[vtkusers] java memory
Sebastien Jourdain
sebastien.jourdain at kitware.com
Wed Mar 30 08:47:49 EDT 2011
Hi Jonathan,
I will try to look closer into this weekend, for your other question
about Java+VTK project,
you should start a new thread with that in subject.
Although, I did wrote some but they are not all available online.
Seb
On Tue, Mar 29, 2011 at 7:38 PM, Jonathan Morra <jonmorra at gmail.com> wrote:
> I will try and write something small to highlight the problems. However,
> two places where I currently must execute vtk code outside the EDT is the
> following.
> 1. My program reads data from disk in the form of a vtkPolyData, and I want
> to store the data as binary vtkImageData's. This conversion from
> vtkPolyData to vtkImageData is time consuming, and will freeze the UI if I
> do it on the EDT. Here is an example snippet.
> ExecutorService loadingThreadPool =
> Executors.newFixedThreadPool(Runtime.getRuntime().availableProcessors());
> for (int i = 0; i < numOrgans; i++) {
> vtkPolyData data = thePolyReader.GetOutput(i);
> vtkPolyData dataCopy = new vtkPolyData();
> dataCopy.DeepCopy(data);
> String organName = // get organ name
> if (organName == null || organName.isEmpty()) {
> dataCopy.Delete();
> continue;
> }
> loadingThreadPool.submit(new LoadOneROI(dataCopy, organName));
> }
> private class LoadOneROI extends Thread {
> private String organName;
> private vtkPolyData data;;
> public LoadOneROI(vtkPolyData data, String organName) {
> this.data = data;
> this.organName = organName;
> }
> public void run() {
> vtkImageData theImage = createBinaryImage(data);
> ENV.getInstance().getDataManager().setOrgan(organName,
> theImage);
> data.Delete();
> }
> }
> public vtkImageData createBinaryImage(vtkPolyData data) {
> vtkLinearExtrusionFilter extruder = new vtkLinearExtrusionFilter();
> extruder.SetInput(data);
> extruder.Update();
> vtkPolyData extruderOutput = extruder.GetOutput();
> extruder.Delete();
> vtkImageData binaryOrgan = // Get blank binary image of correct size
> vtkPolyDataToImageStencil pol2Stenc = new
> vtkPolyDataToImageStencil();
> pol2Stenc.SetTolerance(0);
> pol2Stenc.SetInput(extruderOutput);
> pol2Stenc.SetInformationInput(binaryOrgan);
> pol2Stenc.Update();
> vtkImageStencilData pol2StencOutput = pol2Stenc.GetOutput();
> extruderOutput.Delete();
> pol2Stenc.Delete();
> vtkImageStencil stencil = new vtkImageStencil();
> stencil.SetInput(binaryOrgan);
> stencil.ReverseStencilOn();
> stencil.SetStencil(pol2StencOutput);
> stencil.Update();
> pol2StencOutput.Delete();
> final vtkImageData stencilOutput = stencil.GetOutput();
> stencil.Delete();
> return stencilOutput;
> }
> 2. I need to be able to create a vtkPolyData from a binary vtkImageData,
> and this also can take too long (depending on the complexity and size of the
> vtkPolyData) and will cause the UI to hang if it's done on the EDT.
> private class OrganViewer extends SwingWorker<vtkPolyData, Void> {
> private String organ;
> public OrganViewer(String organ) {
> this.organ = organ;
> }
> public String getOrgan() {
> return organ;
> }
> public vtkPolyData doInBackground() {
> currentlyBuildingModes.add(organ);
> vtkPolyData organMesh = getOrganMesh(organ);
> return organMesh;
> }
> public void done() {
> vtkPolyData organMesh = null;
> try {
> organMesh = get();
> }
> catch (Exception e) {
> // If this gets here that means that the
> // swing worker was cancelled, so in that case
> // just return
> return;
> }
> vtkPolyDataMapper mapper = new vtkPolyDataMapper();
> mapper.SetInput(organMesh);
> vtkActor actor = new vtkActor();
> actor.SetMapper(mapper);
> actor.GetProperty().SetRepresentationToSurface();
> renWin.GetRenderer().AddActor(actor);
> currentActors.put(organ, actor);
> currentlyBuildingModes.remove(organ);
> Render();
> }
> }
> public synchronized vtkPolyData getOrganMesh(String organ) {
> vtkMarchingCubes marching = new vtkMarchingCubes();
> vtkImageData image = binaryOrgans.get(organ);
> marching.SetInput(image);
> marching.ComputeGradientsOff();
> marching.ComputeNormalsOff();
> marching.ComputeScalarsOff();
> marching.SetValue(0, 0.5);
> marching.Update();
> vtkPolyData marchingOutput = marching.GetOutput();
> if (marchingOutput.GetNumberOfPoints() == 0)
> return marchingOutput;
>
> // The decimation makes the render time much faster
> vtkDecimatePro decimate = new vtkDecimatePro();
> decimate.SetInput(marchingOutput);
> decimate.SetTargetReduction(0.6);
> decimate.Update();
> vtkPolyData decimateOutput = decimate.GetOutput();
> vtkSmoothPolyDataFilter smooth = new vtkSmoothPolyDataFilter();
> smooth.SetInput(decimateOutput);
> smooth.SetNumberOfIterations(200);
> smooth.BoundarySmoothingOn();
> smooth.FeatureEdgeSmoothingOn();
> smooth.SetRelaxationFactor(0.1);
> smooth.Update();
> vtkPolyData smoothOutput = smooth.GetOutput();
> return smoothOutput;
> }
> There are more instances like this, but these are two main ones. But again,
> is there any project that uses Java + VTK? I would be really curious to see
> one.
> On Tue, Mar 29, 2011 at 4:26 PM, Sebastien Jourdain
> <sebastien.jourdain at kitware.com> wrote:
>>
>> Multi-threading is not an easy thing to deal with and this is not
>> related specifically to VTK and Java.
>> An easy fix, is to execute all VTK code (creation, update, delete)
>> inside the EDT. But this brings the question: Why do you create VTK
>> object outside the EDT. If you share that peace of code, I might be
>> able to fix it. Although you need to be sure that's the only place
>> where you do a "new vtkXXX() / b.SetXXX()" outside the EDT.
>>
>> A better approach to everyone could be to create a very basic code
>> sample that highlight the problem with memory and GC that I could fix
>> and provide as a demonstration application for the community.
>>
>> Seb
>>
>>
>> On Tue, Mar 29, 2011 at 7:09 PM, Jonathan Morra <jonmorra at gmail.com>
>> wrote:
>> > Honestly, I'm having a lot of trouble with this. Are there any
>> > sizable projects out there that use Java + VTK successfully that I might
>> > be
>> > able to have a look at?
>> >
>> > On Tue, Mar 29, 2011 at 2:26 PM, Sebastien Jourdain
>> > <sebastien.jourdain at kitware.com> wrote:
>> >>
>> >> If you have few place where you handle VTK object outside the EDT,
>> >> then you should use a lock (cf. java.util.concurrency) to make sure
>> >> that either the GC or a working thread is running but nether both. As
>> >> the GC is going to run in the EDT, you don't care with the code that
>> >> is already handle inside the EDT, just the code that create vtkObjects
>> >> inside another thread.
>> >>
>> >> Although, depending on your code design, a call to .Delete() might be
>> >> fine if you know that you won't induce any concurrency between an EDT
>> >> that will try to render images (call update on each filter of the
>> >> pipeline) and another thread that is removing an object that is
>> >> referenced inside that pipeline.
>> >>
>> >> Seb
>> >>
>> >> On Tue, Mar 29, 2011 at 4:16 PM, Jonathan Morra <jonmorra at gmail.com>
>> >> wrote:
>> >> > With all this in mind (that I'm using a multithreaded environment).
