<div dir="ltr">You might be the first to compile hdf5 onto android. We cross compile xdmf and hdf5 frequently, but only for supercomputer tool chains (cray-gnu and bluegene-xlc specifically).<div><div><br></div><div>As far as I know there is no easy way to remove the hdf5 dependency from xdmf. xdmf's premise is to be a front end for hdf5 and the binary back end was added afterward. So it will likely take a bit of hacking to take it out. Since the back end is componentized though, it should be possible.</div>
</div><div><br></div></div><div class="gmail_extra"><br clear="all"><div>David E DeMarle<br>Kitware, Inc.<br>R&D Engineer<br>21 Corporate Drive<br>Clifton Park, NY 12065-8662<br>Phone: 518-881-4909</div>
<br><br><div class="gmail_quote">On Fri, Aug 23, 2013 at 9:28 AM, Casey Goodlett <span dir="ltr"><<a href="mailto:casey.goodlett@kitware.com" target="_blank">casey.goodlett@kitware.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr"><div>Felipe,<br><br>I have not tried to enable xdmf support in a cross-compile environment. I added the VTK developers list in case someone on that list has insight on this compilation problem.<br></div><br>
Thank you<br>
<div class="gmail_extra"><div><div class="h5"><br><br><div class="gmail_quote">
On Thu, Aug 22, 2013 at 9:56 AM, Felipe Bordeu Weldt <span dir="ltr"><<a href="mailto:felipe.bordeu@ec-nantes.fr" target="_blank">felipe.bordeu@ec-nantes.fr</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hello,<br>
<br>
Thanks Pat for the excellent webinar about VES Android, I'm trying to build my vtk class (a reader) (using the VTK module, with a symbolic link to my readers directory).<br>
My reader depends on the vtkxdmf2 that needs hdf5 support.<br>
<br>
first error building h5<br>
<br>
[ 31%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/H5detect.dir/H5detect.c.o<br>
/work/VES/Apps/Android/CMakeBuild/build/CMakeExternals/Source/vtk/ThirdParty/hdf5/vtkhdf5/src/H5detect.c: In function 'print_header':<br>
/work/VES/Apps/Android/CMakeBuild/build/CMakeExternals/Source/vtk/ThirdParty/hdf5/vtkhdf5/src/H5detect.c:1204:29: error: 'struct passwd' has no member named 'pw_gecos'<br>
make[2]: *** [ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/H5detect.dir/H5detect.c.o] Erreur 1<br>
make[1]: *** [ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/H5detect.dir/all] Erreur 2<br>
make: *** [all] Erreur 2<br>
<br>
[ 31%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o<br>
/Big/fbordeu/VES/Apps/Android/CMakeBuild/build/CMakeExternals/Source/vtk/ThirdParty/hdf5/vtkhdf5/src/H5make_libsettings.c: In function 'print_header':<br>
/Big/fbordeu/VES/Apps/Android/CMakeBuild/build/CMakeExternals/Source/vtk/ThirdParty/hdf5/vtkhdf5/src/H5make_libsettings.c:186:18: error: 'struct passwd' has no member named 'pw_gecos'<br>
make[2]: *** [ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o] Erreur 1<br>
make[1]: *** [ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/H5make_libsettings.dir/all] Erreur 2<br>
make: *** [all] Erreur 2<br>
<br>
to solve these error I just commented the offending lines (leaving the code like without H5_HAVE_GETPWUID)<br>
<br>
then the generation of the file ./VTK/ThirdParty/hdf5/vtkhdf5/H5lib_settings.c failed<br>
so I copied from the vtk-host folder to the vtk-android<br>
<br>
now I have a this error:<br>
<br>
...<br>
[ 47%] Built target H5make_libsettings<br>
[ 47%] Building C object ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Tconv.c.o<br>
/Big/fbordeu/VES/Apps/Android/CMakeBuild/build/CMakeExternals/Source/vtk/ThirdParty/hdf5/vtkhdf5/src/H5Tconv.c: In function 'vtk__H5T_conv_llong_int':<br>
/Big/fbordeu/VES/Apps/Android/CMakeBuild/build/CMakeExternals/Source/vtk/ThirdParty/hdf5/vtkhdf5/src/H5Tconv.c:7203:1: internal compiler error: in get_arm_condition_code, at config/arm/arm.c:17187<br>
Please submit a full bug report,<br>
with preprocessed source if appropriate.<br>
See <<a href="http://gcc.gnu.org/bugs.html" target="_blank">http://gcc.gnu.org/bugs.html</a>> for instructions.<br>
make[2]: *** [ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/H5Tconv.c.o] Erreur 1<br>
make[1]: *** [ThirdParty/hdf5/vtkhdf5/src/CMakeFiles/vtkhdf5.dir/all] Erreur 2<br>
make: *** [all] Erreur 2<br>
<br>
<br>
I'm not an expert of compiling for android. I'm stuck here.<br>
<br>
Is there any way of building the XMDF library without H5 support, only ascii and binary support is enough for me ???<br>
<br>
Thanks<br>
Felipe.<br>
<br>
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</blockquote></div><br><br clear="all"><br></div></div><span class="HOEnZb"><font color="#888888">-- <br>Casey B. Goodlett, Ph.D.<br>R&D Engineer<br>Kitware, Inc. - North Carolina Office<br><a href="http://www.kitware.com" target="_blank">http://www.kitware.com</a><br>
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