>
>>>>
Error 1<br>
>>>
>>
>>
>>>
>>>>
make[1]: ***<br>
>>>
>>
>>
>>>
>>>>
[Wrapping/Python/CMakeFiles/vt<wbr>kCommonCorePythonD.dir/all]<br>
>>>
>>
>>
>>>
>>>>
Error 2<br>
>>>
>>
>>
>>>
>>>>
make[1]: ***
Waiting for
unfinished
jobs....<br>
>>>
>>
>>
>>>
>>>>
Scanning
dependencies
of target
vtkCommonMathCxxTests<br>
>>>
>>
>>
>>>
>>>>
make[2]:
Warning: File<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
`Common/Math/Testing/Cxx/CMake<wbr>Files/vtkCommonMathCxxTests.di<wbr>r/depend.make'<br>
>>>
>>
>>
>>>
>>>>
has
modification
time 0.041 s
in the future<br>
>>>
>>
>>
>>>
>>>>
[ 29%]
Building CXX
object<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
Common/Math/Testing/Cxx/CMakeF<wbr>iles/vtkCommonMathCxxTests.dir<wbr>/vtkCommonMathCxxTests.cxx.o<br>
>>>
>>
>>
>>>
>>>>
[ 29%]
Building CXX
object<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
Common/Math/Testing/Cxx/CMakeF<wbr>iles/vtkCommonMathCxxTests.dir<wbr>/TestAmoebaMinimizer.cxx.o<br>
>>>
>>
>>
>>>
>>>>
[ 30%] Built
target
vtkCommonCoreCxxTests<br>
>>>
>>
>>
>>>
>>>>
[ 30%]
Building CXX
object<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
Common/Math/Testing/Cxx/CMakeF<wbr>iles/vtkCommonMathCxxTests.dir<wbr>/TestMatrix3x3.cxx.o<br>
>>>
>>
>>
>>>
>>>>
[ 30%]
Building CXX
object<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
Common/Math/Testing/Cxx/CMakeF<wbr>iles/vtkCommonMathCxxTests.dir<wbr>/TestPolynomialSolversUnivaria<wbr>te.cxx.o<br>
>>>
>>
>>
>>>
>>>>
[ 30%]
Building CXX
object<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>>>
Common/Math/Testing/Cxx/CMakeF<wbr>iles/vtkCommonMathCxxTests.dir<wbr>/TestQuaternion.cxx.o<br>
>>>
>>
>>
>>>
>>>>
[ 30%] Linking
CXX executable<br>
>>>
>>
>>
>>>
>>>>
../../../../bin/vtkCommonMathC<wbr>xxTests<br>
>>>
>>
>>
>>>
>>>>
[ 32%] Built
target
vtkCommonDataModel<br>
>>>
>>
>>
>>>
>>>>
make[2]:
warning:
Clock skew
detected.
Your build may
be<br>
>>>
>>
>>
>>>
>>>>
incomplete.<br>
>>>
>>
>>
>>>
>>>>
[ 32%] Built
target
vtkCommonMathCxxTests<br>
>>>
>>
>>
>>>
>>>>
make: ***
[all] Error 2<br>
>>>
>>
>>
>>>
>>>><br>
>>>
>>
>>
>>>
>>><br>
>>>
>>
>>
>>>
>>><br>
>>>
>>
>>
>>>
>>>
______________________________<wbr>_________________<br>
>>>
>>
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>>>
--<br>
>>>
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>>>
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>>>
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>><br>
>><br>
><br>
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--<br>
Cory Quammen<br>
Staff R&D
Engineer<br>
Kitware, Inc.<br>
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<pre wrap="">_______________________________________________
Powered by <a class="moz-txt-link-abbreviated" href="http://www.kitware.com">www.kitware.com</a>
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