>> >> > Do
>> >> > you
>> >> > think it makes more sense to use vtk's garbage collector or just call
>> >> > .Delete() on every vtk data object I create?
>> >> >
>> >> > On Tue, Mar 29, 2011 at 12:05 PM, Sebastien Jourdain
>> >> > <sebastien.jourdain at kitware.com> wrote:
>> >> >>
>> >> >> Hi Jonathan,
>> >> >>
>> >> >> > I definitely use one thread to create vtkObjects and then other
>> >> >> > threads
>> >> >> > access them in a
>> >> >> > thread safe manner. I thought this was OK.
>> >> >>
>> >> >> This is OK, but if your objects are part of the pipeline which is
>> >> >> rendered, then all the VTK objects (of that pipeline) should be
>> >> >> accessed through the EDT.
>> >> >>
>> >> >> That's precisely why the delete and most of the calls should be done
>> >> >> in
>> >> >> the EDT.
>> >> >> But if you have a processing loop (Not the EDT) that create a set of
>> >> >> VTK object and you call the GC in the EDT, you have a concurrency
>> >> >> issue here... That's the only thing that I'm saying.
>> >> >>
>> >> >> Seb
>> >> >>
>> >> >> On Tue, Mar 29, 2011 at 2:55 PM, Jonathan Morra <jonmorra at gmail.com>
>> >> >> wrote:
>> >> >> > Sorry, I forgot to mention that in all my current test cases I'm
>> >> >> > calling
>> >> >> > the
>> >> >> > method cleanSystem(false), so I'm never
>> >> >> > calling vtkGlobalJavaHash.DeleteAll();. In fact you can see in
>> >> >> > the
>> >> >> > stack
>> >> >> > trace the following line
>> >> >> > vtk.vtkGlobalJavaHash.GC()I+73
>> >> >> > so I'm definitely not calling DeleteAll(). For threads, I was
>> >> >> > under
>> >> >> > the
>> >> >> > impression that vtkGlobalJavaHash.GC() should always be called
>> >> >> > from
>> >> >> > the
>> >> >> > EDT
>> >> >> > if I have any objects that are used for rendering (which I have a
>> >> >> > bunch
>> >> >> > of).
>> >> >> > I spent a lot of time making this program work in a multithreaded
>> >> >> > environment. I separated all calls to any rendering objects and
>> >> >> > do
>> >> >> > them
>> >> >> > in
>> >> >> > the EDT. VTK calls to non-rendering objects I do in other threads
>> >> >> > sometimes. Are you saying that if a VTK object is created in a
>> >> >> > given
>> >> >> > thread, it must also be disposed of in that same thread? I
>> >> >> > definitely
>> >> >> > use
>> >> >> > one thread to create vtkObjects and then other threads access them
>> >> >> > in
>> >> >> > a
>> >> >> > thread safe manner. I thought this was OK.
>> >> >> >
>> >> >> > On Tue, Mar 29, 2011 at 11:41 AM, Sebastien Jourdain
>> >> >> > <sebastien.jourdain at kitware.com> wrote:
>> >> >> >>
>> >> >> >> Do you call that method ? This will remove all the VTK object
>> >> >> >> that
>> >> >> >> have been created through Java regardless if you are still using
>> >> >> >> them
>> >> >> >> or not.
>> >> >> >>
>> >> >> >> > vtkGlobalJavaHash.DeleteAll();
>> >> >> >>
>> >> >> >> Have you got an idea in which thread you are using the VTK
>> >> >> >> objects ?
>> >> >> >> If not, you do have a problem. VTK is not thread safe therefore
>> >> >> >> you
>> >> >> >> should make sure (like swing) that any VTK code get executed in
>> >> >> >> the
>> >> >> >> EDT. (creation, setting, update...)
>> >> >> >>
>> >> >> >> Seb
>> >> >> >>
>> >> >> >> PS: On the other hand, if you know what you are doing, you can
>> >> >> >> use
>> >> >> >> VTK
>> >> >> >> in a multi-threaded environment with sometime some
>> >> >> >> synchronization
>> >> >> >> with the EDT.
>> >> >> >>
>> >> >> >> On Tue, Mar 29, 2011 at 2:26 PM, Jonathan Morra
>> >> >> >> <jonmorra at gmail.com>
>> >> >> >> wrote:
>> >> >> >> > OK, I'm still getting a lot of JNI errors when I run the
>> >> >> >> > vtkGarbageCollector
>> >> >> >> > that look like the following. Do you have any idea what's
>> >> >> >> > going
>> >> >> >> > on
>> >> >> >> > here?
>> >> >> >> > Here is the code that it is being called from
>> >> >> >> > private static class MyVTKClean implements Runnable {
>> >> >> >> > private boolean runVTKDelete;
>> >> >> >> > private int numDelete;
>> >> >> >> > public MyVTKClean(boolean runVTKDelete) {
>> >> >> >> > this.runVTKDelete = runVTKDelete;
>> >> >> >> > }
>> >> >> >> > public synchronized void run() {
>> >> >> >> > if (runVTKDelete)
>> >> >> >> > numDelete = vtkGlobalJavaHash.DeleteAll();
>> >> >> >> > else
>> >> >> >> > numDelete = vtkGlobalJavaHash.GC();
>> >> >> >> > }
>> >> >> >> > public int getNumDelete() {
>> >> >> >> > return numDelete;
>> >> >> >> > }
>> >> >> >> > }
>> >> >> >> >
>> >> >> >> > // I think the VTK clean up has to run
>> >> >> >> > // on the EDT, so we'll do that here
>> >> >> >> > public synchronized static void cleanSystem(boolean
>> >> >> >> > runVTKDelete)
>> >> >> >> > {
>> >> >> >> > System.gc();
>> >> >> >> > System.runFinalization();
>> >> >> >> > MyVTKClean run = new MyVTKClean(runVTKDelete);
>> >> >> >> > // I'm not sure what to do here, it crashes sometimes
>> >> >> >> > // I honestly think we're going to have to go through
>> >> >> >> > the
>> >> >> >> > program
>> >> >> >> > // and just manually manage all our own memory.
>> >> >> >> > SwingUtilities.invokeLater(run);
>> >> >> >> > }
>> >> >> >> > Here is a reproduction of the JNI VTK error.
>> >> >> >> > #
>> >> >> >> > # A fatal error has been detected by the Java Runtime
>> >> >> >> > Environment:
>> >> >> >> > #
>> >> >> >> > # EXCEPTION_ACCESS_VIOLATION (0xc0000005) at
>> >> >> >> > pc=0x000020001ba29400,
>> >> >> >> > pid=5420, tid=5264
>> >> >> >> > #
>> >> >> >> > # JRE version: 6.0_24-b07
>> >> >> >> > # Java VM: Java HotSpot(TM) 64-Bit Server VM (19.1-b02 mixed
>> >> >> >> > mode
>> >> >> >> > windows-amd64 compressed oops)
>> >> >> >> > # Problematic frame:
>> >> >> >> > # C 0x000020001ba29400
>> >> >> >> > #
>> >> >> >> > # If you would like to submit a bug report, please visit:
>> >> >> >> > # http://java.sun.com/webapps/bugreport/crash.jsp
>> >> >> >> > # The crash happened outside the Java Virtual Machine in native
>> >> >> >> > code.
>> >> >> >> > # See problematic frame for where to report the bug.
