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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D">That did it, thank you!<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> Cory Quammen [mailto:cory.quammen@kitware.com]
<br>
<b>Sent:</b> Friday, October 30, 2015 12:10 PM<br>
<b>To:</b> Andrew J. Buckler (Elucid Bioimaging)<br>
<b>Cc:</b> vtkusers@vtk.org<br>
<b>Subject:</b> Re: [vtkusers] SystemTools.cxx:326:51: error: ‘realpath’ was not declared in this scope<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hi Andy,<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">I don't know if cygwin is officially supported anymore. VTK isn't being tested against cygwin on a regular basis.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Perhaps this page will help:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><a href="http://hvrl.ics.keio.ac.jp/kimura/vtk/vtk-6.3.0.html" target="_blank">http://hvrl.ics.keio.ac.jp/kimura/vtk/vtk-6.3.0.html</a>.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Cory<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Fri, Oct 30, 2015 at 10:12 AM, Andrew J. Buckler (Elucid Bioimaging) <<a href="mailto:andrew.buckler@elucidbio.com" target="_blank">andrew.buckler@elucidbio.com</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">Hello,</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">I am building VTK on Windows with Cygwin. I am trying to make the use of cmake and the build process as similar
to Mac as possible; I already have it working there. The cmake configuration works fine, but the build fails:</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">$ make</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console";color:#FF40FF">Scanning dependencies of target VTKData</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">[ 0%] Built target VTKData</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console";color:#FF40FF">Scanning dependencies of target vtksys</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">[ 0%] <span style="color:#00BF00">
Building C object Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/ProcessUNIX.c.o</span></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">[ 0%] <span style="color:#00BF00">
Building C object Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/Base64.c.o</span></span><o:p></o:p></p>
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<span style="font-size:9.0pt;font-family:"Lucida Console"">[ 0%] <span style="color:#00BF00">
Building C object Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/EncodingC.c.o</span></span><o:p></o:p></p>
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<span style="font-size:9.0pt;font-family:"Lucida Console"">[ 0%] <span style="color:#00BF00">
Building C object Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/MD5.c.o</span></span><o:p></o:p></p>
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<span style="font-size:9.0pt;font-family:"Lucida Console"">[ 0%] <span style="color:#00BF00">
Building C object Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/System.c.o</span></span><o:p></o:p></p>
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<span style="font-size:9.0pt;font-family:"Lucida Console"">[ 0%] <span style="color:#00BF00">
Building CXX object Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/Directory.cxx.o</span></span><o:p></o:p></p>
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<span style="font-size:9.0pt;font-family:"Lucida Console"">[ 0%] <span style="color:#00BF00">
Building CXX object Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/DynamicLoader.cxx.o</span></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">[ 0%] <span style="color:#00BF00">
Building CXX object Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/EncodingCXX.cxx.o</span></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">[ 0%] <span style="color:#00BF00">
Building CXX object Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/Glob.cxx.o</span></span><o:p></o:p></p>
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<span style="font-size:9.0pt;font-family:"Lucida Console"">[ 0%] <span style="color:#00BF00">
Building CXX object Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/RegularExpression.cxx.o</span></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">[ 0%] <span style="color:#00BF00">
Building CXX object Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/SystemTools.cxx.o</span></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">/cygdrive/c/Users/Andrew Buckler/My Documents/projects/VTK-6.3.0/Utilities/KWSys/vtksys/SystemTools.cxx: In function ‘void Realpath(const string&, std::string&, std::string*)’:</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">/cygdrive/c/Users/Andrew Buckler/My Documents/projects/VTK-6.3.0/Utilities/KWSys/vtksys/SystemTools.cxx:326:51: error: ‘realpath’ was not declared in this scope</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console""> char *ret = realpath(path.c_str(), resolved_name);</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console""> ^</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">/cygdrive/c/Users/Andrew Buckler/My Documents/projects/VTK-6.3.0/Utilities/KWSys/vtksys/SystemTools.cxx: In function ‘int vtksys::kwsysUnPutEnv(const string&)’:</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">/cygdrive/c/Users/Andrew Buckler/My Documents/projects/VTK-6.3.0/Utilities/KWSys/vtksys/SystemTools.cxx:518:16: error: ‘putenv’ was not declared in this scope</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console""> if(putenv(buf) < 0 && errno != EINVAL)</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console""> ^</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">/cygdrive/c/Users/Andrew Buckler/My Documents/projects/VTK-6.3.0/Utilities/KWSys/vtksys/SystemTools.cxx: In member function ‘bool vtksys::kwsysEnv::Put(const char*)’:</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">/cygdrive/c/Users/Andrew Buckler/My Documents/projects/VTK-6.3.0/Utilities/KWSys/vtksys/SystemTools.cxx:658:25: error: ‘putenv’ was not declared in this scope</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console""> return putenv(newEnv) == 0;</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console""> ^</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/build.make:302: recipe for target 'Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/SystemTools.cxx.o' failed</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">make[2]: *** [Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/SystemTools.cxx.o] Error 1</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">CMakeFiles/Makefile2:193: recipe for target 'Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/all' failed</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">make[1]: *** [Utilities/KWSys/vtksys/CMakeFiles/vtksys.dir/all] Error 2</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">Makefile:127: recipe for target 'all' failed</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:.5in;text-autospace:none">
<span style="font-size:9.0pt;font-family:"Lucida Console"">make: *** [all] Error 2</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif""> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">Any help?</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif""> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">Best regards,</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><i><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">Andy</span></i></b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">-------------------------------------</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#336699">Andrew J. Buckler</span></b><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">, President
and CEO</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#336699">Elucid Bioimaging Inc.</span></b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">225 Main Street, Suite 15 | Wenham, MA 01984 USA</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">Office:
<a href="tel:%2B1-978-468-0508" target="_blank">+1-978-468-0508</a></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">Mobile:
<a href="tel:%2B1-978-473-1986" target="_blank">+1-978-473-1986</a></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">Fax:
<a href="tel:%2B1-978-468-0527" target="_blank">+1-978-468-0527</a></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><a href="mailto:andrew.buckler@elucidbio.com" target="_blank"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">andrew.buckler@elucidbio.com</span></a><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">
| </span><a href="http://www.elucidbio.com/" target="_blank"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"">www.elucidbio.com</span></a><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#0233BE"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:7.5pt;font-family:"Arial","sans-serif"">This e-mail is from Elucid Bioimaging Inc., a product development and contract research company, and may contain information
that is confidential or privileged. If you are not the intended recipient, do not read, copy or distribute the e-mail or any attachments. Instead, please notify the sender and delete the e-mail and any attachments. Thank you.</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">-- <o:p></o:p></p>
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<p class="MsoNormal">Cory Quammen<br>
R&D Engineer<br>
Kitware, Inc.<o:p></o:p></p>
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