<div dir="ltr"><span style="font-family:arial,sans-serif;font-size:14px">Hi </span><span style="font-family:arial,sans-serif;font-size:14px">Stephen,</span><br><div><span style="font-family:arial,sans-serif;font-size:14px"><br>
</span></div><div><span style="font-family:arial,sans-serif;font-size:14px">Probably In my case, HDCS enhancing might work well with the modification to </span><span style="font-family:arial,sans-serif;font-size:14px">itktubeAnisotropicHybridDiffus</span><span style="font-family:arial,sans-serif;font-size:14px">ionImageFilter.hxx as described below. But, I don't know whether this change is valid or not.</span></div>
<div><span style="font-family:arial,sans-serif;font-size:14px"><br></span></div><div><span style="font-family:arial,sans-serif;font-size:14px">l. 327</span></div><div><font face="arial, sans-serif"><span style="font-size:14px"> EigenVectorMatrixType eigenVectorMatrix;</span></font><br>
</div><div><font face="arial, sans-serif"><span style="font-size:14px"> ==></span></font></div><div><font face="arial, sans-serif"><span style="font-size:14px"> EigenVectorMatrixType eigenVectorMatrix = eigenVectorImageIterator.Get();</span></font><br>
</div><div><font face="arial, sans-serif"><span style="font-size:14px"><br></span></font></div><div><font face="arial, sans-serif"><span style="font-size:14px">Thanks a lot,</span></font></div><div><font face="arial, sans-serif"><span style="font-size:14px">yoshimi</span></font></div>
</div><div class="gmail_extra"><br><br><div class="gmail_quote">2013/11/25 kenichiro yoshimi <span dir="ltr"><<a href="mailto:rccm.kyoshimi@gmail.com" target="_blank">rccm.kyoshimi@gmail.com</a>></span><br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr"><span style="font-family:arial,sans-serif;font-size:14px">Hi </span><span style="font-family:arial,sans-serif;font-size:14px">Stephen,</span><br><div><br></div><div>Today, I could confirm that HDCS enhancing works, by setting the particular parameters (EED Contrast (1.0), CED Contrast (1.0) and Hybrid Contrast(1.0)) to testing case. Now I'm trying in my cases. Then I meet the failure to sort eigenvalues in "itktubeAnisotropicHybridDiffusionImageFilter.hxx". The following codes may be wrong:</div>
<div><br></div><div>l. 216:</div><div>if( vnl_math_abs( eigenValue[i] > largest ) )<br></div><div> ==> if( vnl_math_abs( eigenValue[i] ) > largest )</div><div><br></div><div>l.226:</div><div>if( eigenValue[i] != smallest && eigenValue[i] != largest )<br>
</div><div> ==> if( vnl_math_abs( eigenValue[i] ) != smallest &&</div><div> vnl_math_abs( eigenValue[i] ) != largest ) </div><div><br></div><div>Could you please confirm this?</div><div><br></div>
<div>
Thanks,</div><div>yoshimi</div></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><br><div class="gmail_quote">2013/11/21 kenichiro yoshimi <span dir="ltr"><<a href="mailto:rccm.kyoshimi@gmail.com" target="_blank">rccm.kyoshimi@gmail.com</a>></span><br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi <span style="font-family:arial,sans-serif;font-size:14px">Stephen,</span><div><span style="font-family:arial,sans-serif;font-size:14px"><br>
</span></div><div><span style="font-family:arial,sans-serif;font-size:14px">Thank you for your kind advice.</span></div>
<div><span style="font-family:arial,sans-serif;font-size:14px"><br></span></div><div><font face="arial, sans-serif"><span style="font-size:14px">Following your instructions, I build a "Experimental" project, but the tests may not run. Then I obtain the build log as:</span></font></div>
<div><font face="arial, sans-serif"><span style="font-size:14px"><br></span></font></div><div><font face="arial, sans-serif"><span style="font-size:14px"><div>1>------ Build : Project: Experimental, Release x64 ------</div>
<div>1> Site: YOSHIMI</div><div>1> Build name: Win32-vs9</div><div>1>Create new tag: 20131120-2346 - Experimental</div><div>1>Configure project</div><div>1> Each . represents 1024 bytes of output</div>
<div>1> . Size of output: 0K</div><div>1>Build project</div><div>1> Each symbol represents 1024 bytes of output.</div><div>1> '!' represents an error and '*' a warning.</div><div>1> ......... Size of output: 8K</div>
<div>1> 0 Compiler errors</div><div>1> 0 Compiler warnings</div><div>1>Test project G:/work/kitware/build/TubeTK</div><div>1>No tests were found!!!</div><div>1>Performing coverage</div><div>1> Cannot find any coverage files. Ignoring Coverage request.</div>
<div>1>Submit files (using http)</div><div>1> Using HTTP submit method</div><div>1> Drop site:<a href="http://open.cdash.org/submit.php?project=TubeTK" target="_blank">http://open.cdash.org/submit.php?project=TubeTK</a></div>