>> >> >> >> > #
>> >> >> >> > --------------- T H R E A D ---------------
>> >> >> >> > Current thread (0x0000000007e4c000): JavaThread
>> >> >> >> > "AWT-EventQueue-0"
>> >> >> >> > [_thread_in_native, id=5264,
>> >> >> >> > stack(0x0000000008ee0000,0x0000000008fe0000)]
>> >> >> >> > siginfo: ExceptionCode=0xc0000005,
>> >> >> >> > ExceptionInformation=0x0000000000000008
>> >> >> >> > 0x000020001ba29400
>> >> >> >> > Registers:
>> >> >> >> > RAX=0x000007fee9a7ffff, RBX=0x0000000007caf0c8,
>> >> >> >> > RCX=0x0000000007c00d90,
>> >> >> >> > RDX=0x0000000008fde720
>> >> >> >> > RSP=0x0000000008fde608, RBP=0x0000000007caf0d8,
>> >> >> >> > RSI=0x000000005976e7a0,
>> >> >> >> > RDI=0x0000000007cafff0
>> >> >> >> > R8=0x0000000000000000, R9=0x0000000000000009,
>> >> >> >> > R10=0x0000000006ba18b0,
>> >> >> >> > R11=0x0000000007cafff0
>> >> >> >> > R12=0x0000000007caf0d8, R13=0x0000000008fde720,
>> >> >> >> > R14=0x0000000007bdd2d0,
>> >> >> >> > R15=0x0000000000000002
>> >> >> >> > RIP=0x000020001ba29400, EFLAGS=0x0000000000010246
>> >> >> >> > Register to memory mapping:
>> >> >> >> > RAX=0x000007fee9a7ffff
>> >> >> >> > 0x000007fee9a7ffff is pointing to unknown location
>> >> >> >> > RBX=0x0000000007caf0c8
>> >> >> >> > 0x0000000007caf0c8 is pointing to unknown location
>> >> >> >> > RCX=0x0000000007c00d90
>> >> >> >> > 0x0000000007c00d90 is pointing to unknown location
>> >> >> >> > RDX=0x0000000008fde720
>> >> >> >> > 0x0000000008fde720 is pointing into the stack for thread:
>> >> >> >> > 0x0000000007e4c000
>> >> >> >> > "AWT-EventQueue-0" prio=6 tid=0x0000000007e4c000 nid=0x1490
>> >> >> >> > runnable
>> >> >> >> > [0x0000000008fde000]
>> >> >> >> > java.lang.Thread.State: RUNNABLE
>> >> >> >> > RSP=0x0000000008fde608
>> >> >> >> > 0x0000000008fde608 is pointing into the stack for thread:
>> >> >> >> > 0x0000000007e4c000
>> >> >> >> > "AWT-EventQueue-0" prio=6 tid=0x0000000007e4c000 nid=0x1490
>> >> >> >> > runnable
>> >> >> >> > [0x0000000008fde000]
>> >> >> >> > java.lang.Thread.State: RUNNABLE
>> >> >> >> > RBP=0x0000000007caf0d8
>> >> >> >> > 0x0000000007caf0d8 is pointing to unknown location
>> >> >> >> > RSI=0x000000005976e7a0
>> >> >> >> > 0x000000005976e7a0 is pointing to unknown location
>> >> >> >> > RDI=0x0000000007cafff0
>> >> >> >> > 0x0000000007cafff0 is pointing to unknown location
>> >> >> >> > R8 =0x0000000000000000
>> >> >> >> > 0x0000000000000000 is pointing to unknown location
>> >> >> >> > R9 =0x0000000000000009
>> >> >> >> > 0x0000000000000009 is pointing to unknown location
>> >> >> >> > R10=0x0000000006ba18b0
>> >> >> >> > 0x0000000006ba18b0 is pointing to unknown location
>> >> >> >> > R11=0x0000000007cafff0
>> >> >> >> > 0x0000000007cafff0 is pointing to unknown location
>> >> >> >> > R12=0x0000000007caf0d8
>> >> >> >> > 0x0000000007caf0d8 is pointing to unknown location
>> >> >> >> > R13=0x0000000008fde720
>> >> >> >> > 0x0000000008fde720 is pointing into the stack for thread:
>> >> >> >> > 0x0000000007e4c000
>> >> >> >> > "AWT-EventQueue-0" prio=6 tid=0x0000000007e4c000 nid=0x1490
>> >> >> >> > runnable
>> >> >> >> > [0x0000000008fde000]
>> >> >> >> > java.lang.Thread.State: RUNNABLE
>> >> >> >> > R14=0x0000000007bdd2d0
>> >> >> >> > 0x0000000007bdd2d0 is pointing to unknown location
>> >> >> >> > R15=0x0000000000000002
>> >> >> >> > 0x0000000000000002 is pointing to unknown location
>> >> >> >> >
>> >> >> >> > Top of Stack: (sp=0x0000000008fde608)
>> >> >> >> > 0x0000000008fde608: 000007fee995d99b 0000000007caf0c0
>> >> >> >> > 0x0000000008fde618: 0000000007caf0c0 000000005976e7a0
>> >> >> >> > 0x0000000008fde628: 0000000000000000 000000005976e7a0
>> >> >> >> > 0x0000000008fde638: 0000000007caf0b0 000000005976e7a0
>> >> >> >> > 0x0000000008fde648: 0000000007caf0b0 0000000000000000
>> >> >> >> > 0x0000000008fde658: 0000000008fde720 00000000bb8bd928
>> >> >> >> > 0x0000000008fde668: 0000000000000000 0000000000000000
>> >> >> >> > 0x0000000008fde678: 000007fee9960ab3 0000000008fde720
>> >> >> >> > 0x0000000008fde688: 0000000007cafff0 0000000000000000
>> >> >> >> > 0x0000000008fde698: 0000000000000000 0000000007e4c000
>> >> >> >> > 0x0000000008fde6a8: 0000000008fde950 00000000bb8bd928
>> >> >> >> > 0x0000000008fde6b8: 0000000000000000 0000000058511290
>> >> >> >> > 0x0000000008fde6c8: 000007fee9960e6f 0000000058511290
>> >> >> >> > 0x0000000008fde6d8: 0000000008fde928 00000000bca11e68
>> >> >> >> > 0x0000000008fde6e8: 0000000002407f03 00000000c0c06c78
>> >> >> >> > 0x0000000008fde6f8: 0000000008fde700 000000006df196a0
>> >> >> >> > Instructions: (pc=0x000020001ba29400)
>> >> >> >> > 0x000020001ba293f0:
>> >> >> >> > [error occurred during error reporting (printing registers, top
>> >> >> >> > of
>> >> >> >> > stack,
>> >> >> >> > instructions near pc), id 0xc0000005]
>> >> >> >> > Stack: [0x0000000008ee0000,0x0000000008fe0000],
>> >> >> >> > sp=0x0000000008fde608,
>> >> >> >> > free space=1017k
>> >> >> >> > Native frames: (J=compiled Java code, j=interpreted, Vv=VM
>> >> >> >> > code,
>> >> >> >> > C=native
>> >> >> >> > code)
>> >> >> >> > C 0x000020001ba29400
>> >> >> >> > Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
>> >> >> >> > j vtk.vtkObjectBase.VTKDeleteReference(J)V+0
>> >> >> >> > j vtk.vtkGlobalJavaHash.GC()I+73
>> >> >> >> > j prefs.ENV$MyVTKClean.run()V+18
>> >> >> >> > j java.awt.event.InvocationEvent.dispatch()V+47
>> >> >> >> > j
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > java.awt.EventQueue.dispatchEventImpl(Ljava/awt/AWTEvent;Ljava/lang/Object;)V+21
>> >> >> >> > j
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > java.awt.EventQueue.access$000(Ljava/awt/EventQueue;Ljava/awt/AWTEvent;Ljava/lang/Object;)V+3
