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<div>Hi Burak, </div>
<div><font face="tahoma"></font> </div>
<div><font face="tahoma">Are the 2d MRI slices a series of dicom files? If so you could read them into VTK using vtkDICOMImageReader, see
<a href="http://www.vtk.org/Wiki/VTK/Examples/Cxx/IO/ReadDICOM">http://www.vtk.org/Wiki/VTK/Examples/Cxx/IO/ReadDICOM</a>, then you could extract the necessary isosurface using vtkContourFilter, e.g.
<a href="https://github.com/Kitware/VTK/blob/master/Examples/Medical/Cxx/Medical2.cxx">
https://github.com/Kitware/VTK/blob/master/Examples/Medical/Cxx/Medical2.cxx</a></font></div>
<div><font face="tahoma"></font> </div>
<div><font face="tahoma">The vtk examples have a series of medical examples that could be useful for what you are trying to achieve</font></div>
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Jamie Wright | Clinical Scientist | Nuclear Medicine | NHSGGC (Southern General and Glasgow Royal Infirmary)<br>
jamie.wright@nhs.net</div>
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<font color="#000000" size="2" face="Tahoma"><b>From:</b> vtkusers [vtkusers-bounces@vtk.org] On Behalf Of BURAK UZKENT (RIT Student) [bxu2522@rit.edu]<br>
<b>Sent:</b> 27 June 2014 23:32<br>
<b>To:</b> vtkusers@vtk.org<br>
<b>Subject:</b> [vtkusers] 3-D plot using a series of 2-D MRIs<br>
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<div>Hello everyone,</div>
<div><br>
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<div>I have a series of short-axis MRI images of human heart. I want to stack all the 2-D images in a 3-D matrix and display it in C++ in 3-D. Basically, what I am looking for is a function like isosurface and patch in Matlab. I will deeply appreciate any
help. </div>
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<div dir="ltr"><i style="FONT-FAMILY: arial"><font size="+0">Kind Regards</font></i>
<div style="FONT-FAMILY: arial"><i><font size="+0">-----------------------------------------------------</font></i></div>
<div style="FONT-FAMILY: arial"><i><font size="+0">Burak Uzkent</font></i></div>
<div style="FONT-FAMILY: arial"><i><font size="+0">PhD Student</font></i></div>
<div style="FONT-FAMILY: arial"><i><font size="+0">Graduate Research Assistant</font></i></div>
<div style="FONT-FAMILY: arial"><font size="+0"><i>Imaging Science </i><i><br>
</i></font></div>
<div style="FONT-FAMILY: arial"><i><font size="+0">Rochester Institute of Technology</font></i></div>
<div style="FONT-FAMILY: arial"><i><font size="+0">Web: <a style="COLOR: rgb(17,85,204)" href="http://people.rit.edu/bxu2522/" target="_blank">http://people.rit.edu/bxu2522/</a> </font></i></div>
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