<div>1> Uploaded: G:/work/kitware/build/TubeTK/Testing/20131120-2346/Build.xml</div><div>1> Uploaded: G:/work/kitware/build/TubeTK/Testing/20131120-2346/Configure.xml</div><div>1> Uploaded: G:/work/kitware/build/TubeTK/Testing/20131120-2346/Test.xml</div>
<div>1> Submission successful</div><div><br></div><div>I am attaching the CMakeCache.txt file for the building TubeTK. I appreciate if you would point out what I was doing wrong.<br></div><div><br></div><div>Thanks,</div>
<div>yoshimi</div></span></font></div></div><div><div><div class="gmail_extra"><br><br><div class="gmail_quote">2013/11/20 Stephen Aylward <span dir="ltr"><<a href="mailto:stephen.aylward@kitware.com" target="_blank">stephen.aylward@kitware.com</a>></span><br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
<br>
Sorry that you are having troubles.<br>
<br>
When you build using windows, there should be a build target/project<br>
called "Experimental" that you can build from within Visual Studio<br>
2008. Please try building that project. It should cause all of the<br>
tests to run. Please let me know if there are failures.<br>
<br>
Thanks,<br>
Stephen<br>
<br>
<br>
On Wed, Nov 20, 2013 at 6:36 AM, kenichiro yoshimi<br>
<div><div><<a href="mailto:rccm.kyoshimi@gmail.com" target="_blank">rccm.kyoshimi@gmail.com</a>> wrote:<br>
> Hi Stephen,<br>
><br>
> Thanks for your reply.<br>
> I build TubeTK with Visual Studio 2008, but I don't know the way to run the<br>
> tests. So, I write the program that is the same as<br>
> "itktubeAnisotropicHybridDiffusionImageFilterTest.cxx" and run with the<br>
> testing data. The result has no error, but the output image data is the same<br>
> as input data just like using Slicer plugin.<br>
><br>
> My Slicer versioin is 4.3.1-2013-11-07 r22692 64 bit. My system is Windows 8<br>
> 64bit.<br>
><br>
> Best regards,<br>
> yoshimi<br>
><br>
><br>
> 2013/11/19 Stephen Aylward <<a href="mailto:stephen.aylward@kitware.com" target="_blank">stephen.aylward@kitware.com</a>><br>
>><br>
>> Hi Kenichiro,<br>
>><br>
>> Thank you for trying TubeTK.<br>
>><br>
>> How did you install the TubeTK extensions? If you compiled them, then<br>
>> I would like you to run the tests on your local build, and see if they<br>
>> pass. As you said, we use that data in testing, and so if the tests<br>
>> pass, then the integration into Slicer is the problem. If the tests<br>
>> fail, then the build of TubeTK is the problem.<br>
>><br>
>> Also, what version of Slicer are you using?<br>
>><br>
>> Thanks,<br>
>> Stephen<br>
>><br>
>><br>
>> On Mon, Nov 11, 2013 at 6:31 AM, kenichiro yoshimi<br>
>> <<a href="mailto:rccm.kyoshimi@gmail.com" target="_blank">rccm.kyoshimi@gmail.com</a>> wrote:<br>
>> > Dear all,<br>
>> ><br>
>> > I'm trying to use the Slicer plugin filter named "Hybrid Enhancing<br>
>> > Anisotropic Diffusion with Continuous Switch (TubeTK)". But it does not<br>
>> > reflect even if I specify various parameters. I try to apply it to<br>
>> > CroppedWholeLungCTScan.mhd which is used for testing framework.<br>
>> ><br>
>> > Can someone help me in getting this to work?<br>
>> ><br>
>> > Cheers,<br>
>> > yoshimi<br>
>> ><br>
>> > _______________________________________________<br>
>> > Tubetk-developers mailing list<br>
>> > <a href="mailto:Tubetk-developers@tubetk.org" target="_blank">Tubetk-developers@tubetk.org</a><br>
>> > <a href="http://public.kitware.com/cgi-bin/mailman/listinfo/tubetk-developers" target="_blank">http://public.kitware.com/cgi-bin/mailman/listinfo/tubetk-developers</a><br>
>> ><br>
>><br>
>><br>
>><br>
>> --<br>
>><br>
>> ====================================================<br>
>> Stephen R. Aylward, Ph.D.<br>
>> Senior Director of Operations, North Carolina, Kitware, Inc.<br>
>> <a href="http://www.kitware.com" target="_blank">http://www.kitware.com</a><br>
>> <a href="http://www.aylward.org" target="_blank">http://www.aylward.org</a><br>
>> <a href="tel:%28919%29%20969-6990%20x300" value="+19199696990" target="_blank">(919) 969-6990 x300</a><br>
>> ====================================================<br>
><br>
><br>
<br>
<br>
<br>
--<br>
<br>
====================================================<br>
Stephen R. Aylward, Ph.D.<br>
Senior Director of Operations, North Carolina, Kitware, Inc.<br>
<a href="http://www.kitware.com" target="_blank">http://www.kitware.com</a><br>
<a href="http://www.aylward.org" target="_blank">http://www.aylward.org</a><br>
<a href="tel:%28919%29%20969-6990%20x300" value="+19199696990" target="_blank">(919) 969-6990 x300</a><br>
====================================================<br>
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