>> >> >> >> > j java.awt.EventQueue$1.run()Ljava/lang/Void;+12
>> >> >> >> > j java.awt.EventQueue$1.run()Ljava/lang/Object;+1
>> >> >> >> > v ~StubRoutines::call_stub
>> >> >> >> > j
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0
>> >> >> >> > j
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;Ljava/security/AccessControlContext;)Ljava/lang/Object;+28
>> >> >> >> > j java.awt.EventQueue.dispatchEvent(Ljava/awt/AWTEvent;)V+46
>> >> >> >> > j java.awt.EventDispatchThread.pumpOneEventForFilters(I)Z+204
>> >> >> >> > j
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > java.awt.EventDispatchThread.pumpEventsForFilter(ILjava/awt/Conditional;Ljava/awt/EventFilter;)V+30
>> >> >> >> > j
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > java.awt.EventDispatchThread.pumpEventsForHierarchy(ILjava/awt/Conditional;Ljava/awt/Component;)V+11
>> >> >> >> > j
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > java.awt.EventDispatchThread.pumpEvents(ILjava/awt/Conditional;)V+4
>> >> >> >> > j
>> >> >> >> >
>> >> >> >> > java.awt.EventDispatchThread.pumpEvents(Ljava/awt/Conditional;)V+3
>> >> >> >> > j java.awt.EventDispatchThread.run()V+9
>> >> >> >> > v ~StubRoutines::call_stub
>> >> >> >> > --------------- P R O C E S S ---------------
>> >> >> >> > Java Threads: ( => current thread )
>> >> >> >> > 0x0000000009609800 JavaThread "Timer-4" [_thread_in_native,
>> >> >> >> > id=5844,
>> >> >> >> > stack(0x0000000051110000,0x0000000051210000)]
>> >> >> >> > 0x000000000960c800 JavaThread "SwingWorker-pool-4-thread-1"
>> >> >> >> > daemon
>> >> >> >> > [_thread_blocked, id=6424,
>> >> >> >> > stack(0x0000000053a00000,0x0000000053b00000)]
>> >> >> >> > 0x000000000960b000 JavaThread "pool-1-thread-1"
>> >> >> >> > [_thread_blocked,
>> >> >> >> > id=3136,
>> >> >> >> > stack(0x000000000bd50000,0x000000000be50000)]
>> >> >> >> > 0x0000000009608800 JavaThread "DestroyJavaVM"
>> >> >> >> > [_thread_blocked,
>> >> >> >> > id=5108,
>> >> >> >> > stack(0x00000000022e0000,0x00000000023e0000)]
>> >> >> >> > 0x0000000009608000 JavaThread "TimerQueue" daemon
>> >> >> >> > [_thread_blocked,
>> >> >> >> > id=6340, stack(0x000000000a8f0000,0x000000000a9f0000)]
>> >> >> >> > 0x0000000007f2c000 JavaThread "Timer-2" [_thread_blocked,
>> >> >> >> > id=6600,
>> >> >> >> > stack(0x00000000090e0000,0x00000000091e0000)]
>> >> >> >> > 0x0000000007f2b000 JavaThread "Timer-1" [_thread_blocked,
>> >> >> >> > id=3288,
>> >> >> >> > stack(0x0000000008c40000,0x0000000008d40000)]
>> >> >> >> > 0x00000000061b0000 JavaThread "ssh-connection 1" daemon
>> >> >> >> > [_thread_blocked,
>> >> >> >> > id=6048, stack(0x00000000086f0000,0x00000000087f0000)]
>> >> >> >> > 0x00000000080d0000 JavaThread "Transport protocol 1" daemon
>> >> >> >> > [_thread_in_native, id=4200,
>> >> >> >> > stack(0x000000000a730000,0x000000000a830000)]
>> >> >> >> > 0x0000000007e4c800 JavaThread "Timer-0" [_thread_blocked,
>> >> >> >> > id=2128,
>> >> >> >> > stack(0x0000000008fe0000,0x00000000090e0000)]
>> >> >> >> > =>0x0000000007e4c000 JavaThread "AWT-EventQueue-0"
>> >> >> >> > [_thread_in_native,
>> >> >> >> > id=5264, stack(0x0000000008ee0000,0x0000000008fe0000)]
>> >> >> >> > 0x000000000625f800 JavaThread "AWT-Windows" daemon
>> >> >> >> > [_thread_in_native,
>> >> >> >> > id=6700, stack(0x00000000085f0000,0x00000000086f0000)]
>> >> >> >> > 0x000000000625e800 JavaThread "AWT-Shutdown"
>> >> >> >> > [_thread_blocked,
>> >> >> >> > id=2500,
>> >> >> >> > stack(0x00000000084f0000,0x00000000085f0000)]
>> >> >> >> > 0x000000000611b000 JavaThread "Java2D Disposer" daemon
>> >> >> >> > [_thread_blocked,
>> >> >> >> > id=4280, stack(0x00000000083f0000,0x00000000084f0000)]
>> >> >> >> > 0x00000000060c7800 JavaThread "Low Memory Detector" daemon
>> >> >> >> > [_thread_blocked, id=4272,
>> >> >> >> > stack(0x0000000006980000,0x0000000006a80000)]
>> >> >> >> > 0x00000000060c7000 JavaThread "CompilerThread1" daemon
>> >> >> >> > [_thread_blocked,
>> >> >> >> > id=2744, stack(0x0000000006880000,0x0000000006980000)]
>> >> >> >> > 0x00000000060c3000 JavaThread "CompilerThread0" daemon
>> >> >> >> > [_thread_blocked,
>> >> >> >> > id=5308, stack(0x0000000006780000,0x0000000006880000)]
>> >> >> >> > 0x00000000060ae800 JavaThread "JDWP Command Reader" daemon
>> >> >> >> > [_thread_in_native, id=5568,
>> >> >> >> > stack(0x0000000006680000,0x0000000006780000)]
>> >> >> >> > 0x00000000060ab000 JavaThread "JDWP Event Helper Thread"
>> >> >> >> > daemon
>> >> >> >> > [_thread_blocked, id=6736,
>> >> >> >> > stack(0x0000000006580000,0x0000000006680000)]
>> >> >> >> > 0x00000000060a5000 JavaThread "JDWP Transport Listener:
>> >> >> >> > dt_shmem"
>> >> >> >> > daemon
>> >> >> >> > [_thread_blocked, id=1744,
>> >> >> >> > stack(0x0000000006480000,0x0000000006580000)]
>> >> >> >> > 0x00000000003e6800 JavaThread "Attach Listener" daemon
>> >> >> >> > [_thread_blocked,
>> >> >> >> > id=6416, stack(0x0000000006360000,0x0000000006460000)]
>> >> >> >> > 0x00000000060a0800 JavaThread "Signal Dispatcher" daemon
>> >> >> >> > [_thread_blocked,
>> >> >> >> > id=6608, stack(0x0000000006260000,0x0000000006360000)]
>> >> >> >> > 0x00000000003cd800 JavaThread "Finalizer" daemon
>> >> >> >> > [_thread_blocked,
>> >> >> >> > id=5328, stack(0x0000000005f60000,0x0000000006060000)]
>> >> >> >> > 0x00000000003ca000 JavaThread "Reference Handler" daemon
>> >> >> >> > [_thread_blocked,
>> >> >> >> > id=6568, stack(0x0000000005e60000,0x0000000005f60000)]
>> >> >> >> > Other Threads:
>> >> >> >> > 0x00000000003c3800 VMThread [stack:
>> >> >> >> > 0x0000000005d60000,0x0000000005e60000]
>> >> >> >> > [id=6624]
>> >> >> >> > 0x00000000060cd800 WatcherThread [stack:
>> >> >> >> > 0x0000000006a80000,0x0000000006b80000] [id=968]
>> >> >> >> > VM state:not at safepoint (normal execution)
>> >> >> >> > VM Mutex/Monitor currently owned by a thread: None
>> >> >> >> > Heap
>> >> >> >> > PSYoungGen total 18944K, used 491K [0x00000000ead60000,
>> >> >> >> > 0x00000000ec280000, 0x0000000100000000)
>> >> >> >> > eden space 16256K, 3% used
>> >> >> >> > [0x00000000ead60000,0x00000000eaddae10,0x00000000ebd40000)
>> >> >> >> > from space 2688K, 0% used
>> >> >> >> > [0x00000000ebfe0000,0x00000000ebfe0000,0x00000000ec280000)
>> >> >> >> > to space 2688K, 0% used
>> >> >> >> > [0x00000000ebd40000,0x00000000ebd40000,0x00000000ebfe0000)
>> >> >> >> > PSOldGen total 43392K, used 10564K [0x00000000c0800000,
>> >> >> >> > 0x00000000c3260000, 0x00000000ead60000)
>> >> >> >> > object space 43392K, 24% used
>> >> >> >> > [0x00000000c0800000,0x00000000c1251378,0x00000000c3260000)
>> >> >> >> > PSPermGen total 23616K, used 23499K [0x00000000bb600000,
>> >> >> >> > 0x00000000bcd10000, 0x00000000c0800000)
>> >> >> >> > object space 23616K, 99% used
>> >> >> >> > [0x00000000bb600000,0x00000000bccf2d70,0x00000000bcd10000)
>> >> >> >> > Dynamic libraries:
>> >> >> >> > 0x0000000000400000 - 0x000000000042e000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\java.exe
>> >> >> >> > 0x00000000775d0000 - 0x0000000077779000
>> >> >> >> > C:\Windows\SYSTEM32\ntdll.dll
>> >> >> >> > 0x00000000773b0000 - 0x00000000774cf000
>> >> >> >> > C:\Windows\system32\kernel32.dll
>> >> >> >> > 0x000007fefcac0000 - 0x000007fefcb2b000
>> >> >> >> > C:\Windows\system32\KERNELBASE.dll
>> >> >> >> > 0x000007fefe6b0000 - 0x000007fefe78b000
>> >> >> >> > C:\Windows\system32\ADVAPI32.dll
>> >> >> >> > 0x000007fefce70000 - 0x000007fefcf0f000
>> >> >> >> > C:\Windows\system32\msvcrt.dll
>> >> >> >> > 0x000007fefece0000 - 0x000007fefecff000
>> >> >> >> > C:\Windows\SYSTEM32\sechost.dll
>> >> >> >> > 0x000007fefe090000 - 0x000007fefe1bd000
>> >> >> >> > C:\Windows\system32\RPCRT4.dll
>> >> >> >> > 0x000000006d890000 - 0x000000006df94000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\server\jvm.dll
>> >> >> >> > 0x00000000774d0000 - 0x00000000775ca000
>> >> >> >> > C:\Windows\system32\USER32.dll
>> >> >> >> > 0x000007fefd290000 - 0x000007fefd2f7000
>> >> >> >> > C:\Windows\system32\GDI32.dll
>> >> >> >> > 0x000007fefd280000 - 0x000007fefd28e000
>> >> >> >> > C:\Windows\system32\LPK.dll
>> >> >> >> > 0x000007fefed00000 - 0x000007fefedc9000
>> >> >> >> > C:\Windows\system32\USP10.dll
>> >> >> >> > 0x000007fef9d90000 - 0x000007fef9dcb000
>> >> >> >> > C:\Windows\system32\WINMM.dll
>> >> >> >> > 0x000007fefe790000 - 0x000007fefe7be000
>> >> >> >> > C:\Windows\system32\IMM32.DLL
>> >> >> >> > 0x000007fefe390000 - 0x000007fefe499000
>> >> >> >> > C:\Windows\system32\MSCTF.dll
>> >> >> >> > 0x000000006d800000 - 0x000000006d80e000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\verify.dll
>> >> >> >> > 0x000000006d450000 - 0x000000006d477000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\java.dll
>> >> >> >> > 0x000000006d3b0000 - 0x000000006d3ba000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\hpi.dll
>> >> >> >> > 0x00000000777a0000 - 0x00000000777a7000
>> >> >> >> > C:\Windows\system32\PSAPI.DLL
>> >> >> >> > 0x000000006d4c0000 - 0x000000006d4f4000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\jdwp.dll
>> >> >> >> > 0x000000006d6d0000 - 0x000000006d6d8000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\npt.dll
>> >> >> >> > 0x000000006d850000 - 0x000000006d862000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\zip.dll
>> >> >> >> > 0x000000006d300000 - 0x000000006d30a000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\dt_shmem.dll
>> >> >> >> > 0x000007fef1360000 - 0x000007fef13cb000
>> >> >> >> > C:\Users\...\dist\64\vtkCommonJava.dll
>> >> >> >> > 0x000007fee9900000 - 0x000007fee9b6f000
>> >> >> >> > C:\Users\...\dist\64\vtkCommon.dll
>> >> >> >> > 0x000007fef4bf0000 - 0x000007fef4c32000
>> >> >> >> > C:\Users\...\dist\64\vtksys.dll
>> >> >> >> > 0x000007fefd1d0000 - 0x000007fefd21d000
>> >> >> >> > C:\Windows\system32\WS2_32.dll
>> >> >> >> > 0x000007fefcde0000 - 0x000007fefcde8000
>> >> >> >> > C:\Windows\system32\NSI.dll
>> >> >> >> > 0x0000000072850000 - 0x00000000728ed000
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > C:\Windows\WinSxS\amd64_microsoft.vc90.crt_1fc8b3b9a1e18e3b_9.0.30729.4940_none_08e4299fa83d7e3c\MSVCR90.dll
>> >> >> >> > 0x0000000074590000 - 0x0000000074663000
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > C:\Windows\WinSxS\amd64_microsoft.vc90.crt_1fc8b3b9a1e18e3b_9.0.30729.4940_none_08e4299fa83d7e3c\MSVCP90.dll
>> >> >> >> > 0x000007fef0410000 - 0x000007fef0419000
>> >> >> >> > C:\Windows\system32\WSOCK32.dll
>> >> >> >> > 0x000007feedb20000 - 0x000007feedbbc000
>> >> >> >> > C:\Users\...\dist\64\vtkFilteringJava.dll
>> >> >> >> > 0x000007fee95e0000 - 0x000007fee98f2000
>> >> >> >> > C:\Users\...\dist\64\vtkFiltering.dll
>> >> >> >> > 0x000007fef9f90000 - 0x000007fef9f9f000
>> >> >> >> > C:\Users\...\dist\64\vtkGenericFilteringJava.dll
>> >> >> >> > 0x000007fef1320000 - 0x000007fef1356000
>> >> >> >> > C:\Users\...\dist\64\vtkGenericFiltering.dll
>> >> >> >> > 0x000007fee8fe0000 - 0x000007fee95d6000
>> >> >> >> > C:\Users\...\dist\64\vtkGraphics.dll
>> >> >> >> > 0x000007fef0a60000 - 0x000007fef0a91000
>> >> >> >> > C:\Users\...\dist\64\vtkverdict.dll
>> >> >> >> > 0x000007feef720000 - 0x000007feef7b2000
>> >> >> >> > C:\Users\...\dist\64\vtkGraphicsJava.dll
>> >> >> >> > 0x000007fef1290000 - 0x000007fef12df000
>> >> >> >> > C:\Users\...\dist\64\vtkHybridJava.dll
>> >> >> >> > 0x000007fee8d30000 - 0x000007fee8fd1000
>> >> >> >> > C:\Users\...\dist\64\vtkHybrid.dll
>> >> >> >> > 0x000007fee88d0000 - 0x000007fee8d22000
>> >> >> >> > C:\Users\...\dist\64\vtkRendering.dll
>> >> >> >> > 0x000007fefe4a0000 - 0x000007fefe6a3000
>> >> >> >> > C:\Windows\system32\ole32.dll
>> >> >> >> > 0x000007fefe7c0000 - 0x000007fefe897000
>> >> >> >> > C:\Windows\system32\OLEAUT32.dll
>> >> >> >> > 0x000007fee8600000 - 0x000007fee88ce000
>> >> >> >> > C:\Users\...\dist\64\vtkImaging.dll
>> >> >> >> > 0x000007fee8150000 - 0x000007fee85f9000
>> >> >> >> > C:\Users\...\dist\64\vtkIO.dll
>> >> >> >> > 0x000007fef4bc0000 - 0x000007fef4be3000
>> >> >> >> > C:\Users\...\dist\64\vtkDICOMParser.dll
>> >> >> >> > 0x000007feed060000 - 0x000007feed110000
>> >> >> >> > C:\Users\...\dist\64\vtkNetCDF.dll
>> >> >> >> > 0x000007fef9f70000 - 0x000007fef9f8d000
>> >> >> >> > C:\Users\...\dist\64\vtkNetCDF_cxx.dll
>> >> >> >> > 0x000007feed560000 - 0x000007feed5f3000
>> >> >> >> > C:\Users\...\dist\64\vtkmetaio.dll
>> >> >> >> > 0x000007fef0a40000 - 0x000007fef0a55000
>> >> >> >> > C:\Users\...\dist\64\vtkzlib.dll
>> >> >> >> > 0x000007fef0a10000 - 0x000007fef0a33000
>> >> >> >> > C:\Users\...\dist\64\vtkpng.dll
>> >> >> >> > 0x000007feef6b0000 - 0x000007feef6d7000
>> >> >> >> > C:\Users\...\dist\64\vtkjpeg.dll
>> >> >> >> > 0x000007feee410000 - 0x000007feee461000
>> >> >> >> > C:\Users\...\dist\64\vtktiff.dll
>> >> >> >> > 0x000007feee3e0000 - 0x000007feee403000
>> >> >> >> > C:\Users\...\dist\64\vtkexpat.dll
>> >> >> >> > 0x000007fef0580000 - 0x000007fef059f000
>> >> >> >> > C:\Windows\system32\AVIFIL32.dll
>> >> >> >> > 0x000007fef9d20000 - 0x000007fef9d38000
>> >> >> >> > C:\Windows\system32\MSACM32.dll
>> >> >> >> > 0x000007feee350000 - 0x000007feee379000
>> >> >> >> > C:\Windows\system32\MSVFW32.dll
>> >> >> >> > 0x000007fefd300000 - 0x000007fefe088000
>> >> >> >> > C:\Windows\system32\SHELL32.dll
>> >> >> >> > 0x000007fefcdf0000 - 0x000007fefce61000
>> >> >> >> > C:\Windows\system32\SHLWAPI.dll
>> >> >> >> > 0x000007fefb4e0000 - 0x000007fefb6d4000
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > C:\Windows\WinSxS\amd64_microsoft.windows.common-controls_6595b64144ccf1df_6.0.7601.17514_none_fa396087175ac9ac\COMCTL32.dll
>> >> >> >> > 0x000007fef9eb0000 - 0x000007fef9ebf000
>> >> >> >> > C:\Users\...\dist\64\vtkftgl.dll
>> >> >> >> > 0x000007fee9cc0000 - 0x000007fee9ddd000
>> >> >> >> > C:\Windows\system32\OPENGL32.dll
>> >> >> >> > 0x000007feedaf0000 - 0x000007feedb1d000
>> >> >> >> > C:\Windows\system32\GLU32.dll
>> >> >> >> > 0x000007fee9bc0000 - 0x000007fee9cb1000
>> >> >> >> > C:\Windows\system32\DDRAW.dll
>> >> >> >> > 0x000007fef9420000 - 0x000007fef9428000
>> >> >> >> > C:\Windows\system32\DCIMAN32.dll
>> >> >> >> > 0x000007fefe8a0000 - 0x000007fefea77000
>> >> >> >> > C:\Windows\system32\SETUPAPI.dll
>> >> >> >> > 0x000007fefcb30000 - 0x000007fefcb66000
>> >> >> >> > C:\Windows\system32\CFGMGR32.dll
>> >> >> >> > 0x000007fefcdc0000 - 0x000007fefcdda000
>> >> >> >> > C:\Windows\system32\DEVOBJ.dll
>> >> >> >> > 0x000007fefaed0000 - 0x000007fefaee8000
>> >> >> >> > C:\Windows\system32\dwmapi.dll
>> >> >> >> > 0x000007feed4e0000 - 0x000007feed554000
>> >> >> >> > C:\Users\...\dist\64\vtkfreetype.dll
>> >> >> >> > 0x000007fee7f50000 - 0x000007fee814f000
>> >> >> >> > C:\Windows\system32\d3d9.dll
>> >> >> >> > 0x000007fefb9d0000 - 0x000007fefb9dc000
>> >> >> >> > C:\Windows\system32\VERSION.dll
>> >> >> >> > 0x000007fef8870000 - 0x000007fef8877000
>> >> >> >> > C:\Windows\system32\d3d8thk.dll
>> >> >> >> > 0x000007feedaa0000 - 0x000007feedae5000
>> >> >> >> > C:\Users\...\dist\64\vtkexoIIc.dll
>> >> >> >> > 0x000007feefc40000 - 0x000007feefc57000
>> >> >> >> > C:\Windows\system32\AVICAP32.dll
>> >> >> >> > 0x000007feec740000 - 0x000007feec7c1000
>> >> >> >> > C:\Users\...\dist\64\vtkRenderingJava.dll
>> >> >> >> > 0x000000006d490000 - 0x000000006d497000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\jawt.dll
>> >> >> >> > 0x000000006d0a0000 - 0x000000006d263000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\awt.dll
>> >> >> >> > 0x000007fef8bc0000 - 0x000007fef8c31000
>> >> >> >> > C:\Windows\system32\WINSPOOL.DRV
>> >> >> >> > 0x000007feed010000 - 0x000007feed05e000
>> >> >> >> > C:\Users\...\dist\64\vtkIOJava.dll
>> >> >> >> > 0x000007feec6f0000 - 0x000007feec732000
>> >> >> >> > C:\Users\...\dist\64\vtkImagingJava.dll
>> >> >> >> > 0x000007feed4b0000 - 0x000007feed4d3000
>> >> >> >> > C:\Users\...\dist\64\vtkVolumeRenderingJava.dll
>> >> >> >> > 0x000007fee7ad0000 - 0x000007fee7f48000
>> >> >> >> > C:\Users\...\dist\64\vtkVolumeRendering.dll
>> >> >> >> > 0x000007fee7a70000 - 0x000007fee7ac2000
>> >> >> >> > C:\Users\...\dist\64\vtkWidgetsJava.dll
>> >> >> >> > 0x000007fee78e0000 - 0x000007fee7a6e000
>> >> >> >> > C:\Users\...\dist\64\vtkWidgets.dll
>> >> >> >> > 0x000007fee9b90000 - 0x000007fee9bb8000
>> >> >> >> > C:\Users\...\dist\64\vtkgdcmJava.dll
>> >> >> >> > 0x000007fee7820000 - 0x000007fee78df000
>> >> >> >> > C:\Users\...\dist\64\vtkgdcm.dll
>> >> >> >> > 0x000007fee7710000 - 0x000007fee781e000
>> >> >> >> > C:\Users\...\dist\64\gdcmMSFF.dll
>> >> >> >> > 0x000007fee76e0000 - 0x000007fee7710000
>> >> >> >> > C:\Users\...\dist\64\gdcmIOD.dll
>> >> >> >> > 0x000007fee7660000 - 0x000007fee76d5000
>> >> >> >> > C:\Users\...\dist\64\gdcmDSED.dll
>> >> >> >> > 0x000007feef470000 - 0x000007feef484000
>> >> >> >> > C:\Users\...\dist\64\gdcmCommon.dll
>> >> >> >> > 0x000007feec230000 - 0x000007feec246000
>> >> >> >> > C:\Users\...\dist\64\gdcmzlib.dll
>> >> >> >> > 0x000007fee7630000 - 0x000007fee7653000
>> >> >> >> > C:\Users\...\dist\64\gdcmexpat.dll
>> >> >> >> > 0x000007fee74d0000 - 0x000007fee762b000
>> >> >> >> > C:\Users\...\dist\64\gdcmDICT.dll
>> >> >> >> > 0x000007fee74a0000 - 0x000007fee74cb000
>> >> >> >> > C:\Users\...\dist\64\gdcmjpeg8.dll
>> >> >> >> > 0x000007fee7470000 - 0x000007fee749b000
>> >> >> >> > C:\Users\...\dist\64\gdcmjpeg12.dll
>> >> >> >> > 0x000007fee7440000 - 0x000007fee746c000
>> >> >> >> > C:\Users\...\dist\64\gdcmjpeg16.dll
>> >> >> >> > 0x000007fee7410000 - 0x000007fee7437000
>> >> >> >> > C:\Users\...\dist\64\gdcmopenjpeg.dll
>> >> >> >> > 0x000007fee73d0000 - 0x000007fee7409000
>> >> >> >> > C:\Users\...\dist\64\gdcmcharls.dll
>> >> >> >> > 0x000007fefb300000 - 0x000007fefb356000
>> >> >> >> > C:\Windows\system32\uxtheme.dll
>> >> >> >> > 0x000007fefc940000 - 0x000007fefc94f000
>> >> >> >> > C:\Windows\system32\CRYPTBASE.dll
>> >> >> >> > 0x000000006d340000 - 0x000000006d3a6000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\fontmanager.dll
>> >> >> >> > 0x000000006d6a0000 - 0x000000006d6b7000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\net.dll
>> >> >> >> > 0x000007fefc240000 - 0x000007fefc295000
>> >> >> >> > C:\Windows\system32\mswsock.dll
>> >> >> >> > 0x000007fefc230000 - 0x000007fefc237000
>> >> >> >> > C:\Windows\System32\wship6.dll
>> >> >> >> > 0x000000006d6c0000 - 0x000000006d6cb000 C:\Program
>> >> >> >> > Files\Java\jdk1.6.0_24\jre\bin\nio.dll
>> >> >> >> > 0x000007fee7360000 - 0x000007fee73cf000
>> >> >> >> > C:\Users\...\dist\64\gdcmjni.dll
>> >> >> >> > 0x000007fefc2e0000 - 0x000007fefc2f7000
>> >> >> >> > C:\Windows\system32\CRYPTSP.dll
>> >> >> >> > 0x000007fefbfa0000 - 0x000007fefbfe7000
>> >> >> >> > C:\Windows\system32\rsaenh.dll
>> >> >> >> > 0x000007fefbd50000 - 0x000007fefbd6e000
>> >> >> >> > C:\Windows\system32\USERENV.dll
>> >> >> >> > 0x000007fefca10000 - 0x000007fefca1f000
>> >> >> >> > C:\Windows\system32\profapi.dll
>> >> >> >> > 0x000007fefa4e0000 - 0x000007fefa4f5000
>> >> >> >> > C:\Windows\system32\NLAapi.dll
>> >> >> >> > 0x000007fef89e0000 - 0x000007fef89f5000
>> >> >> >> > C:\Windows\system32\napinsp.dll
>> >> >> >> > 0x000007fef89c0000 - 0x000007fef89d9000
>> >> >> >> > C:\Windows\system32\pnrpnsp.dll
>> >> >> >> > 0x000007fef89b0000 - 0x000007fef89c0000
>> >> >> >> > C:\Windows\system32\wshbth.dll
>> >> >> >> > 0x000007fefc0c0000 - 0x000007fefc11b000
>> >> >> >> > C:\Windows\system32\DNSAPI.dll
>> >> >> >> > 0x000007fef89a0000 - 0x000007fef89ab000
>> >> >> >> > C:\Windows\System32\winrnr.dll
>> >> >> >> > 0x000007fefbc40000 - 0x000007fefbc47000
>> >> >> >> > C:\Windows\System32\wshtcpip.dll
>> >> >> >> > 0x000007fef9f30000 - 0x000007fef9f57000
>> >> >> >> > C:\Windows\system32\IPHLPAPI.DLL
>> >> >> >> > 0x000007fef9f60000 - 0x000007fef9f6b000
>> >> >> >> > C:\Windows\system32\WINNSI.DLL
>> >> >> >> > 0x000007fef8990000 - 0x000007fef8998000
>> >> >> >> > C:\Windows\system32\rasadhlp.dll
>> >> >> >> > 0x000007fef9ec0000 - 0x000007fef9f13000
>> >> >> >> > C:\Windows\System32\fwpuclnt.dll
>> >> >> >> > 0x000007fefcd80000 - 0x000007fefcdba000
>> >> >> >> > C:\Windows\system32\WINTRUST.dll
>> >> >> >> > 0x000007fefcb70000 - 0x000007fefccd7000
>> >> >> >> > C:\Windows\system32\CRYPT32.dll
>> >> >> >> > 0x000007fefcab0000 - 0x000007fefcabf000
>> >> >> >> > C:\Windows\system32\MSASN1.dll
>> >> >> >> > 0x0000000069500000 - 0x000000006a195000
>> >> >> >> > C:\Windows\system32\nvoglv64.DLL
>> >> >> >> > VM Arguments:
>> >> >> >> > jvm_args: -Xdebug
>> >> >> >> > -Xrunjdwp:transport=dt_shmem,address=javadebug
>> >> >> >> > -Dfile.encoding=UTF-8 -Dsun.java2d.ddoffscreen=false
>> >> >> >> > -Dsun.java2d.gdiblit=false
>> >> >> >> > java_command: Application yes no
>> >> >> >> > Launcher Type: SUN_STANDARD
>> >> >> >> > Environment Variables:
>> >> >> >> > JAVA_HOME=C:\Program Files\Java\jdk1.6.0_18
>> >> >> >> > PATH=C:\Program Files (x86)\MiKTeX
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > 2.8\miktex\bin;C:\Ruby19\bin;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\strawberry\c\bin;C:\strawberry\perl\bin;c:\Program
>> >> >> >> > Files (x86)\Microsoft SQL Server\90\Tools\binn\;C:\Program
>> >> >> >> > Files\MySQL\MySQL
>> >> >> >> > Server
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > 5.1\bin;C:\Users\jmorra\Downloads\dcm4che\dcm4che-2.0.21\bin;C:\Users\...\dist\64;C:\Program
>> >> >> >> > Files (x86)\Calibre2\;C:\Program Files (x86)\SSH Communications
>> >> >> >> > Security\SSH
>> >> >> >> > Secure Shell
>> >> >> >> > USERNAME=jmorra
>> >> >> >> > OS=Windows_NT
>> >> >> >> > PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 23 Stepping 10,
>> >> >> >> > GenuineIntel
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > --------------- S Y S T E M ---------------
>> >> >> >> > OS: Windows 7 Build 7601 Service Pack 1
>> >> >> >> > CPU:total 2 (2 cores per cpu, 1 threads per core) family 6
>> >> >> >> > model
>> >> >> >> > 23
>> >> >> >> > stepping
>> >> >> >> > 10, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1
>> >> >> >> > Memory: 4k page, physical 4158344k(884196k free), swap
>> >> >> >> > 8314844k(3659748k
>> >> >> >> > free)
>> >> >> >> > vm_info: Java HotSpot(TM) 64-Bit Server VM (19.1-b02) for
>> >> >> >> > windows-amd64
>> >> >> >> > JRE
>> >> >> >> > (1.6.0_24-b07), built on Feb 2 2011 16:25:45 by "java_re" with
>> >> >> >> > MS
>> >> >> >> > VC++
>> >> >> >> > 8.0
>> >> >> >> > (VS2005)
>> >> >> >> > time: Tue Mar 29 11:21:13 2011
>> >> >> >> > elapsed time: 50 seconds
>> >> >> >> >
>> >> >> >> > On Tue, Mar 29, 2011 at 8:27 AM, Sebastien Jourdain
>> >> >> >> > <sebastien.jourdain at kitware.com> wrote:
>> >> >> >> >>
>> >> >> >> >> As I said, since a double[] is not a vtkObject, your are good
>> >> >> >> >> to
>> >> >> >> >> go
>> >> >> >> >> with image.GetSpacing(), and there is no arm in that.
>> >> >> >> >> It is not that it make java difficult to use, it will induce
>> >> >> >> >> more
>> >> >> >> >> lines. But don't make me wrong this problem occurs ONLY when
>> >> >> >> >> you
>> >> >> >> >> bind
>> >> >> >> >> two vtkObject together whithout any Java instance holding the
>> >> >> >> >> reference in between.
>> >> >> >> >>
>> >> >> >> >> BAD => a.SetX(b.GetY());
>> >> >> >> >>
>> >> >> >> >> But you can do
>> >> >> >> >>
>> >> >> >> >> z = a.GetX().GetY().GetZ();
>> >> >> >> >> b.SetZ(z);
>> >> >> >> >>
>> >> >> >> >> or that too
>> >> >> >> >>
>> >> >> >> >> b.SetZ(z = a.GetX().GetY().GetZ());
>> >> >> >> >>
>> >> >> >> >> Seb
>> >> >> >> >>
>> >> >> >> >> On Tue, Mar 29, 2011 at 11:10 AM, Jonathan Morra
>> >> >> >> >> <jonmorra at gmail.com>
>> >> >> >> >> wrote:
>> >> >> >> >> > Thanks for your help. For number 3, image.GetSpacing() is a
>> >> >> >> >> > VTK
>> >> >> >> >> > call,
>> >> >> >> >> > however it returns a java double[], so I thought that it was
>> >> >> >> >> > OK.
>> >> >> >> >> > All
>> >> >> >> >> > these
>> >> >> >> >> > memory restrictions in Java make it very difficult to use,
>> >> >> >> >> > is
>> >> >> >> >> > there
>> >> >> >> >> > any
>> >> >> >> >> > plans to improve the usage of VTK in Java?
>> >> >> >> >> > Thanks again!
>> >> >> >> >> >
>> >> >> >> >> > On Tue, Mar 29, 2011 at 5:26 AM, Sebastien Jourdain
>> >> >> >> >> > <sebastien.jourdain at kitware.com> wrote:
>> >> >> >> >> >>
>> >> >> >> >> >> Hi Jonathan,
>> >> >> >> >> >>
>> >> >> >> >> >> I directly reply on the context of your mail,
>> >> >> >> >> >>
>> >> >> >> >> >>
>> >> >> >> >> >> On Tue, Mar 29, 2011 at 2:33 AM, Jonathan Morra
>> >> >> >> >> >> <jonmorra at gmail.com>
>> >> >> >> >> >> wrote:
>> >> >> >> >> >> > Since I'm using vtkJavaGarbageCollector I'm already using
>> >> >> >> >> >> > vtkGlobalJavaHash.GC();. The main questions that I
>> >> >> >> >> >> > currently
>> >> >> >> >> >> > still
>> >> >> >> >> >> > need
>> >> >> >> >> >> > answered are here
>> >> >> >> >> >> > 1. should I have to call System.gc(); and
>> >> >> >> >> >> > System.runFinalization();
>> >> >> >> >> >> > frequently with VTK+Java? It appears the memory is
>> >> >> >> >> >> > managed
>> >> >> >> >> >> > better
>> >> >> >> >> >> > when
>> >> >> >> >> >> > calling these lines every time vtkGlobalJavaHash.GC() is
>> >> >> >> >> >> > called,
>> >> >> >> >> >> > but
>> >> >> >> >> >> > I
>> >> >> >> >> >> > don't
>> >> >> >> >> >> > know if this is necessary.
>> >> >> >> >> >>
>> >> >> >> >> >> System.gc(); is the only one that you should really care
>> >> >> >> >> >> about.
>> >> >> >> >> >> But
>> >> >> >> >> >> Java does not offer any guarantee if this method will do
>> >> >> >> >> >> something
>> >> >> >> >> >> or
>> >> >> >> >> >> not. Moreover, the GC will stop all the thread to do its
>> >> >> >> >> >> job.
>> >> >> >> >> >> So
>> >> >> >> >> >> it
>> >> >> >> >> >> is basically up to you.
>> >> >> >> >> >>
>> >> >> >> >> >> > 2. Is it ok to reuse Java variables? Such as
>> >> >> >> >> >> > vtkImageData image = filter.GetOuput();
>> >> >> >> >> >> > // Do Stuff
>> >> >> >> >> >> > image = filter2.GetOuput();
>> >> >> >> >> >>
>> >> >> >> >> >> yes
>> >> >> >> >> >>
>> >> >> >> >> >> > 3. Is it OK to move around java objects without an
>> >> >> >> >> >> > intermediate
>> >> >> >> >> >> > reference?
>> >> >> >> >> >> > Such as
>> >> >> >> >> >> > image1.SetOutputSpacing(image2.GetSpacing());
>> >> >> >> >> >>
>> >> >> >> >> >> what do you mean by Java object ? for me as the Set/Get do
>> >> >> >> >> >> have a
>> >> >> >> >> >> capital letter, I would say they come from the VTK world
>> >> >> >> >> >> and
>> >> >> >> >> >> if
>> >> >> >> >> >> they
>> >> >> >> >> >> return a vtkObject, you should use an intermediate variable
>> >> >> >> >> >> otherwise
>> >> >> >> >> >> if it's an array of primary type, that is just fine.
>> >> >> >> >> >>
>> >> >> >> >> >> > Sorry, forgot one more. Should I be calling
>> >> >> >> >> >> > vtkGlobalJavaHash.GC()
>> >> >> >> >> >> > from
>> >> >> >> >> >> > the event dispatch thread?
>> >> >> >> >> >> > I saw that as an option in vtkJavaGarbageCollector, and
>> >> >> >> >> >> > I'm
>> >> >> >> >> >> > not
>> >> >> >> >> >> > sure
>> >> >> >> >> >> > why
>> >> >> >> >> >> > that's the case.
>> >> >> >> >> >>
>> >> >> >> >> >> This totally depend on your VTK code, if you insure that
>> >> >> >> >> >> all
>> >> >> >> >> >> the
>> >> >> >> >> >> call
>> >> >> >> >> >> you are doing on the VTK layer is done through the EDT,
>> >> >> >> >> >> then
>> >> >> >> >> >> you
>> >> >> >> >> >> should, otherwise you shouldn't. (This is a requirement if
>> >> >> >> >> >> the
>> >> >> >> >> >> data
>> >> >> >> >> >> is
>> >> >> >> >> >> shown in a renderer.)
>> >> >> >> >> >>
>> >> >> >> >> >> Seb
>> >> >> >> >> >
>> >> >> >> >> >
>> >> >> >> >
>> >> >> >> >
>> >> >> >
>> >> >> >
>> >> >
>> >> >
>> >
>> >
>
>
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